## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[gastroesophageal_sphincter-ENCSR260ZIV-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=gastroesophageal_sphincter-ENCSR260ZIV-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=gastroesophageal_sphincter-ENCSR260ZIV-rep1-1.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:18 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	64909790	0	0	7615845	6434328	0.11733	1427471216

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.107554
2.0	2.165873
3.0	3.177146
4.0	4.143464
5.0	5.066826
6.0	5.949142
7.0	6.792235
8.0	7.59785
9.0	8.367653
10.0	9.103235
11.0	9.806118
12.0	10.477755
13.0	11.119536
14.0	11.732787
15.0	12.318777
16.0	12.878718
17.0	13.413767
18.0	13.925031
19.0	14.413569
20.0	14.880388
21.0	15.326456
22.0	15.752695
23.0	16.159986
24.0	16.549172
25.0	16.921056
26.0	17.27641
27.0	17.615966
28.0	17.940428
29.0	18.250467
30.0	18.546723
31.0	18.829809
32.0	19.100312
33.0	19.358789
34.0	19.605777
35.0	19.841785
36.0	20.067301
37.0	20.282793
38.0	20.488705
39.0	20.685463
40.0	20.873476
41.0	21.05313
42.0	21.224798
43.0	21.388834
44.0	21.545579
45.0	21.695356
46.0	21.838475
47.0	21.975231
48.0	22.105909
49.0	22.230777
50.0	22.350094
51.0	22.464108
52.0	22.573053
53.0	22.677155
54.0	22.776629
55.0	22.871681
56.0	22.962508
57.0	23.049298
58.0	23.132229
59.0	23.211474
60.0	23.287196
61.0	23.359552
62.0	23.428691
63.0	23.494757
64.0	23.557886
65.0	23.618209
66.0	23.67585
67.0	23.730929
68.0	23.783559
69.0	23.83385
70.0	23.881905
71.0	23.927824
72.0	23.971702
73.0	24.013629
74.0	24.053692
75.0	24.091975
76.0	24.128555
77.0	24.16351
78.0	24.19691
79.0	24.228826
80.0	24.259323
81.0	24.288465
82.0	24.316311
83.0	24.342919
84.0	24.368344
85.0	24.392639
86.0	24.415854
87.0	24.438037
88.0	24.459234
89.0	24.479489
90.0	24.498843
91.0	24.517337
92.0	24.535009
93.0	24.551895
94.0	24.56803
95.0	24.583449
96.0	24.598181
97.0	24.612259
98.0	24.625711
99.0	24.638566
100.0	24.650848