rank motif_DB motif_ID motif_alt_ID consensus p-value adj_p-value E-value tests FASTA_max pos neg PWM_min TP %TP FP %FP 1 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6482_1.02 (Sp3)_(Homo_sapiens)_(DBD_0.97) VGVVGGGGGCGGGGCBRGSS 2.03e-8 1.46e-5 1.05e-2 718 9 9 1008 7.34 7 77.78 45 4.46 2 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6239_1.02 (Foxf2)_(Homo_sapiens)_(DBD_1.00) HWADGTAAACA 1.29e-7 2.20e-5 1.58e-2 171 9 9 1008 2.46 7 77.78 60 5.95 3 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2391_1.02 (Klf5)_(Homo_sapiens)_(DBD_0.95) DGGGHGGGGC 1.05e-7 6.89e-5 4.94e-2 658 9 9 1008 3.43 8 88.89 100 9.92 4 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0411_1.02 Zfp300 NNYNRTGTATAMNNN 1.05e-6 2.32e-4 1.66e-1 220 9 9 1008 1.73 5 55.56 22 2.18 5 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6336_1.02 (Maz)_(Homo_sapiens)_(DBD_0.98) RGGGRGGGGAGGGRGGG 4.16e-7 2.78e-4 2.00e-1 668 9 9 1008 6.41 9 100.00 193 19.15 6 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0635_1.02 Dmrtc2 NAMATGTATHMWN 2.74e-6 3.15e-4 2.26e-1 115 9 9 1008 1.07 7 77.78 96 9.52 7 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2314_1.02 (Sp2)_(Homo_sapiens)_(DBD_1.00) SSSVRGRGGCGGGRC 7.07e-7 4.80e-4 3.44e-1 679 9 9 1008 3.22 9 100.00 205 20.34 8 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1879_1.02 Foxa2 VCWRWGTAAACA 9.48e-6 1.53e-3 1.10e0 161 9 9 1008 17.4 3 33.33 3 0.30 9 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6123_1.02 Zfp281 GRGKKGGGGGAGGGG 4.49e-6 2.28e-3 1.64e0 508 9 9 1008 5.15 8 88.89 164 16.27 10 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0737_1.02 Foxb1 WRWGTAAAYA 8.23e-6 2.32e-3 1.66e0 282 9 9 1008 2.9 4 44.44 14 1.39 11 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0734_1.02 Foxc1 WRNRTMAAYA 4.93e-6 2.41e-3 1.73e0 489 9 9 1008 2.27 4 44.44 12 1.19 12 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1965_1.02 (Foxa1)_(Homo_sapiens)_(DBD_1.00) HWRWGTAAACANVNN 1.65e-5 2.61e-3 1.87e0 158 9 9 1008 31.6 3 33.33 4 0.40 13 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0632_1.02 (Dmrta2)_(Homo_sapiens)_(DBD_1.00) HHWGTWDCNN 5.50e-6 2.91e-3 2.09e0 530 9 9 1008 1.53 5 55.56 32 3.17 14 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M4635_1.02 (Stat2)_(Homo_sapiens)_(DBD_0.81) GAAANYGAAACTDAA 2.04e-5 4.31e-3 3.09e0 212 9 9 1008 1.05 8 88.89 200 19.84 15 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0732_1.02 Foxc2 WRNRTMAAYA 1.29e-5 5.89e-3 4.23e0 457 9 9 1008 2.48 4 44.44 16 1.59 16 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2283_1.02 (Foxp4)_(Homo_sapiens)_(DBD_0.87) MWWADGTAAACAAAR 2.63e-5 6.61e-3 4.75e0 252 9 9 1008 80.1 3 33.33 5 0.50 17 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0348_1.02 Nfil3 NRTTAYVN 2.08e-5 6.72e-3 4.82e0 324 9 9 1008 1.16 5 55.56 43 4.27 18 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6552_1.02 (Zfp148)_(Homo_sapiens)_(DBD_1.00) KGVGKGGGGGAGGGG 1.29e-5 8.56e-3 6.15e0 665 9 9 1008 15.2 4 44.44 16 1.59 19 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M1057_1.02 Homez NNHWCGWDNN 1.65e-5 8.83e-3 6.34e0 537 9 9 1008 1.47 3 33.33 4 0.40 20 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0641_1.02 (Dmrta1)_(Drosophila_melanogaster)_(DBD_0.96) TGTWDCNWWW 2.08e-5 9.17e-3 6.59e0 443 9 9 1008 1.61 5 55.56 43 4.27 21 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6024_1.02 Hlf BRTTACGTAAYM 6.87e-4 1.03e-2 7.37e0 15 9 9 1008 3.62 2 22.22 3 0.30 22 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M6234_1.02 (Foxa3)_(Homo_sapiens)_(DBD_1.00) RVWAARYAAAYAD 4.52e-5 1.06e-2 7.61e0 236 9 9 1008 4.89 5 55.56 51 5.06 23 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M0437_1.02 Zfp637 TATRTATRT 7.03e-5 1.23e-2 8.82e0 176 9 9 1008 1.43 4 44.44 26 2.58 24 /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme M2271_1.02 E2f3 SDSYGVGGGCGGGAR 2.79e-5 1.26e-2 9.04e0 454 9 9 1008 9.92 4 44.44 20 1.98 # AME (Analysis of Motif Enrichment): Version 5.0.1 compiled on Aug 20 2018 at 02:27:28 # The format of this file is described at http://meme-suite.org/doc/ame-output-format.html. # ame --control --shuffle-- -o AME-CISBP_Mus_musculus-mm10-refFlat-2014-10-26.TSS-500bp.ChondroOsteoFinalGenes ../mm10-refFlat-2014-10-26.TSS-500bp.ChondroOsteoFinalGenes.fa /home/users/marinovg/programs/meme_4.11.2/motif_databases/CIS-BP/Mus_musculus.meme