rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKKGGGGGAGGGG 2.76e-10 1.63e-7 1.17e-4 589 33 33 1023 5.31 24 72.73 206 20.14 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSSVRGRGGCGGGRC 1.36e-9 9.69e-7 6.95e-4 711 33 33 1023 2.94 26 78.79 273 26.69 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 2.63e-9 1.86e-6 1.33e-3 706 33 33 1023 2.13 28 84.85 340 33.24 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6482_1.02 (Sp3)_(Homo_sapiens)_(DBD_0.97) VGVVGGGGGCGGGGCBRGSS 3.47e-9 2.58e-6 1.85e-3 744 33 33 1023 5.7 22 66.67 188 18.38 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4536_1.02 (E2f1)_(Homo_sapiens)_(DBD_0.98) VRRVRGVGCGCGCRS 2.01e-8 8.71e-6 6.25e-3 433 33 33 1023 3.25 16 48.48 95 9.29 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4635_1.02 (Stat2)_(Homo_sapiens)_(DBD_0.81) GAAANYGAAACTDAA 7.33e-7 2.18e-4 1.56e-1 297 33 33 1023 10.5 12 36.36 63 6.16 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0437_1.02 Zfp637 TATRTATRT 1.15e-6 2.23e-4 1.60e-1 195 33 33 1023 2.79 5 15.15 3 0.29 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6336_1.02 (Maz)_(Homo_sapiens)_(DBD_0.98) RGGGRGGGGAGGGRGGG 4.10e-7 3.05e-4 2.19e-1 745 33 33 1023 4.97 25 75.76 324 31.67 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6535_1.02 (Wt1)_(Homo_sapiens)_(DBD_0.99) GMGGGGGCGKGGG 5.68e-7 3.32e-4 2.38e-1 584 33 33 1023 1.95 24 72.73 301 29.42 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5209_1.02 (Sp5)_(Drosophila_melanogaster)_(DBD_0.93) GKGGGCGKRKC 9.56e-7 3.36e-4 2.41e-1 351 33 33 1023 1.4 19 57.58 187 18.28 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4467_1.02 (Mef2c)_(Homo_sapiens)_(DBD_1.00) NDKCYAAAAATAGMH 1.44e-6 3.86e-4 2.77e-1 268 33 33 1023 2.06 17 51.52 151 14.76 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4466_1.02 (Mef2a)_(Homo_sapiens)_(DBD_1.00) NDKCYAAAAATAGMH 1.53e-6 3.89e-4 2.79e-1 254 33 33 1023 5.76 12 36.36 68 6.65 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6456_1.02 (Rreb1)_(Homo_sapiens)_(DBD_0.99) DKGKKKGKGGKTGKTTKGGGKT 2.59e-6 6.10e-4 4.38e-1 236 33 33 1023 17.8 7 21.21 16 1.56 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 9.10e-7 6.46e-4 4.64e-1 710 33 33 1023 2.9 26 78.79 367 35.87 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6241_1.02 (Foxn3)_(Homo_sapiens)_(DBD_0.45) WAAAYAAACA 3.45e-6 8.28e-4 5.95e-1 240 33 33 1023 3.75 12 36.36 74 7.23 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0133_1.02 Phf21a NNWATATWAATT 3.54e-6 8.64e-4 6.20e-1 244 33 33 1023 1.13 19 57.58 204 19.94 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1882_1.02 (Irf1)_(Homo_sapiens)_(DBD_1.00) RAAVNGAAAGTGAAASYRRRN 4.58e-6 1.40e-3 1.00e0 305 33 33 1023 1.38 21 63.64 255 24.93 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6244_1.02 (Foxm1)_(Homo_sapiens)_(DBD_0.99) RWAAWCAMWCAAV 6.72e-6 2.62e-3 1.88e0 390 33 33 1023 1.8 19 57.58 213 20.82 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6239_1.02 (Foxf2)_(Homo_sapiens)_(DBD_1.00) HWADGTAAACA 1.37e-5 3.05e-3 2.19e0 223 33 33 1023 1.31 16 48.48 158 15.44 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6155_1.02 (Atf6)_(Homo_sapiens)_(DBD_0.98) GBGSTGACGTGG 3.60e-5 3.34e-3 2.40e0 93 33 33 1023 1.83 8 24.24 37 3.62 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0728_1.02 Foxj1 NRTAAACAAANN 9.57e-6 3.37e-3 2.42e0 353 33 33 1023 2.2 17 51.52 174 17.01 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6201_1.02 (Egr4)_(Homo_sapiens)_(DBD_1.00) GGSGGYRGGGM 7.73e-6 3.62e-3 2.60e0 469 33 33 1023 1.16 26 78.79 406 39.69 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6121_1.02 Pou5f1 TTTRCATDWVAAARR 1.24e-5 3.82e-3 2.74e0 309 33 33 1023 4.86 13 39.39 101 9.87 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6127_1.02 Klf2 DGGGYGKGGCB 8.56e-6 4.18e-3 3.00e0 489 33 33 1023 1.12 26 78.79 408 39.88 25 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2283_1.02 (Foxp4)_(Homo_sapiens)_(DBD_0.87) MWWADGTAAACAAAR 1.61e-5 5.20e-3 3.74e0 324 33 33 1023 10.8 12 36.36 87 8.50 26 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0734_1.02 Foxc1 WRNRTMAAYA 1.39e-5 5.39e-3 3.87e0 389 33 33 1023 1.56 17 51.52 179 17.50 27 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0732_1.02 Foxc2 WRNRTMAAYA 1.61e-5 6.07e-3 4.36e0 379 33 33 1023 1.6 17 51.52 181 17.69 28 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6237_1.02 (Foxd3)_(Homo_sapiens)_(DBD_1.00) AAACAAACA 2.34e-5 7.76e-3 5.57e0 333 33 33 1023 7.47 10 30.30 60 5.87 29 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6136_1.02 Bcl6 RRRDRRVVRRRRGRRRGGAAGWVWKGRARA 1.50e-5 9.41e-3 6.76e0 631 33 33 1023 4.49 24 72.73 357 34.90 30 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6234_1.02 (Foxa3)_(Homo_sapiens)_(DBD_1.00) RVWAARYAAAYAD 3.36e-5 9.67e-3 6.94e0 289 33 33 1023 1.81 16 48.48 170 16.62 31 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6325_1.02 (Klf6)_(Homo_sapiens)_(DBD_1.00) GGGGGCKG 1.22e-5 9.72e-3 6.98e0 800 33 33 1023 2.14 18 54.55 199 19.45 32 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M5980_1.02 (Zfp784)_(Homo_sapiens)_(DBD_0.98) AGGTAGGTAC 1.35e-4 1.03e-2 7.42e0 77 33 33 1023 3.09 7 21.21 33 3.23 33 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2271_1.02 E2f3 SDSYGVGGGCGGGAR 2.78e-5 1.22e-2 8.79e0 443 33 33 1023 2.87 15 45.45 147 14.37 34 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2282_1.02 Foxo1 DGTAAACARSA 4.33e-5 1.34e-2 9.60e0 311 33 33 1023 1.12 20 60.61 267 26.10 35 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1127_1.02 Dobox4 NWRAKMCHNN 2.79e-5 1.38e-2 9.92e0 499 33 33 1023 2.08 3 9.09 0 0.00 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control --shuffle-- -o AME-CISBP_Mus_musculus-mm10-refFlat-2014-10-26.TSS-500bp.ChondroOsteoFinalgenes_Loose ../mm10-refFlat-2014-10-26.TSS-500bp.ChondroOsteoFinalgenes_Loose.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme