## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[foreskin_keratinocyte-ENCSR356KRQ-rep2-2.2x36mers.hg38-no-haps.unique.nochrM.bam] OUTPUT=foreskin_keratinocyte-ENCSR356KRQ-rep2-2.2x36mers.hg38-no-haps.unique.nochrM.dedup.bam METRICS_FILE=foreskin_keratinocyte-ENCSR356KRQ-rep2-2.2x36mers.hg38-no-haps.unique.nochrM.dedup.metrics REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Wed Sep 04 10:20:24 PDT 2019

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	25868951	0	0	3255666	1887441	0.125852	202095233

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.073782
2.0	2.018548
3.0	2.849802
4.0	3.58118
5.0	4.224683
6.0	4.790869
7.0	5.289028
8.0	5.727333
9.0	6.112976
10.0	6.452284
11.0	6.750824
12.0	7.013495
13.0	7.244605
14.0	7.447948
15.0	7.626859
16.0	7.784274
17.0	7.922776
18.0	8.044636
19.0	8.151855
20.0	8.246192
21.0	8.329194
22.0	8.402224
23.0	8.466479
24.0	8.523013
25.0	8.572755
26.0	8.616521
27.0	8.655028
28.0	8.688909
29.0	8.718718
30.0	8.744947
31.0	8.768023
32.0	8.788328
33.0	8.806192
34.0	8.82191
35.0	8.83574
36.0	8.847908
37.0	8.858614
38.0	8.868034
39.0	8.876322
40.0	8.883614
41.0	8.89003
42.0	8.895675
43.0	8.900642
44.0	8.905012
45.0	8.908857
46.0	8.91224
47.0	8.915216
48.0	8.917835
49.0	8.92014
50.0	8.922167
51.0	8.923951
52.0	8.92552
53.0	8.926901
54.0	8.928116
55.0	8.929185
56.0	8.930126
57.0	8.930953
58.0	8.931681
59.0	8.932322
60.0	8.932886
61.0	8.933382
62.0	8.933818
63.0	8.934202
64.0	8.93454
65.0	8.934837
66.0	8.935099
67.0	8.935329
68.0	8.935531
69.0	8.935709
70.0	8.935866
71.0	8.936004
72.0	8.936125
73.0	8.936232
74.0	8.936326
75.0	8.936408
76.0	8.936481
77.0	8.936545
78.0	8.936601
79.0	8.936651
80.0	8.936694
81.0	8.936733
82.0	8.936766
83.0	8.936796
84.0	8.936822
85.0	8.936845
86.0	8.936865
87.0	8.936883
88.0	8.936899
89.0	8.936913
90.0	8.936925
91.0	8.936935
92.0	8.936945
93.0	8.936953
94.0	8.93696
95.0	8.936967
96.0	8.936972
97.0	8.936977
98.0	8.936982
99.0	8.936985
100.0	8.936989