## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[thyroid_gland-ENCSR474XFV-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=thyroid_gland-ENCSR474XFV-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=thyroid_gland-ENCSR474XFV-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:18 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	53217742	0	0	2706781	663991	0.050862	658377111

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.012131
2.0	1.945669
3.0	2.806716
4.0	3.600902
5.0	4.333419
6.0	5.009055
7.0	5.632228
8.0	6.20701
9.0	6.73716
10.0	7.226143
11.0	7.677156
12.0	8.093147
13.0	8.476836
14.0	8.830731
15.0	9.157146
16.0	9.458215
17.0	9.735905
18.0	9.992032
19.0	10.228271
20.0	10.446165
21.0	10.64714
22.0	10.832509
23.0	11.003483
24.0	11.161182
25.0	11.306635
26.0	11.440793
27.0	11.564534
28.0	11.678666
29.0	11.783936
30.0	11.881031
31.0	11.970587
32.0	12.053188
33.0	12.129376
34.0	12.199648
35.0	12.264462
36.0	12.324244
37.0	12.379384
38.0	12.430242
39.0	12.477151
40.0	12.520418
41.0	12.560324
42.0	12.597132
43.0	12.631082
44.0	12.662396
45.0	12.691278
46.0	12.717917
47.0	12.742488
48.0	12.76515
49.0	12.786053
50.0	12.805333
51.0	12.823116
52.0	12.839518
53.0	12.854646
54.0	12.8686
55.0	12.88147
56.0	12.89334
57.0	12.904289
58.0	12.914388
59.0	12.923702
60.0	12.932294
61.0	12.940218
62.0	12.947527
63.0	12.954268
64.0	12.960486
65.0	12.966221
66.0	12.97151
67.0	12.976389
68.0	12.980889
69.0	12.98504
70.0	12.988868
71.0	12.992399
72.0	12.995656
73.0	12.99866
74.0	13.001431
75.0	13.003986
76.0	13.006343
77.0	13.008517
78.0	13.010523
79.0	13.012372
80.0	13.014078
81.0	13.015652
82.0	13.017103
83.0	13.018442
84.0	13.019676
85.0	13.020815
86.0	13.021865
87.0	13.022834
88.0	13.023728
89.0	13.024552
90.0	13.025312
91.0	13.026013
92.0	13.02666
93.0	13.027256
94.0	13.027806
95.0	13.028314
96.0	13.028782
97.0	13.029214
98.0	13.029612
99.0	13.029979
100.0	13.030318