## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[prostate_gland-ENCSR999NKW-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=prostate_gland-ENCSR999NKW-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=prostate_gland-ENCSR999NKW-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:23 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	23010901	0	0	1008129	315120	0.043811	364034694

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.01345
2.0	1.964822
3.0	2.857919
4.0	3.696309
5.0	4.483344
6.0	5.22217
7.0	5.91574
8.0	6.566825
9.0	7.178029
10.0	7.751794
11.0	8.290413
12.0	8.796039
13.0	9.270694
14.0	9.716273
15.0	10.13456
16.0	10.527224
17.0	10.895836
18.0	11.241868
19.0	11.566705
20.0	11.871644
21.0	12.157905
22.0	12.42663
23.0	12.678895
24.0	12.915708
25.0	13.138014
26.0	13.346704
27.0	13.54261
28.0	13.726517
29.0	13.899158
30.0	14.061224
31.0	14.213363
32.0	14.356183
33.0	14.490254
34.0	14.616113
35.0	14.734262
36.0	14.845175
37.0	14.949293
38.0	15.047034
39.0	15.138788
40.0	15.224921
41.0	15.305778
42.0	15.381683
43.0	15.452938
44.0	15.519828
45.0	15.582621
46.0	15.641568
47.0	15.696904
48.0	15.74885
49.0	15.797615
50.0	15.843392
51.0	15.886365
52.0	15.926706
53.0	15.964576
54.0	16.000126
55.0	16.033499
56.0	16.064828
57.0	16.094237
58.0	16.121845
59.0	16.147762
60.0	16.172091
61.0	16.19493
62.0	16.21637
63.0	16.236497
64.0	16.255391
65.0	16.273127
66.0	16.289778
67.0	16.305408
68.0	16.320081
69.0	16.333855
70.0	16.346785
71.0	16.358923
72.0	16.370318
73.0	16.381015
74.0	16.391056
75.0	16.400483
76.0	16.409332
77.0	16.417639
78.0	16.425437
79.0	16.432758
80.0	16.43963
81.0	16.446081
82.0	16.452137
83.0	16.457822
84.0	16.463159
85.0	16.468168
86.0	16.472871
87.0	16.477286
88.0	16.481431
89.0	16.485322
90.0	16.488974
91.0	16.492402
92.0	16.495621
93.0	16.498642
94.0	16.501479
95.0	16.504141
96.0	16.506641
97.0	16.508987
98.0	16.51119
99.0	16.513258
100.0	16.515199