## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[right_lobe_of_liver-ENCSR373TDL-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=right_lobe_of_liver-ENCSR373TDL-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=right_lobe_of_liver-ENCSR373TDL-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:18 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	43838291	0	0	4932488	3564322	0.112516	579259541

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.085199
2.0	2.0913
3.0	3.02407
4.0	3.888853
5.0	4.690604
6.0	5.433919
7.0	6.123055
8.0	6.761962
9.0	7.354301
10.0	7.903466
11.0	8.412604
12.0	8.884633
13.0	9.322257
14.0	9.727983
15.0	10.104138
16.0	10.452876
17.0	10.776195
18.0	11.075948
19.0	11.353854
20.0	11.611503
21.0	11.850374
22.0	12.071833
23.0	12.277151
24.0	12.467505
25.0	12.643983
26.0	12.807599
27.0	12.95929
28.0	13.099924
29.0	13.230308
30.0	13.351188
31.0	13.463258
32.0	13.567159
33.0	13.663487
34.0	13.752795
35.0	13.835592
36.0	13.912355
37.0	13.983523
38.0	14.049504
39.0	14.110676
40.0	14.167389
41.0	14.219968
42.0	14.268715
43.0	14.313909
44.0	14.355809
45.0	14.394655
46.0	14.430669
47.0	14.464059
48.0	14.495015
49.0	14.523715
50.0	14.550322
51.0	14.574991
52.0	14.597861
53.0	14.619065
54.0	14.638723
55.0	14.656948
56.0	14.673845
57.0	14.68951
58.0	14.704033
59.0	14.717498
60.0	14.729982
61.0	14.741555
62.0	14.752285
63.0	14.762233
64.0	14.771456
65.0	14.780007
66.0	14.787934
67.0	14.795284
68.0	14.802098
69.0	14.808415
70.0	14.814272
71.0	14.819702
72.0	14.824736
73.0	14.829403
74.0	14.83373
75.0	14.837742
76.0	14.841461
77.0	14.844909
78.0	14.848106
79.0	14.85107
80.0	14.853818
81.0	14.856365
82.0	14.858727
83.0	14.860917
84.0	14.862947
85.0	14.864829
86.0	14.866574
87.0	14.868192
88.0	14.869692
89.0	14.871082
90.0	14.872371
91.0	14.873567
92.0	14.874675
93.0	14.875702
94.0	14.876655
95.0	14.877538
96.0	14.878356
97.0	14.879115
98.0	14.879819
99.0	14.880471
100.0	14.881076