File accession File format Output type Experiment accession Assay Biosample term id Biosample term name Biosample type Biosample life stage Biosample sex Biosample Age Biosample organism Biosample treatments Biosample subcellular fraction term name Biosample phase Biosample synchronization stage Experiment target Antibody accession Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate Read length Mapped read length Run type Paired end Paired with Derived from Size Lab md5sum dbxrefs File download URL Assembly Platform Controlled by File Status Audit WARNING Audit INTERNAL_ACTION Audit NOT_COMPLIANT Audit ERROR ENCFF001LPH bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LPM 254630636 Bing Ren, UCSD a92e3f76e06848441e034c48f0df302d https://www.encodeproject.org/files/ENCFF001LPH/@@download/ENCFF001LPH.bam mm9 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LPI bigBed broadPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE ENCFF001YAU 279471 Bing Ren, UCSD d1cb8c080bc04648cdf8dbf52a849f82 https://www.encodeproject.org/files/ENCFF001LPI/@@download/ENCFF001LPI.bigBed mm9 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LPJ bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LPS 873530637 Bing Ren, UCSD 1b674e28c973deb194a0b427c4eb5c1f https://www.encodeproject.org/files/ENCFF001LPJ/@@download/ENCFF001LPJ.bam mm9 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LPL bigWig signal ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 73190584 Bing Ren, UCSD 9e755943847aa96a7109d0354a516815 https://www.encodeproject.org/files/ENCFF001LPL/@@download/ENCFF001LPL.bigWig mm9 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF001LPM fastq reads ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 359116018 Bing Ren, UCSD 97ccc3f41ae802b4224e9a3eea899cda https://www.encodeproject.org/files/ENCFF001LPM/@@download/ENCFF001LPM.fastq.gz HiSeq 2000 /files/ENCFF001KSH/ released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LPS fastq reads ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1220774328 Bing Ren, UCSD 7606703b05bbb6bbde0286b898ff08c4 https://www.encodeproject.org/files/ENCFF001LPS/@@download/ENCFF001LPS.fastq.gz HiSeq 2000 /files/ENCFF001KSJ/ released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001YAU bed broadPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 170766 Bing Ren, UCSD 009162122786abe5a9382ffa4d9325b5 https://www.encodeproject.org/files/ENCFF001YAU/@@download/ENCFF001YAU.bed.gz mm9 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF841PCE bam unfiltered alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPM, ENCFF018NEO 387835816 ENCODE Processing Pipeline 5ca4b8b6de0109bc63dacea1dfca8cf2 https://www.encodeproject.org/files/ENCFF841PCE/@@download/ENCFF841PCE.bam mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF991YKF bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPM, ENCFF018NEO 201792282 ENCODE Processing Pipeline 83a881f355236d32ffd74101e2fb2fcb https://www.encodeproject.org/files/ENCFF991YKF/@@download/ENCFF991YKF.bam mm10 released mild to moderate bottlenecking, moderate library complexity, low read depth, control low read depth, low read length missing unfiltered alignments insufficient read depth ENCFF609TGE bam unfiltered alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPS, ENCFF018NEO 1310128134 ENCODE Processing Pipeline 135379ff952dd0ba9d533e2ba4298120 https://www.encodeproject.org/files/ENCFF609TGE/@@download/ENCFF609TGE.bam mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF385VIZ bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPS, ENCFF018NEO 711917724 ENCODE Processing Pipeline 97516ef8397618e4604908cc73ac5a62 https://www.encodeproject.org/files/ENCFF385VIZ/@@download/ENCFF385VIZ.bam mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, control low read depth ENCFF057RBI bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 156590895 ENCODE Processing Pipeline ffaab7c8bd3b545b02000acc33cf134f https://www.encodeproject.org/files/ENCFF057RBI/@@download/ENCFF057RBI.bigWig mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF521NWX bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 335931215 ENCODE Processing Pipeline 45b19a84605bc73947e777da3cc946de https://www.encodeproject.org/files/ENCFF521NWX/@@download/ENCFF521NWX.bigWig mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF991XOA bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 406353955 ENCODE Processing Pipeline e5fef89a2180b435f8a7d51c919a9e77 https://www.encodeproject.org/files/ENCFF991XOA/@@download/ENCFF991XOA.bigWig mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF870ZXD bigWig signal p-value ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 499736750 ENCODE Processing Pipeline a9ca5343f7bd126ebda885ef3fc6e074 https://www.encodeproject.org/files/ENCFF870ZXD/@@download/ENCFF870ZXD.bigWig mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF473UHO bed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF371CWA, ENCFF543ZOX, ENCFF991YKF 2822090 ENCODE Processing Pipeline 67ce7392277b46ac3ffa37b5371844bd https://www.encodeproject.org/files/ENCFF473UHO/@@download/ENCFF473UHO.bed.gz mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF825DDG bed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 5944125 ENCODE Processing Pipeline 10d704ebe066f0ce0171281681daf4b8 https://www.encodeproject.org/files/ENCFF825DDG/@@download/ENCFF825DDG.bed.gz mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF086FYL bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX 389351901 ENCODE Processing Pipeline 16039ef4e45c593f0d8047f2d69990e6 https://www.encodeproject.org/files/ENCFF086FYL/@@download/ENCFF086FYL.bigWig mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF331JEE bigWig fold change over control ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 456834258 ENCODE Processing Pipeline 0d7a5d43010480a2f906f762a26e2e8f https://www.encodeproject.org/files/ENCFF331JEE/@@download/ENCFF331JEE.bigWig mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF687MGE bigBed narrowPeak optimal idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF143RHK 473131 ENCODE Processing Pipeline 9a0f82c746bcafc669adb1b4cd566d6c https://www.encodeproject.org/files/ENCFF687MGE/@@download/ENCFF687MGE.bigBed mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF070DKG bigBed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF825DDG 13053431 ENCODE Processing Pipeline f3f6be393ea15b82855ff8e88487c350 https://www.encodeproject.org/files/ENCFF070DKG/@@download/ENCFF070DKG.bigBed mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF800MDD bigBed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF910QVG 13090646 ENCODE Processing Pipeline 4ced16ca52f644986f428cb44e5870d3 https://www.encodeproject.org/files/ENCFF800MDD/@@download/ENCFF800MDD.bigBed mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF143RHK bed narrowPeak optimal idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF473UHO, ENCFF547MET, ENCFF825DDG, ENCFF910QVG 233522 ENCODE Processing Pipeline 8193beedd91a6a28ea77b25367df8d14 https://www.encodeproject.org/files/ENCFF143RHK/@@download/ENCFF143RHK.bed.gz mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF910QVG bed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF371CWA, ENCFF385VIZ, ENCFF543ZOX, ENCFF991YKF 6400076 ENCODE Processing Pipeline 06cf7f7b48971c3d95ddb26ea663cf84 https://www.encodeproject.org/files/ENCFF910QVG/@@download/ENCFF910QVG.bed.gz mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF922API bed narrowPeak conservative idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF473UHO, ENCFF547MET, ENCFF825DDG, ENCFF910QVG 212907 ENCODE Processing Pipeline 5b745f3e8940be6370c411fc2e4dfaae https://www.encodeproject.org/files/ENCFF922API/@@download/ENCFF922API.bed.gz mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF970FHD bigBed narrowPeak conservative idr thresholded peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF922API 443579 ENCODE Processing Pipeline c831c9014c29c112bcf039dd2e396f3d https://www.encodeproject.org/files/ENCFF970FHD/@@download/ENCFF970FHD.bigBed mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF620YDJ bigBed narrowPeak peaks ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF473UHO 6253999 ENCODE Processing Pipeline d0819d561a53a790c5cff89e8a59e4aa https://www.encodeproject.org/files/ENCFF620YDJ/@@download/ENCFF620YDJ.bigBed mm10 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LGM bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 1023167542 Bing Ren, UCSD d51ce14d9677cc677dc6f3404fb1bb86 https://www.encodeproject.org/files/ENCFF001LGM/@@download/ENCFF001LGM.bam mm9 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing derived_from ENCFF001LGN bigBed broadPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE ENCFF001XZW 406381 Bing Ren, UCSD 6b0a739ead4ca6e53b8e217e9ec944d7 https://www.encodeproject.org/files/ENCFF001LGN/@@download/ENCFF001LGN.bigBed mm9 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF001LGO bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 1266030345 Bing Ren, UCSD d8d8d2c9a00c50eebf557a49290d4067 https://www.encodeproject.org/files/ENCFF001LGO/@@download/ENCFF001LGO.bam mm9 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing derived_from ENCFF001LGP bigWig signal ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 54643169 Bing Ren, UCSD aa10b7d2c1b4723d28edcd5b9dc02230 https://www.encodeproject.org/files/ENCFF001LGP/@@download/ENCFF001LGP.bigWig mm9 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing derived_from ENCFF001LGV fastq reads ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 1013826871 Bing Ren, UCSD bcd517a44116067870cd1a8db2fb3970 https://www.encodeproject.org/files/ENCFF001LGV/@@download/ENCFF001LGV.fastq.gz HiSeq 2000 /files/ENCFF001JZL/ released inconsistent control read length, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF001LGW fastq reads ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1252220304 Bing Ren, UCSD 12469c44c8aef2fbd876da70ba51a920 https://www.encodeproject.org/files/ENCFF001LGW/@@download/ENCFF001LGW.fastq.gz HiSeq 2000 /files/ENCFF001JZE/ released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF001XZW bed broadPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 296521 Bing Ren, UCSD a6701521e61b87e519e1d8cb2879d890 https://www.encodeproject.org/files/ENCFF001XZW/@@download/ENCFF001XZW.bed.gz mm9 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing derived_from ENCFF781WHH bam unfiltered alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LGV, ENCFF018NEO 1104255517 ENCODE Processing Pipeline f1a82886c2ddf3b8f96041b8cb4d4269 https://www.encodeproject.org/files/ENCFF781WHH/@@download/ENCFF781WHH.bam mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF904VPD bam unfiltered alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LGW, ENCFF018NEO 1365078868 ENCODE Processing Pipeline 2f436354e9a6cd4b0fcbd08b71c6c24e https://www.encodeproject.org/files/ENCFF904VPD/@@download/ENCFF904VPD.bam mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF337AUO bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LGV, ENCFF018NEO 608960718 ENCODE Processing Pipeline 572c3324b3d5a68fdd22a2ac432539a2 https://www.encodeproject.org/files/ENCFF337AUO/@@download/ENCFF337AUO.bam mm10 released control low read depth, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF321PYA bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LGW, ENCFF018NEO 780037647 ENCODE Processing Pipeline b21167a2bd0b966d80efefefbdcc0435 https://www.encodeproject.org/files/ENCFF321PYA/@@download/ENCFF321PYA.bam mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length control low read depth ENCFF239VRO bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 315567943 ENCODE Processing Pipeline e898383318ef5cca5848ab7ccef490cc https://www.encodeproject.org/files/ENCFF239VRO/@@download/ENCFF239VRO.bigWig mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF415USY bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 410805300 ENCODE Processing Pipeline 8f48995ac4cdc55c76ea8354267d5c38 https://www.encodeproject.org/files/ENCFF415USY/@@download/ENCFF415USY.bigWig mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF991NSC bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 370449873 ENCODE Processing Pipeline 3c1495a66767e0003793efb4ba3034dc https://www.encodeproject.org/files/ENCFF991NSC/@@download/ENCFF991NSC.bigWig mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF826OQW bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 533510023 ENCODE Processing Pipeline 3f4060d45255de89e3d2d66ad6786766 https://www.encodeproject.org/files/ENCFF826OQW/@@download/ENCFF826OQW.bigWig mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF891XCC bigBed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF738VPY 12884930 ENCODE Processing Pipeline 2b9228e7c2229628781d870d2d88778c https://www.encodeproject.org/files/ENCFF891XCC/@@download/ENCFF891XCC.bigBed mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF671ONB bigBed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF755GYG 12953935 ENCODE Processing Pipeline a2890513b371a543d16c591fa2548bac https://www.encodeproject.org/files/ENCFF671ONB/@@download/ENCFF671ONB.bigBed mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF978OGN bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF524HSW 573443 ENCODE Processing Pipeline 18bcc4ae81445632510812656fb02c5d https://www.encodeproject.org/files/ENCFF978OGN/@@download/ENCFF978OGN.bigBed mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF360AUF bigWig fold change over control ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 303408409 ENCODE Processing Pipeline 51d083b1faa7de8a397e63c4f86899ba https://www.encodeproject.org/files/ENCFF360AUF/@@download/ENCFF360AUF.bigWig mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF738VPY bed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 5460339 ENCODE Processing Pipeline 618427c867fe7ba134b2523dbf0bb70d https://www.encodeproject.org/files/ENCFF738VPY/@@download/ENCFF738VPY.bed.gz mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF330SNH bed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF321PYA, ENCFF380RIM, ENCFF436OKP 5914290 ENCODE Processing Pipeline 5f3179662d4458b2f588dff5642afaf6 https://www.encodeproject.org/files/ENCFF330SNH/@@download/ENCFF330SNH.bed.gz mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF755GYG bed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 6641531 ENCODE Processing Pipeline 6501dc71e28009867c5ed0feeb8b4145 https://www.encodeproject.org/files/ENCFF755GYG/@@download/ENCFF755GYG.bed.gz mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF524HSW bed narrowPeak conservative idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF330SNH, ENCFF547MET, ENCFF738VPY, ENCFF755GYG 323808 ENCODE Processing Pipeline 1e9481f2b2d05054d9afdc5fc5ff9d8f https://www.encodeproject.org/files/ENCFF524HSW/@@download/ENCFF524HSW.bed.gz mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF253NHY bed narrowPeak optimal idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF330SNH, ENCFF547MET, ENCFF738VPY, ENCFF755GYG 343598 ENCODE Processing Pipeline d60a0cbb723d353c09886c8e13308594 https://www.encodeproject.org/files/ENCFF253NHY/@@download/ENCFF253NHY.bed.gz mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF836NHA bigWig signal p-value ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF321PYA, ENCFF337AUO, ENCFF380RIM, ENCFF436OKP 517418211 ENCODE Processing Pipeline 712085e87bdb23727e48c9d4101256f3 https://www.encodeproject.org/files/ENCFF836NHA/@@download/ENCFF836NHA.bigWig mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF078SFE bigBed narrowPeak peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF330SNH 12925356 ENCODE Processing Pipeline 96773668eefffb1c4483bc6fca3e692c https://www.encodeproject.org/files/ENCFF078SFE/@@download/ENCFF078SFE.bigBed mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF080WDI bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF253NHY 599106 ENCODE Processing Pipeline 748a6c5ca01003ee1f96dad5b622f247 https://www.encodeproject.org/files/ENCFF080WDI/@@download/ENCFF080WDI.bigBed mm10 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF332NMV fastq reads ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1328071421 Richard Myers, HAIB 581c4b94f6a1150c4b82e1e3af1e29fc SRA:SRR5111581 https://www.encodeproject.org/files/ENCFF332NMV/@@download/ENCFF332NMV.fastq.gz HiSeq 2000 /files/ENCFF756GQQ/ released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF657QHM fastq reads ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1452650760 Richard Myers, HAIB d0b9ded6798473e446004863364350f9 SRA:SRR5111580 https://www.encodeproject.org/files/ENCFF657QHM/@@download/ENCFF657QHM.fastq.gz HiSeq 2000 /files/ENCFF756GQQ/ released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF279PCQ bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF657QHM, ENCFF806TVZ 1063288502 ENCODE Processing Pipeline d5db14e605b324a554bf1c33a1bea85f https://www.encodeproject.org/files/ENCFF279PCQ/@@download/ENCFF279PCQ.bam mm10-minimal archived antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF338TRQ bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF332NMV, ENCFF806TVZ 986334312 ENCODE Processing Pipeline 8c522f08123279ba3295c07ee99b16d6 https://www.encodeproject.org/files/ENCFF338TRQ/@@download/ENCFF338TRQ.bam mm10-minimal archived antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF780QOO bam unfiltered alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF332NMV 1350827024 ENCODE Processing Pipeline 07c61cdeb9093d2f32302f8dea461577 https://www.encodeproject.org/files/ENCFF780QOO/@@download/ENCFF780QOO.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF831GJV bam unfiltered alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF657QHM 1472718848 ENCODE Processing Pipeline 568afd6640e2ceebb1e4f907359bce31 https://www.encodeproject.org/files/ENCFF831GJV/@@download/ENCFF831GJV.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF574SPR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF332NMV 986212519 ENCODE Processing Pipeline fcc8d750a649e2bdcf3324c117bc5f65 https://www.encodeproject.org/files/ENCFF574SPR/@@download/ENCFF574SPR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF504LSR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF657QHM 1063146494 ENCODE Processing Pipeline 1746eff7aba0cda39cdf462da537a0f0 https://www.encodeproject.org/files/ENCFF504LSR/@@download/ENCFF504LSR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF630JQR bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 350023451 ENCODE Processing Pipeline b8126c773068dc02cf60ec23b6da80ef https://www.encodeproject.org/files/ENCFF630JQR/@@download/ENCFF630JQR.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF410PVV bed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 5096078 ENCODE Processing Pipeline 1fd9ea151f684cc4f920ee4d0857fc43 https://www.encodeproject.org/files/ENCFF410PVV/@@download/ENCFF410PVV.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF461GJZ bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 381359210 ENCODE Processing Pipeline ce1198792ebcdf7ae7862e78687009b2 https://www.encodeproject.org/files/ENCFF461GJZ/@@download/ENCFF461GJZ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF709NWF bigWig signal p-value ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 377467904 ENCODE Processing Pipeline c8110853023599dc2c135e7c3233797d https://www.encodeproject.org/files/ENCFF709NWF/@@download/ENCFF709NWF.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF616DGB bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 332867137 ENCODE Processing Pipeline 0429c277b3a972e6528af95a595847ba https://www.encodeproject.org/files/ENCFF616DGB/@@download/ENCFF616DGB.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF633LEJ bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF504LSR, ENCFF715CTH 356456496 ENCODE Processing Pipeline b20a14ca9ec62febd714115eb1dd2a88 https://www.encodeproject.org/files/ENCFF633LEJ/@@download/ENCFF633LEJ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF985TTQ bed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 5736172 ENCODE Processing Pipeline c55ab0ba5257d335517c1ccdb3e2b7cf https://www.encodeproject.org/files/ENCFF985TTQ/@@download/ENCFF985TTQ.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF739QBQ bigWig fold change over control ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF504LSR, ENCFF574SPR, ENCFF715CTH 578107703 ENCODE Processing Pipeline e91031b80abb99e8aa72713c97b6fc88 https://www.encodeproject.org/files/ENCFF739QBQ/@@download/ENCFF739QBQ.bigWig mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF707HGS bed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF574SPR, ENCFF715CTH 4995255 ENCODE Processing Pipeline 76cb3926bf9bd430db6e194278407f59 https://www.encodeproject.org/files/ENCFF707HGS/@@download/ENCFF707HGS.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF843LFB bigBed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF707HGS 10976294 ENCODE Processing Pipeline b13ed64b132960432d86b714abec538b https://www.encodeproject.org/files/ENCFF843LFB/@@download/ENCFF843LFB.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF167ZDU bigBed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF410PVV 11044791 ENCODE Processing Pipeline 704d0278efe02a9ce111b6808eb8cdbc https://www.encodeproject.org/files/ENCFF167ZDU/@@download/ENCFF167ZDU.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF187IWI bed narrowPeak conservative idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF410PVV, ENCFF547MET, ENCFF707HGS, ENCFF985TTQ 984356 ENCODE Processing Pipeline 578bddbc63abd93f1ebd2da1a10ebb59 https://www.encodeproject.org/files/ENCFF187IWI/@@download/ENCFF187IWI.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF033EQD bigBed narrowPeak peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF985TTQ 11270877 ENCODE Processing Pipeline 920e1d32450c139a9bdf15531d281da9 https://www.encodeproject.org/files/ENCFF033EQD/@@download/ENCFF033EQD.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF746LSE bigBed narrowPeak conservative idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF187IWI 1555726 ENCODE Processing Pipeline 2103019e9635af95c9eaa0993663db5d https://www.encodeproject.org/files/ENCFF746LSE/@@download/ENCFF746LSE.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF116ZIX bed narrowPeak optimal idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF410PVV, ENCFF547MET, ENCFF707HGS, ENCFF985TTQ 1027357 ENCODE Processing Pipeline eda07a85a8016996d2daf94e04674906 https://www.encodeproject.org/files/ENCFF116ZIX/@@download/ENCFF116ZIX.bed.gz mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF223NZE bigBed narrowPeak optimal idr thresholded peaks ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF116ZIX 1608483 ENCODE Processing Pipeline 7f14d0b79daee234ce9b32495752fbc1 https://www.encodeproject.org/files/ENCFF223NZE/@@download/ENCFF223NZE.bigBed mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF229RMI fastq reads ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1176592691 Richard Myers, HAIB aa66cc22ac82d161ed420256e9db1eb6 SRA:SRR5112437 https://www.encodeproject.org/files/ENCFF229RMI/@@download/ENCFF229RMI.fastq.gz HiSeq 2000 /files/ENCFF299JNL/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF978BAW fastq reads ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1113492994 Richard Myers, HAIB 749b740df71ae9787b8a95ef33638c2c SRA:SRR5112438 https://www.encodeproject.org/files/ENCFF978BAW/@@download/ENCFF978BAW.fastq.gz HiSeq 2000 /files/ENCFF299JNL/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF870EFC bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF806TVZ, ENCFF978BAW 768264889 ENCODE Processing Pipeline 5ec8db8b6350bb71100a2c4151e17579 https://www.encodeproject.org/files/ENCFF870EFC/@@download/ENCFF870EFC.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF065XOC bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF229RMI, ENCFF806TVZ 808081021 ENCODE Processing Pipeline 61240bd50f9a6b8e196518e8a9fefc5f https://www.encodeproject.org/files/ENCFF065XOC/@@download/ENCFF065XOC.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF470MBB bam unfiltered alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF229RMI 1158726795 ENCODE Processing Pipeline 8370b642e4d1dab7b5a43d3d4b5d6845 https://www.encodeproject.org/files/ENCFF470MBB/@@download/ENCFF470MBB.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF111WBO bam unfiltered alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF978BAW 1096755931 ENCODE Processing Pipeline 0566c8b88a062c25822bd3ec48268666 https://www.encodeproject.org/files/ENCFF111WBO/@@download/ENCFF111WBO.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF081EGW bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF978BAW 768147722 ENCODE Processing Pipeline 0439c0b05160aadeab7171194be651a1 https://www.encodeproject.org/files/ENCFF081EGW/@@download/ENCFF081EGW.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF627DYN bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF229RMI 807967242 ENCODE Processing Pipeline 0712832e76da92124e3c872cf04e5a7c https://www.encodeproject.org/files/ENCFF627DYN/@@download/ENCFF627DYN.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF909EDQ bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 348474525 ENCODE Processing Pipeline 6ef3466012d368e859cdd11b51592786 https://www.encodeproject.org/files/ENCFF909EDQ/@@download/ENCFF909EDQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF698RNZ bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 293850585 ENCODE Processing Pipeline db428b72f0e471e9b3914790382f00cc https://www.encodeproject.org/files/ENCFF698RNZ/@@download/ENCFF698RNZ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF671TIQ bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 268709895 ENCODE Processing Pipeline bd58b41fafa94621197c012f7ad025a1 https://www.encodeproject.org/files/ENCFF671TIQ/@@download/ENCFF671TIQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF310FWM bed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 5230046 ENCODE Processing Pipeline ef19176ec04005c6f5d5a52bc65c5ec8 https://www.encodeproject.org/files/ENCFF310FWM/@@download/ENCFF310FWM.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF722SID bigBed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF310FWM 11292007 ENCODE Processing Pipeline 27489b2e39ac7f65b0e94ca150151273 https://www.encodeproject.org/files/ENCFF722SID/@@download/ENCFF722SID.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF702PWG bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 257796471 ENCODE Processing Pipeline 8cf1905d69e533b7f962ae9c2c490701 https://www.encodeproject.org/files/ENCFF702PWG/@@download/ENCFF702PWG.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF906LQJ bigBed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF708ZJC 10706230 ENCODE Processing Pipeline 95693478e1763183e213f2c3e5464520 https://www.encodeproject.org/files/ENCFF906LQJ/@@download/ENCFF906LQJ.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF260DWI bed narrowPeak conservative idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF057OUB, ENCFF310FWM, ENCFF547MET, ENCFF708ZJC 874858 ENCODE Processing Pipeline af638558ba9633c7dfadd2bc4ae7eb4e https://www.encodeproject.org/files/ENCFF260DWI/@@download/ENCFF260DWI.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF112EXI bigWig signal p-value ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 418293386 ENCODE Processing Pipeline 55955345a7c4cbb79cdb5d8dc54674e3 https://www.encodeproject.org/files/ENCFF112EXI/@@download/ENCFF112EXI.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF186QKQ bigWig fold change over control ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF081EGW, ENCFF431RNJ, ENCFF627DYN 448261025 ENCODE Processing Pipeline 2c4d426932e116cbc27296d9077d9478 https://www.encodeproject.org/files/ENCFF186QKQ/@@download/ENCFF186QKQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF708ZJC bed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF081EGW, ENCFF431RNJ 4558568 ENCODE Processing Pipeline 2b0556392c3dcce1cf7408946f2cedb2 https://www.encodeproject.org/files/ENCFF708ZJC/@@download/ENCFF708ZJC.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF057OUB bed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF431RNJ, ENCFF627DYN 4593408 ENCODE Processing Pipeline a92c2e3cfd6e9983f5b5308d4fd504ce https://www.encodeproject.org/files/ENCFF057OUB/@@download/ENCFF057OUB.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF027XBS bigBed narrowPeak peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF057OUB 10765643 ENCODE Processing Pipeline ba2c00cf7fe30bf8c568bda4cc826d68 https://www.encodeproject.org/files/ENCFF027XBS/@@download/ENCFF027XBS.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF362ESI bigBed narrowPeak optimal idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF048VNT 1464730 ENCODE Processing Pipeline 18cbe340792503fce1d836d3d235ebba https://www.encodeproject.org/files/ENCFF362ESI/@@download/ENCFF362ESI.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF048VNT bed narrowPeak optimal idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF057OUB, ENCFF310FWM, ENCFF547MET, ENCFF708ZJC 912745 ENCODE Processing Pipeline a469d67bd20bc36a1ede7f44f7a05567 https://www.encodeproject.org/files/ENCFF048VNT/@@download/ENCFF048VNT.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF042YPB bigBed narrowPeak conservative idr thresholded peaks ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF260DWI 1415854 ENCODE Processing Pipeline 7d19c41449942b7a1788aa0c3e45ff8e https://www.encodeproject.org/files/ENCFF042YPB/@@download/ENCFF042YPB.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF773SFT fastq reads ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1321666970 Richard Myers, HAIB 7f1c4cccc441abb963b29c1f69601a0c SRA:SRR5111042 https://www.encodeproject.org/files/ENCFF773SFT/@@download/ENCFF773SFT.fastq.gz HiSeq 2000 /files/ENCFF691VJX/ released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF414VXY fastq reads ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1275066259 Richard Myers, HAIB 6fea55c06b046aa8b7d2f4319738ef59 SRA:SRR5111041 https://www.encodeproject.org/files/ENCFF414VXY/@@download/ENCFF414VXY.fastq.gz HiSeq 2000 /files/ENCFF691VJX/ released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF449TKR bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF414VXY, ENCFF806TVZ 829994867 ENCODE Processing Pipeline e91dfe5e1f51be2104a6df2661535609 https://www.encodeproject.org/files/ENCFF449TKR/@@download/ENCFF449TKR.bam mm10-minimal archived antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF671YYY bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF773SFT, ENCFF806TVZ 864704311 ENCODE Processing Pipeline 34a29f314d778a64e2bfd3c8e354488d https://www.encodeproject.org/files/ENCFF671YYY/@@download/ENCFF671YYY.bam mm10-minimal archived antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF836ILC bam unfiltered alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF773SFT 1248798984 ENCODE Processing Pipeline ab2edf2fc4c85f5d12c81bf817aa6617 https://www.encodeproject.org/files/ENCFF836ILC/@@download/ENCFF836ILC.bam mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF679LLO bam unfiltered alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF414VXY 1204916507 ENCODE Processing Pipeline 639be99ab90e9d38c9db4eb89aa4cf95 https://www.encodeproject.org/files/ENCFF679LLO/@@download/ENCFF679LLO.bam mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF464ZPC bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF773SFT 864620000 ENCODE Processing Pipeline a92e2b5ebdcfcb46e7a947c387c931a8 https://www.encodeproject.org/files/ENCFF464ZPC/@@download/ENCFF464ZPC.bam mm10 released antibody characterized with exemption, low read depth, moderate library complexity, control low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF039PBK bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF414VXY 829916391 ENCODE Processing Pipeline 3f762d3d24129708c0728da1ca245b69 https://www.encodeproject.org/files/ENCFF039PBK/@@download/ENCFF039PBK.bam mm10 released antibody characterized with exemption, low read depth, moderate library complexity, control low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF473UZT bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 377063707 ENCODE Processing Pipeline 098886ce0455791761af0218e63ae567 https://www.encodeproject.org/files/ENCFF473UZT/@@download/ENCFF473UZT.bigWig mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF179SMD bed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 5181326 ENCODE Processing Pipeline 1267c50169ee45fea9d6bf90ac74321f https://www.encodeproject.org/files/ENCFF179SMD/@@download/ENCFF179SMD.bed.gz mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF685PLR bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 317301536 ENCODE Processing Pipeline 8afa2b1ef7a5f56ac4b345888e92dae7 https://www.encodeproject.org/files/ENCFF685PLR/@@download/ENCFF685PLR.bigWig mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF978OVE bigWig signal p-value ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 367319881 ENCODE Processing Pipeline 15c0b09158d7ac86c8fbd37dd5ecd0a0 https://www.encodeproject.org/files/ENCFF978OVE/@@download/ENCFF978OVE.bigWig mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF203JTB bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 255069612 ENCODE Processing Pipeline 04ddbc12d14abcd4d290e2c31a73a16a https://www.encodeproject.org/files/ENCFF203JTB/@@download/ENCFF203JTB.bigWig mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF661SPC bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 436793374 ENCODE Processing Pipeline 26023d7747701b12bd84c1a7c4e784cb https://www.encodeproject.org/files/ENCFF661SPC/@@download/ENCFF661SPC.bigWig mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF132AEN bigBed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF934ACG 10864936 ENCODE Processing Pipeline bdbe49d60873d3fd7a095be105974082 https://www.encodeproject.org/files/ENCFF132AEN/@@download/ENCFF132AEN.bigBed mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF459NLJ bigWig fold change over control ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF147QOO, ENCFF464ZPC 264679390 ENCODE Processing Pipeline 845fa59253d82bdd825890a59e7b2ccd https://www.encodeproject.org/files/ENCFF459NLJ/@@download/ENCFF459NLJ.bigWig mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF934ACG bed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF039PBK, ENCFF147QOO 5090017 ENCODE Processing Pipeline c56cde087a2d8ab8d6b5c5ea6d1b55fd https://www.encodeproject.org/files/ENCFF934ACG/@@download/ENCFF934ACG.bed.gz mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF445WGT bed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF039PBK, ENCFF147QOO, ENCFF464ZPC 5756267 ENCODE Processing Pipeline 0699b810072edc8131e34201f84ebc9a https://www.encodeproject.org/files/ENCFF445WGT/@@download/ENCFF445WGT.bed.gz mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF775IPY bigBed narrowPeak conservative idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF843CQM 2216368 ENCODE Processing Pipeline a902de514270438b53001ffd24ae9a15 https://www.encodeproject.org/files/ENCFF775IPY/@@download/ENCFF775IPY.bigBed mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF110SCV bigBed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF179SMD 10943369 ENCODE Processing Pipeline e0c1a2a5b8ca9f766a3fba5f426e32f7 https://www.encodeproject.org/files/ENCFF110SCV/@@download/ENCFF110SCV.bigBed mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF843CQM bed narrowPeak conservative idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF179SMD, ENCFF445WGT, ENCFF547MET, ENCFF934ACG 1127701 ENCODE Processing Pipeline 2ac9df70795bc04c653ce8c48d73a060 https://www.encodeproject.org/files/ENCFF843CQM/@@download/ENCFF843CQM.bed.gz mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF074DVX bed narrowPeak optimal idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF179SMD, ENCFF445WGT, ENCFF547MET, ENCFF934ACG 1173213 ENCODE Processing Pipeline c94fd16c74a71bbc5845c38311107108 https://www.encodeproject.org/files/ENCFF074DVX/@@download/ENCFF074DVX.bed.gz mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF809UGV bigBed narrowPeak peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF445WGT 11164834 ENCODE Processing Pipeline ed7cb2701e3d5febb407751fd77d644f https://www.encodeproject.org/files/ENCFF809UGV/@@download/ENCFF809UGV.bigBed mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF787HQO bigBed narrowPeak optimal idr thresholded peaks ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF074DVX 2278621 ENCODE Processing Pipeline 07b2833df3c0e7778f9adef71c61f6f3 https://www.encodeproject.org/files/ENCFF787HQO/@@download/ENCFF787HQO.bigBed mm10 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF524BAT fastq reads ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1114272463 Richard Myers, HAIB 25c9181e232ffe373adf917e5d56be28 SRA:SRR5111943 https://www.encodeproject.org/files/ENCFF524BAT/@@download/ENCFF524BAT.fastq.gz HiSeq 2000 /files/ENCFF285EZB/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF472KEL fastq reads ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 991464388 Richard Myers, HAIB 389c92becfef24c09cfa179c5482fcf7 SRA:SRR5111944 https://www.encodeproject.org/files/ENCFF472KEL/@@download/ENCFF472KEL.fastq.gz HiSeq 2000 /files/ENCFF285EZB/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF778JBR bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF472KEL, ENCFF806TVZ 799393761 ENCODE Processing Pipeline 98a7d322706fbc5d9571d82f2bf90fb8 https://www.encodeproject.org/files/ENCFF778JBR/@@download/ENCFF778JBR.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF287DOM bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF524BAT, ENCFF806TVZ 896151362 ENCODE Processing Pipeline d518c66327685ded74a65b80862c45b1 https://www.encodeproject.org/files/ENCFF287DOM/@@download/ENCFF287DOM.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF970DRN bam unfiltered alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF472KEL 1062789295 ENCODE Processing Pipeline c7d8ed6edc87bc4ac120d41372f90ec5 https://www.encodeproject.org/files/ENCFF970DRN/@@download/ENCFF970DRN.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF160VYC bam unfiltered alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF524BAT 1193783116 ENCODE Processing Pipeline faf0d56cb09e91de85097ba2a986c1aa https://www.encodeproject.org/files/ENCFF160VYC/@@download/ENCFF160VYC.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF090OZS bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF472KEL 799264007 ENCODE Processing Pipeline fcdcce95bdb388d29eecd53730dc4c1a https://www.encodeproject.org/files/ENCFF090OZS/@@download/ENCFF090OZS.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF604FDV bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF524BAT 896015737 ENCODE Processing Pipeline 90ac4307f906cd7895038a40865dd7e3 https://www.encodeproject.org/files/ENCFF604FDV/@@download/ENCFF604FDV.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF126UDE bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 382105302 ENCODE Processing Pipeline b827997367e40e41f456a3564f587972 https://www.encodeproject.org/files/ENCFF126UDE/@@download/ENCFF126UDE.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF398YKS bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 369157395 ENCODE Processing Pipeline 2635ae0be7e53be021dcdf55e01cea19 https://www.encodeproject.org/files/ENCFF398YKS/@@download/ENCFF398YKS.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF693XGU bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 351548770 ENCODE Processing Pipeline 76b7683aefc747e006e1b30a1f847f4d https://www.encodeproject.org/files/ENCFF693XGU/@@download/ENCFF693XGU.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF571UHJ bigWig signal p-value ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 479506383 ENCODE Processing Pipeline 8a25297bb71f458c204176f0cd3e5bba https://www.encodeproject.org/files/ENCFF571UHJ/@@download/ENCFF571UHJ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF518PVA bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 306544838 ENCODE Processing Pipeline 78f2baeaa290a2b0e8c2496d31bb0a14 https://www.encodeproject.org/files/ENCFF518PVA/@@download/ENCFF518PVA.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF176KNA bigWig fold change over control ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 545676684 ENCODE Processing Pipeline 2a7fb8a9637be881ae5037986a11a57e https://www.encodeproject.org/files/ENCFF176KNA/@@download/ENCFF176KNA.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF452VPT bed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF251CDJ, ENCFF604FDV 4998506 ENCODE Processing Pipeline cb30aeeb980d960a9a23f5751bc52a72 https://www.encodeproject.org/files/ENCFF452VPT/@@download/ENCFF452VPT.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF179TEC bigBed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF040OPZ 10825071 ENCODE Processing Pipeline 710fb36ddd7355fe8cf95fb40a22f835 https://www.encodeproject.org/files/ENCFF179TEC/@@download/ENCFF179TEC.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF161NMS bigBed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF095TOF 11312117 ENCODE Processing Pipeline 3c0475e551bdaf6cd7be45e4ed1d0de9 https://www.encodeproject.org/files/ENCFF161NMS/@@download/ENCFF161NMS.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF095TOF bed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF090OZS, ENCFF251CDJ, ENCFF604FDV 5391322 ENCODE Processing Pipeline 5e514aad8fe950ef7f32752b7837de05 https://www.encodeproject.org/files/ENCFF095TOF/@@download/ENCFF095TOF.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF890HAR bigBed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF452VPT 10988866 ENCODE Processing Pipeline b709d32233c902f3b54e1a09755b4a25 https://www.encodeproject.org/files/ENCFF890HAR/@@download/ENCFF890HAR.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF482ZII bigBed narrowPeak conservative idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF917TNQ 1402284 ENCODE Processing Pipeline ae870cc253b05473ddb3233878737774 https://www.encodeproject.org/files/ENCFF482ZII/@@download/ENCFF482ZII.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF040OPZ bed narrowPeak peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF090OZS, ENCFF251CDJ 4698771 ENCODE Processing Pipeline f9d362830255d489314a68eb94d202ae https://www.encodeproject.org/files/ENCFF040OPZ/@@download/ENCFF040OPZ.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF618DXI bed narrowPeak optimal idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF040OPZ, ENCFF095TOF, ENCFF452VPT, ENCFF547MET 886626 ENCODE Processing Pipeline fd91f0be18f3e41b463bbde7375a0198 https://www.encodeproject.org/files/ENCFF618DXI/@@download/ENCFF618DXI.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF917TNQ bed narrowPeak conservative idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF040OPZ, ENCFF095TOF, ENCFF452VPT, ENCFF547MET 855879 ENCODE Processing Pipeline e9b5bb69c5b76d2336b460f6827783a7 https://www.encodeproject.org/files/ENCFF917TNQ/@@download/ENCFF917TNQ.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF463PEK bigBed narrowPeak optimal idr thresholded peaks ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF618DXI 1441434 ENCODE Processing Pipeline 1de8f643a24cc3901c8f4db3fba11f25 https://www.encodeproject.org/files/ENCFF463PEK/@@download/ENCFF463PEK.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF685COX fastq reads ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1017250765 Richard Myers, HAIB a885b6c7c5ecb73ece6493201a9c864e SRA:SRR5111151 https://www.encodeproject.org/files/ENCFF685COX/@@download/ENCFF685COX.fastq.gz HiSeq 2000 /files/ENCFF770PBO/ released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF671DZT fastq reads ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1277894350 Richard Myers, HAIB 644c5848a8ef826af1f6cc8ba3f9c922 SRA:SRR5111152 https://www.encodeproject.org/files/ENCFF671DZT/@@download/ENCFF671DZT.fastq.gz HiSeq 2000 /files/ENCFF770PBO/ released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF812WVE bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF685COX, ENCFF806TVZ 657195056 ENCODE Processing Pipeline 5c9fc9795c5364ee5baa2bd582036f95 https://www.encodeproject.org/files/ENCFF812WVE/@@download/ENCFF812WVE.bam mm10-minimal archived antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF681IOT bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF671DZT, ENCFF806TVZ 807411898 ENCODE Processing Pipeline b60c1f2faf0bfebf71bab0f1cc87c629 https://www.encodeproject.org/files/ENCFF681IOT/@@download/ENCFF681IOT.bam mm10-minimal archived antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF650CYV bam unfiltered alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF685COX 942940778 ENCODE Processing Pipeline 130c4176edefbc8df8ef7eb6e09726c2 https://www.encodeproject.org/files/ENCFF650CYV/@@download/ENCFF650CYV.bam mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF148MSI bam unfiltered alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF671DZT 1186178131 ENCODE Processing Pipeline 956bec6fca892218b07584527f791e4f https://www.encodeproject.org/files/ENCFF148MSI/@@download/ENCFF148MSI.bam mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF812TBN bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF671DZT 807345030 ENCODE Processing Pipeline 70a5235089f57eea2245dc746106137f https://www.encodeproject.org/files/ENCFF812TBN/@@download/ENCFF812TBN.bam mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF906IPW bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF685COX 657128090 ENCODE Processing Pipeline 3ff3f8762053189bc31bc5b5deb96fe3 https://www.encodeproject.org/files/ENCFF906IPW/@@download/ENCFF906IPW.bam mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF924UET bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 381849698 ENCODE Processing Pipeline b0199358bd2b969a00d378a9fcaed228 https://www.encodeproject.org/files/ENCFF924UET/@@download/ENCFF924UET.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF528HLZ bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 341933475 ENCODE Processing Pipeline 8dc2ba55baa7fc6f0851ea236ffa96a1 https://www.encodeproject.org/files/ENCFF528HLZ/@@download/ENCFF528HLZ.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF416UWZ bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 322791298 ENCODE Processing Pipeline b33ff68bf8518bf4a016b3cca16c4c87 https://www.encodeproject.org/files/ENCFF416UWZ/@@download/ENCFF416UWZ.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF030TZD bigWig signal p-value ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 429133867 ENCODE Processing Pipeline e9397a556ebdd3ffee49589fe93e6204 https://www.encodeproject.org/files/ENCFF030TZD/@@download/ENCFF030TZD.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF469JZH bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 277928065 ENCODE Processing Pipeline 350cc32df2c8e1a45ec619020d205a2f https://www.encodeproject.org/files/ENCFF469JZH/@@download/ENCFF469JZH.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF685EPG bigWig fold change over control ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 504771202 ENCODE Processing Pipeline 35645d931469c4690e0f88ff43b87069 https://www.encodeproject.org/files/ENCFF685EPG/@@download/ENCFF685EPG.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF104PYP bed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF697QBG, ENCFF812TBN, ENCFF906IPW 5916227 ENCODE Processing Pipeline 0fe0d6ed24326d4f9768e390ee39fe0e https://www.encodeproject.org/files/ENCFF104PYP/@@download/ENCFF104PYP.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF686MBJ bed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF697QBG, ENCFF812TBN 5221037 ENCODE Processing Pipeline 797ead747ec5d7de359b31b36c6c0fa2 https://www.encodeproject.org/files/ENCFF686MBJ/@@download/ENCFF686MBJ.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF880QHG bed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF697QBG, ENCFF906IPW 5036842 ENCODE Processing Pipeline 2fbc1579d3b5fae9cb7c4e17cd601c4a https://www.encodeproject.org/files/ENCFF880QHG/@@download/ENCFF880QHG.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF878VUM bigBed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF880QHG 11022291 ENCODE Processing Pipeline 29cb12d1302175ebdb238e9a49b32a0d https://www.encodeproject.org/files/ENCFF878VUM/@@download/ENCFF878VUM.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF735IIP bigBed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP 11330426 ENCODE Processing Pipeline 4506a3211aab2c4d81f513afa93d3400 https://www.encodeproject.org/files/ENCFF735IIP/@@download/ENCFF735IIP.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF756ZVS bigBed narrowPeak peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF686MBJ 10971655 ENCODE Processing Pipeline 10a98be2251dfc96d1dd2f5f2d51a588 https://www.encodeproject.org/files/ENCFF756ZVS/@@download/ENCFF756ZVS.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF756ROG bed narrowPeak conservative idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP, ENCFF547MET, ENCFF686MBJ, ENCFF880QHG 1160533 ENCODE Processing Pipeline 08bbbc987c4aca526274c8231381a98e https://www.encodeproject.org/files/ENCFF756ROG/@@download/ENCFF756ROG.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF089DTP bigBed narrowPeak optimal idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF283XCT 2344299 ENCODE Processing Pipeline d699dea194e78b137bdeb57f542e5e86 https://www.encodeproject.org/files/ENCFF089DTP/@@download/ENCFF089DTP.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF822GCD bigBed narrowPeak conservative idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF756ROG 2296039 ENCODE Processing Pipeline 6cd2519e530646dc927ce289f840b2ae https://www.encodeproject.org/files/ENCFF822GCD/@@download/ENCFF822GCD.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF283XCT bed narrowPeak optimal idr thresholded peaks ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF104PYP, ENCFF547MET, ENCFF686MBJ, ENCFF880QHG 1193732 ENCODE Processing Pipeline d4c5cfb2455bb43afd656c8b8b4bc646 https://www.encodeproject.org/files/ENCFF283XCT/@@download/ENCFF283XCT.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF464DYI fastq reads ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 924778484 Richard Myers, HAIB 11c2a22b1dbdc7db05f4c2c7b993ffb4 SRA:SRR5111671 https://www.encodeproject.org/files/ENCFF464DYI/@@download/ENCFF464DYI.fastq.gz HiSeq 2000 /files/ENCFF637HTW/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF310VOQ fastq reads ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 934347819 Richard Myers, HAIB 7f34d08dad0c3949dbb84ab77a7c94e8 SRA:SRR5111672 https://www.encodeproject.org/files/ENCFF310VOQ/@@download/ENCFF310VOQ.fastq.gz HiSeq 2000 /files/ENCFF637HTW/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF231XEH bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF310VOQ, ENCFF806TVZ 747118869 ENCODE Processing Pipeline 628105979ab056eb37deb82343fc7842 https://www.encodeproject.org/files/ENCFF231XEH/@@download/ENCFF231XEH.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF009SLP bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF464DYI, ENCFF806TVZ 776631933 ENCODE Processing Pipeline 996f40fdae42e330378968244606353e https://www.encodeproject.org/files/ENCFF009SLP/@@download/ENCFF009SLP.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF121FBT bam unfiltered alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF464DYI 1010363083 ENCODE Processing Pipeline 218ea7ba6c9da442a0591cb36afd65f8 https://www.encodeproject.org/files/ENCFF121FBT/@@download/ENCFF121FBT.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF223FXW bam unfiltered alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF310VOQ 972622758 ENCODE Processing Pipeline 3a051a1881f98f672ca6854f78e9bf35 https://www.encodeproject.org/files/ENCFF223FXW/@@download/ENCFF223FXW.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF390ZQV bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF310VOQ 747012839 ENCODE Processing Pipeline 281880213c6a21380a29653b3ddb1c64 https://www.encodeproject.org/files/ENCFF390ZQV/@@download/ENCFF390ZQV.bam mm10 released antibody characterized with exemption, low read depth, control low read depth NTR biosample, biological replicates with identical biosample ENCFF371TUB bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF464DYI 776530302 ENCODE Processing Pipeline e448db6f7692c2f59352bfe6b409de7d https://www.encodeproject.org/files/ENCFF371TUB/@@download/ENCFF371TUB.bam mm10 released antibody characterized with exemption, low read depth, control low read depth NTR biosample, biological replicates with identical biosample ENCFF246CLY bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 435464375 ENCODE Processing Pipeline 09f2cca20ede02726a5447a94de5f73b https://www.encodeproject.org/files/ENCFF246CLY/@@download/ENCFF246CLY.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF004PFD bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 302506590 ENCODE Processing Pipeline e96538a3aba7c55b8159eca4aff98a13 https://www.encodeproject.org/files/ENCFF004PFD/@@download/ENCFF004PFD.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF909WHG bigWig signal p-value ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 373929495 ENCODE Processing Pipeline c37d54b77efe691f9281599e8bef69af https://www.encodeproject.org/files/ENCFF909WHG/@@download/ENCFF909WHG.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF800FPD bed narrowPeak conservative idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF107KOO, ENCFF139WDG, ENCFF157SGS, ENCFF547MET 681407 ENCODE Processing Pipeline fe83782b854704968300729e7ce4975b https://www.encodeproject.org/files/ENCFF800FPD/@@download/ENCFF800FPD.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF688LXO bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 289794129 ENCODE Processing Pipeline 36fd7b913a1f6975f3ea9c62d6e6b3ad https://www.encodeproject.org/files/ENCFF688LXO/@@download/ENCFF688LXO.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF863XWX bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 334967890 ENCODE Processing Pipeline 723d1b450fa277a17a6aee05a44e4193 https://www.encodeproject.org/files/ENCFF863XWX/@@download/ENCFF863XWX.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF278NWO bigWig fold change over control ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 566460049 ENCODE Processing Pipeline ec0bdc7302f696cda20e0cc943b2e0b6 https://www.encodeproject.org/files/ENCFF278NWO/@@download/ENCFF278NWO.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF139WDG bed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF371TUB, ENCFF390ZQV, ENCFF531KSN 4861337 ENCODE Processing Pipeline fdf7deb32c29f1937f2c63c4f9e3f610 https://www.encodeproject.org/files/ENCFF139WDG/@@download/ENCFF139WDG.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF077HAE bigBed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF107KOO 10488661 ENCODE Processing Pipeline 446eae02586de6df31ec9324406f7780 https://www.encodeproject.org/files/ENCFF077HAE/@@download/ENCFF077HAE.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF990RYP bigBed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF157SGS 10492235 ENCODE Processing Pipeline 1f8700ed7ef8b54b5d6e8fb123c77b44 https://www.encodeproject.org/files/ENCFF990RYP/@@download/ENCFF990RYP.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF107KOO bed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF390ZQV, ENCFF531KSN 4284889 ENCODE Processing Pipeline 9b64f8f77e282e0519322ff63dd53280 https://www.encodeproject.org/files/ENCFF107KOO/@@download/ENCFF107KOO.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF157SGS bed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF371TUB, ENCFF531KSN 4281727 ENCODE Processing Pipeline 5ea938a65587b3c5fa9bc3fce9d09a0c https://www.encodeproject.org/files/ENCFF157SGS/@@download/ENCFF157SGS.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF711THP bigBed narrowPeak conservative idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF800FPD 1185425 ENCODE Processing Pipeline ae53f66b3120ed38e1a304c0f26f56b6 https://www.encodeproject.org/files/ENCFF711THP/@@download/ENCFF711THP.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF409RRE bed narrowPeak optimal idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF107KOO, ENCFF139WDG, ENCFF157SGS, ENCFF547MET 703430 ENCODE Processing Pipeline 44f9968428b833e87a382501c377e2d1 https://www.encodeproject.org/files/ENCFF409RRE/@@download/ENCFF409RRE.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF130OOT bigBed narrowPeak peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF139WDG 11211134 ENCODE Processing Pipeline 7d80496b4413ac8aa63b5b007bcff311 https://www.encodeproject.org/files/ENCFF130OOT/@@download/ENCFF130OOT.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF568MTS bigBed narrowPeak optimal idr thresholded peaks ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF409RRE 1215311 ENCODE Processing Pipeline cb9f0a3d36a4c88e8a847edfb7484169 https://www.encodeproject.org/files/ENCFF568MTS/@@download/ENCFF568MTS.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF001MVP bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 851685925 Ross Hardison, PennState f16d4c620c344bbc6daa9c62eb94ce1c https://www.encodeproject.org/files/ENCFF001MVP/@@download/ENCFF001MVP.bam mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MVQ bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 1820359042 Ross Hardison, PennState 765b7128388284be505fbb216e91d50e https://www.encodeproject.org/files/ENCFF001MVQ/@@download/ENCFF001MVQ.bam mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MVR bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE ENCFF001YGS 1026425 Ross Hardison, PennState b22251f4516c90356a3b53617f1a6599 https://www.encodeproject.org/files/ENCFF001MVR/@@download/ENCFF001MVR.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF001MVS fastq reads ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 720724742 Ross Hardison, PennState c0c827d51cbd8179ee9e54c090f1f20f https://www.encodeproject.org/files/ENCFF001MVS/@@download/ENCFF001MVS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWB/ released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF001MVT bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YGT 763536 Ross Hardison, PennState 5a71a15d19966cf767125a78d89ea3c6 https://www.encodeproject.org/files/ENCFF001MVT/@@download/ENCFF001MVT.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF001MVU bigBed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YGU 1082256 Ross Hardison, PennState 921f4bf29c308415d1530954c84662d5 https://www.encodeproject.org/files/ENCFF001MVU/@@download/ENCFF001MVU.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF001MVV bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 1804483076 Ross Hardison, PennState 779498b46e896bdfa8229a79f65cc9b4 https://www.encodeproject.org/files/ENCFF001MVV/@@download/ENCFF001MVV.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MVW bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 3434317701 Ross Hardison, PennState f9aa2cd0a025aa72e41f156d40e6a6f2 https://www.encodeproject.org/files/ENCFF001MVW/@@download/ENCFF001MVW.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MVX bigWig signal ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 4832985898 Ross Hardison, PennState beb22db3bac3720b79433ff98bdffd25 https://www.encodeproject.org/files/ENCFF001MVX/@@download/ENCFF001MVX.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MVY fastq reads ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 1454271908 Ross Hardison, PennState 12a2d5932444ee5c3196b5038db710d8 https://www.encodeproject.org/files/ENCFF001MVY/@@download/ENCFF001MVY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MWM/ released inconsistent control read length, mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF001YGS bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 556051 Ross Hardison, PennState 7dbe7b05386947016b3e5458f0328c26 https://www.encodeproject.org/files/ENCFF001YGS/@@download/ENCFF001YGS.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length missing derived_from ENCFF001YGT bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 447880 Ross Hardison, PennState dc8173ec0ccb439bfd0e41fcdf2e434b https://www.encodeproject.org/files/ENCFF001YGT/@@download/ENCFF001YGT.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length missing derived_from ENCFF001YGU bed broadPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 547684 Ross Hardison, PennState 9467e6481229a123230e235fcec693f4 https://www.encodeproject.org/files/ENCFF001YGU/@@download/ENCFF001YGU.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length missing derived_from ENCFF214HNU bam unfiltered alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MVY, ENCFF018NEO 1722384348 ENCODE Processing Pipeline 2356f07d39e894da675913bf49ebed68 https://www.encodeproject.org/files/ENCFF214HNU/@@download/ENCFF214HNU.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF199HTM bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MVY, ENCFF018NEO 1145017532 ENCODE Processing Pipeline 77427bb70e36a17d41bde2be9c7e7680 https://www.encodeproject.org/files/ENCFF199HTM/@@download/ENCFF199HTM.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF685FCF bam unfiltered alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MVS, ENCFF018NEO 913452305 ENCODE Processing Pipeline 6d53441e68051ae86f38183523ae2e8f https://www.encodeproject.org/files/ENCFF685FCF/@@download/ENCFF685FCF.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF720JCR bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MVS, ENCFF018NEO 643432288 ENCODE Processing Pipeline 99532c61cb2d0e26b1766a1363e7ab24 https://www.encodeproject.org/files/ENCFF720JCR/@@download/ENCFF720JCR.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length control low read depth ENCFF005EUZ bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 766386483 ENCODE Processing Pipeline d061ab21ca88847a6b7b78aa04ac1e07 https://www.encodeproject.org/files/ENCFF005EUZ/@@download/ENCFF005EUZ.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF058IYU bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 917647140 ENCODE Processing Pipeline 6b3ce5779391dcf7fae8d1ac4de799e7 https://www.encodeproject.org/files/ENCFF058IYU/@@download/ENCFF058IYU.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF799JEB bigWig signal p-value ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 918083493 ENCODE Processing Pipeline f9a634bfdf6e69aec9e9f6d8faf13069 https://www.encodeproject.org/files/ENCFF799JEB/@@download/ENCFF799JEB.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF344IDA bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 648928905 ENCODE Processing Pipeline 340746a075203f04f8c9ecc081534773 https://www.encodeproject.org/files/ENCFF344IDA/@@download/ENCFF344IDA.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF117JXG bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 772295424 ENCODE Processing Pipeline 6ec2d915eeec37af15d4b31d85a9f74d https://www.encodeproject.org/files/ENCFF117JXG/@@download/ENCFF117JXG.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF498RZJ bigWig fold change over control ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 1071382330 ENCODE Processing Pipeline 43c426fb967bffbc7ccde2739563d634 https://www.encodeproject.org/files/ENCFF498RZJ/@@download/ENCFF498RZJ.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF688HQL bed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 5954185 ENCODE Processing Pipeline 1804aa406503607a7bc61f99cba9fceb https://www.encodeproject.org/files/ENCFF688HQL/@@download/ENCFF688HQL.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF334OBK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF752ZTC 954767 ENCODE Processing Pipeline c501570fa43b5351e23051bdb7860e1f https://www.encodeproject.org/files/ENCFF334OBK/@@download/ENCFF334OBK.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF103KWB bed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK 5884067 ENCODE Processing Pipeline a9a835017a1fb8a6dd3c87f7cd1846a6 https://www.encodeproject.org/files/ENCFF103KWB/@@download/ENCFF103KWB.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF752ZTC bed narrowPeak optimal idr thresholded peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF103KWB, ENCFF439LAM, ENCFF547MET, ENCFF688HQL 548057 ENCODE Processing Pipeline 8cb3df5c51199a58d6fdaa05100139f4 https://www.encodeproject.org/files/ENCFF752ZTC/@@download/ENCFF752ZTC.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF439LAM bed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF199HTM, ENCFF339MRB, ENCFF484XJK, ENCFF720JCR 6538942 ENCODE Processing Pipeline b9e065f27d84bc5ed6e17c352ad87c16 https://www.encodeproject.org/files/ENCFF439LAM/@@download/ENCFF439LAM.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF800YGV bigBed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF103KWB 11412287 ENCODE Processing Pipeline 9db56c64cad37a8aa851fd218fe898f4 https://www.encodeproject.org/files/ENCFF800YGV/@@download/ENCFF800YGV.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF165XYH bigBed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF688HQL 13441555 ENCODE Processing Pipeline a6451905abfd63f80e181e99a6b40520 https://www.encodeproject.org/files/ENCFF165XYH/@@download/ENCFF165XYH.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF956CEA bigBed narrowPeak peaks ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF439LAM 11498240 ENCODE Processing Pipeline b59b4cae2051180800113726cd16e0ed https://www.encodeproject.org/files/ENCFF956CEA/@@download/ENCFF956CEA.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length ENCFF001IDF bigBed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 1 ENCFF001XUU 625115 Barbara Wold, Caltech 0e42f7f0df8297945b42d45849201e23 https://www.encodeproject.org/files/ENCFF001IDF/@@download/ENCFF001IDF.bigBed mm9 released insufficient read length, insufficient read depth ENCFF001IDG fastq reads ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 306507691 Barbara Wold, Caltech 14e46768a62b3240f119f0a39b507f1e https://www.encodeproject.org/files/ENCFF001IDG/@@download/ENCFF001IDG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read length, insufficient read depth ENCFF001IDH fastq reads ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 1 32 single-ended 537117380 Barbara Wold, Caltech 01e97f13c88fb2348614682669c809b8 https://www.encodeproject.org/files/ENCFF001IDH/@@download/ENCFF001IDH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001IEG/, /files/ENCFF001IEH/, /files/ENCFF001IEI/ released insufficient read length, insufficient read depth ENCFF001IDI bam alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 1 896303608 Barbara Wold, Caltech b97e110b6ce6d0d281d395cd29a6bf56 https://www.encodeproject.org/files/ENCFF001IDI/@@download/ENCFF001IDI.bam mm9 released missing derived_from insufficient read length, insufficient read depth ENCFF001IDJ bigWig signal ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 1 63720782 Barbara Wold, Caltech 0df785303d434c54466a44b83be52712 https://www.encodeproject.org/files/ENCFF001IDJ/@@download/ENCFF001IDJ.bigWig mm9 released missing derived_from insufficient read length, insufficient read depth ENCFF001XUU bed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 1 343593 Barbara Wold, Caltech b619c5288c7a48425dac7e4137936d89 https://www.encodeproject.org/files/ENCFF001XUU/@@download/ENCFF001XUU.bed.gz mm9 released missing derived_from insufficient read length, insufficient read depth ENCFF576UTL bam alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IDG, ENCFF001IDH, ENCFF018NEO 288637574 ENCODE Processing Pipeline 3018c323e485490fe662d3bb143736df https://www.encodeproject.org/files/ENCFF576UTL/@@download/ENCFF576UTL.bam mm10 released insufficient read length, insufficient read depth, control low read depth ENCFF632XYW bam unfiltered alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IDG, ENCFF001IDH, ENCFF018NEO 934548232 ENCODE Processing Pipeline db4d8998fb34af33a30ea9a47bd037fc https://www.encodeproject.org/files/ENCFF632XYW/@@download/ENCFF632XYW.bam mm10 released insufficient read length, insufficient read depth ENCFF244USU bigWig signal p-value ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 180134964 ENCODE Processing Pipeline 0b2d330b899cfda57bfb06fa2400da07 https://www.encodeproject.org/files/ENCFF244USU/@@download/ENCFF244USU.bigWig mm10 released insufficient read length, insufficient read depth ENCFF583QSM bigWig fold change over control ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 118353761 ENCODE Processing Pipeline aa31c21519cf9a103f0feed981818e13 https://www.encodeproject.org/files/ENCFF583QSM/@@download/ENCFF583QSM.bigWig mm10 released insufficient read length, insufficient read depth ENCFF883OZA bed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 ENCFF319ZGT, ENCFF576UTL 2339221 ENCODE Processing Pipeline 10d541b1f0bf44feaf43c790ea6e7317 https://www.encodeproject.org/files/ENCFF883OZA/@@download/ENCFF883OZA.bed.gz mm10 released insufficient read length, insufficient read depth ENCFF297NKN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 ENCFF547MET, ENCFF883OZA 267022 ENCODE Processing Pipeline 1803df1e59bc054e0899ee1b332dea86 https://www.encodeproject.org/files/ENCFF297NKN/@@download/ENCFF297NKN.bed.gz mm10 released insufficient read length, insufficient read depth ENCFF838PJT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 ENCFF297NKN 438377 ENCODE Processing Pipeline 729a48c1dc4d5102d42747f50637d513 https://www.encodeproject.org/files/ENCFF838PJT/@@download/ENCFF838PJT.bigBed mm10 released insufficient read length, insufficient read depth ENCFF196FBN bigBed narrowPeak peaks ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 immortalized cell line unknown unknown unknown Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2011-11-23 ENCODE 1 ENCFF883OZA 4799767 ENCODE Processing Pipeline 2037167bca90f145ca842db6078b0100 https://www.encodeproject.org/files/ENCFF196FBN/@@download/ENCFF196FBN.bigBed mm10 released insufficient read length, insufficient read depth ENCFF001LOR bigBed broadPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE ENCFF001YAS 827162 Bing Ren, UCSD 125153bdccabc92198f527c53bfce061 https://www.encodeproject.org/files/ENCFF001LOR/@@download/ENCFF001LOR.bigBed mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LOS bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LPA 1703423943 Bing Ren, UCSD 0f85e2d8bd20ca86df9414e97da5a9de https://www.encodeproject.org/files/ENCFF001LOS/@@download/ENCFF001LOS.bam mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LOT bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LPK 2832777198 Bing Ren, UCSD 667290327ab20013e507ae5d826f2c75 https://www.encodeproject.org/files/ENCFF001LOT/@@download/ENCFF001LOT.bam mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LOU bigWig signal ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 47358322 Bing Ren, UCSD bf15bc7f3cb04f867e1c284831dd4f0d https://www.encodeproject.org/files/ENCFF001LOU/@@download/ENCFF001LOU.bigWig mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LPA fastq reads ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 1857750780 Bing Ren, UCSD 9f7a9bc43db2b961e81c7af0afc1e11c https://www.encodeproject.org/files/ENCFF001LPA/@@download/ENCFF001LPA.fastq.gz HiSeq 2000 /files/ENCFF001KRJ/ released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LPK fastq reads ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 3206007745 Bing Ren, UCSD 253f106c88a5b76658f4546a242089f7 https://www.encodeproject.org/files/ENCFF001LPK/@@download/ENCFF001LPK.fastq.gz HiSeq 2000 /files/ENCFF001KRK/ released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF001YAS bed broadPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 516803 Bing Ren, UCSD a51aff79e8f840f4ee6854e0f51d412c https://www.encodeproject.org/files/ENCFF001YAS/@@download/ENCFF001YAS.bed.gz mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF958NLD bam unfiltered alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPK, ENCFF018NEO 2851545952 ENCODE Processing Pipeline d569a046506fad0fe0a990c4ddd50b42 https://www.encodeproject.org/files/ENCFF958NLD/@@download/ENCFF958NLD.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF081UJZ bam unfiltered alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPA, ENCFF018NEO 1738352194 ENCODE Processing Pipeline 4da5edd3f6578becece088640e2b8eca https://www.encodeproject.org/files/ENCFF081UJZ/@@download/ENCFF081UJZ.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF790KRK bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPA, ENCFF018NEO 254614431 ENCODE Processing Pipeline e1ec01bb207eb33d693da82e2890c587 https://www.encodeproject.org/files/ENCFF790KRK/@@download/ENCFF790KRK.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, control low read depth, severe bottlenecking ENCFF150WRV bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPK, ENCFF018NEO 250266703 ENCODE Processing Pipeline 7dcffb4a6f8c061558dc42a1b97cec12 https://www.encodeproject.org/files/ENCFF150WRV/@@download/ENCFF150WRV.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, control low read depth, severe bottlenecking ENCFF836MWU bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 138900158 ENCODE Processing Pipeline 53ff8d918a036e9fd31325ba0d0a9af6 https://www.encodeproject.org/files/ENCFF836MWU/@@download/ENCFF836MWU.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF871BPC bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 188701432 ENCODE Processing Pipeline 5f4be9b23af4116e6eaffa52b7d89818 https://www.encodeproject.org/files/ENCFF871BPC/@@download/ENCFF871BPC.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF387HCI bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 82458462 ENCODE Processing Pipeline 7541632443b7e81c0609be178ac5b385 https://www.encodeproject.org/files/ENCFF387HCI/@@download/ENCFF387HCI.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF771PZS bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 179358966 ENCODE Processing Pipeline 76fce67d443ba8361d3890c51c6ab2ac https://www.encodeproject.org/files/ENCFF771PZS/@@download/ENCFF771PZS.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF168IVP bed narrowPeak optimal idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF041ZCF, ENCFF547MET, ENCFF641UWK, ENCFF953YSC 571353 ENCODE Processing Pipeline 857d97eb1970552f17bdab0069091f90 https://www.encodeproject.org/files/ENCFF168IVP/@@download/ENCFF168IVP.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF863SNW bigWig fold change over control ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 87996261 ENCODE Processing Pipeline 92a02ccd88c14b0a2f8d54e2346156bf https://www.encodeproject.org/files/ENCFF863SNW/@@download/ENCFF863SNW.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF953YSC bed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF150WRV, ENCFF780TFB 1901306 ENCODE Processing Pipeline 5f38e5068e9ef3b20da10e25ac9d6183 https://www.encodeproject.org/files/ENCFF953YSC/@@download/ENCFF953YSC.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF029VYE bigBed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF953YSC 4140535 ENCODE Processing Pipeline e7e1a7be264494e7b01d0bedc3c6bbf2 https://www.encodeproject.org/files/ENCFF029VYE/@@download/ENCFF029VYE.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF100ZBW bed narrowPeak conservative idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF041ZCF, ENCFF547MET, ENCFF641UWK, ENCFF953YSC 526137 ENCODE Processing Pipeline a0a618bb7ad785e78943ed014d1f5a01 https://www.encodeproject.org/files/ENCFF100ZBW/@@download/ENCFF100ZBW.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF534YTF bigWig signal p-value ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 256373379 ENCODE Processing Pipeline 1bc33b7e590b1100b76a49ab459717c3 https://www.encodeproject.org/files/ENCFF534YTF/@@download/ENCFF534YTF.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF596OZR bigBed narrowPeak optimal idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF168IVP 1089581 ENCODE Processing Pipeline adbb7b95bb838a817f84da8cd631293c https://www.encodeproject.org/files/ENCFF596OZR/@@download/ENCFF596OZR.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF041ZCF bed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF342BIA, ENCFF790KRK 1840948 ENCODE Processing Pipeline cfe7b7876434783be24e9b342efe728e https://www.encodeproject.org/files/ENCFF041ZCF/@@download/ENCFF041ZCF.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF641UWK bed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF150WRV, ENCFF342BIA, ENCFF780TFB, ENCFF790KRK 4037815 ENCODE Processing Pipeline f11bb2e16ac318765cb8345f33e98e2e https://www.encodeproject.org/files/ENCFF641UWK/@@download/ENCFF641UWK.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF473DLH bigBed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF041ZCF 4064541 ENCODE Processing Pipeline c048f845c482d025a41d48d44664f00a https://www.encodeproject.org/files/ENCFF473DLH/@@download/ENCFF473DLH.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF829ESA bigBed narrowPeak peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF641UWK 8148303 ENCODE Processing Pipeline 153795c624fac4c867cd723a0d89900f https://www.encodeproject.org/files/ENCFF829ESA/@@download/ENCFF829ESA.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF594YKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF100ZBW 1019456 ENCODE Processing Pipeline 926a11bf60164542bc92bfc845c246c9 https://www.encodeproject.org/files/ENCFF594YKN/@@download/ENCFF594YKN.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LJK bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LJW 375683432 Bing Ren, UCSD cd36e9deab4f052f4baf3cdf7b04407b https://www.encodeproject.org/files/ENCFF001LJK/@@download/ENCFF001LJK.bam mm9 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LJL bigBed broadPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001YAF 758405 Bing Ren, UCSD 4bc5bfce3084d0073c0c9bac06d002df https://www.encodeproject.org/files/ENCFF001LJL/@@download/ENCFF001LJL.bigBed mm9 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LJM bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LJV 351790353 Bing Ren, UCSD bdd0dd1305182a922b5e9f9d8997e53d https://www.encodeproject.org/files/ENCFF001LJM/@@download/ENCFF001LJM.bam mm9 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LJP bigWig signal ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 65461935 Bing Ren, UCSD 7ec39a77b0f48b834322d73b54c54d04 https://www.encodeproject.org/files/ENCFF001LJP/@@download/ENCFF001LJP.bigWig mm9 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth ENCFF001LJV fastq reads ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 727262572 Bing Ren, UCSD c19df76966fc16da96cc7a1817f9bc3d https://www.encodeproject.org/files/ENCFF001LJV/@@download/ENCFF001LJV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIL/ released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LJW fastq reads ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 33 single-ended 559726846 Bing Ren, UCSD 150a94c66571075c8d7c93234c99265c https://www.encodeproject.org/files/ENCFF001LJW/@@download/ENCFF001LJW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KIM/ released inconsistent control read length, mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001YAF bed broadPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 455018 Bing Ren, UCSD cb9e5b2fce794b3cd151a9423bb79e61 https://www.encodeproject.org/files/ENCFF001YAF/@@download/ENCFF001YAF.bed.gz mm9 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth ENCFF697CPY bam unfiltered alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJV, ENCFF018NEO 761299643 ENCODE Processing Pipeline 8bd123aef2a81b4a089fc5123a6a4c8a https://www.encodeproject.org/files/ENCFF697CPY/@@download/ENCFF697CPY.bam mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF829TDM bam unfiltered alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LJW, ENCFF018NEO 639695117 ENCODE Processing Pipeline 29e837c9b361cfc9a9d83e58881e6f58 https://www.encodeproject.org/files/ENCFF829TDM/@@download/ENCFF829TDM.bam mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF180YAD bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJV, ENCFF018NEO 327606791 ENCODE Processing Pipeline 47cb3f34235d3ca0c05be0f55f5d386c https://www.encodeproject.org/files/ENCFF180YAD/@@download/ENCFF180YAD.bam mm10 released mild to moderate bottlenecking, mixed read lengths, control low read depth, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF198ZVJ bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LJW, ENCFF018NEO 338293825 ENCODE Processing Pipeline 7f7dfc13b916f2c4da41a2c147a74b9f https://www.encodeproject.org/files/ENCFF198ZVJ/@@download/ENCFF198ZVJ.bam mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth, control low read depth ENCFF474GRP bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 257944275 ENCODE Processing Pipeline cd731690ee99025d397982ea4aae76e0 https://www.encodeproject.org/files/ENCFF474GRP/@@download/ENCFF474GRP.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF205YLK bed narrowPeak conservative idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF366XDH, ENCFF447SUY, ENCFF547MET, ENCFF644KRF 519516 ENCODE Processing Pipeline 9b98811fef340eb774acaac74e9fdab8 https://www.encodeproject.org/files/ENCFF205YLK/@@download/ENCFF205YLK.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF616HYA bed narrowPeak optimal idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF366XDH, ENCFF447SUY, ENCFF547MET, ENCFF644KRF 577078 ENCODE Processing Pipeline 460ef0f9b0836dd60f0c1212d21d83fa https://www.encodeproject.org/files/ENCFF616HYA/@@download/ENCFF616HYA.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF639AFA bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 274677793 ENCODE Processing Pipeline 90e1855f00ba6b3ad9a43e0da99a5501 https://www.encodeproject.org/files/ENCFF639AFA/@@download/ENCFF639AFA.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF644KRF bed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 2617929 ENCODE Processing Pipeline d4d8d386a0123c1c0d7bcfaaffca6657 https://www.encodeproject.org/files/ENCFF644KRF/@@download/ENCFF644KRF.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF753TYE bigBed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF644KRF 6433530 ENCODE Processing Pipeline e14c93d8a4d08a9a42a6a164e8eaea06 https://www.encodeproject.org/files/ENCFF753TYE/@@download/ENCFF753TYE.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF893QOZ bigBed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF447SUY 10639180 ENCODE Processing Pipeline 14774412c86acb6fdfc7d2483c4dc714 https://www.encodeproject.org/files/ENCFF893QOZ/@@download/ENCFF893QOZ.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF754RBY bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF616HYA 1051653 ENCODE Processing Pipeline 9906bc3e66a434f30183a738ee606d81 https://www.encodeproject.org/files/ENCFF754RBY/@@download/ENCFF754RBY.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF693RNU bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 258158661 ENCODE Processing Pipeline 63f359b0dbdf5fb828af89674e261b43 https://www.encodeproject.org/files/ENCFF693RNU/@@download/ENCFF693RNU.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF708QMA bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 168568772 ENCODE Processing Pipeline dfccebe9b4430b65998f88813cc1c4dd https://www.encodeproject.org/files/ENCFF708QMA/@@download/ENCFF708QMA.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF987EVU bigWig fold change over control ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 147442410 ENCODE Processing Pipeline f48c5eccd3ed8469800a62cf8a9d121c https://www.encodeproject.org/files/ENCFF987EVU/@@download/ENCFF987EVU.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF366XDH bed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF180YAD, ENCFF262EEH, ENCFF465PJQ 2785197 ENCODE Processing Pipeline 4c2ed94bdbadae711630ed1fa3d99867 https://www.encodeproject.org/files/ENCFF366XDH/@@download/ENCFF366XDH.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF434XPF bigBed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF366XDH 6258262 ENCODE Processing Pipeline 28dca9ad0f848325589222059ed9e7a4 https://www.encodeproject.org/files/ENCFF434XPF/@@download/ENCFF434XPF.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF089NKC bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF205YLK 968125 ENCODE Processing Pipeline 212d108894489934ce88beba17331ae7 https://www.encodeproject.org/files/ENCFF089NKC/@@download/ENCFF089NKC.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF824BON bigWig signal p-value ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 322913450 ENCODE Processing Pipeline e476278b98330ba3b5bc38e4fa2c728a https://www.encodeproject.org/files/ENCFF824BON/@@download/ENCFF824BON.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF447SUY bed narrowPeak peaks ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF180YAD, ENCFF198ZVJ, ENCFF262EEH, ENCFF465PJQ 4673717 ENCODE Processing Pipeline 9bef35af9b60a397d777ca3c6a6b42f2 https://www.encodeproject.org/files/ENCFF447SUY/@@download/ENCFF447SUY.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LNI bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LNT 375067465 Bing Ren, UCSD 0589072114913501918356f5b55490f8 https://www.encodeproject.org/files/ENCFF001LNI/@@download/ENCFF001LNI.bam mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LNK bigBed broadPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001YAO 479362 Bing Ren, UCSD 63720ee09bef38cefb496ed65a10e3c1 https://www.encodeproject.org/files/ENCFF001LNK/@@download/ENCFF001LNK.bigBed mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LNL bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LNS 376392816 Bing Ren, UCSD e8a4452954df6e5fb34946dd8d36c8eb https://www.encodeproject.org/files/ENCFF001LNL/@@download/ENCFF001LNL.bam mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LNM bigWig signal ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 58594405 Bing Ren, UCSD c611ddf16528e1706fcaaf7fe555895a https://www.encodeproject.org/files/ENCFF001LNM/@@download/ENCFF001LNM.bigWig mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF001LNS fastq reads ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 880486987 Bing Ren, UCSD 44dd98606d96b8baf6c672f64df17c97 https://www.encodeproject.org/files/ENCFF001LNS/@@download/ENCFF001LNS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOV/ released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LNT fastq reads ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 870712159 Bing Ren, UCSD 358761a2b5d436ad8f2793879ae933e6 https://www.encodeproject.org/files/ENCFF001LNT/@@download/ENCFF001LNT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KOQ/ released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001YAO bed broadPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 338933 Bing Ren, UCSD 1ad12ced14c54ca786c243175745ea7d https://www.encodeproject.org/files/ENCFF001YAO/@@download/ENCFF001YAO.bed.gz mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF864IVP bam unfiltered alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNT, ENCFF018NEO 936384002 ENCODE Processing Pipeline 6f77325a8a67518136f68daaa8efaa3b https://www.encodeproject.org/files/ENCFF864IVP/@@download/ENCFF864IVP.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF554XVK bam unfiltered alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNS, ENCFF018NEO 908493499 ENCODE Processing Pipeline f3b42ad9d6e5afa837e29d2be4fab114 https://www.encodeproject.org/files/ENCFF554XVK/@@download/ENCFF554XVK.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF597HPS bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNT, ENCFF018NEO 382783589 ENCODE Processing Pipeline ee7679aba57565384a9287ebcb8e687b https://www.encodeproject.org/files/ENCFF597HPS/@@download/ENCFF597HPS.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth control extremely low read depth ENCFF654LDN bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNS, ENCFF018NEO 353968665 ENCODE Processing Pipeline 40a133f777ed535db675c746eddcfcdd https://www.encodeproject.org/files/ENCFF654LDN/@@download/ENCFF654LDN.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, control low read depth ENCFF168RMI bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 136308262 ENCODE Processing Pipeline 460c9eeaf62cf77c5a779d39931c0196 https://www.encodeproject.org/files/ENCFF168RMI/@@download/ENCFF168RMI.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF367LMD bed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 2073420 ENCODE Processing Pipeline e26c087a0afaad67ce0f950d21359bfc https://www.encodeproject.org/files/ENCFF367LMD/@@download/ENCFF367LMD.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF967TRS bed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 1691191 ENCODE Processing Pipeline 59f06ef9aa1f9d701fdf508e24767b85 https://www.encodeproject.org/files/ENCFF967TRS/@@download/ENCFF967TRS.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF695XKZ bed narrowPeak conservative idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF367LMD, ENCFF547MET, ENCFF678KWQ, ENCFF967TRS 427494 ENCODE Processing Pipeline bda6dc1e2f0afd65f75f8a97ed5a69c6 https://www.encodeproject.org/files/ENCFF695XKZ/@@download/ENCFF695XKZ.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF678KWQ bed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 2168111 ENCODE Processing Pipeline dd1256d9fd84bd087f77942eb7cf27ff https://www.encodeproject.org/files/ENCFF678KWQ/@@download/ENCFF678KWQ.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF008AYP bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 238227314 ENCODE Processing Pipeline c2c7bf3ab901ca117688a7b20805fed1 https://www.encodeproject.org/files/ENCFF008AYP/@@download/ENCFF008AYP.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF176AHK bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF493MBH, ENCFF654LDN, ENCFF738EUE 120813518 ENCODE Processing Pipeline da5032cc03fa2f2ac92d5a92beaa7c42 https://www.encodeproject.org/files/ENCFF176AHK/@@download/ENCFF176AHK.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF870YTE bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 240545943 ENCODE Processing Pipeline 893441dc9d6a74d103bfebeb7578733b https://www.encodeproject.org/files/ENCFF870YTE/@@download/ENCFF870YTE.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF538KBR bigWig fold change over control ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF493MBH, ENCFF597HPS, ENCFF654LDN, ENCFF738EUE 229026468 ENCODE Processing Pipeline 24bfc3b08a1b4f33b5d9d09745e75db3 https://www.encodeproject.org/files/ENCFF538KBR/@@download/ENCFF538KBR.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF575GVY bigBed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF678KWQ 4690753 ENCODE Processing Pipeline 6a6ffe8c4245a46d22636d192585b8c6 https://www.encodeproject.org/files/ENCFF575GVY/@@download/ENCFF575GVY.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF634XVK bigBed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF367LMD 4331148 ENCODE Processing Pipeline bf3a59d4bac3c75db56a79e7b57e565f https://www.encodeproject.org/files/ENCFF634XVK/@@download/ENCFF634XVK.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF787KIM bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF695XKZ 854411 ENCODE Processing Pipeline df74c7a41347b87db9c1896ab7e9ef09 https://www.encodeproject.org/files/ENCFF787KIM/@@download/ENCFF787KIM.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF605YVN bed narrowPeak optimal idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF367LMD, ENCFF547MET, ENCFF678KWQ, ENCFF967TRS 488435 ENCODE Processing Pipeline 2425e89fc649dea77d09fe3ed033bd3e https://www.encodeproject.org/files/ENCFF605YVN/@@download/ENCFF605YVN.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF171COP bigWig signal p-value ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF493MBH, ENCFF597HPS, ENCFF738EUE 196445285 ENCODE Processing Pipeline 356c1f28182b9612cbac9ef585a3eaaa https://www.encodeproject.org/files/ENCFF171COP/@@download/ENCFF171COP.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF826REH bigBed narrowPeak peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF967TRS 3968024 ENCODE Processing Pipeline 6102292b8c43ba0e66d26e064a6b6cb0 https://www.encodeproject.org/files/ENCFF826REH/@@download/ENCFF826REH.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF210RWO bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF605YVN 946650 ENCODE Processing Pipeline ae8b344f6e069b202cb0945655aab06c https://www.encodeproject.org/files/ENCFF210RWO/@@download/ENCFF210RWO.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LQQ bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LQY 553618471 Bing Ren, UCSD 565290d2c1af09a65de30f4abcaa472e https://www.encodeproject.org/files/ENCFF001LQQ/@@download/ENCFF001LQQ.bam mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF001LQS bigBed broadPeak peaks ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001YAY 464421 Bing Ren, UCSD 2c821a005a29886dfda31c7e20896ae2 https://www.encodeproject.org/files/ENCFF001LQS/@@download/ENCFF001LQS.bigBed mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF001LQT bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LRE 579883819 Bing Ren, UCSD f17ee9e012d6f5a5e2d8a711c7e49da0 https://www.encodeproject.org/files/ENCFF001LQT/@@download/ENCFF001LQT.bam mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF001LQX bigWig signal ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 54492570 Bing Ren, UCSD 92133721884bb65a9a82a4e7e7008b98 https://www.encodeproject.org/files/ENCFF001LQX/@@download/ENCFF001LQX.bigWig mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth extremely low read depth ENCFF001LQY fastq reads ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 30 single-ended 526337920 Bing Ren, UCSD 8948a3cedaaaf925cd4fcf3543189c7f https://www.encodeproject.org/files/ENCFF001LQY/@@download/ENCFF001LQY.fastq.gz HiSeq 2000 /files/ENCFF001KVR/ released inconsistent control read length, inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF001LRE fastq reads ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 30 single-ended 612267265 Bing Ren, UCSD 3c7ecddc91aeddb64776ac104667427d https://www.encodeproject.org/files/ENCFF001LRE/@@download/ENCFF001LRE.fastq.gz HiSeq 2000 /files/ENCFF001KWE/ released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF001YAY bed broadPeak peaks ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 323502 Bing Ren, UCSD 016f8c507fc27e2063b8dd6f5617402f https://www.encodeproject.org/files/ENCFF001YAY/@@download/ENCFF001YAY.bed.gz mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth extremely low read depth ENCFF497WZO bam unfiltered alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRE, ENCFF018NEO 560518743 ENCODE Processing Pipeline 77b9eecd6a1886d0f63ea8675289392b https://www.encodeproject.org/files/ENCFF497WZO/@@download/ENCFF497WZO.bam mm10 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF581CEH bam unfiltered alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LQY, ENCFF018NEO 607380921 ENCODE Processing Pipeline 5ea99b2f0c1b2a07430a8e257f20f5e7 https://www.encodeproject.org/files/ENCFF581CEH/@@download/ENCFF581CEH.bam mm10 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF137QSX bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRE, ENCFF018NEO 55417723 ENCODE Processing Pipeline f3528de15ec5be78e7e549d22878b10b https://www.encodeproject.org/files/ENCFF137QSX/@@download/ENCFF137QSX.bam mm10 released inconsistent platforms, control low read depth, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF409DKD bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LQY, ENCFF018NEO 356592575 ENCODE Processing Pipeline 9d0fe55ecb2328ebcb7afb0034933019 https://www.encodeproject.org/files/ENCFF409DKD/@@download/ENCFF409DKD.bam mm10 released inconsistent platforms, control low read depth, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth extremely low read depth ENCFF001LLR bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LLY 885224901 Bing Ren, UCSD ea1db9b6b5e548783834e86919e5a64e https://www.encodeproject.org/files/ENCFF001LLR/@@download/ENCFF001LLR.bam mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LLO bigBed broadPeak peaks ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE ENCFF001YAK 502338 Bing Ren, UCSD 88bffe824cb934f889273603832c3f85 https://www.encodeproject.org/files/ENCFF001LLO/@@download/ENCFF001LLO.bigBed mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LLQ bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LLV 381991534 Bing Ren, UCSD 308ec776bbeed993133d922d91c54d6d https://www.encodeproject.org/files/ENCFF001LLQ/@@download/ENCFF001LLQ.bam mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LLT bigWig signal ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 57513472 Bing Ren, UCSD 3f51ebd80919f3dce9e25edfbc9fa2ec https://www.encodeproject.org/files/ENCFF001LLT/@@download/ENCFF001LLT.bigWig mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status, missing derived_from insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LLV fastq reads ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 379068820 Bing Ren, UCSD 8b30aab1e0b73212012690f6b39899a8 https://www.encodeproject.org/files/ENCFF001LLV/@@download/ENCFF001LLV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KLI/ released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001LLY fastq reads ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 914808631 Bing Ren, UCSD f9d59cca1ae133f7f6289c5a4951ece5 https://www.encodeproject.org/files/ENCFF001LLY/@@download/ENCFF001LLY.fastq.gz HiSeq 2000 /files/ENCFF044CWG/ released inconsistent control read length, inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001YAK bed broadPeak peaks ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 371652 Bing Ren, UCSD 541d9264f358bc568d3e1154a29ca690 https://www.encodeproject.org/files/ENCFF001YAK/@@download/ENCFF001YAK.bed.gz mm9 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status, missing derived_from insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF104TPG bam unfiltered alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LLV, ENCFF018NEO 400434569 ENCODE Processing Pipeline b74bc8d595373a32f835709d1e416abf https://www.encodeproject.org/files/ENCFF104TPG/@@download/ENCFF104TPG.bam mm10 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF600RDL bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LLV, ENCFF018NEO 177489057 ENCODE Processing Pipeline 2b7d831bb64e01bc1ea7dc5d441ceac1 https://www.encodeproject.org/files/ENCFF600RDL/@@download/ENCFF600RDL.bam mm10 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking control extremely low read depth ENCFF428ARW bam unfiltered alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LLY, ENCFF018NEO 915213557 ENCODE Processing Pipeline 0e6fe08a54a0b2194ef0f681ed414a17 https://www.encodeproject.org/files/ENCFF428ARW/@@download/ENCFF428ARW.bam mm10 released inconsistent platforms, mild to moderate bottlenecking missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF197ZXT bam alignments ENCSR000CEB ChIP-seq UBERON:0002101 limb tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LLY, ENCFF018NEO 220125330 ENCODE Processing Pipeline a5ee6d7cfd2a22f1df51cf03bbbc974b https://www.encodeproject.org/files/ENCFF197ZXT/@@download/ENCFF197ZXT.bam mm10 released inconsistent platforms, mild to moderate bottlenecking, control low read depth missing unfiltered alignments, mismatched status insufficient read length, poor library complexity, insufficient read depth, severe bottlenecking ENCFF160DPX fastq reads ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1098463981 Richard Myers, HAIB 465832429aad4619bda4baefaeead1b2 SRA:SRR5112343 https://www.encodeproject.org/files/ENCFF160DPX/@@download/ENCFF160DPX.fastq.gz HiSeq 2000 /files/ENCFF494VBT/ released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF323QPQ fastq reads ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1638750335 Richard Myers, HAIB 5ef3412bf50e7d9040bd560abd09f431 SRA:SRR5112342 https://www.encodeproject.org/files/ENCFF323QPQ/@@download/ENCFF323QPQ.fastq.gz HiSeq 2000 /files/ENCFF494VBT/ released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF721EAL bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF160DPX, ENCFF806TVZ 818881245 ENCODE Processing Pipeline 736682ece8427aa237d4736c40830b58 https://www.encodeproject.org/files/ENCFF721EAL/@@download/ENCFF721EAL.bam mm10-minimal archived antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF431QXA bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF323QPQ, ENCFF806TVZ 1145204991 ENCODE Processing Pipeline d3d7fc93d4a43ebf96ec19ab366d5aa0 https://www.encodeproject.org/files/ENCFF431QXA/@@download/ENCFF431QXA.bam mm10-minimal archived antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF900BCK bam unfiltered alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF160DPX 1105735412 ENCODE Processing Pipeline c15ff0e17937baa9033c624b9544d707 https://www.encodeproject.org/files/ENCFF900BCK/@@download/ENCFF900BCK.bam mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF164BCI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF323QPQ 1145124183 ENCODE Processing Pipeline 1e9280a53f99f767bd2c49c49d0a6432 https://www.encodeproject.org/files/ENCFF164BCI/@@download/ENCFF164BCI.bam mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF820ADI bam unfiltered alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF323QPQ 1644570384 ENCODE Processing Pipeline 50689c6cf19c988609332a96cafd3507 https://www.encodeproject.org/files/ENCFF820ADI/@@download/ENCFF820ADI.bam mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF262NGI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF160DPX 818813553 ENCODE Processing Pipeline bd23e3d0832e0da66339261d251459ee https://www.encodeproject.org/files/ENCFF262NGI/@@download/ENCFF262NGI.bam mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF207OHJ bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 383789164 ENCODE Processing Pipeline 019ef069f9e499a49e4af13933b24f0d https://www.encodeproject.org/files/ENCFF207OHJ/@@download/ENCFF207OHJ.bigWig mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF433ZAW bed narrowPeak conservative idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF039DHV, ENCFF169BDL, ENCFF547MET, ENCFF726SOK 1036085 ENCODE Processing Pipeline 28e3c64303b8e7e448aa0e2a9e435783 https://www.encodeproject.org/files/ENCFF433ZAW/@@download/ENCFF433ZAW.bed.gz mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF057GJF bed narrowPeak optimal idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF039DHV, ENCFF169BDL, ENCFF547MET, ENCFF726SOK 1083288 ENCODE Processing Pipeline 4d47e1a1b466b510769fd75fbead8492 https://www.encodeproject.org/files/ENCFF057GJF/@@download/ENCFF057GJF.bed.gz mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF163KJU bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 618540015 ENCODE Processing Pipeline a41b4c054e95946a4b7f5ef116f92c53 https://www.encodeproject.org/files/ENCFF163KJU/@@download/ENCFF163KJU.bigWig mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF699FQY bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 507008471 ENCODE Processing Pipeline d833f0ba51fb35710bca6c902852f70b https://www.encodeproject.org/files/ENCFF699FQY/@@download/ENCFF699FQY.bigWig mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF818BGB bigBed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF169BDL 11241482 ENCODE Processing Pipeline f7ed4a2d2f99bec9cfb6da875d6f8630 https://www.encodeproject.org/files/ENCFF818BGB/@@download/ENCFF818BGB.bigBed mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF562MDY bigBed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF039DHV 11188447 ENCODE Processing Pipeline dbbf2654348a7266055408a9fcd6e000 https://www.encodeproject.org/files/ENCFF562MDY/@@download/ENCFF562MDY.bigBed mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF854MNX bigBed narrowPeak conservative idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF433ZAW 1610432 ENCODE Processing Pipeline 10469ef94481c703d572da10780a94ea https://www.encodeproject.org/files/ENCFF854MNX/@@download/ENCFF854MNX.bigBed mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF113BDJ bigBed narrowPeak optimal idr thresholded peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF057GJF 2143739 ENCODE Processing Pipeline 8e8293953748feb401808499b7806f4e https://www.encodeproject.org/files/ENCFF113BDJ/@@download/ENCFF113BDJ.bigBed mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF309UUX bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 579601515 ENCODE Processing Pipeline 2736c09e01205752f85b819b2a501fb5 https://www.encodeproject.org/files/ENCFF309UUX/@@download/ENCFF309UUX.bigWig mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF169BDL bed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF164BCI, ENCFF574XMX 5489873 ENCODE Processing Pipeline 26271235fb0bf14240483f5b3023dd70 https://www.encodeproject.org/files/ENCFF169BDL/@@download/ENCFF169BDL.bed.gz mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF726SOK bed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 6089229 ENCODE Processing Pipeline 4da5bd1179a7707dd80be3179d35d448 https://www.encodeproject.org/files/ENCFF726SOK/@@download/ENCFF726SOK.bed.gz mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF844FZQ bigWig signal p-value ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 529893748 ENCODE Processing Pipeline 5affc0e4037832229ed3a7db4852c1b2 https://www.encodeproject.org/files/ENCFF844FZQ/@@download/ENCFF844FZQ.bigWig mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF581XWU bigWig fold change over control ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF164BCI, ENCFF262NGI, ENCFF574XMX 746046497 ENCODE Processing Pipeline 6b533e2b6d553496fdf025377c97500d https://www.encodeproject.org/files/ENCFF581XWU/@@download/ENCFF581XWU.bigWig mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF039DHV bed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF262NGI, ENCFF574XMX 5268750 ENCODE Processing Pipeline 53b714363c6e4bba3e1019bb99f87003 https://www.encodeproject.org/files/ENCFF039DHV/@@download/ENCFF039DHV.bed.gz mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF973JHQ bigBed narrowPeak peaks ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF726SOK 11297008 ENCODE Processing Pipeline 4ecb8ad1c4e2194b1c7618f7e399421e https://www.encodeproject.org/files/ENCFF973JHQ/@@download/ENCFF973JHQ.bigBed mm10 released antibody characterized with exemption, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF001NGB bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NGE 405620721 Michael Snyder, Stanford 011f2fc5cef25e4d3f41d5e9a1973e2d https://www.encodeproject.org/files/ENCFF001NGB/@@download/ENCFF001NGB.bam mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF001NGD bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE ENCFF001YHW 3884553 Michael Snyder, Stanford d2041b4278f93aa1b0d9d1ecfcb6ad62 https://www.encodeproject.org/files/ENCFF001NGD/@@download/ENCFF001NGD.bigBed mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF001NGE fastq reads ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 804002258 Michael Snyder, Stanford 272ab82012b2eb959a176cfce71c108d https://www.encodeproject.org/files/ENCFF001NGE/@@download/ENCFF001NGE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF001NGG fastq reads ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 858847445 Michael Snyder, Stanford d35ff42974e72d764fc99ccf2755359e https://www.encodeproject.org/files/ENCFF001NGG/@@download/ENCFF001NGG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NIM/ released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF001NGI bigWig signal ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 303666172 Michael Snyder, Stanford bccc5b2f53b7022bf9e3b85fd85b135b https://www.encodeproject.org/files/ENCFF001NGI/@@download/ENCFF001NGI.bigWig mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from ENCFF001NGJ bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NGG 412790445 Michael Snyder, Stanford 82a6a5667f1f4aebce1a248dcf935b52 https://www.encodeproject.org/files/ENCFF001NGJ/@@download/ENCFF001NGJ.bam mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF001YHW bed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1538306 Michael Snyder, Stanford 0fd36ea125257b6e698325d97cb3e2e1 https://www.encodeproject.org/files/ENCFF001YHW/@@download/ENCFF001YHW.bed.gz mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from ENCFF286DUD bam unfiltered alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGE, ENCFF018NEO 836449151 ENCODE Processing Pipeline 2e25339ab90ad1e2949b0a6afcaa037a https://www.encodeproject.org/files/ENCFF286DUD/@@download/ENCFF286DUD.bam mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF292PNZ bam unfiltered alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGG, ENCFF018NEO 870081064 ENCODE Processing Pipeline 4e4ee63d6041c48664ec88590d5e913a https://www.encodeproject.org/files/ENCFF292PNZ/@@download/ENCFF292PNZ.bam mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF131PLT bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGG, ENCFF018NEO 562408943 ENCODE Processing Pipeline dbd4fedfe0f411370eede0734eae9e51 https://www.encodeproject.org/files/ENCFF131PLT/@@download/ENCFF131PLT.bam mm10 released inconsistent target of control experiment, inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF449KFK bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGE, ENCFF018NEO 565439135 ENCODE Processing Pipeline 7c11067724dcab9ca6209c59cae0ac52 https://www.encodeproject.org/files/ENCFF449KFK/@@download/ENCFF449KFK.bam mm10 released inconsistent target of control experiment, inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF189YQN bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 231337681 ENCODE Processing Pipeline ed3164d5970faac679961e66ac0fa19d https://www.encodeproject.org/files/ENCFF189YQN/@@download/ENCFF189YQN.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF456ZQW bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 232144935 ENCODE Processing Pipeline 3f24ce3f641b27fb8686f5b6f739afb1 https://www.encodeproject.org/files/ENCFF456ZQW/@@download/ENCFF456ZQW.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF696AUE bigWig signal p-value ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 215391653 ENCODE Processing Pipeline 670b46875facc1d6477b5883a113e1dd https://www.encodeproject.org/files/ENCFF696AUE/@@download/ENCFF696AUE.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF641JPY bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 240285666 ENCODE Processing Pipeline a6cd0070734d27c2923e7d44b7939bf5 https://www.encodeproject.org/files/ENCFF641JPY/@@download/ENCFF641JPY.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF504YYO bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 237586020 ENCODE Processing Pipeline 2b180adb4bf324bb43df0a249ebddad8 https://www.encodeproject.org/files/ENCFF504YYO/@@download/ENCFF504YYO.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF021GBR bed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 3001862 ENCODE Processing Pipeline bfbe6cd57cd7f2924b1db8657a77e831 https://www.encodeproject.org/files/ENCFF021GBR/@@download/ENCFF021GBR.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF025UEN bigWig fold change over control ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF131PLT, ENCFF339ZWC, ENCFF449KFK 406550892 ENCODE Processing Pipeline 22c79636d1422b70effc0084a724c17a https://www.encodeproject.org/files/ENCFF025UEN/@@download/ENCFF025UEN.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF892SBI bed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF339ZWC, ENCFF449KFK 4650878 ENCODE Processing Pipeline 30bfb8a28dc5b4b72832c74c09ea15aa https://www.encodeproject.org/files/ENCFF892SBI/@@download/ENCFF892SBI.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF720ZXB bed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF131PLT, ENCFF339ZWC 4675280 ENCODE Processing Pipeline 1ebcc4d2149810c9bf57d2c44a1fc569 https://www.encodeproject.org/files/ENCFF720ZXB/@@download/ENCFF720ZXB.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF860CJT bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF892SBI 10403895 ENCODE Processing Pipeline 19673f9c8465418ca6ca29d68eb29fe8 https://www.encodeproject.org/files/ENCFF860CJT/@@download/ENCFF860CJT.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF408BFU bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF720ZXB 10489720 ENCODE Processing Pipeline 33e1ac5b76742399f37d6e6273307656 https://www.encodeproject.org/files/ENCFF408BFU/@@download/ENCFF408BFU.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF242HXC bigBed narrowPeak peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR 5940737 ENCODE Processing Pipeline 3a28cae7ac8907e3a5cecfd09ae80dcf https://www.encodeproject.org/files/ENCFF242HXC/@@download/ENCFF242HXC.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF504KIJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF612IQZ 2031741 ENCODE Processing Pipeline 17f3d7401153b03af2d2692bde6bf73d https://www.encodeproject.org/files/ENCFF504KIJ/@@download/ENCFF504KIJ.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF739OMJ bed narrowPeak optimal idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR, ENCFF547MET, ENCFF720ZXB, ENCFF892SBI 1030359 ENCODE Processing Pipeline e9525ea80812e160b7f33e45dfeed555 https://www.encodeproject.org/files/ENCFF739OMJ/@@download/ENCFF739OMJ.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF612IQZ bed narrowPeak conservative idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF021GBR, ENCFF547MET, ENCFF720ZXB, ENCFF892SBI 994390 ENCODE Processing Pipeline de6877ce8114d7870c1fc44f643329f5 https://www.encodeproject.org/files/ENCFF612IQZ/@@download/ENCFF612IQZ.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF461IQT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF739OMJ 2086109 ENCODE Processing Pipeline 5442bbab2b38cc2a43e34e555267263a https://www.encodeproject.org/files/ENCFF461IQT/@@download/ENCFF461IQT.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF001NQZ bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE ENCFF001YJI 3024062 Michael Snyder, Stanford 9a0e8292d485a08e9b99928b1ffd0e2f https://www.encodeproject.org/files/ENCFF001NQZ/@@download/ENCFF001NQZ.bigBed mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NRG bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF001NRQ 501210840 Michael Snyder, Stanford 23d17c5a47e085aaf9c1f7c62860c523 https://www.encodeproject.org/files/ENCFF001NRG/@@download/ENCFF001NRG.bam mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NRH bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF001NRO 384521452 Michael Snyder, Stanford 639a6df2764f6fc852f73757b17977db https://www.encodeproject.org/files/ENCFF001NRH/@@download/ENCFF001NRH.bam mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NRI bigWig signal ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 306001220 Michael Snyder, Stanford cd3625141d4deddec58583df543f2008 https://www.encodeproject.org/files/ENCFF001NRI/@@download/ENCFF001NRI.bigWig mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF001NRO fastq reads ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 1 36 single-ended 916820643 Michael Snyder, Stanford 58cae160a4926e589dbd9c89a132a8ac https://www.encodeproject.org/files/ENCFF001NRO/@@download/ENCFF001NRO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NRQ fastq reads ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 1 36 single-ended 1162255225 Michael Snyder, Stanford 97248a1f5bcc75bc3c0e0d735cffc277 https://www.encodeproject.org/files/ENCFF001NRQ/@@download/ENCFF001NRQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001NCF/, /files/ENCFF001NCH/ released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001YJI bed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1227546 Michael Snyder, Stanford 15c11c5be6b17165d7d72000cec4c90f https://www.encodeproject.org/files/ENCFF001YJI/@@download/ENCFF001YJI.bed.gz mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF280MLO bam unfiltered alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NRO, ENCFF018NEO 988112950 ENCODE Processing Pipeline 5ea155371ccf83a08676f0eba30bdfda https://www.encodeproject.org/files/ENCFF280MLO/@@download/ENCFF280MLO.bam mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF356ALS bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NRO, ENCFF018NEO 523433771 ENCODE Processing Pipeline fc25feda3d87c364c0e19dda4036a045 https://www.encodeproject.org/files/ENCFF356ALS/@@download/ENCFF356ALS.bam mm10 released inconsistent target of control experiment, mild to moderate bottlenecking, low read length, inconsistent platforms, low read depth, moderate library complexity missing unfiltered alignments, biological replicates with identical biosample ENCFF576RKB bam unfiltered alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NRQ, ENCFF018NEO 1265946866 ENCODE Processing Pipeline 48c180ca54d99a1406dab0a0925d74df https://www.encodeproject.org/files/ENCFF576RKB/@@download/ENCFF576RKB.bam mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF079MWN bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NRQ, ENCFF018NEO 725071316 ENCODE Processing Pipeline ab1e4725ea22d1e34eb1bac2b14e2501 https://www.encodeproject.org/files/ENCFF079MWN/@@download/ENCFF079MWN.bam mm10 released inconsistent target of control experiment, mild to moderate bottlenecking, low read length, inconsistent platforms, low read depth, moderate library complexity missing unfiltered alignments, biological replicates with identical biosample ENCFF993KMG bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 320717110 ENCODE Processing Pipeline 8a1f996d094b1b7044b74282cbc69c04 https://www.encodeproject.org/files/ENCFF993KMG/@@download/ENCFF993KMG.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF218IPF bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 327320246 ENCODE Processing Pipeline cd9dc30435022d43726be336710d14f1 https://www.encodeproject.org/files/ENCFF218IPF/@@download/ENCFF218IPF.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF515BPN bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 457292783 ENCODE Processing Pipeline 51c742c00df3932515c6679a29673994 https://www.encodeproject.org/files/ENCFF515BPN/@@download/ENCFF515BPN.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF583EGX bed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 4715374 ENCODE Processing Pipeline ddd97ec989c73c253459d4b0b6ecc8b9 https://www.encodeproject.org/files/ENCFF583EGX/@@download/ENCFF583EGX.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF496YAK bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 231515183 ENCODE Processing Pipeline 8bbe0d0ee4d710a29e22ea56c3fbd979 https://www.encodeproject.org/files/ENCFF496YAK/@@download/ENCFF496YAK.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF591OWE bigWig signal p-value ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF171OVT, ENCFF356ALS 272210120 ENCODE Processing Pipeline cdb73f1e1bec071bfe353853af56d5be https://www.encodeproject.org/files/ENCFF591OWE/@@download/ENCFF591OWE.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF460LZI bigWig fold change over control ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 313895061 ENCODE Processing Pipeline 00895c902e12679966791f2aa2344375 https://www.encodeproject.org/files/ENCFF460LZI/@@download/ENCFF460LZI.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF958LHR bed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF079MWN, ENCFF171OVT 4852558 ENCODE Processing Pipeline fef2493ea2331cba9a6a648c0c476daf https://www.encodeproject.org/files/ENCFF958LHR/@@download/ENCFF958LHR.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF955PBH bed narrowPeak conservative idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO, ENCFF547MET, ENCFF583EGX, ENCFF958LHR 637819 ENCODE Processing Pipeline 4e97ec0ed6a9e526c009a1c08124b76f https://www.encodeproject.org/files/ENCFF955PBH/@@download/ENCFF955PBH.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF817XFN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF955PBH 1139426 ENCODE Processing Pipeline 61f0ad5a29d195c4e59cd4cb05484993 https://www.encodeproject.org/files/ENCFF817XFN/@@download/ENCFF817XFN.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF543BMO bed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF079MWN, ENCFF171OVT, ENCFF356ALS 4127012 ENCODE Processing Pipeline b22a4bfdfb91f45b33d9033cd4e9f0a5 https://www.encodeproject.org/files/ENCFF543BMO/@@download/ENCFF543BMO.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF223ASW bed narrowPeak optimal idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO, ENCFF547MET, ENCFF583EGX, ENCFF958LHR 775076 ENCODE Processing Pipeline 48f656a23d53b1ca1c828da1ffe3a066 https://www.encodeproject.org/files/ENCFF223ASW/@@download/ENCFF223ASW.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF304MER bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1 ENCFF958LHR 10734144 ENCODE Processing Pipeline 50a7b815f53a983bad79853d15c7fb1e https://www.encodeproject.org/files/ENCFF304MER/@@download/ENCFF304MER.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF215IWE bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF543BMO 8316299 ENCODE Processing Pipeline fced9b83d7b2b2de54535dbfa106ca5d https://www.encodeproject.org/files/ENCFF215IWE/@@download/ENCFF215IWE.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF343YJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 1, 2 ENCFF223ASW 1327898 ENCODE Processing Pipeline 4c358c1ffc65c5e36d5a63c66c873145 https://www.encodeproject.org/files/ENCFF343YJO/@@download/ENCFF343YJO.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF900VFH bigBed narrowPeak peaks ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus CTCF-mouse ENCAB000AFQ DNA see document see document False 2011-09-19 ENCODE 2 ENCFF583EGX 10513833 ENCODE Processing Pipeline d49b00be239e944b64438d86df1c0c59 https://www.encodeproject.org/files/ENCFF900VFH/@@download/ENCFF900VFH.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001MRE bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 703317298 Ross Hardison, PennState 7c3767a82699dc32136171179c48805a https://www.encodeproject.org/files/ENCFF001MRE/@@download/ENCFF001MRE.bam mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001MRF bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 579888089 Ross Hardison, PennState b8648516ae1667a01c8ab1d4886816fd https://www.encodeproject.org/files/ENCFF001MRF/@@download/ENCFF001MRF.bam mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001MRG bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE ENCFF001YFP 1027733 Ross Hardison, PennState 43e9beafcf19bbc8998afbf914f73588 https://www.encodeproject.org/files/ENCFF001MRG/@@download/ENCFF001MRG.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF001MRJ bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YFQ 696699 Ross Hardison, PennState 50c018b4c1394f44a3a16b12b0f5ebf3 https://www.encodeproject.org/files/ENCFF001MRJ/@@download/ENCFF001MRJ.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF001MRK bigBed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YFR 1024374 Ross Hardison, PennState 6330780e9323b10947190609c879bf5b https://www.encodeproject.org/files/ENCFF001MRK/@@download/ENCFF001MRK.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF001MRL bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 2182561507 Ross Hardison, PennState 5dfe95b0176ad68802482fb4973e2294 https://www.encodeproject.org/files/ENCFF001MRL/@@download/ENCFF001MRL.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001MRM bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 1971273654 Ross Hardison, PennState 54326e55de39c443436dc469f2db85fb https://www.encodeproject.org/files/ENCFF001MRM/@@download/ENCFF001MRM.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001MRN fastq reads ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 551834958 Ross Hardison, PennState 270a7ff3d4c265fbf436b644ebd66b3b https://www.encodeproject.org/files/ENCFF001MRN/@@download/ENCFF001MRN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSM/ released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF001MRO bigWig signal ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 3361135014 Ross Hardison, PennState d288601f84500ad7faf78c87828f92c8 https://www.encodeproject.org/files/ENCFF001MRO/@@download/ENCFF001MRO.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001MRQ fastq reads ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 453798372 Ross Hardison, PennState 4c8898b087a582a4a43399e43b4e1c3f https://www.encodeproject.org/files/ENCFF001MRQ/@@download/ENCFF001MRQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MSW/ released inconsistent control read length, mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF001YFP bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 528780 Ross Hardison, PennState eceb7b84d7a1435cdd675ca27969dd4e https://www.encodeproject.org/files/ENCFF001YFP/@@download/ENCFF001YFP.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001YFQ bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 438465 Ross Hardison, PennState c7037bca8f00efff65b4b64a4d5cd0e1 https://www.encodeproject.org/files/ENCFF001YFQ/@@download/ENCFF001YFQ.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001YFR bed broadPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 503668 Ross Hardison, PennState b7fce43e7cafd07c2003a7df9097bf12 https://www.encodeproject.org/files/ENCFF001YFR/@@download/ENCFF001YFR.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF920RHB bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MRQ, ENCFF018NEO 382537031 ENCODE Processing Pipeline 6fb949942f1610e0fabcdd606b43b7d9 https://www.encodeproject.org/files/ENCFF920RHB/@@download/ENCFF920RHB.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF903WXR bam unfiltered alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRN, ENCFF018NEO 741103513 ENCODE Processing Pipeline 8e703dc273268fe15adbc30303abb352 https://www.encodeproject.org/files/ENCFF903WXR/@@download/ENCFF903WXR.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF440GRL bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRN, ENCFF018NEO 531488649 ENCODE Processing Pipeline 85c27eb8bb732b45034cc2635b40c9e6 https://www.encodeproject.org/files/ENCFF440GRL/@@download/ENCFF440GRL.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF422FFH bam unfiltered alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MRQ, ENCFF018NEO 560260032 ENCODE Processing Pipeline b75766941fa3faae638d138eda3d084c https://www.encodeproject.org/files/ENCFF422FFH/@@download/ENCFF422FFH.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF505YBK bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 797875156 ENCODE Processing Pipeline f855ac0f8a444d35bb90b62537cf1eca https://www.encodeproject.org/files/ENCFF505YBK/@@download/ENCFF505YBK.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF452USO bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 800855498 ENCODE Processing Pipeline f4c070c1a3d0cf8fa43b9e0b9082a80a https://www.encodeproject.org/files/ENCFF452USO/@@download/ENCFF452USO.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF057EEV bigWig signal p-value ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 935330337 ENCODE Processing Pipeline fcce04023c4a853953e37e96562fe179 https://www.encodeproject.org/files/ENCFF057EEV/@@download/ENCFF057EEV.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF288VZZ bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 460756741 ENCODE Processing Pipeline 520d3a1403102210b999ed9ca1e77fe7 https://www.encodeproject.org/files/ENCFF288VZZ/@@download/ENCFF288VZZ.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF547IZY bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 507042614 ENCODE Processing Pipeline f5d99a0ec18cfc15fe1364437c634e43 https://www.encodeproject.org/files/ENCFF547IZY/@@download/ENCFF547IZY.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF816XFR bigWig fold change over control ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 799047029 ENCODE Processing Pipeline 4d2a43968e8d44f3bb77f4b9af7cdc12 https://www.encodeproject.org/files/ENCFF816XFR/@@download/ENCFF816XFR.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF456FUK bed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF383IWZ, ENCFF676LVI, ENCFF920RHB 4210378 ENCODE Processing Pipeline eced858a9974eaf3342122c853996553 https://www.encodeproject.org/files/ENCFF456FUK/@@download/ENCFF456FUK.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF163MHO bed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI, ENCFF920RHB 6021055 ENCODE Processing Pipeline c20f8935cd81a478eb9604735b6898c6 https://www.encodeproject.org/files/ENCFF163MHO/@@download/ENCFF163MHO.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF491MYA bigBed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF638XCM 10627635 ENCODE Processing Pipeline db4e57bdd7257869c890df89894fbae9 https://www.encodeproject.org/files/ENCFF491MYA/@@download/ENCFF491MYA.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF392XQY bigBed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF163MHO 11340398 ENCODE Processing Pipeline 7337573571ec421ab9d54d4750fad834 https://www.encodeproject.org/files/ENCFF392XQY/@@download/ENCFF392XQY.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF638XCM bed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF383IWZ, ENCFF440GRL, ENCFF676LVI 5229595 ENCODE Processing Pipeline 7dcfe2bb1e2d1172d38273bdbf07b11d https://www.encodeproject.org/files/ENCFF638XCM/@@download/ENCFF638XCM.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF929RJU bed narrowPeak optimal idr thresholded peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF163MHO, ENCFF456FUK, ENCFF547MET, ENCFF638XCM 461703 ENCODE Processing Pipeline d668027fd0716f46246446025db4c677 https://www.encodeproject.org/files/ENCFF929RJU/@@download/ENCFF929RJU.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF980API bigBed narrowPeak peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF456FUK 8923739 ENCODE Processing Pipeline d58074427735ba9048d4a355a27b04f1 https://www.encodeproject.org/files/ENCFF980API/@@download/ENCFF980API.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF003MBJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 immortalized cell line postnatal male 0 day Mus musculus 17β-estradiol CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF929RJU 837163 ENCODE Processing Pipeline a3a8e2770ed14c2b2d16be7fbe94882b https://www.encodeproject.org/files/ENCFF003MBJ/@@download/ENCFF003MBJ.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF001LSD bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LSJ 155611160 Bing Ren, UCSD 151dab0bf72d60b7a9204b3432dcf485 https://www.encodeproject.org/files/ENCFF001LSD/@@download/ENCFF001LSD.bam mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF001LSE bigBed broadPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE ENCFF001YBC 868107 Bing Ren, UCSD 63f2b0ab0504577bfaae337831d763fb https://www.encodeproject.org/files/ENCFF001LSE/@@download/ENCFF001LSE.bigBed mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF001LSF bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LSL 381352971 Bing Ren, UCSD 218b267406a96d8c64afb832985cfb44 https://www.encodeproject.org/files/ENCFF001LSF/@@download/ENCFF001LSF.bam mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF001LSG bigWig signal ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 49026047 Bing Ren, UCSD 67e38082fc30db952dcfc66c672ce6ed https://www.encodeproject.org/files/ENCFF001LSG/@@download/ENCFF001LSG.bigWig mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from poor library complexity, insufficient read depth extremely low read depth ENCFF001LSJ fastq reads ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 256034181 Bing Ren, UCSD 6db797262ef5c927e52b6891089c98d1 https://www.encodeproject.org/files/ENCFF001LSJ/@@download/ENCFF001LSJ.fastq.gz HiSeq 2000 /files/ENCFF001KYT/ released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF001LSL fastq reads ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 526849908 Bing Ren, UCSD 4bacf9cb69bbb97d7cb747def245f211 https://www.encodeproject.org/files/ENCFF001LSL/@@download/ENCFF001LSL.fastq.gz HiSeq 2000 /files/ENCFF001KYS/ released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF001YBC bed broadPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 608534 Bing Ren, UCSD f03daaae347d6a4f519fb3e9e4e63bfa https://www.encodeproject.org/files/ENCFF001YBC/@@download/ENCFF001YBC.bed.gz mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from poor library complexity, insufficient read depth extremely low read depth ENCFF686OYA bam unfiltered alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSL, ENCFF018NEO 557384856 ENCODE Processing Pipeline c4ddccf032c14aa02e8c72bef7c73f4f https://www.encodeproject.org/files/ENCFF686OYA/@@download/ENCFF686OYA.bam mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF782KAP bam unfiltered alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSJ, ENCFF018NEO 241116017 ENCODE Processing Pipeline a84f9b47e2b9c23c66816108a9113f11 https://www.encodeproject.org/files/ENCFF782KAP/@@download/ENCFF782KAP.bam mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF400HUF bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSJ, ENCFF018NEO 84582263 ENCODE Processing Pipeline 18413e52acf78c1e2555cf61a82f5702 https://www.encodeproject.org/files/ENCFF400HUF/@@download/ENCFF400HUF.bam mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, control low read depth extremely low read depth ENCFF757SUN bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSL, ENCFF018NEO 308947255 ENCODE Processing Pipeline 5f4d44da85b63066d46815cf08cfe33c https://www.encodeproject.org/files/ENCFF757SUN/@@download/ENCFF757SUN.bam mm10 released mild to moderate bottlenecking, moderate library complexity, borderline replicate concordance, control low read depth, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF184TYI bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 45584077 ENCODE Processing Pipeline d691855abc50935d1014219b09c22fc7 https://www.encodeproject.org/files/ENCFF184TYI/@@download/ENCFF184TYI.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF310MUQ bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 312675789 ENCODE Processing Pipeline d81f537d870212dc7ada59505ec40d5e https://www.encodeproject.org/files/ENCFF310MUQ/@@download/ENCFF310MUQ.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF897WQO bed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 5711799 ENCODE Processing Pipeline 9a9e92b484694500b117a595a232a01a https://www.encodeproject.org/files/ENCFF897WQO/@@download/ENCFF897WQO.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF640BHN bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 166296985 ENCODE Processing Pipeline 21e6feca54ec9bbe56154cde75ae16d9 https://www.encodeproject.org/files/ENCFF640BHN/@@download/ENCFF640BHN.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF243FBE bigWig signal p-value ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 236163028 ENCODE Processing Pipeline 19c47b2664916493a3a8dcb7ebec68d0 https://www.encodeproject.org/files/ENCFF243FBE/@@download/ENCFF243FBE.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF036INA bed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF283CTW, ENCFF400HUF 1626398 ENCODE Processing Pipeline 2028512c32941419556274ae692d32ce https://www.encodeproject.org/files/ENCFF036INA/@@download/ENCFF036INA.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF143XUK bigBed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF897WQO 12674520 ENCODE Processing Pipeline 816473f30ae818e0b357241e1f21bf1d https://www.encodeproject.org/files/ENCFF143XUK/@@download/ENCFF143XUK.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF639STL bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF283CTW, ENCFF347BCY, ENCFF400HUF, ENCFF757SUN 208684836 ENCODE Processing Pipeline b0d6793a59a8ea6f3ac8aff8af2e19f4 https://www.encodeproject.org/files/ENCFF639STL/@@download/ENCFF639STL.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF812MEX bigBed narrowPeak conservative idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF364YJV 483850 ENCODE Processing Pipeline 861a593e8f5cbe2a9c296dbe88e1f374 https://www.encodeproject.org/files/ENCFF812MEX/@@download/ENCFF812MEX.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF526EZI bigWig fold change over control ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 143279572 ENCODE Processing Pipeline 52ed316e83e133bd59883552f6bee7f0 https://www.encodeproject.org/files/ENCFF526EZI/@@download/ENCFF526EZI.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF551RNB bigBed narrowPeak optimal idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF714WDP 582600 ENCODE Processing Pipeline 58ed4bf8d8280fe122dac9f7b6bf6883 https://www.encodeproject.org/files/ENCFF551RNB/@@download/ENCFF551RNB.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF659CTO bed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF347BCY, ENCFF757SUN 4994438 ENCODE Processing Pipeline 3f753996c2644f87bb31325fefed53ef https://www.encodeproject.org/files/ENCFF659CTO/@@download/ENCFF659CTO.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF901FUH bigBed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF036INA 3651719 ENCODE Processing Pipeline d82f4bed6521d08f7e31b045ed427464 https://www.encodeproject.org/files/ENCFF901FUH/@@download/ENCFF901FUH.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF364YJV bed narrowPeak conservative idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF036INA, ENCFF547MET, ENCFF659CTO, ENCFF897WQO 250763 ENCODE Processing Pipeline b082e067cd1f8a1ae68e36aec12e6e2c https://www.encodeproject.org/files/ENCFF364YJV/@@download/ENCFF364YJV.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF714WDP bed narrowPeak optimal idr thresholded peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF036INA, ENCFF547MET, ENCFF659CTO, ENCFF897WQO 326073 ENCODE Processing Pipeline 61e2493535ae361665ef23aedbd29310 https://www.encodeproject.org/files/ENCFF714WDP/@@download/ENCFF714WDP.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF755OXB bigBed narrowPeak peaks ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF659CTO 12383215 ENCODE Processing Pipeline 1ae64cd8b9ff630bf1ef31aab8c4887a https://www.encodeproject.org/files/ENCFF755OXB/@@download/ENCFF755OXB.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth extremely low read depth ENCFF001LKM bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LKY 349941465 Bing Ren, UCSD c1927aa703895c6619ca26a730eaffca https://www.encodeproject.org/files/ENCFF001LKM/@@download/ENCFF001LKM.bam mm9 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LKN bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LLE 645891722 Bing Ren, UCSD 00a2ee9167921689ea9d56f9bf8b1bb6 https://www.encodeproject.org/files/ENCFF001LKN/@@download/ENCFF001LKN.bam mm9 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LKO bigBed broadPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001YAI 918749 Bing Ren, UCSD 964c3c8f0d1b3c888a6b9c4033ebac73 https://www.encodeproject.org/files/ENCFF001LKO/@@download/ENCFF001LKO.bigBed mm9 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LKR bigWig signal ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 46909819 Bing Ren, UCSD dbbe30ad122a818b301eebd7edc1f452 https://www.encodeproject.org/files/ENCFF001LKR/@@download/ENCFF001LKR.bigWig mm9 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth ENCFF001LKY fastq reads ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 33 single-ended 681016013 Bing Ren, UCSD 2780f6fda36487aa0346e577ded037c3 https://www.encodeproject.org/files/ENCFF001LKY/@@download/ENCFF001LKY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKE/ released inconsistent control read length, mixed read lengths, mild to moderate bottlenecking, low read length, low read depth, moderate library complexity missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LLE fastq reads ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 787401900 Bing Ren, UCSD 31830bc0a816bba4b559f047f8207dfc https://www.encodeproject.org/files/ENCFF001LLE/@@download/ENCFF001LLE.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KKF/ released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001YAI bed broadPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 589029 Bing Ren, UCSD e90ca04036424133c8ade4741a5e9b54 https://www.encodeproject.org/files/ENCFF001YAI/@@download/ENCFF001YAI.bed.gz mm9 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth ENCFF488MEI bam unfiltered alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLE, ENCFF018NEO 822804368 ENCODE Processing Pipeline b9dadc392ddbc5a70bdda7ecfe1a6b69 https://www.encodeproject.org/files/ENCFF488MEI/@@download/ENCFF488MEI.bam mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF897RYO bam unfiltered alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LKY, ENCFF018NEO 742297582 ENCODE Processing Pipeline b290b04c7471fa0af9dae88058dcf75d https://www.encodeproject.org/files/ENCFF897RYO/@@download/ENCFF897RYO.bam mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF265AMZ bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LKY, ENCFF018NEO 332320622 ENCODE Processing Pipeline 573fbb302715f284b0e2d4c90d6dbf0f https://www.encodeproject.org/files/ENCFF265AMZ/@@download/ENCFF265AMZ.bam mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth, control low read depth ENCFF147QPL bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLE, ENCFF018NEO 463563626 ENCODE Processing Pipeline 046232a0d2bb8b0ec357f41292d6ed1b https://www.encodeproject.org/files/ENCFF147QPL/@@download/ENCFF147QPL.bam mm10 released mixed read lengths, mild to moderate bottlenecking, control low read depth, low read length, low read depth, moderate library complexity missing unfiltered alignments insufficient read length, insufficient read depth ENCFF237XJD bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 305387202 ENCODE Processing Pipeline f14a3cff2b0f579a1337b328a1f6c458 https://www.encodeproject.org/files/ENCFF237XJD/@@download/ENCFF237XJD.bigWig mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF571CYW bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 309059831 ENCODE Processing Pipeline 0ee7e8101253f3d4cf7946535d03c100 https://www.encodeproject.org/files/ENCFF571CYW/@@download/ENCFF571CYW.bigWig mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF594EHQ bigWig signal p-value ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 357709128 ENCODE Processing Pipeline 4a0fe10a4a2daa9631df2cbfa37f2e1d https://www.encodeproject.org/files/ENCFF594EHQ/@@download/ENCFF594EHQ.bigWig mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF821ICZ bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 158633568 ENCODE Processing Pipeline 8267f2556b744cda1e176762ebc17cf2 https://www.encodeproject.org/files/ENCFF821ICZ/@@download/ENCFF821ICZ.bigWig mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF420ODU bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 199127750 ENCODE Processing Pipeline ffce56162a7df89beb3b717fe72e2895 https://www.encodeproject.org/files/ENCFF420ODU/@@download/ENCFF420ODU.bigWig mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF147CTE bigBed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF258WBW 10962749 ENCODE Processing Pipeline 691a5662409e1f8360f5505128c7a580 https://www.encodeproject.org/files/ENCFF147CTE/@@download/ENCFF147CTE.bigBed mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF601AJL bed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 2412924 ENCODE Processing Pipeline fc9ffa51e188fb3b29a5c04ebe810bc8 https://www.encodeproject.org/files/ENCFF601AJL/@@download/ENCFF601AJL.bed.gz mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF164ZFD bigWig fold change over control ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 299092611 ENCODE Processing Pipeline d478cedd0ff94a0b1de2e5626bc3368b https://www.encodeproject.org/files/ENCFF164ZFD/@@download/ENCFF164ZFD.bigWig mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF523FYC bed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF147QPL, ENCFF396FNQ, ENCFF862XUW 3684197 ENCODE Processing Pipeline 0e2bd34bc23be09a7e83cfe9036dac48 https://www.encodeproject.org/files/ENCFF523FYC/@@download/ENCFF523FYC.bed.gz mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF311HPG bed narrowPeak optimal idr thresholded peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF258WBW, ENCFF523FYC, ENCFF547MET, ENCFF601AJL 606640 ENCODE Processing Pipeline e69e7c9495ae7b1486a52239b52c3afb https://www.encodeproject.org/files/ENCFF311HPG/@@download/ENCFF311HPG.bed.gz mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF946DCA bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF311HPG 1124752 ENCODE Processing Pipeline b4175532568a28000c4a555e4b03e3dc https://www.encodeproject.org/files/ENCFF946DCA/@@download/ENCFF946DCA.bigBed mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF258WBW bed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF147QPL, ENCFF265AMZ, ENCFF396FNQ, ENCFF862XUW 4998506 ENCODE Processing Pipeline 3c86a12c855637771baf4d56d3515b22 https://www.encodeproject.org/files/ENCFF258WBW/@@download/ENCFF258WBW.bed.gz mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF081LJA bigBed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF601AJL 5771973 ENCODE Processing Pipeline cb0cef1ccfe42403896b72210ffaeb91 https://www.encodeproject.org/files/ENCFF081LJA/@@download/ENCFF081LJA.bigBed mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF106JNO bigBed narrowPeak peaks ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF523FYC 8397724 ENCODE Processing Pipeline fac62a83c59b48d1dc93eaeaa7fcfcfe https://www.encodeproject.org/files/ENCFF106JNO/@@download/ENCFF106JNO.bigBed mm10 released mixed read lengths, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001ZQP fastq reads ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 1 45 single-ended 2020172004 Ross Hardison, PennState e2c38e995d900af5e47f7a34e1697a53 https://www.encodeproject.org/files/ENCFF001ZQP/@@download/ENCFF001ZQP.fastq.gz HiSeq 2000 /files/ENCFF001ZGK/ released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF001ZQQ bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 1 5131202717 Ross Hardison, PennState 65b5bd8deef44fc4123cb82e4e80726d https://www.encodeproject.org/files/ENCFF001ZQQ/@@download/ENCFF001ZQQ.bigWig mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments, missing derived_from ENCFF001ZQR fastq reads ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 1 45 single-ended 1881057794 Ross Hardison, PennState f671bc9e7c2d8675575d5fd5c34ef411 https://www.encodeproject.org/files/ENCFF001ZQR/@@download/ENCFF001ZQR.fastq.gz HiSeq 2000 /files/ENCFF001ZGM/ released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF001ZQS bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 1 4999620112 Ross Hardison, PennState 1552038522a8099daa7da4a1ff8c6061 https://www.encodeproject.org/files/ENCFF001ZQS/@@download/ENCFF001ZQS.bigWig mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments, missing derived_from ENCFF001ZQT bigWig signal ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 5888784483 Ross Hardison, PennState a82db6b0cde3c6211553ad882f82e514 https://www.encodeproject.org/files/ENCFF001ZQT/@@download/ENCFF001ZQT.bigWig mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments, missing derived_from ENCFF001ZQU bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 ENCFF001ZQP 2522573944 Ross Hardison, PennState 5aca639ae3857b1f2b2f994961e4f843 https://www.encodeproject.org/files/ENCFF001ZQU/@@download/ENCFF001ZQU.bam mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF001ZQV bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 ENCFF001ZQR 2338799625 Ross Hardison, PennState aa0db315d16d64a4a62e83c2d7f59068 https://www.encodeproject.org/files/ENCFF001ZQV/@@download/ENCFF001ZQV.bam mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF001ZQW bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 1 1065186 Ross Hardison, PennState 5550327f5287c362f8ff734a757b4d48 https://www.encodeproject.org/files/ENCFF001ZQW/@@download/ENCFF001ZQW.bigBed mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments, missing derived_from ENCFF001ZQX bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 1 1053597 Ross Hardison, PennState d548ba882c6563468a80757cf2ebe2ea https://www.encodeproject.org/files/ENCFF001ZQX/@@download/ENCFF001ZQX.bigBed mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments, missing derived_from ENCFF001ZQY bigBed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1093940 Ross Hardison, PennState d3956e42bcc32d1a081776c2f21f6236 https://www.encodeproject.org/files/ENCFF001ZQY/@@download/ENCFF001ZQY.bigBed mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments, missing derived_from ENCFF001ZQZ bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 4810630627 Ross Hardison, PennState 12f3a8b853b4877820a647d23d07aee2 https://www.encodeproject.org/files/ENCFF001ZQZ/@@download/ENCFF001ZQZ.bam mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments, missing derived_from ENCFF854IVF bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE ENCFF001ZQY 607503 ENCODE Consortium 18e8677418137c2a7e85687803f77cdf https://www.encodeproject.org/files/ENCFF854IVF/@@download/ENCFF854IVF.bed.gz mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF524XKU bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 1 ENCFF001ZQW 568432 ENCODE Consortium 4dff05cead4a5d08c20d3fdc2c0a96c7 https://www.encodeproject.org/files/ENCFF524XKU/@@download/ENCFF524XKU.bed.gz mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF672RHI bed broadPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 1 ENCFF001ZQX 565404 ENCODE Consortium 60f0c82d77f15aae718dd680a17ecafc https://www.encodeproject.org/files/ENCFF672RHI/@@download/ENCFF672RHI.bed.gz mm9 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF572VLY bam unfiltered alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 45 ENCFF001ZQP, ENCFF018NEO 2683659809 ENCODE Processing Pipeline 0ed064473d59418ae31dbe9093fa5f81 https://www.encodeproject.org/files/ENCFF572VLY/@@download/ENCFF572VLY.bam mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF428HVQ bam unfiltered alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 45 ENCFF001ZQR, ENCFF018NEO 2488582341 ENCODE Processing Pipeline 776cb2a1fbb8c694aa21d7ac518f4844 https://www.encodeproject.org/files/ENCFF428HVQ/@@download/ENCFF428HVQ.bam mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF436KYT bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 45 ENCFF001ZQP, ENCFF018NEO 1890769372 ENCODE Processing Pipeline 84bea82626b5ab83813c8acd85c8d55c https://www.encodeproject.org/files/ENCFF436KYT/@@download/ENCFF436KYT.bam mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF890GFD bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 45 ENCFF001ZQR, ENCFF018NEO 1689616186 ENCODE Processing Pipeline f4dc9c3f7ccb262d9f4600499a9ace36 https://www.encodeproject.org/files/ENCFF890GFD/@@download/ENCFF890GFD.bam mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF962GJM bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 663878919 ENCODE Processing Pipeline 3fd2b7f8f12188bc9ed5333ed4dd1e94 https://www.encodeproject.org/files/ENCFF962GJM/@@download/ENCFF962GJM.bigWig mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF452UXX bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 611528100 ENCODE Processing Pipeline b1c8db76b318532e80019a34f3d365fe https://www.encodeproject.org/files/ENCFF452UXX/@@download/ENCFF452UXX.bigWig mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF989YLQ bigWig signal p-value ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 1011640177 ENCODE Processing Pipeline 6e24b8861917a6fe44e05e66f18dbdfb https://www.encodeproject.org/files/ENCFF989YLQ/@@download/ENCFF989YLQ.bigWig mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF454YWR bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 1245704177 ENCODE Processing Pipeline c69f514dd9f405b7d5ed62b92bab1080 https://www.encodeproject.org/files/ENCFF454YWR/@@download/ENCFF454YWR.bigWig mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF785USF bigBed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 ENCFF456EVZ 11303854 ENCODE Processing Pipeline 55ea75759b6d8573dd71346b7e923bea https://www.encodeproject.org/files/ENCFF785USF/@@download/ENCFF785USF.bigBed mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF456EVZ bed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 5593614 ENCODE Processing Pipeline ff46e62ecf24428c612a4fef16a2e7c3 https://www.encodeproject.org/files/ENCFF456EVZ/@@download/ENCFF456EVZ.bed.gz mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF243PIS bed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF111OFQ, ENCFF436KYT, ENCFF666VRA, ENCFF890GFD 6630698 ENCODE Processing Pipeline e30108ebc095dfbc641cb5bff315fc9a https://www.encodeproject.org/files/ENCFF243PIS/@@download/ENCFF243PIS.bed.gz mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF345LJJ bigBed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 ENCFF100ZNH 11295695 ENCODE Processing Pipeline 2dcfb7f470d225b5a6e11cf7a3ecdd49 https://www.encodeproject.org/files/ENCFF345LJJ/@@download/ENCFF345LJJ.bigBed mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF832AQF bigBed narrowPeak optimal idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF347BWU 1222401 ENCODE Processing Pipeline a156e14cf9b5436d3fe94a6ce918a5bd https://www.encodeproject.org/files/ENCFF832AQF/@@download/ENCFF832AQF.bigBed mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF327CNH bigBed narrowPeak conservative idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF969YUQ 1205121 ENCODE Processing Pipeline f3d6b6fc535b0b5fca054b7418c638c0 https://www.encodeproject.org/files/ENCFF327CNH/@@download/ENCFF327CNH.bigBed mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF980QVK bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1 ENCFF436KYT, ENCFF666VRA 727518986 ENCODE Processing Pipeline 3f6f1e6a7cb2d2f29b84af4cc0df32ec https://www.encodeproject.org/files/ENCFF980QVK/@@download/ENCFF980QVK.bigWig mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF041KBA bigWig fold change over control ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 663005041 ENCODE Processing Pipeline 7cf03795fe8c4f8762c7589762908319 https://www.encodeproject.org/files/ENCFF041KBA/@@download/ENCFF041KBA.bigWig mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF100ZNH bed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 2 ENCFF111OFQ, ENCFF890GFD 5330422 ENCODE Processing Pipeline fe1a16b6ee0908aa2013d0aa26f093ca https://www.encodeproject.org/files/ENCFF100ZNH/@@download/ENCFF100ZNH.bed.gz mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF803QSB bigBed narrowPeak peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF243PIS 11546562 ENCODE Processing Pipeline 895d431357050407c1dde9ca7df3af91 https://www.encodeproject.org/files/ENCFF803QSB/@@download/ENCFF803QSB.bigBed mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF969YUQ bed narrowPeak conservative idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF100ZNH, ENCFF243PIS, ENCFF456EVZ, ENCFF547MET 699733 ENCODE Processing Pipeline d0ac3193998502a5286322c99999ae85 https://www.encodeproject.org/files/ENCFF969YUQ/@@download/ENCFF969YUQ.bed.gz mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF347BWU bed narrowPeak optimal idr thresholded peaks ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell embryonic male 3.5 day Mus musculus CTCF-mouse ENCAB000BKZ DNA see document see document False 2014-02-24 ENCODE 1, 2 ENCFF100ZNH, ENCFF243PIS, ENCFF456EVZ, ENCFF547MET 713139 ENCODE Processing Pipeline be25fe80a8c1e6d77057eeffc0d7ec5f https://www.encodeproject.org/files/ENCFF347BWU/@@download/ENCFF347BWU.bed.gz mm10 released low read length experiment not submitted to GEO, missing unfiltered alignments ENCFF390DAS fastq reads ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1195087204 Richard Myers, HAIB c90f9489a9f90ea5b9199ca6bc628d81 SRA:SRR5111187 https://www.encodeproject.org/files/ENCFF390DAS/@@download/ENCFF390DAS.fastq.gz HiSeq 2000 /files/ENCFF853NEA/ released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF837KZY fastq reads ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 975495120 Richard Myers, HAIB dbf65d0e00339744349c0c3a2412933e SRA:SRR5111188 https://www.encodeproject.org/files/ENCFF837KZY/@@download/ENCFF837KZY.fastq.gz HiSeq 2000 /files/ENCFF853NEA/ released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF867KTT bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF390DAS, ENCFF806TVZ 809439774 ENCODE Processing Pipeline 091c27200104fa3742f8ff808d0643b5 https://www.encodeproject.org/files/ENCFF867KTT/@@download/ENCFF867KTT.bam mm10-minimal archived antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF698YTR bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF806TVZ, ENCFF837KZY 638032982 ENCODE Processing Pipeline e4f8be54e8605755cbc08b71eb28393c https://www.encodeproject.org/files/ENCFF698YTR/@@download/ENCFF698YTR.bam mm10-minimal archived antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF270JZZ bam unfiltered alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF837KZY 981304919 ENCODE Processing Pipeline 76359bee6ef276adb8c434b7e06c09e3 https://www.encodeproject.org/files/ENCFF270JZZ/@@download/ENCFF270JZZ.bam mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF146SNM bam unfiltered alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF390DAS 1149685089 ENCODE Processing Pipeline 0c3e6e87eb475d7b6702260d367b9c1c https://www.encodeproject.org/files/ENCFF146SNM/@@download/ENCFF146SNM.bam mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF538PLQ bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF390DAS 809379754 ENCODE Processing Pipeline 58facf9f934b37fd7e94374e3e20ef2c https://www.encodeproject.org/files/ENCFF538PLQ/@@download/ENCFF538PLQ.bam mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF669IDD bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF837KZY 637979380 ENCODE Processing Pipeline c20d065504a33aa9a664a9004e1e3f57 https://www.encodeproject.org/files/ENCFF669IDD/@@download/ENCFF669IDD.bam mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF758LAP bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 367126109 ENCODE Processing Pipeline c340a6a64a4ffbdedc1c851898728188 https://www.encodeproject.org/files/ENCFF758LAP/@@download/ENCFF758LAP.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF568EDT bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 315275114 ENCODE Processing Pipeline 7340123bfc2e38c968354d8c754cc6eb https://www.encodeproject.org/files/ENCFF568EDT/@@download/ENCFF568EDT.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF193CUU bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 321659305 ENCODE Processing Pipeline 2c64aab28bbc7bd4c3c2ca108957b39e https://www.encodeproject.org/files/ENCFF193CUU/@@download/ENCFF193CUU.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF349HWD bigWig signal p-value ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 409676940 ENCODE Processing Pipeline 72348494b3909f946a61538213743729 https://www.encodeproject.org/files/ENCFF349HWD/@@download/ENCFF349HWD.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF408VND bed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF174UCS, ENCFF538PLQ 4966337 ENCODE Processing Pipeline c054e8229f056eba4a6f9695d15f9751 https://www.encodeproject.org/files/ENCFF408VND/@@download/ENCFF408VND.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF739KHJ bigBed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF408VND 10964162 ENCODE Processing Pipeline d85c12a8cd7aebd95f3d28f0a0f561ed https://www.encodeproject.org/files/ENCFF739KHJ/@@download/ENCFF739KHJ.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF526QWN bigBed narrowPeak conservative idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF187ZKI 1510977 ENCODE Processing Pipeline 546712d1f9859974ec75863730053727 https://www.encodeproject.org/files/ENCFF526QWN/@@download/ENCFF526QWN.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF114ZDH bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 279913528 ENCODE Processing Pipeline 011a513c592606fc6d323fe1f69d84f7 https://www.encodeproject.org/files/ENCFF114ZDH/@@download/ENCFF114ZDH.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF875IOM bigBed narrowPeak optimal idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF784YSO 2084531 ENCODE Processing Pipeline d9b3993648f6c48c2d4a878303a79368 https://www.encodeproject.org/files/ENCFF875IOM/@@download/ENCFF875IOM.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF784YSO bed narrowPeak optimal idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF381LLL, ENCFF408VND, ENCFF547MET, ENCFF694LLR 1043514 ENCODE Processing Pipeline db9ea3d68f32df3614efaf7db13de409 https://www.encodeproject.org/files/ENCFF784YSO/@@download/ENCFF784YSO.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF083ZQN bigWig fold change over control ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 501094311 ENCODE Processing Pipeline dc2d0a086f57df62ba22287d64c46b80 https://www.encodeproject.org/files/ENCFF083ZQN/@@download/ENCFF083ZQN.bigWig mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF381LLL bed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF174UCS, ENCFF669IDD 5237998 ENCODE Processing Pipeline b72e863e5e9325a8e4356c3cca172882 https://www.encodeproject.org/files/ENCFF381LLL/@@download/ENCFF381LLL.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF694LLR bed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF174UCS, ENCFF538PLQ, ENCFF669IDD 5642697 ENCODE Processing Pipeline 8615a9030fa4e2a46866e917f66c679d https://www.encodeproject.org/files/ENCFF694LLR/@@download/ENCFF694LLR.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF834LET bigBed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF381LLL 13269597 ENCODE Processing Pipeline 7eb9936a0b01ccda19314389efab0ef7 https://www.encodeproject.org/files/ENCFF834LET/@@download/ENCFF834LET.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF354XFA bigBed narrowPeak peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF694LLR 11233714 ENCODE Processing Pipeline 6fdd2ee684037ade0cd76d198ab81da6 https://www.encodeproject.org/files/ENCFF354XFA/@@download/ENCFF354XFA.bigBed mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF187ZKI bed narrowPeak conservative idr thresholded peaks ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF381LLL, ENCFF408VND, ENCFF547MET, ENCFF694LLR 953605 ENCODE Processing Pipeline cc1d6bb82873299c9e48a9a1ef5a99a1 https://www.encodeproject.org/files/ENCFF187ZKI/@@download/ENCFF187ZKI.bed.gz mm10 released antibody characterized with exemption, moderate library complexity, low read depth, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF096EGJ fastq reads ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1025246041 Richard Myers, HAIB 66467ed21327954b452a92a13adf11d3 SRA:SRR5111533 https://www.encodeproject.org/files/ENCFF096EGJ/@@download/ENCFF096EGJ.fastq.gz HiSeq 2000 /files/ENCFF331QQL/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF803MRJ fastq reads ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1083660814 Richard Myers, HAIB 83120264679b69e2e67591356b17ed60 SRA:SRR5111532 https://www.encodeproject.org/files/ENCFF803MRJ/@@download/ENCFF803MRJ.fastq.gz HiSeq 2000 /files/ENCFF331QQL/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF605FQF bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF803MRJ, ENCFF806TVZ 815286530 ENCODE Processing Pipeline 6f121118ad2d7b13f4d8bfb9f3af7b20 https://www.encodeproject.org/files/ENCFF605FQF/@@download/ENCFF605FQF.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF579VFN bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF096EGJ, ENCFF806TVZ 733430746 ENCODE Processing Pipeline a6365a2474a69d215d762b55ab184c4f https://www.encodeproject.org/files/ENCFF579VFN/@@download/ENCFF579VFN.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF135YTD bam unfiltered alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF803MRJ 1142167584 ENCODE Processing Pipeline 2c845af5ebc39817a1e2091b2c1434b6 https://www.encodeproject.org/files/ENCFF135YTD/@@download/ENCFF135YTD.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF298WML bam unfiltered alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF096EGJ 1056189022 ENCODE Processing Pipeline 7b46e6bbfece35c25ed5276556a7e4cf https://www.encodeproject.org/files/ENCFF298WML/@@download/ENCFF298WML.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF676SED bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF803MRJ 815126823 ENCODE Processing Pipeline 709c251b972bc0a6fd186ecd78d7ec81 https://www.encodeproject.org/files/ENCFF676SED/@@download/ENCFF676SED.bam mm10 released antibody characterized with exemption, low read depth, control low read depth NTR biosample, biological replicates with identical biosample ENCFF844ZSH bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF096EGJ 733279921 ENCODE Processing Pipeline 92902cb0ae4464000bebf544ca3cf3db https://www.encodeproject.org/files/ENCFF844ZSH/@@download/ENCFF844ZSH.bam mm10 released antibody characterized with exemption, low read depth, control low read depth NTR biosample, biological replicates with identical biosample ENCFF488MHC bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 270803645 ENCODE Processing Pipeline 3d486be419756a79dab1fb053c17577a https://www.encodeproject.org/files/ENCFF488MHC/@@download/ENCFF488MHC.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF455ESQ bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 271209406 ENCODE Processing Pipeline a8a0ccaf0e0d1a7c1bb7f5ad497afe38 https://www.encodeproject.org/files/ENCFF455ESQ/@@download/ENCFF455ESQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF587JOJ bed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 4484074 ENCODE Processing Pipeline 4c87cc3b529a7e93415bd7a36983a029 https://www.encodeproject.org/files/ENCFF587JOJ/@@download/ENCFF587JOJ.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF156AIW bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 343990991 ENCODE Processing Pipeline 4d42283f26f02804907ae16b46ca1fdf https://www.encodeproject.org/files/ENCFF156AIW/@@download/ENCFF156AIW.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF691ULU bigWig fold change over control ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 460340272 ENCODE Processing Pipeline 1aefe2ca56dd25282c824a5a4ff3edc3 https://www.encodeproject.org/files/ENCFF691ULU/@@download/ENCFF691ULU.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF689ZFH bed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF844ZSH, ENCFF847EJM 5294966 ENCODE Processing Pipeline 45a735303e49bf66eaf81f68d5347030 https://www.encodeproject.org/files/ENCFF689ZFH/@@download/ENCFF689ZFH.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF191NHQ bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF676SED, ENCFF847EJM 294481670 ENCODE Processing Pipeline 3601bd279740eb08ac74e10765fb60b3 https://www.encodeproject.org/files/ENCFF191NHQ/@@download/ENCFF191NHQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF900YUX bigWig signal p-value ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 361534050 ENCODE Processing Pipeline a9519b6c17bf4109af743e1346971d23 https://www.encodeproject.org/files/ENCFF900YUX/@@download/ENCFF900YUX.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF449LBJ bed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF676SED, ENCFF844ZSH, ENCFF847EJM 5614496 ENCODE Processing Pipeline 9c4119b9879223f55ef7d11c9de1f27e https://www.encodeproject.org/files/ENCFF449LBJ/@@download/ENCFF449LBJ.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF190CMG bigBed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF689ZFH 13124109 ENCODE Processing Pipeline 31b8f70695459e874b10c6643982a197 https://www.encodeproject.org/files/ENCFF190CMG/@@download/ENCFF190CMG.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF317UVR bigBed narrowPeak conservative idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF632FCA 1644282 ENCODE Processing Pipeline 33b34151de35b67a30565af836345772 https://www.encodeproject.org/files/ENCFF317UVR/@@download/ENCFF317UVR.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF632FCA bed narrowPeak conservative idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ, ENCFF547MET, ENCFF587JOJ, ENCFF689ZFH 808845 ENCODE Processing Pipeline b46835ac64e65dd2854b57b3dba7912a https://www.encodeproject.org/files/ENCFF632FCA/@@download/ENCFF632FCA.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF332QLW bed narrowPeak optimal idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ, ENCFF547MET, ENCFF587JOJ, ENCFF689ZFH 828425 ENCODE Processing Pipeline c50d9c738cf0414af6fbf5275be99b53 https://www.encodeproject.org/files/ENCFF332QLW/@@download/ENCFF332QLW.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF735TCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF332QLW 1680751 ENCODE Processing Pipeline b2a31ce4523bd55334348458780fae86 https://www.encodeproject.org/files/ENCFF735TCQ/@@download/ENCFF735TCQ.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF368MGB bigBed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF587JOJ 10592630 ENCODE Processing Pipeline 7da790889d3a4b986073c6826b8cfde5 https://www.encodeproject.org/files/ENCFF368MGB/@@download/ENCFF368MGB.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF440ATU bigBed narrowPeak peaks ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF449LBJ 11141155 ENCODE Processing Pipeline bcf19cc892deda942ebd17444a5f842b https://www.encodeproject.org/files/ENCFF440ATU/@@download/ENCFF440ATU.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF001LHV bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIJ 219390311 Bing Ren, UCSD 5007b12f831953f4a5ebcf451f33b9cf https://www.encodeproject.org/files/ENCFF001LHV/@@download/ENCFF001LHV.bam mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LHX bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LIK 472072372 Bing Ren, UCSD b022a603a06ad6cfa375891e22fad992 https://www.encodeproject.org/files/ENCFF001LHX/@@download/ENCFF001LHX.bam mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LHY bigBed broadPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001YAA 840259 Bing Ren, UCSD 8b19cfd4e6e49e1733d99c53721e1930 https://www.encodeproject.org/files/ENCFF001LHY/@@download/ENCFF001LHY.bigBed mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LIA bigWig signal ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 61251149 Bing Ren, UCSD 7c9895c4b57cebc1da5f897017f95770 https://www.encodeproject.org/files/ENCFF001LIA/@@download/ENCFF001LIA.bigWig mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF001LIJ fastq reads ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 841162261 Bing Ren, UCSD 20bf752c7fc880fa848a1eeee86352ef https://www.encodeproject.org/files/ENCFF001LIJ/@@download/ENCFF001LIJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KCX/ released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LIK fastq reads ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 812102450 Bing Ren, UCSD 8d761617311470deca8077439eb3fe15 https://www.encodeproject.org/files/ENCFF001LIK/@@download/ENCFF001LIK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KDF/ released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001YAA bed broadPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 518473 Bing Ren, UCSD 386e7970b88d3149685d612946a420f8 https://www.encodeproject.org/files/ENCFF001YAA/@@download/ENCFF001YAA.bed.gz mm9 released mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF214WCM bam unfiltered alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIJ, ENCFF018NEO 842772713 ENCODE Processing Pipeline ad09061204469466ba45e066d0867b43 https://www.encodeproject.org/files/ENCFF214WCM/@@download/ENCFF214WCM.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF580NNY bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIJ, ENCFF018NEO 238802631 ENCODE Processing Pipeline 3934281b6c25559c374873f08c087174 https://www.encodeproject.org/files/ENCFF580NNY/@@download/ENCFF580NNY.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, control low read depth ENCFF557KUY bam unfiltered alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIK, ENCFF018NEO 834205647 ENCODE Processing Pipeline 9ee701ac86c72c8d1c1d5befba8a1ec7 https://www.encodeproject.org/files/ENCFF557KUY/@@download/ENCFF557KUY.bam mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF119HGR bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIK, ENCFF018NEO 299602650 ENCODE Processing Pipeline 60b05f6f90e9cc40e7b3119af7e14f4e https://www.encodeproject.org/files/ENCFF119HGR/@@download/ENCFF119HGR.bam mm10 released mild to moderate bottlenecking, control low read depth, low read length missing unfiltered alignments insufficient read depth ENCFF256ZSB bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 295806777 ENCODE Processing Pipeline a4bc61c71123e7dc40b93a04cabb28de https://www.encodeproject.org/files/ENCFF256ZSB/@@download/ENCFF256ZSB.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF234JEC bed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 1699120 ENCODE Processing Pipeline a45abfb7d69d92562ef6e52176b2b03e https://www.encodeproject.org/files/ENCFF234JEC/@@download/ENCFF234JEC.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF228WNF bigBed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF513QUA 4560277 ENCODE Processing Pipeline d2d751346697afe6a8bee205f8e372ca https://www.encodeproject.org/files/ENCFF228WNF/@@download/ENCFF228WNF.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF779CYW bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF034VZI 1002649 ENCODE Processing Pipeline 0407742043e2b4f9d22e0701be43a1fe https://www.encodeproject.org/files/ENCFF779CYW/@@download/ENCFF779CYW.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF508ODE bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 274680192 ENCODE Processing Pipeline 2bfe729bda0c28e797659349833f36e8 https://www.encodeproject.org/files/ENCFF508ODE/@@download/ENCFF508ODE.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF853VHM bigWig signal p-value ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 260563791 ENCODE Processing Pipeline f2760954d449838d85f31363a3b5b5c0 https://www.encodeproject.org/files/ENCFF853VHM/@@download/ENCFF853VHM.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF416FSS bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF555HBY, ENCFF580NNY, ENCFF745XER 106719262 ENCODE Processing Pipeline 5e0404d339d7f13f033b6a1e8ab0b7a8 https://www.encodeproject.org/files/ENCFF416FSS/@@download/ENCFF416FSS.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF532YGA bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 140672455 ENCODE Processing Pipeline f0ff92867a19e185aaad2df826dfc589 https://www.encodeproject.org/files/ENCFF532YGA/@@download/ENCFF532YGA.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF513QUA bed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF119HGR, ENCFF555HBY, ENCFF745XER 2171433 ENCODE Processing Pipeline d43d911c4c068ab691618ca55a567c30 https://www.encodeproject.org/files/ENCFF513QUA/@@download/ENCFF513QUA.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF068IFU bed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 3872040 ENCODE Processing Pipeline 9a048d9e7aa729d1a316d676eeabbe6d https://www.encodeproject.org/files/ENCFF068IFU/@@download/ENCFF068IFU.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF521IJB bigBed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU 9320363 ENCODE Processing Pipeline 6ae0ac219736ac39ae8b8014ac12744e https://www.encodeproject.org/files/ENCFF521IJB/@@download/ENCFF521IJB.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF154GFF bigBed narrowPeak peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF234JEC 3446753 ENCODE Processing Pipeline 00cc76f0f8b2fa2f30d9c1795a5b9cbc https://www.encodeproject.org/files/ENCFF154GFF/@@download/ENCFF154GFF.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF057UOO bigWig fold change over control ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF119HGR, ENCFF555HBY, ENCFF580NNY, ENCFF745XER 218543589 ENCODE Processing Pipeline f4415d6b589a38626a45ed08c803d2ad https://www.encodeproject.org/files/ENCFF057UOO/@@download/ENCFF057UOO.bigWig mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF034VZI bed narrowPeak optimal idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU, ENCFF234JEC, ENCFF513QUA, ENCFF547MET 517919 ENCODE Processing Pipeline 4dcd43bc5a2693cb77a89aacd5d174b0 https://www.encodeproject.org/files/ENCFF034VZI/@@download/ENCFF034VZI.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF009PHO bed narrowPeak conservative idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF068IFU, ENCFF234JEC, ENCFF513QUA, ENCFF547MET 476982 ENCODE Processing Pipeline a7e6d3a72b37ca5cd79ccbf263e48f42 https://www.encodeproject.org/files/ENCFF009PHO/@@download/ENCFF009PHO.bed.gz mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF355UNA bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF009PHO 940835 ENCODE Processing Pipeline e59a85ed438b0e1dcaf14d49576d05b0 https://www.encodeproject.org/files/ENCFF355UNA/@@download/ENCFF355UNA.bigBed mm10 released mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LMM bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LMX 571365700 Bing Ren, UCSD 3201f50c481ef41d5cd2a95b775dfc9b https://www.encodeproject.org/files/ENCFF001LMM/@@download/ENCFF001LMM.bam mm9 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LMN bigBed broadPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001YAM 705546 Bing Ren, UCSD 5fa8663c9f8f690c142bbeea88906aa7 https://www.encodeproject.org/files/ENCFF001LMN/@@download/ENCFF001LMN.bigBed mm9 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LMO bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LMV 755964667 Bing Ren, UCSD bca9d37eeb16806ba14be507d7b0cb60 https://www.encodeproject.org/files/ENCFF001LMO/@@download/ENCFF001LMO.bam mm9 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LMQ bigWig signal ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 77491367 Bing Ren, UCSD 2ba36ec3997ea404d2ef4713ad9ab58f https://www.encodeproject.org/files/ENCFF001LMQ/@@download/ENCFF001LMQ.bigWig mm9 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF001LMV fastq reads ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 873415933 Bing Ren, UCSD 97c751e2bffc3ab4e4321282863e9c86 https://www.encodeproject.org/files/ENCFF001LMV/@@download/ENCFF001LMV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNY/ released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LMX fastq reads ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 831603429 Bing Ren, UCSD 2997f0b24bdcac54ec02ac864f1d8f4b https://www.encodeproject.org/files/ENCFF001LMX/@@download/ENCFF001LMX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KNX/ released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001YAM bed broadPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 424207 Bing Ren, UCSD 67077251a4a8d3a6601eccce4cb8b7f9 https://www.encodeproject.org/files/ENCFF001YAM/@@download/ENCFF001YAM.bed.gz mm9 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF709TQG bam unfiltered alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LMV, ENCFF018NEO 962568989 ENCODE Processing Pipeline ea930540fcb70a48728f6c1b5b765010 https://www.encodeproject.org/files/ENCFF709TQG/@@download/ENCFF709TQG.bam mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF516FZI bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LMV, ENCFF018NEO 519238766 ENCODE Processing Pipeline 6142c7e75e870d7c8f68d406e5c6fbfa https://www.encodeproject.org/files/ENCFF516FZI/@@download/ENCFF516FZI.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, low read length missing unfiltered alignments insufficient read depth ENCFF769ZWZ bam unfiltered alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LMX, ENCFF018NEO 880291142 ENCODE Processing Pipeline 34d6cf667dc8130b1d13d93a104b084d https://www.encodeproject.org/files/ENCFF769ZWZ/@@download/ENCFF769ZWZ.bam mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF617FBG bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LMX, ENCFF018NEO 433686094 ENCODE Processing Pipeline ab27875b64bf10edf2aebdfc822a2b66 https://www.encodeproject.org/files/ENCFF617FBG/@@download/ENCFF617FBG.bam mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, control low read depth ENCFF919KIP bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 417643502 ENCODE Processing Pipeline 107ad2035b3d7d77c5dd94b0df3554c5 https://www.encodeproject.org/files/ENCFF919KIP/@@download/ENCFF919KIP.bigWig mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF604HCZ bigBed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF930JOQ 8632065 ENCODE Processing Pipeline 1c5f5039590431448430f661868882c7 https://www.encodeproject.org/files/ENCFF604HCZ/@@download/ENCFF604HCZ.bigBed mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF691VDG bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 438964300 ENCODE Processing Pipeline 576a99e3953a2881125d250a978a8c97 https://www.encodeproject.org/files/ENCFF691VDG/@@download/ENCFF691VDG.bigWig mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF930JOQ bed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 4175721 ENCODE Processing Pipeline 776eb10ff945264f38022f5733e44cd3 https://www.encodeproject.org/files/ENCFF930JOQ/@@download/ENCFF930JOQ.bed.gz mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF963BTQ bigBed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF676VZW 8645123 ENCODE Processing Pipeline 0e27f44dc45c97ba16b8eab94b1c93ab https://www.encodeproject.org/files/ENCFF963BTQ/@@download/ENCFF963BTQ.bigBed mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF985NMC bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 330319926 ENCODE Processing Pipeline 4e52cefd81243c624cdbfd294863fb8e https://www.encodeproject.org/files/ENCFF985NMC/@@download/ENCFF985NMC.bigWig mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF586SMQ bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 201367104 ENCODE Processing Pipeline 8cd78ef49da61b6d97f8d9abb9e150f6 https://www.encodeproject.org/files/ENCFF586SMQ/@@download/ENCFF586SMQ.bigWig mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF439CKG bed narrowPeak conservative idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ, ENCFF547MET, ENCFF676VZW, ENCFF930JOQ 550888 ENCODE Processing Pipeline f89de744846a4bbc435b3ccd9b0d5551 https://www.encodeproject.org/files/ENCFF439CKG/@@download/ENCFF439CKG.bed.gz mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF314XOM bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF542WEE 1089230 ENCODE Processing Pipeline 6311bf3ac61b45f05ea014533c0c98e1 https://www.encodeproject.org/files/ENCFF314XOM/@@download/ENCFF314XOM.bigBed mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF425YHR bigWig signal p-value ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 308926252 ENCODE Processing Pipeline 4d3effb0a6d502d1879e4f9d3465529e https://www.encodeproject.org/files/ENCFF425YHR/@@download/ENCFF425YHR.bigWig mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF389SUI bigWig fold change over control ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI 281004834 ENCODE Processing Pipeline c29f225fbeb4fbf6dc3d47c1f4a79cee https://www.encodeproject.org/files/ENCFF389SUI/@@download/ENCFF389SUI.bigWig mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF676VZW bed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF465JMB, ENCFF515GCB, ENCFF617FBG 3639685 ENCODE Processing Pipeline 7039ae0225ecc6fa15b7f61e6fce102a https://www.encodeproject.org/files/ENCFF676VZW/@@download/ENCFF676VZW.bed.gz mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF371UBQ bed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF465JMB, ENCFF515GCB, ENCFF516FZI, ENCFF617FBG 2288101 ENCODE Processing Pipeline 1c62ed001e0aec3127dcbbc802135bfd https://www.encodeproject.org/files/ENCFF371UBQ/@@download/ENCFF371UBQ.bed.gz mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF321JGY bigBed narrowPeak peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ 4954799 ENCODE Processing Pipeline 02713df264aedd83a8256068a4898ee6 https://www.encodeproject.org/files/ENCFF321JGY/@@download/ENCFF321JGY.bigBed mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF651GYW bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF439CKG 1031122 ENCODE Processing Pipeline 616859b4230e57fc18168c6f9a7a02db https://www.encodeproject.org/files/ENCFF651GYW/@@download/ENCFF651GYW.bigBed mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF542WEE bed narrowPeak optimal idr thresholded peaks ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF371UBQ, ENCFF547MET, ENCFF676VZW, ENCFF930JOQ 592190 ENCODE Processing Pipeline 485442bbbd097f4298f1472654f4e7f6 https://www.encodeproject.org/files/ENCFF542WEE/@@download/ENCFF542WEE.bed.gz mm10 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LIO bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LIY 655886713 Bing Ren, UCSD ff91d21de7bd0410ebe7d488669b652a https://www.encodeproject.org/files/ENCFF001LIO/@@download/ENCFF001LIO.bam mm9 released low read length missing unfiltered alignments insufficient read depth ENCFF001LIP bigBed broadPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001YAC 772325 Bing Ren, UCSD cbaf068e4891980701433ac2e6908d65 https://www.encodeproject.org/files/ENCFF001LIP/@@download/ENCFF001LIP.bigBed mm9 released low read length missing unfiltered alignments insufficient read depth ENCFF001LIQ fasta reads ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 272571716 Bing Ren, UCSD 1ce4c2749fd009cc210f576c0445b329 https://www.encodeproject.org/files/ENCFF001LIQ/@@download/ENCFF001LIQ.fasta.gz Illumina Genome Analyzer II /files/ENCFF001KEX/ released low read length missing unfiltered alignments insufficient read depth ENCFF001LIR bigWig signal ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 74672152 Bing Ren, UCSD cd5bb360fd3b7f6ba363298d9725db24 https://www.encodeproject.org/files/ENCFF001LIR/@@download/ENCFF001LIR.bigWig mm9 released low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF001LIS bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LIQ 376062057 Bing Ren, UCSD a8da9a71ed2a19b289a21e67659793a7 https://www.encodeproject.org/files/ENCFF001LIS/@@download/ENCFF001LIS.bam mm9 released low read length missing unfiltered alignments insufficient read depth ENCFF001LIY fastq reads ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 748161937 Bing Ren, UCSD 395a8989661e9371c76790b9df3fede5 https://www.encodeproject.org/files/ENCFF001LIY/@@download/ENCFF001LIY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KEU/ released low read length missing unfiltered alignments insufficient read depth ENCFF001YAC bed broadPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 468131 Bing Ren, UCSD 6254f6bd93a625cd811483e4e4e8a969 https://www.encodeproject.org/files/ENCFF001YAC/@@download/ENCFF001YAC.bed.gz mm9 released low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF377NUX bam unfiltered alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIY, ENCFF018NEO 812994048 ENCODE Processing Pipeline 6dca092053ea624ee2f4ea89baff96f2 https://www.encodeproject.org/files/ENCFF377NUX/@@download/ENCFF377NUX.bam mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF269TJX bam unfiltered alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIQ, ENCFF018NEO 432703351 ENCODE Processing Pipeline 220daf1a5bb5770036bf7001377baa08 https://www.encodeproject.org/files/ENCFF269TJX/@@download/ENCFF269TJX.bam mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF061WVR bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIY, ENCFF018NEO 449095333 ENCODE Processing Pipeline 86018524d1abbaffcf30826a612cdcea https://www.encodeproject.org/files/ENCFF061WVR/@@download/ENCFF061WVR.bam mm10 released low read length missing unfiltered alignments insufficient read depth, control low read depth ENCFF285RBT bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIQ, ENCFF018NEO 208725304 ENCODE Processing Pipeline 4576fb73270b4e92a1eb9d262944317a https://www.encodeproject.org/files/ENCFF285RBT/@@download/ENCFF285RBT.bam mm10 released control low read depth, low read length missing unfiltered alignments insufficient read depth ENCFF360ITA bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 393427388 ENCODE Processing Pipeline 8791db6b2b274da2916e1bd969c5b910 https://www.encodeproject.org/files/ENCFF360ITA/@@download/ENCFF360ITA.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF069PTO bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 474113855 ENCODE Processing Pipeline 836969e0051aaccadf0621ee009aa193 https://www.encodeproject.org/files/ENCFF069PTO/@@download/ENCFF069PTO.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF846EML bigBed narrowPeak conservative idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF926DQD 1109781 ENCODE Processing Pipeline 48f7c05620658a4e4b8f66114f10334f https://www.encodeproject.org/files/ENCFF846EML/@@download/ENCFF846EML.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF339GSH bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 355896775 ENCODE Processing Pipeline d583f92cbc3b4aeb038c8e9f7425f1bc https://www.encodeproject.org/files/ENCFF339GSH/@@download/ENCFF339GSH.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF520LES bed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF061WVR, ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 2682856 ENCODE Processing Pipeline 4bdadefd44917178aae088c233af797b https://www.encodeproject.org/files/ENCFF520LES/@@download/ENCFF520LES.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF844FJE bigBed narrowPeak optimal idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF508CKL 1199405 ENCODE Processing Pipeline ac351b3a87798d7bf6a559f6c041411e https://www.encodeproject.org/files/ENCFF844FJE/@@download/ENCFF844FJE.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF634ZNO bed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 2523345 ENCODE Processing Pipeline d593f3eb14e13163ba33525cb7dd9481 https://www.encodeproject.org/files/ENCFF634ZNO/@@download/ENCFF634ZNO.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF929SPK bigBed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF229BOI 7315533 ENCODE Processing Pipeline 562a2b3b2df3aae973fb21f5601b6fcf https://www.encodeproject.org/files/ENCFF929SPK/@@download/ENCFF929SPK.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF709CZX bigWig signal p-value ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 348457432 ENCODE Processing Pipeline d974e90cac91682673f7b5020a968125 https://www.encodeproject.org/files/ENCFF709CZX/@@download/ENCFF709CZX.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF818DTC bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 231114445 ENCODE Processing Pipeline 6fac73ecffe2943243abdada47587b7c https://www.encodeproject.org/files/ENCFF818DTC/@@download/ENCFF818DTC.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF409PBR bigBed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF520LES 6122436 ENCODE Processing Pipeline 0e81933448e5998c461ae9684995cd0e https://www.encodeproject.org/files/ENCFF409PBR/@@download/ENCFF409PBR.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF867SYU bigWig fold change over control ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF285RBT, ENCFF439WCI, ENCFF683TKC 194264263 ENCODE Processing Pipeline 90da356462ad315ef28e34c563e1571a https://www.encodeproject.org/files/ENCFF867SYU/@@download/ENCFF867SYU.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF229BOI bed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF061WVR, ENCFF439WCI, ENCFF683TKC 3076662 ENCODE Processing Pipeline 6ef32fe6c60b463dc651d178c1c7a482 https://www.encodeproject.org/files/ENCFF229BOI/@@download/ENCFF229BOI.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF904JMP bigBed narrowPeak peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF634ZNO 5130597 ENCODE Processing Pipeline 6d410e469dc5c032f5b2d18644d8784f https://www.encodeproject.org/files/ENCFF904JMP/@@download/ENCFF904JMP.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF926DQD bed narrowPeak conservative idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF229BOI, ENCFF520LES, ENCFF547MET, ENCFF634ZNO 597955 ENCODE Processing Pipeline e583e34b868090b7ab0cbcd43ab5c24a https://www.encodeproject.org/files/ENCFF926DQD/@@download/ENCFF926DQD.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF508CKL bed narrowPeak optimal idr thresholded peaks ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell embryonic male unknown Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF229BOI, ENCFF520LES, ENCFF547MET, ENCFF634ZNO 662595 ENCODE Processing Pipeline 47204ccf6b524aae64a0e776b25956aa https://www.encodeproject.org/files/ENCFF508CKL/@@download/ENCFF508CKL.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF001LPX bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LQH 779560724 Bing Ren, UCSD 70c73b61360a9ed40d2e4131035e7c65 https://www.encodeproject.org/files/ENCFF001LPX/@@download/ENCFF001LPX.bam mm9 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF001LQB bigBed broadPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE ENCFF001YAW 320142 Bing Ren, UCSD f212e2bcfa9b18d7c1d9b4f7b535b3e6 https://www.encodeproject.org/files/ENCFF001LQB/@@download/ENCFF001LQB.bigBed mm9 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF001LQC bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LQI 1050668299 Bing Ren, UCSD 62a6544d6598ba24c47d006afd7f5bde https://www.encodeproject.org/files/ENCFF001LQC/@@download/ENCFF001LQC.bam mm9 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF001LQD bigWig signal ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 63278311 Bing Ren, UCSD 36c1988fdf66619f37ad9af1571faf01 https://www.encodeproject.org/files/ENCFF001LQD/@@download/ENCFF001LQD.bigWig mm9 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF001LQH fastq reads ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 356110106 Bing Ren, UCSD fd5bcc1d64b81df01996b75a81a33d1f https://www.encodeproject.org/files/ENCFF001LQH/@@download/ENCFF001LQH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KUJ/ released inconsistent control read length, mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF001LQI fastq reads ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 1482667027 Bing Ren, UCSD b912f261dd2a6b92f38de945fc532672 https://www.encodeproject.org/files/ENCFF001LQI/@@download/ENCFF001LQI.fastq.gz HiSeq 2000 /files/ENCFF001KUK/ released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF001YAW bed broadPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 202020 Bing Ren, UCSD 611038bfb280a1a93806fee8a98160c1 https://www.encodeproject.org/files/ENCFF001YAW/@@download/ENCFF001YAW.bed.gz mm9 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF455AXI bam unfiltered alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQH, ENCFF018NEO 383881631 ENCODE Processing Pipeline c8f95447fe78bd5a3fd8d530ae0a2441 https://www.encodeproject.org/files/ENCFF455AXI/@@download/ENCFF455AXI.bam mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF870WCT bam unfiltered alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQI, ENCFF018NEO 1610521117 ENCODE Processing Pipeline d17a798016032389794b019ef2af89a9 https://www.encodeproject.org/files/ENCFF870WCT/@@download/ENCFF870WCT.bam mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF835GIQ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LQH, ENCFF018NEO 145463677 ENCODE Processing Pipeline 82af3942a86f7569f5580282181702e3 https://www.encodeproject.org/files/ENCFF835GIQ/@@download/ENCFF835GIQ.bam mm10 released mixed read lengths, mild to moderate bottlenecking, control low read depth, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF023ESZ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQI, ENCFF018NEO 934355228 ENCODE Processing Pipeline 81837bcd74b867e1eadb35adde0efa69 https://www.encodeproject.org/files/ENCFF023ESZ/@@download/ENCFF023ESZ.bam mm10 released mixed read lengths, mild to moderate bottlenecking, control low read depth, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF131XVC bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 232355475 ENCODE Processing Pipeline 7f1ce8756996a14e313b7ee3d94f593e https://www.encodeproject.org/files/ENCFF131XVC/@@download/ENCFF131XVC.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF810GMY bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 579691047 ENCODE Processing Pipeline 47b19033044eb1fca4d3f2273770d6b9 https://www.encodeproject.org/files/ENCFF810GMY/@@download/ENCFF810GMY.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF075YOP bigWig signal p-value ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 585476974 ENCODE Processing Pipeline 90d20cad3afd5819bb8ff3c27e2d265a https://www.encodeproject.org/files/ENCFF075YOP/@@download/ENCFF075YOP.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF008DXY bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 466738806 ENCODE Processing Pipeline 3aead480e3932a1e7a0dc72467e07ce7 https://www.encodeproject.org/files/ENCFF008DXY/@@download/ENCFF008DXY.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF039YHD bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 78627966 ENCODE Processing Pipeline 6ed10e400fef1fa927befb7b90f78b65 https://www.encodeproject.org/files/ENCFF039YHD/@@download/ENCFF039YHD.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF472ZGZ bigWig fold change over control ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 531667358 ENCODE Processing Pipeline 98319b0c39ad0590c90b8802b6fb59ea https://www.encodeproject.org/files/ENCFF472ZGZ/@@download/ENCFF472ZGZ.bigWig mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF893SUP bed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF769FTV, ENCFF835GIQ 1038864 ENCODE Processing Pipeline 63f8e08a553571029a12cf82af08bfc2 https://www.encodeproject.org/files/ENCFF893SUP/@@download/ENCFF893SUP.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF715VNT bed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV, ENCFF835GIQ 6236698 ENCODE Processing Pipeline f3349fb8612918bdbb5bbb6dee00cce5 https://www.encodeproject.org/files/ENCFF715VNT/@@download/ENCFF715VNT.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF023IJI bed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023ESZ, ENCFF242QZL, ENCFF769FTV 6219097 ENCODE Processing Pipeline 5f1ebedb3062247909a335ddcafb6efc https://www.encodeproject.org/files/ENCFF023IJI/@@download/ENCFF023IJI.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF924WEU bigBed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF893SUP 2385482 ENCODE Processing Pipeline 9acc0dc5c2e39f79004b8d9b649e5053 https://www.encodeproject.org/files/ENCFF924WEU/@@download/ENCFF924WEU.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF805ZHC bigBed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF023IJI 13271752 ENCODE Processing Pipeline 7c62447fcb12476bbb127994344b5a0b https://www.encodeproject.org/files/ENCFF805ZHC/@@download/ENCFF805ZHC.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF647ODB bigBed narrowPeak peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF715VNT 13362918 ENCODE Processing Pipeline 3796c69fdec151cd7d771030cede1a92 https://www.encodeproject.org/files/ENCFF647ODB/@@download/ENCFF647ODB.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF012YET bed narrowPeak conservative idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023IJI, ENCFF547MET, ENCFF715VNT, ENCFF893SUP 202259 ENCODE Processing Pipeline 88591adf76d812bf3ab12fcdf6267e79 https://www.encodeproject.org/files/ENCFF012YET/@@download/ENCFF012YET.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF716WCD bigBed narrowPeak conservative idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF012YET 459930 ENCODE Processing Pipeline 216cc16f2823e6ecf1ce51e0214bfd03 https://www.encodeproject.org/files/ENCFF716WCD/@@download/ENCFF716WCD.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF609DMT bigBed narrowPeak optimal idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF319LOC 864358 ENCODE Processing Pipeline 1595fea2d66eb01dce0cc44a8d83322b https://www.encodeproject.org/files/ENCFF609DMT/@@download/ENCFF609DMT.bigBed mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF319LOC bed narrowPeak optimal idr thresholded peaks ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF023IJI, ENCFF547MET, ENCFF715VNT, ENCFF893SUP 486999 ENCODE Processing Pipeline eed84a0b1641898c5b088f213a844092 https://www.encodeproject.org/files/ENCFF319LOC/@@download/ENCFF319LOC.bed.gz mm10 released mixed read lengths, mild to moderate bottlenecking, low read length, inconsistent platforms, moderate library complexity, low read depth missing unfiltered alignments insufficient read length, insufficient read depth, insufficient replicate concordance ENCFF001LHC bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LHO 510852989 Bing Ren, UCSD f475f988145b2f4cadd02da622a7040f https://www.encodeproject.org/files/ENCFF001LHC/@@download/ENCFF001LHC.bam mm9 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LHE bigBed broadPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001XZY 468088 Bing Ren, UCSD d0c5135c37165b66931387ff0d677fd1 https://www.encodeproject.org/files/ENCFF001LHE/@@download/ENCFF001LHE.bigBed mm9 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LHG bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LHN 904441670 Bing Ren, UCSD 879c8c637c30b8d56cd504ff368e4df5 https://www.encodeproject.org/files/ENCFF001LHG/@@download/ENCFF001LHG.bam mm9 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LHH bigWig signal ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 84447489 Bing Ren, UCSD 71de0ca73c5707e7e2fa93f6e5fd1a7d https://www.encodeproject.org/files/ENCFF001LHH/@@download/ENCFF001LHH.bigWig mm9 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF001LHN fastq reads ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 996724043 Bing Ren, UCSD 487aad5c59ead18bcd561780a245dc11 https://www.encodeproject.org/files/ENCFF001LHN/@@download/ENCFF001LHN.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAK/ released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LHO fastq reads ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 908087695 Bing Ren, UCSD fc28d07269c86cceea6530810ac41489 https://www.encodeproject.org/files/ENCFF001LHO/@@download/ENCFF001LHO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KAM/ released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001XZY bed broadPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 328394 Bing Ren, UCSD 157af29dd3668983bfbbbe9234aaa3e8 https://www.encodeproject.org/files/ENCFF001XZY/@@download/ENCFF001XZY.bed.gz mm9 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF194SKC bam unfiltered alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHN, ENCFF018NEO 1141653183 ENCODE Processing Pipeline 967d0825aee0e4d7a537a32340034e72 https://www.encodeproject.org/files/ENCFF194SKC/@@download/ENCFF194SKC.bam mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF782HYA bam unfiltered alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LHO, ENCFF018NEO 935745334 ENCODE Processing Pipeline 6de40ee6ad4e55ac21c7dd8ff450b656 https://www.encodeproject.org/files/ENCFF782HYA/@@download/ENCFF782HYA.bam mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF667KDK bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LHO, ENCFF018NEO 390827538 ENCODE Processing Pipeline 46a09226371fc8b456d154ca69e3ff3d https://www.encodeproject.org/files/ENCFF667KDK/@@download/ENCFF667KDK.bam mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, control low read depth ENCFF661ZQB bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHN, ENCFF018NEO 662499534 ENCODE Processing Pipeline aef33f2133a7a32cc9c4534f001e2dd8 https://www.encodeproject.org/files/ENCFF661ZQB/@@download/ENCFF661ZQB.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, control low read depth, low read length, moderate library complexity, low read depth missing unfiltered alignments insufficient read depth ENCFF344JKN bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 285836481 ENCODE Processing Pipeline 1dbffd98174a928e9c880f93a92ae9a7 https://www.encodeproject.org/files/ENCFF344JKN/@@download/ENCFF344JKN.bigWig mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF867MOQ bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 424924278 ENCODE Processing Pipeline dd95043693d6a3eb40a93b39e1df4883 https://www.encodeproject.org/files/ENCFF867MOQ/@@download/ENCFF867MOQ.bigWig mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF049OXZ bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 317919905 ENCODE Processing Pipeline dfe2a89c98c819da616c10c0b80405b0 https://www.encodeproject.org/files/ENCFF049OXZ/@@download/ENCFF049OXZ.bigWig mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF648MAL bigWig fold change over control ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 152640249 ENCODE Processing Pipeline 1a980b9543fde0811ed4214a496e71f8 https://www.encodeproject.org/files/ENCFF648MAL/@@download/ENCFF648MAL.bigWig mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF447NGZ bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 337515657 ENCODE Processing Pipeline 2c5e83a8c3f4a9210b63ed0917855b0a https://www.encodeproject.org/files/ENCFF447NGZ/@@download/ENCFF447NGZ.bigWig mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF558UQC bed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF111GKZ, ENCFF389ARL, ENCFF667KDK 2912033 ENCODE Processing Pipeline 93896b0437578421d1af6130a2a7f990 https://www.encodeproject.org/files/ENCFF558UQC/@@download/ENCFF558UQC.bed.gz mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF773UWB bigBed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF197CSD 10628736 ENCODE Processing Pipeline a01976b13022ba2a83a2cbbae4f34e5e https://www.encodeproject.org/files/ENCFF773UWB/@@download/ENCFF773UWB.bigBed mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF216CWE bigWig signal p-value ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 384490107 ENCODE Processing Pipeline 0092316a041078ad5b085ede99162e33 https://www.encodeproject.org/files/ENCFF216CWE/@@download/ENCFF216CWE.bigWig mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF197CSD bed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB 4213983 ENCODE Processing Pipeline 3fcf24b2d81019ac33a68dd019ca1cb1 https://www.encodeproject.org/files/ENCFF197CSD/@@download/ENCFF197CSD.bed.gz mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF940XRJ bigBed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF863QLD 11280592 ENCODE Processing Pipeline 021cff9d5799129d654a5af2725da387 https://www.encodeproject.org/files/ENCFF940XRJ/@@download/ENCFF940XRJ.bigBed mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF863QLD bed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF111GKZ, ENCFF389ARL, ENCFF661ZQB, ENCFF667KDK 4761520 ENCODE Processing Pipeline 5ee4ca85e5152f30d510aee06070629a https://www.encodeproject.org/files/ENCFF863QLD/@@download/ENCFF863QLD.bed.gz mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF232GTB bed narrowPeak conservative idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF197CSD, ENCFF547MET, ENCFF558UQC, ENCFF863QLD 332525 ENCODE Processing Pipeline 0e3e73e5367d45fbd51427d5fe80dd0d https://www.encodeproject.org/files/ENCFF232GTB/@@download/ENCFF232GTB.bed.gz mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF357KNB bed narrowPeak optimal idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF197CSD, ENCFF547MET, ENCFF558UQC, ENCFF863QLD 529140 ENCODE Processing Pipeline 10b28a33ce515cb97751db98d2e24758 https://www.encodeproject.org/files/ENCFF357KNB/@@download/ENCFF357KNB.bed.gz mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF957NCK bigBed narrowPeak peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF558UQC 6646285 ENCODE Processing Pipeline 6dc610a5ba5cceb6340c7d38b6f30ced https://www.encodeproject.org/files/ENCFF957NCK/@@download/ENCFF957NCK.bigBed mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF404ARG bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF357KNB 976615 ENCODE Processing Pipeline 0b77b577794bef5f38649e09b0d4edd6 https://www.encodeproject.org/files/ENCFF404ARG/@@download/ENCFF404ARG.bigBed mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF679AST bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF232GTB 693032 ENCODE Processing Pipeline cdc58be6d502ef89d89f3fdb30a9e649 https://www.encodeproject.org/files/ENCFF679AST/@@download/ENCFF679AST.bigBed mm10 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LST bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LTF 281621714 Bing Ren, UCSD b33d542b605c21f22841308ae934f17c https://www.encodeproject.org/files/ENCFF001LST/@@download/ENCFF001LST.bam mm9 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LSW bigBed broadPeak peaks ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE ENCFF001YBE 633531 Bing Ren, UCSD 55ca3863ecc04b9d7efb2aa7b13643bb https://www.encodeproject.org/files/ENCFF001LSW/@@download/ENCFF001LSW.bigBed mm9 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LSY bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LTG 736800904 Bing Ren, UCSD 027793c56c06df1cfa5c18600263f3ac https://www.encodeproject.org/files/ENCFF001LSY/@@download/ENCFF001LSY.bam mm9 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LTB bigWig signal ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 65249261 Bing Ren, UCSD 1894edf7a0338c1b9b71a6e0b565d334 https://www.encodeproject.org/files/ENCFF001LTB/@@download/ENCFF001LTB.bigWig mm9 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth ENCFF001LTF fastq reads ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 30 single-ended 280421271 Bing Ren, UCSD 9b0813bea40144999f4aba6f2f2b10e2 https://www.encodeproject.org/files/ENCFF001LTF/@@download/ENCFF001LTF.fastq.gz Illumina Genome Analyzer II /files/ENCFF786ODW/ released inconsistent control read length, inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001LTG fastq reads ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 30 single-ended 737402777 Bing Ren, UCSD dbf811d844e64ec9d460b0bdaa25abac https://www.encodeproject.org/files/ENCFF001LTG/@@download/ENCFF001LTG.fastq.gz HiSeq 2000 /files/ENCFF001LAO/ released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001YBE bed broadPeak peaks ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 497306 Bing Ren, UCSD 98b652fd83d5bd6d58161679842911af https://www.encodeproject.org/files/ENCFF001YBE/@@download/ENCFF001YBE.bed.gz mm9 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments, missing derived_from insufficient read length, insufficient read depth ENCFF680JXU bam unfiltered alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTG, ENCFF018NEO 774056190 ENCODE Processing Pipeline 2abb7f8da4ef40cea51423c5d4a80848 https://www.encodeproject.org/files/ENCFF680JXU/@@download/ENCFF680JXU.bam mm10 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth ENCFF419YGX bam unfiltered alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTF, ENCFF018NEO 300093533 ENCODE Processing Pipeline 1d9c2d75299399fd760ea74cf2c64676 https://www.encodeproject.org/files/ENCFF419YGX/@@download/ENCFF419YGX.bam mm10 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth ENCFF670HMJ bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTG, ENCFF018NEO 344478412 ENCODE Processing Pipeline 1deb1953f353f9ce994c66c74766293f https://www.encodeproject.org/files/ENCFF670HMJ/@@download/ENCFF670HMJ.bam mm10 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking missing unfiltered alignments insufficient read length, insufficient read depth, control low read depth ENCFF359OGF bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue embryonic mixed 14.5 day Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTF, ENCFF018NEO 131584552 ENCODE Processing Pipeline 2695302c830392a04ca60085c410d673 https://www.encodeproject.org/files/ENCFF359OGF/@@download/ENCFF359OGF.bam mm10 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, control low read depth missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001MLC bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 712711351 Ross Hardison, PennState 754bc2adc51fec6a7228d683c8f6cfbe https://www.encodeproject.org/files/ENCFF001MLC/@@download/ENCFF001MLC.bam mm9 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MLD bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 950918917 Ross Hardison, PennState a61dddd59b2e8daa7f7b160c492bb689 https://www.encodeproject.org/files/ENCFF001MLD/@@download/ENCFF001MLD.bam mm9 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MLE bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE ENCFF001YEH 718435 Ross Hardison, PennState acb6168aeb3e491d98925cc5d2c8e2fe https://www.encodeproject.org/files/ENCFF001MLE/@@download/ENCFF001MLE.bigBed mm9 archived inconsistent platforms, low read depth, low read length ENCFF001MLF fastq reads ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 607480699 Ross Hardison, PennState 13cb55536563e2f404ef8356ca31096c https://www.encodeproject.org/files/ENCFF001MLF/@@download/ENCFF001MLF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MLS/ released inconsistent platforms, low read depth, low read length ENCFF001MLG fastq reads ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 36 single-ended 806190305 Ross Hardison, PennState cb106f71623b64b241c3bf8647d34d52 https://www.encodeproject.org/files/ENCFF001MLG/@@download/ENCFF001MLG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MLY/ released inconsistent control read length, inconsistent platforms, low read depth, low read length ENCFF001MLH bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEI 529031 Ross Hardison, PennState 2a0c6497186dcc759975019f4d95010d https://www.encodeproject.org/files/ENCFF001MLH/@@download/ENCFF001MLH.bigBed mm9 archived inconsistent platforms, low read depth, low read length ENCFF001MLI bigBed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEJ 622530 Ross Hardison, PennState f28a4f157e773ceb1ddcbe0f6fa359f5 https://www.encodeproject.org/files/ENCFF001MLI/@@download/ENCFF001MLI.bigBed mm9 archived inconsistent platforms, low read depth, low read length ENCFF001MLJ bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 2734187727 Ross Hardison, PennState 677d897c5951a513e79af200b3c4dbb9 https://www.encodeproject.org/files/ENCFF001MLJ/@@download/ENCFF001MLJ.bigWig mm9 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MLL bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 3350621395 Ross Hardison, PennState af9c3b2482eee936cb314cf7ff0317ac https://www.encodeproject.org/files/ENCFF001MLL/@@download/ENCFF001MLL.bigWig mm9 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF001MLN bigWig signal ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 4168038529 Ross Hardison, PennState f8ab794394be26e8a5a6c8ef656110d4 https://www.encodeproject.org/files/ENCFF001MLN/@@download/ENCFF001MLN.bigWig mm9 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF001YEH bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 459472 Ross Hardison, PennState b660915c9181423a917523b5b503bbb7 https://www.encodeproject.org/files/ENCFF001YEH/@@download/ENCFF001YEH.bed.gz mm9 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF001YEI bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 325034 Ross Hardison, PennState 507e3ea67e41cf2f31f49dd86dc33fd6 https://www.encodeproject.org/files/ENCFF001YEI/@@download/ENCFF001YEI.bed.gz mm9 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF001YEJ bed broadPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 368527 Ross Hardison, PennState e9256686dfab3c9b4969b2969c866915 https://www.encodeproject.org/files/ENCFF001YEJ/@@download/ENCFF001YEJ.bed.gz mm9 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF572OOM bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MLG, ENCFF018NEO 721210553 ENCODE Processing Pipeline 48caea704afd9d07d65699d70cfa16b7 https://www.encodeproject.org/files/ENCFF572OOM/@@download/ENCFF572OOM.bam mm10 released inconsistent platforms, low read depth, low read length ENCFF647VRB bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MLF, ENCFF018NEO 542081189 ENCODE Processing Pipeline 1b563fa83cf177b0aa0cb86f4fa85be1 https://www.encodeproject.org/files/ENCFF647VRB/@@download/ENCFF647VRB.bam mm10 released inconsistent platforms, low read depth, control low read depth, low read length ENCFF868BBI bam unfiltered alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MLF, ENCFF018NEO 751673017 ENCODE Processing Pipeline e639111bf5ba4d6317c5d7658e0248db https://www.encodeproject.org/files/ENCFF868BBI/@@download/ENCFF868BBI.bam mm10 released inconsistent platforms, low read depth, low read length ENCFF263RYZ bam unfiltered alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MLG, ENCFF018NEO 1019973809 ENCODE Processing Pipeline 9af021216b044a93dc01897a553ed6d2 https://www.encodeproject.org/files/ENCFF263RYZ/@@download/ENCFF263RYZ.bam mm10 released inconsistent platforms, low read depth, low read length ENCFF631JAQ bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 691366940 ENCODE Processing Pipeline 6d283ba4053718b61fa7c810d9092c9f https://www.encodeproject.org/files/ENCFF631JAQ/@@download/ENCFF631JAQ.bigWig mm10 released inconsistent platforms, low read depth, low read length ENCFF995TTU bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 819207950 ENCODE Processing Pipeline d7b1d9c8cfaf4e50e15003b675c43066 https://www.encodeproject.org/files/ENCFF995TTU/@@download/ENCFF995TTU.bigWig mm10 released inconsistent platforms, low read depth, low read length ENCFF923OBH bigWig signal p-value ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 881440500 ENCODE Processing Pipeline 0b146a2cc2ce851e216837971301cb95 https://www.encodeproject.org/files/ENCFF923OBH/@@download/ENCFF923OBH.bigWig mm10 released inconsistent platforms, low read depth, low read length ENCFF980OLE bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 692018007 ENCODE Processing Pipeline 41ce349593596cca71049029dd73bf42 https://www.encodeproject.org/files/ENCFF980OLE/@@download/ENCFF980OLE.bigWig mm10 released inconsistent platforms, low read depth, low read length ENCFF504OHG bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 508922016 ENCODE Processing Pipeline 6fd180e72114944b71776f7449bcdc69 https://www.encodeproject.org/files/ENCFF504OHG/@@download/ENCFF504OHG.bigWig mm10 released inconsistent platforms, low read depth, low read length ENCFF844EOO bigWig fold change over control ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 914199303 ENCODE Processing Pipeline 28df81cd95383ff7b16f6fa38c5e51c0 https://www.encodeproject.org/files/ENCFF844EOO/@@download/ENCFF844EOO.bigWig mm10 released inconsistent platforms, low read depth, low read length ENCFF173SFG bed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF318FKF, ENCFF647VRB, ENCFF867VYO 5985352 ENCODE Processing Pipeline 36ab5b133fba34e67401c4c1017148e1 https://www.encodeproject.org/files/ENCFF173SFG/@@download/ENCFF173SFG.bed.gz mm10 released inconsistent platforms, low read depth, low read length ENCFF800OVO bigBed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF210RNE 13641968 ENCODE Processing Pipeline efd69a49353d077ae78d26d3ed1c77ff https://www.encodeproject.org/files/ENCFF800OVO/@@download/ENCFF800OVO.bigBed mm10 released inconsistent platforms, low read depth, low read length ENCFF844FUF bed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF318FKF, ENCFF572OOM, ENCFF867VYO 5709286 ENCODE Processing Pipeline 052d661edef6cfcab1526bd751eab798 https://www.encodeproject.org/files/ENCFF844FUF/@@download/ENCFF844FUF.bed.gz mm10 released inconsistent platforms, low read depth, low read length ENCFF743VIT bed narrowPeak conservative idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF173SFG, ENCFF210RNE, ENCFF547MET, ENCFF844FUF 431875 ENCODE Processing Pipeline 6963d12936de0a9d174aee666c5ed791 https://www.encodeproject.org/files/ENCFF743VIT/@@download/ENCFF743VIT.bed.gz mm10 released inconsistent platforms, low read depth, low read length ENCFF112IBI bed narrowPeak optimal idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF173SFG, ENCFF210RNE, ENCFF547MET, ENCFF844FUF 433324 ENCODE Processing Pipeline c6fb1e9f83feb30317b951668b09b110 https://www.encodeproject.org/files/ENCFF112IBI/@@download/ENCFF112IBI.bed.gz mm10 released inconsistent platforms, low read depth, low read length ENCFF685XHR bigBed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF173SFG 13267694 ENCODE Processing Pipeline 57f3a60b2184cf28fdf7b260b171abd4 https://www.encodeproject.org/files/ENCFF685XHR/@@download/ENCFF685XHR.bigBed mm10 released inconsistent platforms, low read depth, low read length ENCFF984EPF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF112IBI 772031 ENCODE Processing Pipeline efabaf3bf3c980cdc9cb445f91d22171 https://www.encodeproject.org/files/ENCFF984EPF/@@download/ENCFF984EPF.bigBed mm10 released inconsistent platforms, low read depth, low read length ENCFF210RNE bed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF318FKF, ENCFF572OOM, ENCFF647VRB, ENCFF867VYO 6483099 ENCODE Processing Pipeline 8cf802e0d685ac8710d3af9a7fa54a7d https://www.encodeproject.org/files/ENCFF210RNE/@@download/ENCFF210RNE.bed.gz mm10 released inconsistent platforms, low read depth, low read length ENCFF455CGR bigBed narrowPeak peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF844FUF 11336528 ENCODE Processing Pipeline 301177ff56aca04c4acd1b681556c172 https://www.encodeproject.org/files/ENCFF455CGR/@@download/ENCFF455CGR.bigBed mm10 released inconsistent platforms, low read depth, low read length ENCFF615ZDE bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX immortalized cell line unknown female unknown Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF743VIT 768536 ENCODE Processing Pipeline c8011e9ecdc6247d6751a8285f11c02e https://www.encodeproject.org/files/ENCFF615ZDE/@@download/ENCFF615ZDE.bigBed mm10 released inconsistent platforms, low read depth, low read length ENCFF320KGQ fastq reads ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1074085655 Richard Myers, HAIB 1e743e6524539c8817bb146ada8c2a98 SRA:SRR5111179 https://www.encodeproject.org/files/ENCFF320KGQ/@@download/ENCFF320KGQ.fastq.gz HiSeq 2000 /files/ENCFF787LKE/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF024MXS fastq reads ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1407393091 Richard Myers, HAIB 0fd358519919412a579bfc33a07c063e SRA:SRR5111178 https://www.encodeproject.org/files/ENCFF024MXS/@@download/ENCFF024MXS.fastq.gz HiSeq 2000 /files/ENCFF787LKE/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF670KVQ bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF320KGQ, ENCFF806TVZ 861215974 ENCODE Processing Pipeline 5aae8b0c47cc727a4fcb7c5fb75c94bd https://www.encodeproject.org/files/ENCFF670KVQ/@@download/ENCFF670KVQ.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF567NZA bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF024MXS, ENCFF806TVZ 1106855829 ENCODE Processing Pipeline 10bf525a791724e1a9e951c130c5019d https://www.encodeproject.org/files/ENCFF567NZA/@@download/ENCFF567NZA.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF880IOE bam unfiltered alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF024MXS 1475148937 ENCODE Processing Pipeline f73c770a24afa036c8b43690d3758fde https://www.encodeproject.org/files/ENCFF880IOE/@@download/ENCFF880IOE.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF682ZRK bam unfiltered alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF320KGQ 1133298867 ENCODE Processing Pipeline b2703240814894c4ab033995f4ff030d https://www.encodeproject.org/files/ENCFF682ZRK/@@download/ENCFF682ZRK.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF669TDH bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF320KGQ 861135818 ENCODE Processing Pipeline 06492bff37c8cc8b15dafefc8d0d556b https://www.encodeproject.org/files/ENCFF669TDH/@@download/ENCFF669TDH.bam mm10 released antibody characterized with exemption, low read depth, control low read depth NTR biosample, biological replicates with identical biosample ENCFF748CWC bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF024MXS 1106721174 ENCODE Processing Pipeline 46516b80c0e373adce07483fda8b1f8c https://www.encodeproject.org/files/ENCFF748CWC/@@download/ENCFF748CWC.bam mm10 released antibody characterized with exemption, low read depth, control low read depth NTR biosample, biological replicates with identical biosample ENCFF145CPH bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 320059809 ENCODE Processing Pipeline 92aaebe184a2d6753872e1dc66434be7 https://www.encodeproject.org/files/ENCFF145CPH/@@download/ENCFF145CPH.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF665MXC bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 318040832 ENCODE Processing Pipeline 26198951d656988797b2f1253c9cc25a https://www.encodeproject.org/files/ENCFF665MXC/@@download/ENCFF665MXC.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF036ACY bed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 5264286 ENCODE Processing Pipeline 602519cd7874f8d4abbfbe628a067f61 https://www.encodeproject.org/files/ENCFF036ACY/@@download/ENCFF036ACY.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF640IKM bigWig signal p-value ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 308663630 ENCODE Processing Pipeline caf30eebdb1df44671eaf3539e6406ec https://www.encodeproject.org/files/ENCFF640IKM/@@download/ENCFF640IKM.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF273HAY bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 285327551 ENCODE Processing Pipeline 457b072b628ec8d2b909bb7550794602 https://www.encodeproject.org/files/ENCFF273HAY/@@download/ENCFF273HAY.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF677WOX bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF493AJV, ENCFF748CWC 385336833 ENCODE Processing Pipeline 2660f8b15a242c0c83a4b63995f7f06e https://www.encodeproject.org/files/ENCFF677WOX/@@download/ENCFF677WOX.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF636SDF bed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 5135103 ENCODE Processing Pipeline bc7543272dc050c215c13591edec0bfc https://www.encodeproject.org/files/ENCFF636SDF/@@download/ENCFF636SDF.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF251FHP bigWig fold change over control ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF493AJV, ENCFF669TDH, ENCFF748CWC 569653823 ENCODE Processing Pipeline 0753352294f2fe7f79ec6444c73f082c https://www.encodeproject.org/files/ENCFF251FHP/@@download/ENCFF251FHP.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF242NJN bed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF493AJV, ENCFF669TDH 4891991 ENCODE Processing Pipeline 9d8ec6beac5b14cc2b3196d75aa8b69b https://www.encodeproject.org/files/ENCFF242NJN/@@download/ENCFF242NJN.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF045EUI bigBed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF242NJN 10831588 ENCODE Processing Pipeline 7be662de11b29d1ab9ab040ea94abc3b https://www.encodeproject.org/files/ENCFF045EUI/@@download/ENCFF045EUI.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF260XLJ bigBed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF036ACY 11025982 ENCODE Processing Pipeline 7d19c63da459aa40802057adb8982efd https://www.encodeproject.org/files/ENCFF260XLJ/@@download/ENCFF260XLJ.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF268HZV bed narrowPeak conservative idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF036ACY, ENCFF242NJN, ENCFF547MET, ENCFF636SDF 964419 ENCODE Processing Pipeline d26c774b305c957972ed94cf1ba7c0b1 https://www.encodeproject.org/files/ENCFF268HZV/@@download/ENCFF268HZV.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF731MTR bigBed narrowPeak peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF636SDF 9688369 ENCODE Processing Pipeline 0fc7fe8285cf7740de5b26e1ec7f8d6b https://www.encodeproject.org/files/ENCFF731MTR/@@download/ENCFF731MTR.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF852CPY bigBed narrowPeak conservative idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF268HZV 1946346 ENCODE Processing Pipeline ffcfd6cf34a402ae43c736446eb8f7d0 https://www.encodeproject.org/files/ENCFF852CPY/@@download/ENCFF852CPY.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF308FHB bed narrowPeak optimal idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF036ACY, ENCFF242NJN, ENCFF547MET, ENCFF636SDF 1008807 ENCODE Processing Pipeline 18c6f76162003817c8615d42b2228fbe https://www.encodeproject.org/files/ENCFF308FHB/@@download/ENCFF308FHB.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF868NVS bigBed narrowPeak optimal idr thresholded peaks ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF308FHB 2011236 ENCODE Processing Pipeline 046173a88a9a3e5b331df3829732cc6c https://www.encodeproject.org/files/ENCFF868NVS/@@download/ENCFF868NVS.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF001MNM bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 724870726 Ross Hardison, PennState 1acdd455b9275d5efb04c9d9bf4659cd https://www.encodeproject.org/files/ENCFF001MNM/@@download/ENCFF001MNM.bam mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001MNN bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 1398070950 Ross Hardison, PennState 2bf8b94d738e90dd51cdce3a6506a0ca https://www.encodeproject.org/files/ENCFF001MNN/@@download/ENCFF001MNN.bam mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001MNO bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE ENCFF001YEU 535600 Ross Hardison, PennState d8a6c2ae4fd99992124fd20a4546f342 https://www.encodeproject.org/files/ENCFF001MNO/@@download/ENCFF001MNO.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF001MNP fastq reads ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 36 single-ended 564774383 Ross Hardison, PennState 9075ac7bcb26c6ad9c92e5729e27523e https://www.encodeproject.org/files/ENCFF001MNP/@@download/ENCFF001MNP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MOR/ released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF001MNQ bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 ENCFF001YEV 489627 Ross Hardison, PennState 004294bc1b11c9258fca8bf47f9c73f3 https://www.encodeproject.org/files/ENCFF001MNQ/@@download/ENCFF001MNQ.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF001MNR bigBed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 ENCFF001YEX 451668 Ross Hardison, PennState 8025296ca9a9647c37e0f2a64567b4c5 https://www.encodeproject.org/files/ENCFF001MNR/@@download/ENCFF001MNR.bigBed mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF001MNS bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 2612594502 Ross Hardison, PennState 2558eafa7ae5c20e7d36677504e0dbe3 https://www.encodeproject.org/files/ENCFF001MNS/@@download/ENCFF001MNS.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001MNT bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 3122548713 Ross Hardison, PennState e9dfbea84a2b9062f231e5d6cdef5efe https://www.encodeproject.org/files/ENCFF001MNT/@@download/ENCFF001MNT.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001MNU bigWig signal ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 4052610359 Ross Hardison, PennState e1b5adab26205c4e06fbbbf782798dbb https://www.encodeproject.org/files/ENCFF001MNU/@@download/ENCFF001MNU.bigWig mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001MNV fastq reads ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 41 single-ended 1107370733 Ross Hardison, PennState cab53378da43a11ab9a3c918927e9a4c https://www.encodeproject.org/files/ENCFF001MNV/@@download/ENCFF001MNV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001MPG/ released inconsistent control read length, mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF001YEU bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 298243 Ross Hardison, PennState aa39700ec32bb13480653ed76d0e4d3e https://www.encodeproject.org/files/ENCFF001YEU/@@download/ENCFF001YEU.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001YEV bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 1 279211 Ross Hardison, PennState 5b60df8e605ee0b72b14ebd9b73c6f67 https://www.encodeproject.org/files/ENCFF001YEV/@@download/ENCFF001YEV.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001YEX bed broadPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 1 223217 Ross Hardison, PennState 5b84c91b8d8f0cbe07fe75c5d24c4756 https://www.encodeproject.org/files/ENCFF001YEX/@@download/ENCFF001YEX.bed.gz mm9 archived mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF004XMS bam unfiltered alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MNP, ENCFF018NEO 762619367 ENCODE Processing Pipeline 49679af3b5028ddc06597028adb2c7d3 https://www.encodeproject.org/files/ENCFF004XMS/@@download/ENCFF004XMS.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF680QQJ bam unfiltered alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MNV, ENCFF018NEO 1349102273 ENCODE Processing Pipeline 4412069931a63a3ab7ad8cda978e62cf https://www.encodeproject.org/files/ENCFF680QQJ/@@download/ENCFF680QQJ.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF553QQS bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MNV, ENCFF018NEO 926297627 ENCODE Processing Pipeline 99fa0839ea5c83dd0a5f8266038b7e5d https://www.encodeproject.org/files/ENCFF553QQS/@@download/ENCFF553QQS.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF585RBR bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MNP, ENCFF018NEO 534736853 ENCODE Processing Pipeline 1f724a5e005653f6845584d2583c5264 https://www.encodeproject.org/files/ENCFF585RBR/@@download/ENCFF585RBR.bam mm10 released mixed read lengths, inconsistent platforms, low read depth, control low read depth, low read length biological replicates with identical biosample ENCFF219QWY bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 738278903 ENCODE Processing Pipeline c741683ff1bd86d0ed9c84eb7581c13d https://www.encodeproject.org/files/ENCFF219QWY/@@download/ENCFF219QWY.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF131LGX bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 866766027 ENCODE Processing Pipeline 3b4450324a5cd10d01b1e630e0fb8080 https://www.encodeproject.org/files/ENCFF131LGX/@@download/ENCFF131LGX.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF669WRO bigWig signal p-value ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 1039215842 ENCODE Processing Pipeline ae3276f1f08768a0e5c875a8a0591a0b https://www.encodeproject.org/files/ENCFF669WRO/@@download/ENCFF669WRO.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF045SCM bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 535137517 ENCODE Processing Pipeline fb02c8b6e6be0086f79a32ff0b037da0 https://www.encodeproject.org/files/ENCFF045SCM/@@download/ENCFF045SCM.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF037HAV bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 813078390 ENCODE Processing Pipeline 0e009b251a0b98bfdb0aa487038591b5 https://www.encodeproject.org/files/ENCFF037HAV/@@download/ENCFF037HAV.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF938UFC bigWig fold change over control ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 1055694366 ENCODE Processing Pipeline a44c773bf4520705876be70c65faf977 https://www.encodeproject.org/files/ENCFF938UFC/@@download/ENCFF938UFC.bigWig mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF925MJG bed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF089UFL, ENCFF585RBR, ENCFF984QUA 5490008 ENCODE Processing Pipeline e5b7d532e299a907a9539ef35b8eb022 https://www.encodeproject.org/files/ENCFF925MJG/@@download/ENCFF925MJG.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF550GOV bigBed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1 ENCFF925MJG 11133799 ENCODE Processing Pipeline 05da7f4a4256caf6021f742649bdc6c6 https://www.encodeproject.org/files/ENCFF550GOV/@@download/ENCFF550GOV.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF740XUP bigBed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF983MKP 11328730 ENCODE Processing Pipeline 19380a2af033a6064b3dcb1302cee65f https://www.encodeproject.org/files/ENCFF740XUP/@@download/ENCFF740XUP.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF477PTQ bigBed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF957QMK 11367508 ENCODE Processing Pipeline 2d94182ea2e89b86a9398205437e5a02 https://www.encodeproject.org/files/ENCFF477PTQ/@@download/ENCFF477PTQ.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF983MKP bed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 2 ENCFF089UFL, ENCFF553QQS, ENCFF984QUA 5651008 ENCODE Processing Pipeline dd3a6e1640555ed6e2c7ffcfb2790f28 https://www.encodeproject.org/files/ENCFF983MKP/@@download/ENCFF983MKP.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF957QMK bed narrowPeak peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF089UFL, ENCFF553QQS, ENCFF585RBR, ENCFF984QUA 6294733 ENCODE Processing Pipeline 7d1f92e141f865ad7442b7c9e06c900f https://www.encodeproject.org/files/ENCFF957QMK/@@download/ENCFF957QMK.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF856JMM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF437CLA 522263 ENCODE Processing Pipeline 8c9b66ac2c8aa0f7e0f6e6f614be2876 https://www.encodeproject.org/files/ENCFF856JMM/@@download/ENCFF856JMM.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF437CLA bed narrowPeak conservative idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF547MET, ENCFF925MJG, ENCFF957QMK, ENCFF983MKP 263884 ENCODE Processing Pipeline 2cccab7ae97ec652dd0c4f3f24c27031 https://www.encodeproject.org/files/ENCFF437CLA/@@download/ENCFF437CLA.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF976DPO bed narrowPeak optimal idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF547MET, ENCFF925MJG, ENCFF957QMK, ENCFF983MKP 272466 ENCODE Processing Pipeline 2853e82cc05b43e058e0d2458deb89a0 https://www.encodeproject.org/files/ENCFF976DPO/@@download/ENCFF976DPO.bed.gz mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF247QFC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DIS ChIP-seq EFO:0002034 G1E immortalized cell line postnatal male 0 day Mus musculus CTCF-mouse ENCAB000AXT DNA see document see document False 2012-02-13 ENCODE 1, 2 ENCFF976DPO 534927 ENCODE Processing Pipeline 934f49ed770fb6a7dae48c11cf0d69a1 https://www.encodeproject.org/files/ENCFF247QFC/@@download/ENCFF247QFC.bigBed mm10 released mixed read lengths, inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF001NQR bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1 ENCFF001NQU 428286373 Michael Snyder, Stanford 41b4fa8c6605822a8a7b5fbf5120edce https://www.encodeproject.org/files/ENCFF001NQR/@@download/ENCFF001NQR.bam mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NQS bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 2 ENCFF001NQW 423624974 Michael Snyder, Stanford 593f048d56fec79b4af7d8af33b2b776 https://www.encodeproject.org/files/ENCFF001NQS/@@download/ENCFF001NQS.bam mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NQT bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE ENCFF001YJH 2970789 Michael Snyder, Stanford d9c869144bd403e945ea1a8b8da7491c https://www.encodeproject.org/files/ENCFF001NQT/@@download/ENCFF001NQT.bigBed mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NQU fastq reads ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1 1 36 single-ended 971475366 Michael Snyder, Stanford 0aff2ad97e02a628bdc8c77e1295893e https://www.encodeproject.org/files/ENCFF001NQU/@@download/ENCFF001NQU.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTS/ released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NQW fastq reads ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 2 1 36 single-ended 943303315 Michael Snyder, Stanford a81c6f1a8beb3cc77c48e3f6f4744b76 https://www.encodeproject.org/files/ENCFF001NQW/@@download/ENCFF001NQW.fastq.gz Illumina Genome Analyzer /files/ENCFF001NTU/ released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001NQY bigWig signal ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 303778333 Michael Snyder, Stanford e3e9d292327e90ab442ed7261e63f707 https://www.encodeproject.org/files/ENCFF001NQY/@@download/ENCFF001NQY.bigWig mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF001YJH bed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1172175 Michael Snyder, Stanford 75671555a6b2b7ee0cc80b27f8232696 https://www.encodeproject.org/files/ENCFF001YJH/@@download/ENCFF001YJH.bed.gz mm9 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF895QHK bam unfiltered alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NQW, ENCFF018NEO 987933688 ENCODE Processing Pipeline 46d0f3b037c29c750736b9bcdc98d3c0 https://www.encodeproject.org/files/ENCFF895QHK/@@download/ENCFF895QHK.bam mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF020AKZ bam unfiltered alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NQU, ENCFF018NEO 1003312563 ENCODE Processing Pipeline f04cfbec7a245d59d9ffea1d8225cca3 https://www.encodeproject.org/files/ENCFF020AKZ/@@download/ENCFF020AKZ.bam mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF985CUW bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NQU, ENCFF018NEO 610485955 ENCODE Processing Pipeline 8131bd3f2960fe0de7233c097b28d7b6 https://www.encodeproject.org/files/ENCFF985CUW/@@download/ENCFF985CUW.bam mm10 released mild to moderate bottlenecking, control low read depth, low read length, inconsistent platforms, low read depth, moderate library complexity missing unfiltered alignments, biological replicates with identical biosample ENCFF284CFB bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NQW, ENCFF018NEO 610945438 ENCODE Processing Pipeline 23a94bbc142d3cb34c911c39da132a7b https://www.encodeproject.org/files/ENCFF284CFB/@@download/ENCFF284CFB.bam mm10 released mild to moderate bottlenecking, control low read depth, low read length, inconsistent platforms, low read depth, moderate library complexity missing unfiltered alignments, biological replicates with identical biosample ENCFF069TSU bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 540589168 ENCODE Processing Pipeline e2605642c15ffb692ef28b7e242aa2a7 https://www.encodeproject.org/files/ENCFF069TSU/@@download/ENCFF069TSU.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF586QBC bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 480493127 ENCODE Processing Pipeline 17c73b3b54ea363174cdda5433ae41dc https://www.encodeproject.org/files/ENCFF586QBC/@@download/ENCFF586QBC.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF695GWJ bigWig signal p-value ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 420085509 ENCODE Processing Pipeline d5f3bcaa7f156ce83b7191b656d6d4d0 https://www.encodeproject.org/files/ENCFF695GWJ/@@download/ENCFF695GWJ.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF762XWB bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 323632906 ENCODE Processing Pipeline dbefbc87e01436303b36de6b06d283da https://www.encodeproject.org/files/ENCFF762XWB/@@download/ENCFF762XWB.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF605IRU bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 314138564 ENCODE Processing Pipeline ebfa16c1b35ff8c575c96c2266be32b6 https://www.encodeproject.org/files/ENCFF605IRU/@@download/ENCFF605IRU.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF056UBA bigWig fold change over control ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 520489649 ENCODE Processing Pipeline df45d7684eb5bde900f092b32014c241 https://www.encodeproject.org/files/ENCFF056UBA/@@download/ENCFF056UBA.bigWig mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF957XPC bed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1 ENCFF277LUN, ENCFF479KKI, ENCFF985CUW 4956899 ENCODE Processing Pipeline de00fcf69485a3923ec9cb1563120d11 https://www.encodeproject.org/files/ENCFF957XPC/@@download/ENCFF957XPC.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF406PTJ bed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI 4791136 ENCODE Processing Pipeline cc548b90e3c30b2e463d8872d295b283 https://www.encodeproject.org/files/ENCFF406PTJ/@@download/ENCFF406PTJ.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF237CIS bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 2 ENCFF406PTJ 10950591 ENCODE Processing Pipeline 56dc2f1d6443cb4a69a06eba41d2b98b https://www.encodeproject.org/files/ENCFF237CIS/@@download/ENCFF237CIS.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF897SDH bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1 ENCFF957XPC 10998333 ENCODE Processing Pipeline 8d4d91ba9f0c921fee215d3b1fae1fd1 https://www.encodeproject.org/files/ENCFF897SDH/@@download/ENCFF897SDH.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF855DZF bed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF277LUN, ENCFF284CFB, ENCFF479KKI, ENCFF985CUW 5451660 ENCODE Processing Pipeline 1cb731023345fce8f1f14b14ca1ca928 https://www.encodeproject.org/files/ENCFF855DZF/@@download/ENCFF855DZF.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF965XFW bed narrowPeak conservative idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF406PTJ, ENCFF547MET, ENCFF855DZF, ENCFF957XPC 605994 ENCODE Processing Pipeline ce3443ca071c3ec6b3b91dc54518b95f https://www.encodeproject.org/files/ENCFF965XFW/@@download/ENCFF965XFW.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF154JIT bigBed narrowPeak peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF855DZF 11428941 ENCODE Processing Pipeline 8cd0188f699a8030f19b917607253364 https://www.encodeproject.org/files/ENCFF154JIT/@@download/ENCFF154JIT.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF476QLM bigBed narrowPeak conservative idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF965XFW 1091816 ENCODE Processing Pipeline 006699f953ef4de173ac3292a80325aa https://www.encodeproject.org/files/ENCFF476QLM/@@download/ENCFF476QLM.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF430UBN bigBed narrowPeak optimal idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF235LMU 1189602 ENCODE Processing Pipeline 8663a774dd80cb54c4211088966eeeb1 https://www.encodeproject.org/files/ENCFF430UBN/@@download/ENCFF430UBN.bigBed mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF235LMU bed narrowPeak optimal idr thresholded peaks ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line immortalized cell line unknown unknown unknown week Mus musculus dimethyl sulfoxide CTCF-mouse ENCAB000AFQ DNA see document see document False 2012-06-15 ENCODE 1, 2 ENCFF406PTJ, ENCFF547MET, ENCFF855DZF, ENCFF957XPC 677637 ENCODE Processing Pipeline bfe9bbfe82c380439b73ca07c830ff17 https://www.encodeproject.org/files/ENCFF235LMU/@@download/ENCFF235LMU.bed.gz mm10 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample ENCFF001LRM bigBed broadPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE ENCFF001YBA 355901 Bing Ren, UCSD 9d6110d201fae502ad84832cb43601a5 https://www.encodeproject.org/files/ENCFF001LRM/@@download/ENCFF001LRM.bigBed mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF001LRN bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF001LRW 252847852 Bing Ren, UCSD 5f40ca85f003bbd98aab468498409ce6 https://www.encodeproject.org/files/ENCFF001LRN/@@download/ENCFF001LRN.bam mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF001LRP bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF001LRX 872212359 Bing Ren, UCSD c29e04dc5e490c77dbcf82d54059a1b9 https://www.encodeproject.org/files/ENCFF001LRP/@@download/ENCFF001LRP.bam mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF001LRQ bigWig signal ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 64880373 Bing Ren, UCSD 7bcc61be6934c39a93d75dcf70351551 https://www.encodeproject.org/files/ENCFF001LRQ/@@download/ENCFF001LRQ.bigWig mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF001LRW fastq reads ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 1 36 single-ended 417563407 Bing Ren, UCSD 27d8add215abcec656bc1c4693839ffc https://www.encodeproject.org/files/ENCFF001LRW/@@download/ENCFF001LRW.fastq.gz HiSeq 2000 /files/ENCFF001KXN/ released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF001LRX fastq reads ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 1 36 single-ended 823221182 Bing Ren, UCSD 95cb223c7b394648881cb9f534817b72 https://www.encodeproject.org/files/ENCFF001LRX/@@download/ENCFF001LRX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KXE/ released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF001YBA bed broadPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 239679 Bing Ren, UCSD 729a4f3a2da1ccb20453b309c363be79 https://www.encodeproject.org/files/ENCFF001YBA/@@download/ENCFF001YBA.bed.gz mm9 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF016XYS bam unfiltered alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LRX, ENCFF018NEO 909758866 ENCODE Processing Pipeline ca10c5c2b4255c6e629cd939498b27e4 https://www.encodeproject.org/files/ENCFF016XYS/@@download/ENCFF016XYS.bam mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF256SXG bam unfiltered alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LRW, ENCFF018NEO 452265484 ENCODE Processing Pipeline 74d018c586254a7b4afdff835d54e5d1 https://www.encodeproject.org/files/ENCFF256SXG/@@download/ENCFF256SXG.bam mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF616NLO bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LRX, ENCFF018NEO 523847669 ENCODE Processing Pipeline 0d24fd5a9f513c7d8b136e94e568710a https://www.encodeproject.org/files/ENCFF616NLO/@@download/ENCFF616NLO.bam mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, control low read depth, insufficient replicate concordance ENCFF752ONZ bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LRW, ENCFF018NEO 225050731 ENCODE Processing Pipeline 0d055c08c8bffff597817541925cf0a6 https://www.encodeproject.org/files/ENCFF752ONZ/@@download/ENCFF752ONZ.bam mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance, control low read depth ENCFF946MNK bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 247426860 ENCODE Processing Pipeline 976e0bf6b85757c12a9a2f470d623ee6 https://www.encodeproject.org/files/ENCFF946MNK/@@download/ENCFF946MNK.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF334UXG bed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 4120219 ENCODE Processing Pipeline 79d0ec6ec0d0c6054d586fd28167c10f https://www.encodeproject.org/files/ENCFF334UXG/@@download/ENCFF334UXG.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF901PPE bed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 3930317 ENCODE Processing Pipeline 36b9b5be926e3d901a9a6423f3ee4e3c https://www.encodeproject.org/files/ENCFF901PPE/@@download/ENCFF901PPE.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF373NZZ bigBed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF334UXG 9984903 ENCODE Processing Pipeline aa6836a99179567cf46724a9b7ed03d5 https://www.encodeproject.org/files/ENCFF373NZZ/@@download/ENCFF373NZZ.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF368ISS bigBed narrowPeak conservative idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF972QLS 326849 ENCODE Processing Pipeline a564038ea3aff528231d47a64dbf3fe4 https://www.encodeproject.org/files/ENCFF368ISS/@@download/ENCFF368ISS.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF334ZCC bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 170324960 ENCODE Processing Pipeline f37228c7a91f8fe5155496cea7de4240 https://www.encodeproject.org/files/ENCFF334ZCC/@@download/ENCFF334ZCC.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF244AZR bigBed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF502SKJ 10482209 ENCODE Processing Pipeline 4c329459fede756796b9bb4e32d5284c https://www.encodeproject.org/files/ENCFF244AZR/@@download/ENCFF244AZR.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF074WOC bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 209740151 ENCODE Processing Pipeline 4fa9a53171fe5dd454fa805f5e4f10f7 https://www.encodeproject.org/files/ENCFF074WOC/@@download/ENCFF074WOC.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF764GMG bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF288QPC, ENCFF752ONZ, ENCFF942MHC 107215420 ENCODE Processing Pipeline 40f22049c8ead83836f29fc04a71422c https://www.encodeproject.org/files/ENCFF764GMG/@@download/ENCFF764GMG.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF142CFK bigWig signal p-value ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 198623865 ENCODE Processing Pipeline 754ed5dd277c12c09f3031d461b533dd https://www.encodeproject.org/files/ENCFF142CFK/@@download/ENCFF142CFK.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF596YYI bigWig fold change over control ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1 ENCFF288QPC, ENCFF616NLO, ENCFF942MHC 171510604 ENCODE Processing Pipeline 854ab94913aff7939e40341d59059fd4 https://www.encodeproject.org/files/ENCFF596YYI/@@download/ENCFF596YYI.bigWig mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF502SKJ bed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF288QPC, ENCFF616NLO, ENCFF752ONZ, ENCFF942MHC 4513963 ENCODE Processing Pipeline acea9986f196080df2b9eb770ac6c266 https://www.encodeproject.org/files/ENCFF502SKJ/@@download/ENCFF502SKJ.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF862SJD bigBed narrowPeak peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 2 ENCFF901PPE 9301062 ENCODE Processing Pipeline 0f67a609f951232a90151665ce4e2b27 https://www.encodeproject.org/files/ENCFF862SJD/@@download/ENCFF862SJD.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF972QLS bed narrowPeak conservative idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF334UXG, ENCFF502SKJ, ENCFF547MET, ENCFF901PPE 176829 ENCODE Processing Pipeline d8bfbba97bc8720a4b27b2801b4270f1 https://www.encodeproject.org/files/ENCFF972QLS/@@download/ENCFF972QLS.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF443TPY bed narrowPeak optimal idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF334UXG, ENCFF502SKJ, ENCFF547MET, ENCFF901PPE 396257 ENCODE Processing Pipeline 632e5b2a4adf5b126946abb51f5ce210 https://www.encodeproject.org/files/ENCFF443TPY/@@download/ENCFF443TPY.bed.gz mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF316XOB bigBed narrowPeak optimal idr thresholded peaks ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2012-04-13 ENCODE 1, 2 ENCFF443TPY 738022 ENCODE Processing Pipeline eaf01e7b5d4eb85a367d7aaee79cb978 https://www.encodeproject.org/files/ENCFF316XOB/@@download/ENCFF316XOB.bigBed mm10 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth, insufficient replicate concordance ENCFF001LFR bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LGI 1153612473 Bing Ren, UCSD 19a4854564b4635c461d2cc16ca10647 https://www.encodeproject.org/files/ENCFF001LFR/@@download/ENCFF001LFR.bam mm9 released low read length missing unfiltered alignments insufficient read depth ENCFF001LFT bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LGH 647718774 Bing Ren, UCSD 45e9ad14f48a4e3dfb9a2f436dc75020 https://www.encodeproject.org/files/ENCFF001LFT/@@download/ENCFF001LFT.bam mm9 released low read length missing unfiltered alignments insufficient read depth ENCFF001LFU bigBed broadPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001XZU 327446 Bing Ren, UCSD 3a48a7020107030b45bad7dc5ad15a9c https://www.encodeproject.org/files/ENCFF001LFU/@@download/ENCFF001LFU.bigBed mm9 released low read length missing unfiltered alignments insufficient read depth ENCFF001LFX bigWig signal ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 65418960 Bing Ren, UCSD 44feda014accb86f7ed7ec4bbcfce12e https://www.encodeproject.org/files/ENCFF001LFX/@@download/ENCFF001LFX.bigWig mm9 released low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF001LGH fastq reads ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 741545851 Bing Ren, UCSD 183aa93675447d7779c373e1da2378c7 https://www.encodeproject.org/files/ENCFF001LGH/@@download/ENCFF001LGH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYM/ released low read length missing unfiltered alignments insufficient read depth ENCFF001LGI fastq reads ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 1453014793 Bing Ren, UCSD 62dd21da575725327cd70ede798149c9 https://www.encodeproject.org/files/ENCFF001LGI/@@download/ENCFF001LGI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001JYN/ released low read length missing unfiltered alignments insufficient read depth ENCFF001XZU bed broadPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 207159 Bing Ren, UCSD 747b18f3bbdfce90f8810790392ab410 https://www.encodeproject.org/files/ENCFF001XZU/@@download/ENCFF001XZU.bed.gz mm9 released low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF911ZCR bam unfiltered alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGH, ENCFF018NEO 823865506 ENCODE Processing Pipeline cf25cb18a14b34ad12ec6802fd1a8b8b https://www.encodeproject.org/files/ENCFF911ZCR/@@download/ENCFF911ZCR.bam mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF891BRQ bam unfiltered alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGI, ENCFF018NEO 1642049188 ENCODE Processing Pipeline 4718b049e13e3bd6c066d8dfa4eaa7f8 https://www.encodeproject.org/files/ENCFF891BRQ/@@download/ENCFF891BRQ.bam mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF671WIS bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGH, ENCFF018NEO 400255827 ENCODE Processing Pipeline 00c98166791f20d9cde0244725fec6a4 https://www.encodeproject.org/files/ENCFF671WIS/@@download/ENCFF671WIS.bam mm10 released low read length missing unfiltered alignments insufficient read depth, control low read depth ENCFF977LTN bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGI, ENCFF018NEO 976371376 ENCODE Processing Pipeline 87c806fad99da0a5dde553c0806efa8c https://www.encodeproject.org/files/ENCFF977LTN/@@download/ENCFF977LTN.bam mm10 released low read length missing unfiltered alignments insufficient read depth, control low read depth ENCFF459NZX bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 363577944 ENCODE Processing Pipeline d0d956307532b52b32b4dcac7b3eb80e https://www.encodeproject.org/files/ENCFF459NZX/@@download/ENCFF459NZX.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF872MDP bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 353898980 ENCODE Processing Pipeline 037d07b997bb28a9d7a833317abae16d https://www.encodeproject.org/files/ENCFF872MDP/@@download/ENCFF872MDP.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF900XVJ bed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 2525666 ENCODE Processing Pipeline 3b0f2b2c8d4f9a88abafa9e25d507f8a https://www.encodeproject.org/files/ENCFF900XVJ/@@download/ENCFF900XVJ.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF211XET bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 125688667 ENCODE Processing Pipeline bbd03a1418a84503c5f6f84a9b5cd9d6 https://www.encodeproject.org/files/ENCFF211XET/@@download/ENCFF211XET.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF156BYW bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 448661830 ENCODE Processing Pipeline a9737317a0975431275563231ddbc73c https://www.encodeproject.org/files/ENCFF156BYW/@@download/ENCFF156BYW.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF846ENI bed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 4558545 ENCODE Processing Pipeline 79c109b69a401b2397c280c9a0c4232a https://www.encodeproject.org/files/ENCFF846ENI/@@download/ENCFF846ENI.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF964XDN bigWig signal p-value ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF543ZVH, ENCFF671WIS 156411747 ENCODE Processing Pipeline 3b414c61b14bf9670f89b06163917a7c https://www.encodeproject.org/files/ENCFF964XDN/@@download/ENCFF964XDN.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF708MJD bigWig fold change over control ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF249NVZ, ENCFF543ZVH, ENCFF977LTN 352260374 ENCODE Processing Pipeline 62123e1262392c6287ecad570d7527a4 https://www.encodeproject.org/files/ENCFF708MJD/@@download/ENCFF708MJD.bigWig mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF452OAE bigBed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF900XVJ 5373960 ENCODE Processing Pipeline fbb199f9746658569a0d2d83ed99a87e https://www.encodeproject.org/files/ENCFF452OAE/@@download/ENCFF452OAE.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF938YDD bed narrowPeak conservative idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF774XDZ, ENCFF846ENI, ENCFF900XVJ 403801 ENCODE Processing Pipeline 11735e6d07bde5d9136a8cefc729dae3 https://www.encodeproject.org/files/ENCFF938YDD/@@download/ENCFF938YDD.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF929VCS bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF938YDD 772584 ENCODE Processing Pipeline 0395ecc0d165f122db1419f408594ebb https://www.encodeproject.org/files/ENCFF929VCS/@@download/ENCFF929VCS.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF774XDZ bed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF249NVZ, ENCFF543ZVH, ENCFF671WIS, ENCFF977LTN 4969323 ENCODE Processing Pipeline 0d0b75976b8190930d366d7494b4081d https://www.encodeproject.org/files/ENCFF774XDZ/@@download/ENCFF774XDZ.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF913KKV bigBed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF774XDZ 11194827 ENCODE Processing Pipeline 2b1cad6cfd64fa229222770ace26bfe0 https://www.encodeproject.org/files/ENCFF913KKV/@@download/ENCFF913KKV.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF806PDR bed narrowPeak optimal idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF547MET, ENCFF774XDZ, ENCFF846ENI, ENCFF900XVJ 449965 ENCODE Processing Pipeline ea223ed654bbe195a05dedec31ac60cc https://www.encodeproject.org/files/ENCFF806PDR/@@download/ENCFF806PDR.bed.gz mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF535NUV bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF806PDR 837851 ENCODE Processing Pipeline 507e685ec82fbfb864d565ad591367b4 https://www.encodeproject.org/files/ENCFF535NUV/@@download/ENCFF535NUV.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF549UWI bigBed narrowPeak peaks ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue adult male 8 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF846ENI 10720309 ENCODE Processing Pipeline 54c5da06f301f1f768501f6cec7c6b9b https://www.encodeproject.org/files/ENCFF549UWI/@@download/ENCFF549UWI.bigBed mm10 released low read length missing unfiltered alignments insufficient read depth ENCFF001LNZ bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF001LOK 565056127 Bing Ren, UCSD 11590909d37bc04e7d10f3ac35a07545 https://www.encodeproject.org/files/ENCFF001LNZ/@@download/ENCFF001LNZ.bam mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LOA bigBed broadPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE ENCFF001YAQ 909952 Bing Ren, UCSD fc925ec66dbbfef804d8fde8053bd395 https://www.encodeproject.org/files/ENCFF001LOA/@@download/ENCFF001LOA.bigBed mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LOB bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF001LOI 561608618 Bing Ren, UCSD b9e5c8f63ea7b618e632b60984a2be3d https://www.encodeproject.org/files/ENCFF001LOB/@@download/ENCFF001LOB.bam mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LOD bigWig signal ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 59512875 Bing Ren, UCSD d5d814db5fdea317e9ff40f270ba122b https://www.encodeproject.org/files/ENCFF001LOD/@@download/ENCFF001LOD.bigWig mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF001LOI fastq reads ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 1 36 single-ended 649652575 Bing Ren, UCSD cb88968f80b51bba208252174b3b589e https://www.encodeproject.org/files/ENCFF001LOI/@@download/ENCFF001LOI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPS/ released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001LOK fastq reads ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 1 36 single-ended 905969306 Bing Ren, UCSD 34e72055a6a1a355cad06ab2d83480b7 https://www.encodeproject.org/files/ENCFF001LOK/@@download/ENCFF001LOK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001KPR/ released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF001YAQ bed broadPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 551538 Bing Ren, UCSD 4dac8569e3d3ebb4e19f36ab633d10dc https://www.encodeproject.org/files/ENCFF001YAQ/@@download/ENCFF001YAQ.bed.gz mm9 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF142CEK bam unfiltered alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOI, ENCFF018NEO 707035481 ENCODE Processing Pipeline 0783a344e320c60d367ad5ceed01dedc https://www.encodeproject.org/files/ENCFF142CEK/@@download/ENCFF142CEK.bam mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF564ZUE bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOI, ENCFF018NEO 250447605 ENCODE Processing Pipeline d36a0e2f8a43c21b3fd3ff706d871243 https://www.encodeproject.org/files/ENCFF564ZUE/@@download/ENCFF564ZUE.bam mm10 released mild to moderate bottlenecking, moderate library complexity, borderline replicate concordance, control low read depth, low read length missing unfiltered alignments insufficient read depth ENCFF766YMS bam unfiltered alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOK, ENCFF018NEO 928976207 ENCODE Processing Pipeline fe8c2545a5c3848464a6745f6ca644ea https://www.encodeproject.org/files/ENCFF766YMS/@@download/ENCFF766YMS.bam mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF464NFI bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOK, ENCFF018NEO 267730430 ENCODE Processing Pipeline c0854275972f38d9223651eb1abe5fa7 https://www.encodeproject.org/files/ENCFF464NFI/@@download/ENCFF464NFI.bam mm10 released control low read depth, moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF894SWO bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 278513438 ENCODE Processing Pipeline feb45c62e63aa32260eeeeb2f0137dca https://www.encodeproject.org/files/ENCFF894SWO/@@download/ENCFF894SWO.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF700VXC bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 284687072 ENCODE Processing Pipeline 8928c9db676472006c23e2fa966223ca https://www.encodeproject.org/files/ENCFF700VXC/@@download/ENCFF700VXC.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF843IPI bigWig signal p-value ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 480252840 ENCODE Processing Pipeline 3792f8964fb5677fc69eb2f28ca3c373 https://www.encodeproject.org/files/ENCFF843IPI/@@download/ENCFF843IPI.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF728YFM bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 107190297 ENCODE Processing Pipeline 79f0aaf0225d124397ebcb4a2753efbc https://www.encodeproject.org/files/ENCFF728YFM/@@download/ENCFF728YFM.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF929APL bed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 1781061 ENCODE Processing Pipeline 1732037d3ed7ba99200276248d57486a https://www.encodeproject.org/files/ENCFF929APL/@@download/ENCFF929APL.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF507FHH bed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 4624462 ENCODE Processing Pipeline c284a35dbfc8f1a27f6aebf609441a9e https://www.encodeproject.org/files/ENCFF507FHH/@@download/ENCFF507FHH.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF959ZMQ bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF545AEW, ENCFF564ZUE 118504034 ENCODE Processing Pipeline 610618a010540066f8d1ccdd5ce553da https://www.encodeproject.org/files/ENCFF959ZMQ/@@download/ENCFF959ZMQ.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF508GAH bed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF161DPJ, ENCFF464NFI 2628091 ENCODE Processing Pipeline 588dcae8b8a099763bc52c5f7fde1d56 https://www.encodeproject.org/files/ENCFF508GAH/@@download/ENCFF508GAH.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF432JCZ bigWig fold change over control ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF161DPJ, ENCFF464NFI, ENCFF545AEW, ENCFF564ZUE 269976331 ENCODE Processing Pipeline eaa3153f733ccaf34e23b8f96f0841ef https://www.encodeproject.org/files/ENCFF432JCZ/@@download/ENCFF432JCZ.bigWig mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF819GAZ bigBed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 2 ENCFF929APL 3870246 ENCODE Processing Pipeline 6c42293308705144b0100ee599cff8aa https://www.encodeproject.org/files/ENCFF819GAZ/@@download/ENCFF819GAZ.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF989CFR bigBed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH 11201788 ENCODE Processing Pipeline e330bc04da602025caf2736646013971 https://www.encodeproject.org/files/ENCFF989CFR/@@download/ENCFF989CFR.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF551CDR bigBed narrowPeak peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1 ENCFF508GAH 5773014 ENCODE Processing Pipeline fcac4664542d2c59865fe372d15207f1 https://www.encodeproject.org/files/ENCFF551CDR/@@download/ENCFF551CDR.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF549BWV bigBed narrowPeak conservative idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF940SWY 472750 ENCODE Processing Pipeline a895b765542d5740e8d728714620ccf4 https://www.encodeproject.org/files/ENCFF549BWV/@@download/ENCFF549BWV.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF100YLI bed narrowPeak optimal idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH, ENCFF508GAH, ENCFF547MET, ENCFF929APL 345379 ENCODE Processing Pipeline 20bcde137a04241c61036572d6657bf7 https://www.encodeproject.org/files/ENCFF100YLI/@@download/ENCFF100YLI.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF551CRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF100YLI 580367 ENCODE Processing Pipeline f7face1856a342cabe651dd90b2c0e87 https://www.encodeproject.org/files/ENCFF551CRD/@@download/ENCFF551CRD.bigBed mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF940SWY bed narrowPeak conservative idr thresholded peaks ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell embryonic male 13.5 week Mus musculus CTCF-mouse ENCAB210NHK DNA see document see document False 2011-07-22 ENCODE 1, 2 ENCFF507FHH, ENCFF508GAH, ENCFF547MET, ENCFF929APL 263244 ENCODE Processing Pipeline 42888e9ad50c71031e414167a80f9724 https://www.encodeproject.org/files/ENCFF940SWY/@@download/ENCFF940SWY.bed.gz mm10 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF538QDO fastq reads ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 1 50 single-ended 1221837046 Richard Myers, HAIB f1d4eaf0677dcf81cdfac526e10db8dc SRA:SRR5111961 https://www.encodeproject.org/files/ENCFF538QDO/@@download/ENCFF538QDO.fastq.gz HiSeq 2000 /files/ENCFF184PEP/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF712ARW fastq reads ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 1 50 single-ended 1068880582 Richard Myers, HAIB ba2d0bdce5ab479324301da227ab8e76 SRA:SRR5111960 https://www.encodeproject.org/files/ENCFF712ARW/@@download/ENCFF712ARW.fastq.gz HiSeq 2000 /files/ENCFF184PEP/ released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF251BAO bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF712ARW, ENCFF806TVZ 827138671 ENCODE Processing Pipeline aa48a9e02319815fba762d8d3d2a7d91 https://www.encodeproject.org/files/ENCFF251BAO/@@download/ENCFF251BAO.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF485SVS bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF538QDO, ENCFF806TVZ 933051317 ENCODE Processing Pipeline eb6cbc055aca8200b47cff2592eedb82 https://www.encodeproject.org/files/ENCFF485SVS/@@download/ENCFF485SVS.bam mm10-minimal archived antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF348JLT bam unfiltered alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF712ARW 1082674981 ENCODE Processing Pipeline af42db1e6b64a70d1e2f357280167537 https://www.encodeproject.org/files/ENCFF348JLT/@@download/ENCFF348JLT.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF643YLR bam unfiltered alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF538QDO 1229898234 ENCODE Processing Pipeline e07a2e164a8d9d7caa092399a15e73af https://www.encodeproject.org/files/ENCFF643YLR/@@download/ENCFF643YLR.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF624WZX bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF712ARW 827048225 ENCODE Processing Pipeline 4984abc24d5bbb7abbc426b59c8aa4b5 https://www.encodeproject.org/files/ENCFF624WZX/@@download/ENCFF624WZX.bam mm10 released antibody characterized with exemption, low read depth, control low read depth NTR biosample, biological replicates with identical biosample ENCFF049QHC bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF538QDO 932950273 ENCODE Processing Pipeline 58bf61d6d3703e7ac42ee16f63afb549 https://www.encodeproject.org/files/ENCFF049QHC/@@download/ENCFF049QHC.bam mm10 released antibody characterized with exemption, low read depth, control low read depth NTR biosample, biological replicates with identical biosample ENCFF966STN bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 313041507 ENCODE Processing Pipeline fca8ddf716c6342f216d198a0b0c0029 https://www.encodeproject.org/files/ENCFF966STN/@@download/ENCFF966STN.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF594EQD bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 300878538 ENCODE Processing Pipeline 2261356b222422e93a11556498a4affb https://www.encodeproject.org/files/ENCFF594EQD/@@download/ENCFF594EQD.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF323HFE bigWig signal p-value ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 347013431 ENCODE Processing Pipeline 47075111948a064cf7bee6eac82ed186 https://www.encodeproject.org/files/ENCFF323HFE/@@download/ENCFF323HFE.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF504WKO bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 255742046 ENCODE Processing Pipeline c49507ebade6408a7da530ebd7b865b5 https://www.encodeproject.org/files/ENCFF504WKO/@@download/ENCFF504WKO.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF045CCN bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 289463101 ENCODE Processing Pipeline e67eb75db6ff075d1900f10c465c552a https://www.encodeproject.org/files/ENCFF045CCN/@@download/ENCFF045CCN.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF291KIP bigBed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF857UVO 10531855 ENCODE Processing Pipeline f430169be3c72eba84d1762038566050 https://www.encodeproject.org/files/ENCFF291KIP/@@download/ENCFF291KIP.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF580LNR bed narrowPeak optimal idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF547MET, ENCFF720THG, ENCFF779QUY, ENCFF857UVO 894734 ENCODE Processing Pipeline 64bff7c334186c4ebe0fabf64abaf7d2 https://www.encodeproject.org/files/ENCFF580LNR/@@download/ENCFF580LNR.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF779QUY bed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 5589204 ENCODE Processing Pipeline aaf78d15e7219a802b8716701ecf6632 https://www.encodeproject.org/files/ENCFF779QUY/@@download/ENCFF779QUY.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF495KVA bigBed narrowPeak conservative idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF354TDS 1403537 ENCODE Processing Pipeline 826dd1931ac7d611c37e81d77ceecef7 https://www.encodeproject.org/files/ENCFF495KVA/@@download/ENCFF495KVA.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF857UVO bed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 2 ENCFF135EEH, ENCFF624WZX 4574680 ENCODE Processing Pipeline a4451cef81223dd21996d113f3ce6452 https://www.encodeproject.org/files/ENCFF857UVO/@@download/ENCFF857UVO.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF500SSQ bigWig fold change over control ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF049QHC, ENCFF135EEH, ENCFF624WZX 469213712 ENCODE Processing Pipeline d9838d670905ead714ed6bf719f898bc https://www.encodeproject.org/files/ENCFF500SSQ/@@download/ENCFF500SSQ.bigWig mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF720THG bed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF049QHC, ENCFF135EEH 4970259 ENCODE Processing Pipeline 6bc30ede0e6cba95a1e81c78df7f4df7 https://www.encodeproject.org/files/ENCFF720THG/@@download/ENCFF720THG.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF627ZBY bigBed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1 ENCFF720THG 10834297 ENCODE Processing Pipeline 7fcc4aefdac571f9c0c235716478b3a8 https://www.encodeproject.org/files/ENCFF627ZBY/@@download/ENCFF627ZBY.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF858LGA bigBed narrowPeak peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF779QUY 11181818 ENCODE Processing Pipeline 34faa343b9120b8e3bcf5d3177808868 https://www.encodeproject.org/files/ENCFF858LGA/@@download/ENCFF858LGA.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF923TYN bigBed narrowPeak optimal idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF580LNR 1436057 ENCODE Processing Pipeline 1e0d7d7a809922bdab8b26f54b103795 https://www.encodeproject.org/files/ENCFF923TYN/@@download/ENCFF923TYN.bigBed mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF354TDS bed narrowPeak conservative idr thresholded peaks ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue postnatal unknown 0 day Mus musculus CTCF-mouse ENCAB247TYO DNA False 2016-05-18 ENCODE 1, 2 ENCFF547MET, ENCFF720THG, ENCFF779QUY, ENCFF857UVO 867864 ENCODE Processing Pipeline 3e5ce794a910ead95ee9159a9d7049c9 https://www.encodeproject.org/files/ENCFF354TDS/@@download/ENCFF354TDS.bed.gz mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample