rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2283_1.02 (Foxp4)_(Homo_sapiens)_(DBD_0.87) MWWADGTAAACAAAR 4.28e-9 1.43e-6 1.02e-3 333 29 29 1015 81.3 7 24.14 5 0.49 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6482_1.02 (Sp3)_(Homo_sapiens)_(DBD_0.97) VGVVGGGGGCGGGGCBRGSS 3.41e-9 2.23e-6 1.60e-3 656 29 29 1015 13.2 14 48.28 68 6.70 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSSVRGRGGCGGGRC 6.61e-9 4.15e-6 2.98e-3 628 29 29 1015 5.15 17 58.62 122 12.02 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 1.05e-8 6.99e-6 5.02e-3 666 29 29 1015 4.06 17 58.62 126 12.41 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 3.48e-8 2.00e-5 1.44e-2 576 29 29 1015 6.16 14 48.28 83 8.18 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1965_1.02 (Foxa1)_(Homo_sapiens)_(DBD_1.00) HWRWGTAAACANVNN 2.72e-7 6.84e-5 4.91e-2 252 29 29 1015 11.3 8 27.59 20 1.97 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6124_1.02 Sox17 BBCCATTGTYY 2.34e-7 1.08e-4 7.77e-2 462 29 29 1015 16 5 17.24 2 0.20 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6456_1.02 (Rreb1)_(Homo_sapiens)_(DBD_0.99) DKGKKKGKGGKTGKTTKGGGKT 5.56e-7 1.26e-4 9.06e-2 227 29 29 1015 6.59 10 34.48 44 4.33 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 3.34e-7 2.11e-4 1.52e-1 632 29 29 1015 15 11 37.93 54 5.32 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2312_1.02 Sox3 CCTTTGTYYY 6.13e-7 3.17e-4 2.27e-1 517 29 29 1015 24.5 5 17.24 3 0.30 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKKGGGGGAGGGG 1.13e-6 5.78e-4 4.15e-1 512 29 29 1015 54.6 6 20.69 9 0.89 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2274_1.02 Egr2 GKGYGTGGGYGKRDS 3.22e-6 1.17e-3 8.41e-1 364 29 29 1015 1.18 21 72.41 299 29.46 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0426_1.02 Zfp3 DGTGTGCGYNN 8.71e-6 1.30e-3 9.32e-1 149 29 29 1015 1.06 13 44.83 114 11.23 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6239_1.02 (Foxf2)_(Homo_sapiens)_(DBD_1.00) HWADGTAAACA 8.62e-6 2.20e-3 1.58e0 256 29 29 1015 3.57 12 41.38 95 9.36 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0405_1.02 Klf7 DGGGCGKGGY 3.95e-6 2.28e-3 1.64e0 579 29 29 1015 2.91 6 20.69 12 1.18 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1879_1.02 Foxa2 VCWRWGTAAACA 9.76e-6 2.45e-3 1.76e0 251 29 29 1015 4.4 9 31.03 48 4.73 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2313_1.02 Sox6 CCWTTGTYYY 6.96e-6 2.73e-3 1.96e0 393 29 29 1015 23.7 4 13.79 2 0.20 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0732_1.02 Foxc2 WRNRTMAAYA 9.28e-6 3.69e-3 2.65e0 398 29 29 1015 1.62 16 55.17 180 17.73 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5856_1.02 (Sp8)_(Homo_sapiens)_(DBD_1.00) RGKGGGCGTGGY 1.14e-5 5.57e-3 4.00e0 491 29 29 1015 1.11 24 82.76 427 42.07 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0443_1.02 Klf12 DGGGCGKGKY 1.09e-5 5.72e-3 4.10e0 526 29 29 1015 2.45 6 20.69 15 1.48 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0734_1.02 Foxc1 WRNRTMAAYA 1.59e-5 6.61e-3 4.74e0 416 29 29 1015 5.91 4 13.79 3 0.30 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0721_1.02 Foxj2 RTMAACANN 1.95e-5 6.97e-3 5.01e0 359 29 29 1015 4.28 5 17.24 9 0.89 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4453_1.02 (Bcl11a)_(Homo_sapiens)_(DBD_1.00) ADGRGGAASTGARAV 1.55e-5 7.00e-3 5.02e0 454 29 29 1015 1.32 22 75.86 361 35.57 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0392_1.02 Sp1 GGGGGCGKG 1.49e-5 7.22e-3 5.19e0 488 29 29 1015 2.91 13 44.83 120 11.82 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0942_1.02 Irx4 DTGTHNNN 1.93e-5 7.80e-3 5.60e0 405 29 29 1015 2.69 3 10.34 0 0.00 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1604_1.02 Sox4 YWTTGTYNN 1.59e-5 8.17e-3 5.87e0 515 29 29 1015 6.39 4 13.79 3 0.30 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2299_1.02 Myod1 NRNRRCAGCTGSN 1.96e-5 8.55e-3 6.14e0 438 29 29 1015 2.71 15 51.72 167 16.45 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6244_1.02 (Foxm1)_(Homo_sapiens)_(DBD_0.99) RWAAWCAMWCAAV 2.27e-5 9.02e-3 6.48e0 400 29 29 1015 4.38 13 44.83 125 12.32 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1871_1.02 Klf4 DGGGYGKGGC 1.93e-5 9.61e-3 6.90e0 500 29 29 1015 11.1 3 10.34 0 0.00 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1882_1.02 (Irf1)_(Homo_sapiens)_(DBD_1.00) RAAVNGAAAGTGAAASYRRRN 3.52e-5 1.02e-2 7.31e0 291 29 29 1015 7.71 12 41.38 110 10.84 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0747_1.02 Foxl1 NNNRTAAAYA 3.29e-5 1.12e-2 8.04e0 342 29 29 1015 6.58 6 20.69 19 1.87 32 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1265_1.02 Irf7 DAARCGAAAR 1.93e-5 1.15e-2 8.22e0 596 29 29 1015 9.25 3 10.34 0 0.00 33 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6250_1.02 (Foxq1)_(Homo_sapiens)_(DBD_1.00) AAATAAACAATD 7.58e-5 1.25e-2 8.98e0 166 29 29 1015 60 3 10.34 1 0.10 34 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6478_1.02 (Sox9)_(Homo_sapiens)_(DBD_1.00) ARAACAATGGR 4.20e-5 1.31e-2 9.43e0 315 29 29 1015 8.06 6 20.69 20 1.97 35 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5446_1.02 (Foxd1)_(Homo_sapiens)_(DBD_0.99) GTAAACA 4.87e-5 1.32e-2 9.48e0 273 29 29 1015 3.02 8 27.59 45 4.43 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control --shuffle-- -o AME-CISBP_Mus_musculus-mm10-refFlat-2014-10-26.TSS-500bp.LateMuscleFinalgenes_Loose ../mm10-refFlat-2014-10-26.TSS-500bp.LateMuscleFinalgenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme