## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-ENCSR356KRQ-rep2-6.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-ENCSR356KRQ-rep2-6.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-ENCSR356KRQ-rep2-6.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:24 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	10706207	0	0	1035108	628913	0.096683	121621658

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.059705
2.0	2.030113
3.0	2.918749
4.0	3.732504
5.0	4.477687
6.0	5.160077
7.0	5.784965
8.0	6.357197
9.0	6.881209
10.0	7.361065
11.0	7.800486
12.0	8.202879
13.0	8.571364
14.0	8.908799
15.0	9.217799
16.0	9.500761
17.0	9.75988
18.0	9.997163
19.0	10.214452
20.0	10.413431
21.0	10.595643
22.0	10.7625
23.0	10.915297
24.0	11.055219
25.0	11.18335
26.0	11.300685
27.0	11.408131
28.0	11.506524
29.0	11.596626
30.0	11.679135
31.0	11.754692
32.0	11.823882
33.0	11.887241
34.0	11.945262
35.0	11.998393
36.0	12.047047
37.0	12.091601
38.0	12.132401
39.0	12.169763
40.0	12.203977
41.0	12.235307
42.0	12.263998
43.0	12.290271
44.0	12.31433
45.0	12.336361
46.0	12.356536
47.0	12.375012
48.0	12.39193
49.0	12.407422
50.0	12.42161
51.0	12.434601
52.0	12.446498
53.0	12.457392
54.0	12.467369
55.0	12.476505
56.0	12.48487
57.0	12.492531
58.0	12.499547
59.0	12.505971
60.0	12.511854
61.0	12.517241
62.0	12.522174
63.0	12.526692
64.0	12.530829
65.0	12.534617
66.0	12.538086
67.0	12.541263
68.0	12.544172
69.0	12.546835
70.0	12.549275
71.0	12.551509
72.0	12.553554
73.0	12.555428
74.0	12.557143
75.0	12.558714
76.0	12.560152
77.0	12.56147
78.0	12.562676
79.0	12.56378
80.0	12.564792
81.0	12.565718
82.0	12.566567
83.0	12.567343
84.0	12.568055
85.0	12.568706
86.0	12.569302
87.0	12.569849
88.0	12.570349
89.0	12.570807
90.0	12.571226
91.0	12.57161
92.0	12.571962
93.0	12.572284
94.0	12.572579
95.0	12.572849
96.0	12.573097
97.0	12.573323
98.0	12.573531
99.0	12.573721
100.0	12.573894