## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[heart_left_ventricle-ENCSR117PYB-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=heart_left_ventricle-ENCSR117PYB-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=heart_left_ventricle-ENCSR117PYB-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:21 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	28900898	0	0	4412575	3781475	0.15268	491500535

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.146163
2.0	2.226873
3.0	3.245868
4.0	4.206672
5.0	5.112609
6.0	5.966812
7.0	6.772234
8.0	7.531662
9.0	8.247722
10.0	8.922891
11.0	9.559503
12.0	10.159762
13.0	10.725742
14.0	11.259401
15.0	11.762585
16.0	12.237034
17.0	12.684389
18.0	13.106198
19.0	13.503919
20.0	13.878928
21.0	14.232521
22.0	14.565922
23.0	14.880284
24.0	15.176694
25.0	15.456178
26.0	15.719701
27.0	15.968175
28.0	16.20246
29.0	16.423366
30.0	16.631657
31.0	16.828053
32.0	17.013234
33.0	17.18784
34.0	17.352475
35.0	17.507708
36.0	17.654076
37.0	17.792086
38.0	17.922215
39.0	18.044913
40.0	18.160604
41.0	18.269688
42.0	18.372543
43.0	18.469524
44.0	18.560967
45.0	18.647188
46.0	18.728486
47.0	18.805141
48.0	18.877418
49.0	18.945568
50.0	19.009826
51.0	19.070415
52.0	19.127543
53.0	19.18141
54.0	19.2322
55.0	19.28009
56.0	19.325245
57.0	19.367821
58.0	19.407966
59.0	19.445818
60.0	19.481509
61.0	19.515162
62.0	19.546893
63.0	19.576812
64.0	19.605022
65.0	19.631622
66.0	19.656702
67.0	19.68035
68.0	19.702648
69.0	19.723672
70.0	19.743496
71.0	19.762188
72.0	19.779812
73.0	19.79643
74.0	19.812099
75.0	19.826873
76.0	19.840803
77.0	19.853938
78.0	19.866323
79.0	19.878
80.0	19.889011
81.0	19.899393
82.0	19.909182
83.0	19.918412
84.0	19.927115
85.0	19.935321
86.0	19.943058
87.0	19.950354
88.0	19.957233
89.0	19.963719
90.0	19.969835
91.0	19.975601
92.0	19.981038
93.0	19.986165
94.0	19.990999
95.0	19.995557
96.0	19.999854
97.0	20.003906
98.0	20.007727
99.0	20.011329
100.0	20.014726