## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[spleen-ENCSR078EBD-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=spleen-ENCSR078EBD-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=spleen-ENCSR078EBD-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:23 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	58122080	0	0	6554893	5870273	0.112778	1976534769

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.110703
2.0	2.18922
3.0	3.236484
4.0	4.2534
5.0	5.240849
6.0	6.199683
7.0	7.130732
8.0	8.034801
9.0	8.912672
10.0	9.765105
11.0	10.592836
12.0	11.39658
13.0	12.177034
14.0	12.934872
15.0	13.67075
16.0	14.385303
17.0	15.07915
18.0	15.752891
19.0	16.407108
20.0	17.042368
21.0	17.659219
22.0	18.258194
23.0	18.839813
24.0	19.404578
25.0	19.952977
26.0	20.485484
27.0	21.002561
28.0	21.504654
29.0	21.992197
30.0	22.465612
31.0	22.925309
32.0	23.371685
33.0	23.805125
34.0	24.226006
35.0	24.63469
36.0	25.031531
37.0	25.416873
38.0	25.791048
39.0	26.154381
40.0	26.507185
41.0	26.849765
42.0	27.182418
43.0	27.505432
44.0	27.819085
45.0	28.123649
46.0	28.419388
47.0	28.706557
48.0	28.985404
49.0	29.256171
50.0	29.519091
51.0	29.774393
52.0	30.022297
53.0	30.263016
54.0	30.496761
55.0	30.723732
56.0	30.944125
57.0	31.158132
58.0	31.365938
59.0	31.567722
60.0	31.763659
61.0	31.953918
62.0	32.138663
63.0	32.318055
64.0	32.492249
65.0	32.661394
66.0	32.825639
67.0	32.985124
68.0	33.139987
69.0	33.290363
70.0	33.436381
71.0	33.578168
72.0	33.715846
73.0	33.849534
74.0	33.979349
75.0	34.105402
76.0	34.227802
77.0	34.346655
78.0	34.462064
79.0	34.574129
80.0	34.682946
81.0	34.78861
82.0	34.891212
83.0	34.990841
84.0	35.087583
85.0	35.181521
86.0	35.272738
87.0	35.361311
88.0	35.447317
89.0	35.530831
90.0	35.611925
91.0	35.690669
92.0	35.767132
93.0	35.841378
94.0	35.913473
95.0	35.983479
96.0	36.051457
97.0	36.117464
98.0	36.181559
99.0	36.243796
100.0	36.30423