File accession File format Output type Experiment accession Assay Biosample term id Biosample term name Biosample type Biosample life stage Biosample sex Biosample Age Biosample organism Biosample treatments Biosample subcellular fraction term name Biosample phase Biosample synchronization stage Experiment target Antibody accession Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate Read length Mapped read length Run type Paired end Paired with Derived from Size Lab md5sum dbxrefs File download URL Assembly Platform Controlled by File Status Audit WARNING Audit INTERNAL_ACTION Audit NOT_COMPLIANT Audit ERROR ENCFF001XQT bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMJ 1160101 John Stamatoyannopoulos, UW 8e75d4cdb45b6964f189224cec21cb70 https://www.encodeproject.org/files/ENCFF001XQT/@@download/ENCFF001XQT.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF001XQU bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HMN 589612 John Stamatoyannopoulos, UW 689e2aab8c5f9cd690e2e38010bedccf https://www.encodeproject.org/files/ENCFF001XQU/@@download/ENCFF001XQU.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF002DCV bed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HMJ, ENCFF001HMN 1062592 ENCODE Consortium Analysis Working Group 7a84af76cdca6859dbcbdea72982e5a2 https://www.encodeproject.org/files/ENCFF002DCV/@@download/ENCFF002DCV.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF233WWI bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF594YMC, ENCFF846BEG 3462678 ENCODE Processing Pipeline 7859fe1e2b3757fd6204a9ec8b779211 https://www.encodeproject.org/files/ENCFF233WWI/@@download/ENCFF233WWI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF320NTE bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF018VMV, ENCFF846BEG 1740254 ENCODE Processing Pipeline d7218455cd883cb72867d5879dd36d3e https://www.encodeproject.org/files/ENCFF320NTE/@@download/ENCFF320NTE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF338RAX bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF018VMV, ENCFF594YMC, ENCFF846BEG 4685995 ENCODE Processing Pipeline bc4754552a106067a30aad1e757be3eb https://www.encodeproject.org/files/ENCFF338RAX/@@download/ENCFF338RAX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF314ZAL bed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF233WWI, ENCFF320NTE, ENCFF338RAX, ENCFF419RSJ 861845 ENCODE Processing Pipeline 0937afc2b34f11b61c7e24442a9133e0 https://www.encodeproject.org/files/ENCFF314ZAL/@@download/ENCFF314ZAL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF008LSM bed narrowPeak conservative idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF233WWI, ENCFF320NTE, ENCFF338RAX, ENCFF419RSJ 725062 ENCODE Processing Pipeline 5b198440342d7e0f598c7a2a66e5b992 https://www.encodeproject.org/files/ENCFF008LSM/@@download/ENCFF008LSM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF425BCQ bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF020GGX, ENCFF986XGP 3434760 ENCODE Processing Pipeline 10a066425c1f4c4901f1e63c66a31b81 https://www.encodeproject.org/files/ENCFF425BCQ/@@download/ENCFF425BCQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF326OIK bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF020GGX, ENCFF852CZT, ENCFF986XGP 4682592 ENCODE Processing Pipeline 49c2c5cc939029cc39610441ca300fc4 https://www.encodeproject.org/files/ENCFF326OIK/@@download/ENCFF326OIK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF154FAT bed narrowPeak conservative idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF035ZLA, ENCFF326OIK, ENCFF425BCQ 725649 ENCODE Processing Pipeline e953d069acf305d04d35ba5348c017a1 https://www.encodeproject.org/files/ENCFF154FAT/@@download/ENCFF154FAT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF035ZLA bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF852CZT, ENCFF986XGP 1729204 ENCODE Processing Pipeline 8dcb9fb047554a27bc9fe53c14fbd6d3 https://www.encodeproject.org/files/ENCFF035ZLA/@@download/ENCFF035ZLA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF328FUO bed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF035ZLA, ENCFF326OIK, ENCFF425BCQ 861513 ENCODE Processing Pipeline 46f300b41d4198e9056638c44cfce2fe https://www.encodeproject.org/files/ENCFF328FUO/@@download/ENCFF328FUO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read length, inconsistent platforms, low read depth, moderate library complexity insufficient read depth ENCFF001USS bed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1513785 Vishwanath Iyer, UTA f184dbeabc74f58f3dcf39b997556962 https://www.encodeproject.org/files/ENCFF001USS/@@download/ENCFF001USS.bed.gz hg19 archived low read length missing derived_from insufficient read depth ENCFF002DAR bed narrowPeak optimal idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 775431 ENCODE Consortium Analysis Working Group 94d260bfb6b2aa8ab39d8332381857b5 https://www.encodeproject.org/files/ENCFF002DAR/@@download/ENCFF002DAR.bed.gz hg19 archived low read length missing derived_from insufficient read depth ENCFF671XDX bed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF135DRQ, ENCFF381ASB 1263822 ENCODE Processing Pipeline 278c0c31cc9348bb3ff229043d8826c9 https://www.encodeproject.org/files/ENCFF671XDX/@@download/ENCFF671XDX.bed.gz GRCh38 released low read length insufficient read depth ENCFF559TGJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419RSJ, ENCFF671XDX 534248 ENCODE Processing Pipeline e8d4a1b789a559e8a91a64c63aea5985 https://www.encodeproject.org/files/ENCFF559TGJ/@@download/ENCFF559TGJ.bed.gz GRCh38 released low read length insufficient read depth ENCFF803HUJ bed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF325QRE 1318856 ENCODE Processing Pipeline 8f5bf2f5b92b134ef4645a547364f639 https://www.encodeproject.org/files/ENCFF803HUJ/@@download/ENCFF803HUJ.bed.gz hg19 released low read length insufficient read depth ENCFF236WLA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF803HUJ 553567 ENCODE Processing Pipeline 3cf3e8ff408a019f2f03c6e1ba7f7678 https://www.encodeproject.org/files/ENCFF236WLA/@@download/ENCFF236WLA.bed.gz hg19 released low read length insufficient read depth ENCFF001XMP bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GYW 946180 John Stamatoyannopoulos, UW cc1455d47dca75372ae98ed04074df75 https://www.encodeproject.org/files/ENCFF001XMP/@@download/ENCFF001XMP.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF001XMQ bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GZC 764324 John Stamatoyannopoulos, UW 9cd9622b1e96e405420eac8b55cb3556 https://www.encodeproject.org/files/ENCFF001XMQ/@@download/ENCFF001XMQ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF002DCB bed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001GYW, ENCFF001GZC 1096428 ENCODE Consortium Analysis Working Group 200533e7cc808f8521c4b2cbdc0ac122 https://www.encodeproject.org/files/ENCFF002DCB/@@download/ENCFF002DCB.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF082FUL bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF054LVG, ENCFF170UJD, ENCFF921SZK 5141963 ENCODE Processing Pipeline 86af700590ca5dd3417387ce4eb1afb6 https://www.encodeproject.org/files/ENCFF082FUL/@@download/ENCFF082FUL.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF965BBC bed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF082FUL, ENCFF535IOO, ENCFF863FFV 905006 ENCODE Processing Pipeline b391745a29366760d1126d5c58fd8512 https://www.encodeproject.org/files/ENCFF965BBC/@@download/ENCFF965BBC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF863FFV bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF054LVG, ENCFF170UJD 4585271 ENCODE Processing Pipeline 267dfc560c68f89a60b9602a08a0dd5c https://www.encodeproject.org/files/ENCFF863FFV/@@download/ENCFF863FFV.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF535IOO bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF054LVG, ENCFF921SZK 4745354 ENCODE Processing Pipeline fc5ee30bf6e6b762349c3f3a9fca85d5 https://www.encodeproject.org/files/ENCFF535IOO/@@download/ENCFF535IOO.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF351UFJ bed narrowPeak conservative idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF082FUL, ENCFF535IOO, ENCFF863FFV 841514 ENCODE Processing Pipeline 73001f44e461c5256632666577e6b901 https://www.encodeproject.org/files/ENCFF351UFJ/@@download/ENCFF351UFJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF826XZW bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF540GSY, ENCFF654KYF, ENCFF824XFI 5162733 ENCODE Processing Pipeline 061a75dbb739b1b6466b7b0c23ae27ae https://www.encodeproject.org/files/ENCFF826XZW/@@download/ENCFF826XZW.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF252QZC bed narrowPeak conservative idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF376MMA, ENCFF419RSJ, ENCFF782ULZ, ENCFF826XZW 848133 ENCODE Processing Pipeline 2c9c8e4ea5aa48ff6a8091759ed28b1a https://www.encodeproject.org/files/ENCFF252QZC/@@download/ENCFF252QZC.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF782ULZ bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF540GSY, ENCFF824XFI 4585799 ENCODE Processing Pipeline 2fece1902570732b272c07944793a708 https://www.encodeproject.org/files/ENCFF782ULZ/@@download/ENCFF782ULZ.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF376MMA bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF540GSY, ENCFF654KYF 4757841 ENCODE Processing Pipeline 844e6c6375a57ad733bc519ddf0c6e5c https://www.encodeproject.org/files/ENCFF376MMA/@@download/ENCFF376MMA.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF594OZI bed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF376MMA, ENCFF419RSJ, ENCFF782ULZ, ENCFF826XZW 910571 ENCODE Processing Pipeline d95d4cd6d689eebb233b7b52a4a0c00f https://www.encodeproject.org/files/ENCFF594OZI/@@download/ENCFF594OZI.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF973PXA bed narrowPeak peaks ENCSR173IEA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF018IPS, ENCFF153YTX 598886 Tim Reddy, Duke 4022489513267a125b0e1c8d1d728f47 https://www.encodeproject.org/files/ENCFF973PXA/@@download/ENCFF973PXA.bed.gz GRCh38 released ENCFF926VCR bed narrowPeak peaks ENCSR173IEA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 3 1 ENCFF393MLY, ENCFF782EQG 721110 Tim Reddy, Duke 42720d353cab574c8e0418020fb331e8 https://www.encodeproject.org/files/ENCFF926VCR/@@download/ENCFF926VCR.bed.gz GRCh38 released ENCFF001XTN bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HWB 913323 John Stamatoyannopoulos, UW 01fa7d32e0dfdf68296abaa7bd841c06 https://www.encodeproject.org/files/ENCFF001XTN/@@download/ENCFF001XTN.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF001XTO bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HWC 777958 John Stamatoyannopoulos, UW 7b0383c6a7fa3159890f4a4d93fa8d93 https://www.encodeproject.org/files/ENCFF001XTO/@@download/ENCFF001XTO.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF002DDP bed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HWB, ENCFF001HWC 1158472 ENCODE Consortium Analysis Working Group 523f053e43d5ec00ebc98b367ea08e54 https://www.encodeproject.org/files/ENCFF002DDP/@@download/ENCFF002DDP.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF297PJW bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF693QLZ, ENCFF870RFE 4522640 ENCODE Processing Pipeline de5b2e9972c0bcf46a5f2e8a3c93605f https://www.encodeproject.org/files/ENCFF297PJW/@@download/ENCFF297PJW.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF932EHP bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF033MWR, ENCFF693QLZ, ENCFF870RFE 5096229 ENCODE Processing Pipeline 95d26b63474a24e86364a24d73f07ff3 https://www.encodeproject.org/files/ENCFF932EHP/@@download/ENCFF932EHP.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF390JNR bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF033MWR, ENCFF870RFE 4636053 ENCODE Processing Pipeline cc45cf97433bdc1624b95d1588103f85 https://www.encodeproject.org/files/ENCFF390JNR/@@download/ENCFF390JNR.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF192UQS bed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF297PJW, ENCFF390JNR, ENCFF419RSJ, ENCFF932EHP 972573 ENCODE Processing Pipeline 7b7cd51c6b4a31a40abb6c043c950829 https://www.encodeproject.org/files/ENCFF192UQS/@@download/ENCFF192UQS.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF447AUB bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF296JDR, ENCFF634UTF 4548581 ENCODE Processing Pipeline d36a83fab519ffb7689f6387ce332a72 https://www.encodeproject.org/files/ENCFF447AUB/@@download/ENCFF447AUB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF077RDH bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF329NOM, ENCFF634UTF 4649659 ENCODE Processing Pipeline 8234eef88374edfa741369974e674b23 https://www.encodeproject.org/files/ENCFF077RDH/@@download/ENCFF077RDH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF773EJN bed narrowPeak conservative idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF077RDH, ENCFF447AUB, ENCFF943ZQC 975511 ENCODE Processing Pipeline 0e5f8ebdd6777863dd0c44aeb71347ca https://www.encodeproject.org/files/ENCFF773EJN/@@download/ENCFF773EJN.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF470PNM bed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF077RDH, ENCFF447AUB, ENCFF943ZQC 985515 ENCODE Processing Pipeline a32833a04672558d1873a39e47f77f68 https://www.encodeproject.org/files/ENCFF470PNM/@@download/ENCFF470PNM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF943ZQC bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF296JDR, ENCFF329NOM, ENCFF634UTF 5126916 ENCODE Processing Pipeline c39f56a469485e30dbe09a187cf1fee3 https://www.encodeproject.org/files/ENCFF943ZQC/@@download/ENCFF943ZQC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF002CFJ bed narrowPeak optimal idr thresholded peaks ENCSR000BHV ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 879301 ENCODE Consortium Analysis Working Group de829dde2594ca7db69ebdd4f8343736 https://www.encodeproject.org/files/ENCFF002CFJ/@@download/ENCFF002CFJ.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF001XLV bed narrowPeak peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWJ 794416 John Stamatoyannopoulos, UW 3c6b5bf3eefc28b6bab4ef37916011a1 https://www.encodeproject.org/files/ENCFF001XLV/@@download/ENCFF001XLV.bed.gz hg19 archived inconsistent platforms, low read depth, low read length ENCFF001XLW bed narrowPeak peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWP 686601 John Stamatoyannopoulos, UW 9a73acbd7472db4a7a7a0192a772fcb1 https://www.encodeproject.org/files/ENCFF001XLW/@@download/ENCFF001XLW.bed.gz hg19 archived inconsistent platforms, low read depth, low read length ENCFF002DBW bed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 964836 ENCODE Consortium Analysis Working Group fe0348a4dfcb5662bba851d5850e871a https://www.encodeproject.org/files/ENCFF002DBW/@@download/ENCFF002DBW.bed.gz hg19 archived inconsistent platforms, low read depth, low read length missing derived_from ENCFF442AJX bed narrowPeak peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF402WKZ, ENCFF732CPP 4163156 ENCODE Processing Pipeline 03d1f220403ad59f2ce42d9cd5936fdb https://www.encodeproject.org/files/ENCFF442AJX/@@download/ENCFF442AJX.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF602PDJ bed narrowPeak peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF732CPP, ENCFF811FBC 4277026 ENCODE Processing Pipeline f0d7a263a702ebfb83a4e5837d6f0e89 https://www.encodeproject.org/files/ENCFF602PDJ/@@download/ENCFF602PDJ.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF105QGH bed narrowPeak peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF402WKZ, ENCFF732CPP, ENCFF811FBC 4728021 ENCODE Processing Pipeline f43be0c4f2d417701b592ca07fa933cc https://www.encodeproject.org/files/ENCFF105QGH/@@download/ENCFF105QGH.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF788LNG bed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF105QGH, ENCFF419RSJ, ENCFF442AJX, ENCFF602PDJ 780926 ENCODE Processing Pipeline 7f6723cd4f6db91cb57c8c40b6d5cb6d https://www.encodeproject.org/files/ENCFF788LNG/@@download/ENCFF788LNG.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF121QUN bed narrowPeak peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF316KUR, ENCFF864XXG 4166313 ENCODE Processing Pipeline 52a2e3ee1050673d3f3449527d0d40ad https://www.encodeproject.org/files/ENCFF121QUN/@@download/ENCFF121QUN.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF940KDS bed narrowPeak peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF864XXG, ENCFF873WTQ 4277579 ENCODE Processing Pipeline f0b64264e8de07915ba761ea65af7b29 https://www.encodeproject.org/files/ENCFF940KDS/@@download/ENCFF940KDS.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF709XOM bed narrowPeak peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF316KUR, ENCFF864XXG, ENCFF873WTQ 4721535 ENCODE Processing Pipeline 199d6c8df9f65d17afd45815779c7e95 https://www.encodeproject.org/files/ENCFF709XOM/@@download/ENCFF709XOM.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF138PXI bed narrowPeak conservative idr thresholded peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF121QUN, ENCFF709XOM, ENCFF940KDS 776428 ENCODE Processing Pipeline 3bb688d80bb7d949f778b67c443848b9 https://www.encodeproject.org/files/ENCFF138PXI/@@download/ENCFF138PXI.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF681OWQ bed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq CL:0002553 fibroblast of lung primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF121QUN, ENCFF709XOM, ENCFF940KDS 780687 ENCODE Processing Pipeline 9785a54dd69bb39cb46f95c625e0c1fb https://www.encodeproject.org/files/ENCFF681OWQ/@@download/ENCFF681OWQ.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF002CGH bed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 503330 ENCODE Consortium Analysis Working Group dada712ff792fceffd9d90d3fe249d2d https://www.encodeproject.org/files/ENCFF002CGH/@@download/ENCFF002CGH.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF598COF bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 2 ENCFF100KVY, ENCFF279XQE 4158761 ENCODE Processing Pipeline 988c853ef62ae5c1b99a14b507211924 https://www.encodeproject.org/files/ENCFF598COF/@@download/ENCFF598COF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF305MUT bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF100KVY, ENCFF279XQE, ENCFF477SJG 4572004 ENCODE Processing Pipeline 450792fc7595632f33bf0883e7576e5f https://www.encodeproject.org/files/ENCFF305MUT/@@download/ENCFF305MUT.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF542MFI bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1 ENCFF279XQE, ENCFF477SJG 4000778 ENCODE Processing Pipeline d6e6bfd129d3f8acce8ab9083367880e https://www.encodeproject.org/files/ENCFF542MFI/@@download/ENCFF542MFI.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF296XCF bed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF305MUT, ENCFF542MFI, ENCFF598COF 383004 ENCODE Processing Pipeline c426eb3fba59c258c551f1b9197e8079 https://www.encodeproject.org/files/ENCFF296XCF/@@download/ENCFF296XCF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF297FDK bed narrowPeak conservative idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF305MUT, ENCFF542MFI, ENCFF598COF 375692 ENCODE Processing Pipeline 8a1a7e9f7d68905a1d24878c6f6f1110 https://www.encodeproject.org/files/ENCFF297FDK/@@download/ENCFF297FDK.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF229TMK bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 2 ENCFF016HFH, ENCFF667IDX 4152869 ENCODE Processing Pipeline ae649a9d6d59241f213890eeb7b51664 https://www.encodeproject.org/files/ENCFF229TMK/@@download/ENCFF229TMK.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF379DAN bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF016HFH, ENCFF663MFK, ENCFF667IDX 4553686 ENCODE Processing Pipeline 5688fe449b393c3e3c9963864accea31 https://www.encodeproject.org/files/ENCFF379DAN/@@download/ENCFF379DAN.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF675JJV bed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF229TMK, ENCFF334BVY, ENCFF379DAN, ENCFF419RSJ 376046 ENCODE Processing Pipeline 40ae1ffef08368ab94dc4018e8e74904 https://www.encodeproject.org/files/ENCFF675JJV/@@download/ENCFF675JJV.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF334BVY bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1 ENCFF016HFH, ENCFF663MFK 3996228 ENCODE Processing Pipeline 18f7da30e55e49558d9946971bfa7c92 https://www.encodeproject.org/files/ENCFF334BVY/@@download/ENCFF334BVY.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF899FIQ bed narrowPeak conservative idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa immortalized cell line adult female 39 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF229TMK, ENCFF334BVY, ENCFF379DAN, ENCFF419RSJ 371869 ENCODE Processing Pipeline 83ff94167063cb12ad18bcc4b60bc110 https://www.encodeproject.org/files/ENCFF899FIQ/@@download/ENCFF899FIQ.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF001XOF bed narrowPeak peaks ENCSR000DRJ ChIP-seq EFO:0005342 GM12869 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HDY 725430 John Stamatoyannopoulos, UW a430352f00cc7dce5873f3a2c4f254f0 https://www.encodeproject.org/files/ENCFF001XOF/@@download/ENCFF001XOF.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing possible_controls, insufficient read depth ENCFF001XOG bed narrowPeak peaks ENCSR000DRJ ChIP-seq EFO:0005342 GM12869 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HEE 483730 John Stamatoyannopoulos, UW abdb2e2075838b3c80e7e7f8a56806ec https://www.encodeproject.org/files/ENCFF001XOG/@@download/ENCFF001XOG.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing possible_controls, insufficient read depth ENCFF001XSW bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HTS 1013925 John Stamatoyannopoulos, UW f2e1890897b03a2fd59a60948dbba044 https://www.encodeproject.org/files/ENCFF001XSW/@@download/ENCFF001XSW.bed.gz hg19 archived low read depth, low read length ENCFF001XSY bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HTX 827324 John Stamatoyannopoulos, UW 64a8c89348e3f69b4c3a9fc36cb0da51 https://www.encodeproject.org/files/ENCFF001XSY/@@download/ENCFF001XSY.bed.gz hg19 archived low read depth, low read length ENCFF002DDK bed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HTS, ENCFF001HTX 1232023 ENCODE Consortium Analysis Working Group 8a958f1902ed72574b7f49af0d9af347 https://www.encodeproject.org/files/ENCFF002DDK/@@download/ENCFF002DDK.bed.gz hg19 archived low read depth, low read length ENCFF867BUQ bed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF446GJI, ENCFF610MJM, ENCFF684VRG 997469 ENCODE Processing Pipeline 50416f14bb8ac774b2e0c63019c3c56d https://www.encodeproject.org/files/ENCFF867BUQ/@@download/ENCFF867BUQ.bed.gz GRCh38 released low read depth, low read length ENCFF645FWE bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF340AIJ, ENCFF860VSM 4848814 ENCODE Processing Pipeline c0f9e12349771232e46952409185fd6a https://www.encodeproject.org/files/ENCFF645FWE/@@download/ENCFF645FWE.bed.gz hg19 released low read depth, low read length ENCFF051RIN bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF307AYT, ENCFF340AIJ, ENCFF860VSM 5257505 ENCODE Processing Pipeline b40abbc8c1c047a2ca5462cdb5fce326 https://www.encodeproject.org/files/ENCFF051RIN/@@download/ENCFF051RIN.bed.gz hg19 released low read depth, low read length ENCFF095BZW bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF307AYT, ENCFF340AIJ 4567243 ENCODE Processing Pipeline c79f4c4f32756d7ed9fc5ebc6ba00009 https://www.encodeproject.org/files/ENCFF095BZW/@@download/ENCFF095BZW.bed.gz hg19 released low read depth, low read length ENCFF720OXG bed narrowPeak conservative idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF051RIN, ENCFF095BZW, ENCFF645FWE 955285 ENCODE Processing Pipeline 6b8d089895eaec7731ed6a1685465236 https://www.encodeproject.org/files/ENCFF720OXG/@@download/ENCFF720OXG.bed.gz hg19 released low read depth, low read length ENCFF414FWV bed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF051RIN, ENCFF095BZW, ENCFF645FWE 998849 ENCODE Processing Pipeline d10b4180a11b1153c93ac953d9ea5b6e https://www.encodeproject.org/files/ENCFF414FWV/@@download/ENCFF414FWV.bed.gz hg19 released low read depth, low read length ENCFF684VRG bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF320ZWB, ENCFF822LTQ 4565392 ENCODE Processing Pipeline c2b4a3dfe9baa8da7d9cab5b65032f2a https://www.encodeproject.org/files/ENCFF684VRG/@@download/ENCFF684VRG.bed.gz GRCh38 released low read depth, low read length ENCFF446GJI bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF274JRZ, ENCFF320ZWB, ENCFF822LTQ 5254785 ENCODE Processing Pipeline c2fe148f98f7e46b8d85343499a8b8d4 https://www.encodeproject.org/files/ENCFF446GJI/@@download/ENCFF446GJI.bed.gz GRCh38 released low read depth, low read length ENCFF610MJM bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF274JRZ, ENCFF320ZWB 4847266 ENCODE Processing Pipeline 1a48eed5f657c1815d2c04a361b7df2f https://www.encodeproject.org/files/ENCFF610MJM/@@download/ENCFF610MJM.bed.gz GRCh38 released low read depth, low read length ENCFF071JZI bed narrowPeak conservative idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF446GJI, ENCFF610MJM, ENCFF684VRG 955650 ENCODE Processing Pipeline 1f4687846af7a37a00172152fc5b3bd9 https://www.encodeproject.org/files/ENCFF071JZI/@@download/ENCFF071JZI.bed.gz GRCh38 released low read depth, low read length ENCFF001XOU bed narrowPeak peaks ENCSR000DRN ChIP-seq EFO:0001159 GM12872 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HFJ 874579 John Stamatoyannopoulos, UW ac5420223d19cfdc5419b033524fe2d6 https://www.encodeproject.org/files/ENCFF001XOU/@@download/ENCFF001XOU.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XOR bed narrowPeak peaks ENCSR000DRN ChIP-seq EFO:0001159 GM12872 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HFC 741524 John Stamatoyannopoulos, UW 82a2f33e023f706cab024f6432b0f1c5 https://www.encodeproject.org/files/ENCFF001XOR/@@download/ENCFF001XOR.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XOT bed narrowPeak peaks ENCSR000DRN ChIP-seq EFO:0001159 GM12872 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HFD 635856 John Stamatoyannopoulos, UW 7c42c32d8faa1855e968d7fb53ace264 https://www.encodeproject.org/files/ENCFF001XOT/@@download/ENCFF001XOT.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCI bed narrowPeak optimal idr thresholded peaks ENCSR000DRN ChIP-seq EFO:0001159 GM12872 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2, 3 ENCFF001HFC, ENCFF001HFD, ENCFF001HFJ 1005116 ENCODE Consortium Analysis Working Group c13d43cf6abb466e1a776490b00ecc61 https://www.encodeproject.org/files/ENCFF002DCI/@@download/ENCFF002DCI.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF868LBG bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1 ENCFF514TMK, ENCFF569SHN, ENCFF788OKP 5750712 ENCODE Processing Pipeline 3c031b4a2a9257a436ab3fe5d04af78a https://www.encodeproject.org/files/ENCFF868LBG/@@download/ENCFF868LBG.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF185NJI bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 2 ENCFF514TMK, ENCFF569SHN, ENCFF944TNR 3734529 ENCODE Processing Pipeline 6fe5046380f9c11ee46a57acfd0cbb78 https://www.encodeproject.org/files/ENCFF185NJI/@@download/ENCFF185NJI.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF303LYL bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF514TMK, ENCFF569SHN, ENCFF788OKP, ENCFF944TNR 5989089 ENCODE Processing Pipeline 88f2bb55e1599e6dd8aff4296e49d36c https://www.encodeproject.org/files/ENCFF303LYL/@@download/ENCFF303LYL.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF615GTV bed narrowPeak optimal idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF185NJI, ENCFF303LYL, ENCFF419RSJ, ENCFF868LBG 914063 ENCODE Processing Pipeline 39f6644121517d0f32c11b4ebf0251e3 https://www.encodeproject.org/files/ENCFF615GTV/@@download/ENCFF615GTV.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF378LBW bed narrowPeak conservative idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF185NJI, ENCFF303LYL, ENCFF419RSJ, ENCFF868LBG 793392 ENCODE Processing Pipeline 4c505be101ebd635cacf4810f65e09c6 https://www.encodeproject.org/files/ENCFF378LBW/@@download/ENCFF378LBW.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF781ICW bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 2 ENCFF289PMY, ENCFF685FVQ, ENCFF698OND 3787582 ENCODE Processing Pipeline 21e96d4e43780edaff60b2cfd03428ee https://www.encodeproject.org/files/ENCFF781ICW/@@download/ENCFF781ICW.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF335GSE bed narrowPeak optimal idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF014XSY, ENCFF142SVH, ENCFF781ICW 934065 ENCODE Processing Pipeline 1d3fadf80cf68565771e62c429c76195 https://www.encodeproject.org/files/ENCFF335GSE/@@download/ENCFF335GSE.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF014XSY bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF289PMY, ENCFF631JUR, ENCFF685FVQ, ENCFF698OND 6159477 ENCODE Processing Pipeline e0c8d95ab2bbf7c0fb23c43e133f1abd https://www.encodeproject.org/files/ENCFF014XSY/@@download/ENCFF014XSY.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF142SVH bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1 ENCFF289PMY, ENCFF631JUR, ENCFF698OND 5855036 ENCODE Processing Pipeline 8541b4c839db43ae7c053eefceb4139e https://www.encodeproject.org/files/ENCFF142SVH/@@download/ENCFF142SVH.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF219RMZ bed narrowPeak conservative idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF014XSY, ENCFF142SVH, ENCFF781ICW 804325 ENCODE Processing Pipeline c550913268d191f3b946654227b1dd09 https://www.encodeproject.org/files/ENCFF219RMZ/@@download/ENCFF219RMZ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF001XLM bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GVI 595003 John Stamatoyannopoulos, UW ec0e5a0e816cd54f88a504691ca7db39 https://www.encodeproject.org/files/ENCFF001XLM/@@download/ENCFF001XLM.bed.gz hg19 archived borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking extremely low read depth ENCFF001XLO bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GVJ 946215 John Stamatoyannopoulos, UW b9276c97fe64d2aeb9b193e1852d731d https://www.encodeproject.org/files/ENCFF001XLO/@@download/ENCFF001XLO.bed.gz hg19 archived borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking extremely low read depth ENCFF002DBU bed narrowPeak optimal idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001GVI, ENCFF001GVJ 967359 ENCODE Consortium Analysis Working Group fa369882e7ed1a19021d3f1729c4c598 https://www.encodeproject.org/files/ENCFF002DBU/@@download/ENCFF002DBU.bed.gz hg19 archived borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking extremely low read depth ENCFF759BEL bed narrowPeak conservative idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF096GLZ, ENCFF115DAO, ENCFF605UGV 551349 ENCODE Processing Pipeline 3017dad6e612a46da4be6b442a84dcbf https://www.encodeproject.org/files/ENCFF759BEL/@@download/ENCFF759BEL.bed.gz hg19 released borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking extremely low read depth ENCFF096GLZ bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF076ZNH, ENCFF251TYG 1064010 ENCODE Processing Pipeline baeab40cacbef5a56d321a1785ca47c7 https://www.encodeproject.org/files/ENCFF096GLZ/@@download/ENCFF096GLZ.bed.gz hg19 released borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking extremely low read depth ENCFF944VAE bed narrowPeak optimal idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF096GLZ, ENCFF115DAO, ENCFF605UGV 742448 ENCODE Processing Pipeline 27944057da59b906cd704d994fbe20b7 https://www.encodeproject.org/files/ENCFF944VAE/@@download/ENCFF944VAE.bed.gz hg19 released borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking extremely low read depth ENCFF115DAO bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF251TYG, ENCFF874DYB 4304795 ENCODE Processing Pipeline c8db2b2aab2e1aed3552f27a80ea6a95 https://www.encodeproject.org/files/ENCFF115DAO/@@download/ENCFF115DAO.bed.gz hg19 released borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking extremely low read depth ENCFF605UGV bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF076ZNH, ENCFF251TYG, ENCFF874DYB 4421244 ENCODE Processing Pipeline c7c12b411875c717c44c8a6a3219f2c9 https://www.encodeproject.org/files/ENCFF605UGV/@@download/ENCFF605UGV.bed.gz hg19 released borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, severe bottlenecking extremely low read depth ENCFF001XRE bed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HNZ 718569 John Stamatoyannopoulos, UW aacb1925e2474e71d34ee1b580cb620c https://www.encodeproject.org/files/ENCFF001XRE/@@download/ENCFF001XRE.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF002DCY bed narrowPeak optimal idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HNZ 680211 ENCODE Consortium Analysis Working Group e3c022ea9f7be7acf4d1ea7ccf3b03e6 https://www.encodeproject.org/files/ENCFF002DCY/@@download/ENCFF002DCY.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF017PXX bed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF357OBP, ENCFF863WTF 3710075 ENCODE Processing Pipeline 1729cdd7966de8407ccc6a0f14a7c604 https://www.encodeproject.org/files/ENCFF017PXX/@@download/ENCFF017PXX.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF652MLT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001TDO, ENCFF017PXX 580453 ENCODE Processing Pipeline b583f5727cf5e66c4c9cf96d08a871a1 https://www.encodeproject.org/files/ENCFF652MLT/@@download/ENCFF652MLT.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF412LSU bed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF342YSK, ENCFF361TNY 3790897 ENCODE Processing Pipeline 452fded24d35eaa43b68cb8a7537cd5f https://www.encodeproject.org/files/ENCFF412LSU/@@download/ENCFF412LSU.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF273NIW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF412LSU, ENCFF419RSJ 597383 ENCODE Processing Pipeline b3e6f38b80fd787639758423b7ca8943 https://www.encodeproject.org/files/ENCFF273NIW/@@download/ENCFF273NIW.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF021ZIA bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF954JCE 7092118 ENCODE Processing Pipeline 0debfbe11439ad239461a13416aaebb4 https://www.encodeproject.org/files/ENCFF021ZIA/@@download/ENCFF021ZIA.bed.gz hg19 released missing unfiltered alignments ENCFF427NOB bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF799SDQ 7065200 ENCODE Processing Pipeline 0370b4b4e2d0e8e1dbeb063ebc9cc43e https://www.encodeproject.org/files/ENCFF427NOB/@@download/ENCFF427NOB.bed.gz hg19 released missing unfiltered alignments ENCFF057EFZ bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF799SDQ, ENCFF954JCE 7278053 ENCODE Processing Pipeline 2869a0146aa32ae898ee420929f654c2 https://www.encodeproject.org/files/ENCFF057EFZ/@@download/ENCFF057EFZ.bed.gz hg19 released missing unfiltered alignments ENCFF319BJJ bed narrowPeak conservative idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021ZIA, ENCFF057EFZ, ENCFF427NOB 610605 ENCODE Processing Pipeline 0a42cd0593704887fbc7e521c224ec0e https://www.encodeproject.org/files/ENCFF319BJJ/@@download/ENCFF319BJJ.bed.gz hg19 released missing unfiltered alignments ENCFF728WNY bed narrowPeak optimal idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021ZIA, ENCFF057EFZ, ENCFF427NOB 697367 ENCODE Processing Pipeline edd5bdc63348ba18d02943acb10ad47f https://www.encodeproject.org/files/ENCFF728WNY/@@download/ENCFF728WNY.bed.gz hg19 released missing unfiltered alignments ENCFF684NDR bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF354GWS 7013770 ENCODE Processing Pipeline eb08fe7980a8ce3b83718175690c7f62 https://www.encodeproject.org/files/ENCFF684NDR/@@download/ENCFF684NDR.bed.gz GRCh38 released missing unfiltered alignments ENCFF647ELH bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF354GWS, ENCFF864ELR 7277866 ENCODE Processing Pipeline 26bd98fa79ce1aac016dd6f91afbf8be https://www.encodeproject.org/files/ENCFF647ELH/@@download/ENCFF647ELH.bed.gz GRCh38 released missing unfiltered alignments ENCFF285QVL bed narrowPeak optimal idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF151CRB, ENCFF419RSJ, ENCFF647ELH, ENCFF684NDR 685989 ENCODE Processing Pipeline 23a90291cf5de070ed0fbb4b0af32768 https://www.encodeproject.org/files/ENCFF285QVL/@@download/ENCFF285QVL.bed.gz GRCh38 released missing unfiltered alignments ENCFF151CRB bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF864ELR 7036705 ENCODE Processing Pipeline 440d0a4c2499b590ff877971c2843e2a https://www.encodeproject.org/files/ENCFF151CRB/@@download/ENCFF151CRB.bed.gz GRCh38 released missing unfiltered alignments ENCFF726DPQ bed narrowPeak conservative idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 immortalized cell line embryonic female unknown Homo sapiens eGFP-CTCF-human ENCAB976SGG DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF151CRB, ENCFF419RSJ, ENCFF647ELH, ENCFF684NDR 611515 ENCODE Processing Pipeline a09eed6bd7ca0ed410066b85b4e250ec https://www.encodeproject.org/files/ENCFF726DPQ/@@download/ENCFF726DPQ.bed.gz GRCh38 released missing unfiltered alignments ENCFF991BYK bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 immortalized cell line adult male 60 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1 ENCFF631ENA, ENCFF863PSQ 5309087 ENCODE Processing Pipeline c46f9417bf9f125a43237f15c8b67e09 https://www.encodeproject.org/files/ENCFF991BYK/@@download/ENCFF991BYK.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO, missing unfiltered alignments poor library complexity, partially characterized antibody, severe bottlenecking ENCFF019JIE bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 immortalized cell line adult male 60 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 2 ENCFF092CZO, ENCFF838RMJ 5715915 ENCODE Processing Pipeline 6edfc81e704601bdf2792aded8fd38d1 https://www.encodeproject.org/files/ENCFF019JIE/@@download/ENCFF019JIE.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO, missing unfiltered alignments poor library complexity, partially characterized antibody, severe bottlenecking ENCFF685JJH bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 immortalized cell line adult male 60 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF092CZO, ENCFF631ENA, ENCFF838RMJ, ENCFF863PSQ 6486853 ENCODE Processing Pipeline 211c3be4c55d410ce354b7b558434d8d https://www.encodeproject.org/files/ENCFF685JJH/@@download/ENCFF685JJH.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO, missing unfiltered alignments poor library complexity, partially characterized antibody, severe bottlenecking ENCFF837RIT bed narrowPeak optimal idr thresholded peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 immortalized cell line adult male 60 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF019JIE, ENCFF419RSJ, ENCFF685JJH, ENCFF991BYK 1048700 ENCODE Processing Pipeline 1a3d207c16b079672b6b9281ef55d4bd https://www.encodeproject.org/files/ENCFF837RIT/@@download/ENCFF837RIT.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO, missing unfiltered alignments poor library complexity, partially characterized antibody, severe bottlenecking ENCFF459CAS bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 immortalized cell line adult male 60 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1 ENCFF548ADC, ENCFF555IHR 5342620 ENCODE Processing Pipeline f5df4923584165f94918c3d895af839e https://www.encodeproject.org/files/ENCFF459CAS/@@download/ENCFF459CAS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO, missing unfiltered alignments poor library complexity, partially characterized antibody, severe bottlenecking ENCFF268CZL bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 immortalized cell line adult male 60 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 2 ENCFF596CVC, ENCFF815IAY 5807811 ENCODE Processing Pipeline 7c1eed46b0949017e679dddb6d549375 https://www.encodeproject.org/files/ENCFF268CZL/@@download/ENCFF268CZL.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO, missing unfiltered alignments poor library complexity, partially characterized antibody, severe bottlenecking ENCFF824YYD bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 immortalized cell line adult male 60 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF548ADC, ENCFF555IHR, ENCFF596CVC, ENCFF815IAY 6544148 ENCODE Processing Pipeline b0d0ba90bfecd62ef3d2426ba4026301 https://www.encodeproject.org/files/ENCFF824YYD/@@download/ENCFF824YYD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO, missing unfiltered alignments poor library complexity, partially characterized antibody, severe bottlenecking ENCFF421PBO bed narrowPeak optimal idr thresholded peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 immortalized cell line adult male 60 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF001TDO, ENCFF268CZL, ENCFF459CAS, ENCFF824YYD 1053984 ENCODE Processing Pipeline d43f7f5ed061c81af73fc2007fc4995e https://www.encodeproject.org/files/ENCFF421PBO/@@download/ENCFF421PBO.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO, missing unfiltered alignments poor library complexity, partially characterized antibody, severe bottlenecking ENCFF001XQH bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKX 1162789 John Stamatoyannopoulos, UW dd855a335c003a27e3e2c404462bf149 https://www.encodeproject.org/files/ENCFF001XQH/@@download/ENCFF001XQH.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF001XQI bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLC 930265 John Stamatoyannopoulos, UW 8cb17cf60a3910f60e2d3659114a6ce5 https://www.encodeproject.org/files/ENCFF001XQI/@@download/ENCFF001XQI.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF002DCS bed narrowPeak optimal idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HKX, ENCFF001HLC 1206074 ENCODE Consortium Analysis Working Group caa5260e6a967b9abfb921c04eddf43d https://www.encodeproject.org/files/ENCFF002DCS/@@download/ENCFF002DCS.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF727MVC bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF227BBG, ENCFF425AZR 4424730 ENCODE Processing Pipeline c65dc880692f2efc307ab2f6641317c1 https://www.encodeproject.org/files/ENCFF727MVC/@@download/ENCFF727MVC.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF993NKI bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF227BBG, ENCFF545GUP 4313817 ENCODE Processing Pipeline 469540e1d2b610d79d06942c42fa4dc5 https://www.encodeproject.org/files/ENCFF993NKI/@@download/ENCFF993NKI.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF730JDO bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF227BBG, ENCFF425AZR, ENCFF545GUP 5001018 ENCODE Processing Pipeline 85abd3f188f51e83732fbd4466fd194c https://www.encodeproject.org/files/ENCFF730JDO/@@download/ENCFF730JDO.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF136ZAK bed narrowPeak optimal idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF727MVC, ENCFF730JDO, ENCFF993NKI 991571 ENCODE Processing Pipeline cc242fc52ed013d53bcdf4a8ff38222b https://www.encodeproject.org/files/ENCFF136ZAK/@@download/ENCFF136ZAK.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF009MRG bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF519LBB, ENCFF783NTR, ENCFF788YCK 5067397 ENCODE Processing Pipeline a45c4e8363dc4a44744236df33d939b0 https://www.encodeproject.org/files/ENCFF009MRG/@@download/ENCFF009MRG.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF680YPK bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF783NTR, ENCFF788YCK 4426464 ENCODE Processing Pipeline 7d41c9c627502dd068266c2530142b6d https://www.encodeproject.org/files/ENCFF680YPK/@@download/ENCFF680YPK.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF507VHP bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF519LBB, ENCFF783NTR 4243444 ENCODE Processing Pipeline 5beeef7135e9f5251327dee9b9ae1a12 https://www.encodeproject.org/files/ENCFF507VHP/@@download/ENCFF507VHP.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF700ILD bed narrowPeak conservative idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF009MRG, ENCFF507VHP, ENCFF680YPK 1007156 ENCODE Processing Pipeline 7b2e0a041b8477ea6dab8a9cee310a18 https://www.encodeproject.org/files/ENCFF700ILD/@@download/ENCFF700ILD.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF002CED bed narrowPeak optimal idr thresholded peaks ENCSR000ANE ChIP-seq CL:0000515 skeletal muscle myoblast primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1080918 ENCODE Consortium Analysis Working Group e97cd9039bc0b5bbeb7d3b27d3fecbb9 https://www.encodeproject.org/files/ENCFF002CED/@@download/ENCFF002CED.bed.gz hg19 archived mild to moderate bottlenecking, low read length missing derived_from insufficient read depth ENCFF901BGG bed narrowPeak optimal idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF265NZD, ENCFF499RVM, ENCFF696QFR 771337 ENCODE Processing Pipeline 7c52b039f0a5e21db97ef3f12a4d997b https://www.encodeproject.org/files/ENCFF901BGG/@@download/ENCFF901BGG.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF137FQL bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 2 ENCFF183SXR, ENCFF727ZMM, ENCFF866GOS 7148709 ENCODE Processing Pipeline 6c71133446f29abff1c871e83c014ad8 https://www.encodeproject.org/files/ENCFF137FQL/@@download/ENCFF137FQL.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF499RVM bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1 ENCFF271APY, ENCFF540UGI, ENCFF854RGJ 7197917 ENCODE Processing Pipeline 66fad398ac62fbfd8c5fab793951b147 https://www.encodeproject.org/files/ENCFF499RVM/@@download/ENCFF499RVM.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF696QFR bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF271APY, ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 7186218 ENCODE Processing Pipeline 7a081bd8581e98feb2ef0ef62ad56bca https://www.encodeproject.org/files/ENCFF696QFR/@@download/ENCFF696QFR.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF482VUA bed narrowPeak conservative idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF265NZD, ENCFF499RVM, ENCFF696QFR 587195 ENCODE Processing Pipeline b66836880226b9aa020b46732862ca57 https://www.encodeproject.org/files/ENCFF482VUA/@@download/ENCFF482VUA.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF265NZD bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 2 ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 7207096 ENCODE Processing Pipeline b6d0dca4b146c770fc2c5697cd8aa194 https://www.encodeproject.org/files/ENCFF265NZD/@@download/ENCFF265NZD.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF996YCP bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF183SXR, ENCFF711LPL, ENCFF727ZMM, ENCFF866GOS 7169442 ENCODE Processing Pipeline 32b0f42aa078706f9001c3b96ff58f5c https://www.encodeproject.org/files/ENCFF996YCP/@@download/ENCFF996YCP.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF004LSM bed narrowPeak conservative idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF137FQL, ENCFF281STR, ENCFF419RSJ, ENCFF996YCP 584259 ENCODE Processing Pipeline bc7c903429140cebf47535521ff95765 https://www.encodeproject.org/files/ENCFF004LSM/@@download/ENCFF004LSM.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status, mismatched file status ENCFF501SHB bed narrowPeak optimal idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF137FQL, ENCFF281STR, ENCFF419RSJ, ENCFF996YCP 771828 ENCODE Processing Pipeline b3d9060f8d80222fdb9533dee5d136eb https://www.encodeproject.org/files/ENCFF501SHB/@@download/ENCFF501SHB.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status, mismatched file status ENCFF279POO bed narrowPeak peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF590YRR, ENCFF882RAK 7170449 ENCODE Processing Pipeline 49b0fde64fd93714da5d66d6bf53f219 https://www.encodeproject.org/files/ENCFF279POO/@@download/ENCFF279POO.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF689ZNH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF279POO 434711 ENCODE Processing Pipeline f4ee2a8efd651a90cb1f2b82d4c60d57 https://www.encodeproject.org/files/ENCFF689ZNH/@@download/ENCFF689ZNH.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF066NBQ bed narrowPeak peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF503UVW, ENCFF600VZB 7151900 ENCODE Processing Pipeline abe96081cdb4ece2ed306af43e7a1e63 https://www.encodeproject.org/files/ENCFF066NBQ/@@download/ENCFF066NBQ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF314SQB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF066NBQ, ENCFF419RSJ 424370 ENCODE Processing Pipeline 6a185a0a1794dd4433f81249818d3ddf https://www.encodeproject.org/files/ENCFF314SQB/@@download/ENCFF314SQB.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001UTQ bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1397830 Vishwanath Iyer, UTA 95394af7bd63442938449bc55a19bea7 https://www.encodeproject.org/files/ENCFF001UTQ/@@download/ENCFF001UTQ.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from poor library complexity ENCFF002DBK bed narrowPeak optimal idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1204700 ENCODE Consortium Analysis Working Group 0cbea058963fdb97803bd31b4d28039b https://www.encodeproject.org/files/ENCFF002DBK/@@download/ENCFF002DBK.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from poor library complexity ENCFF962IZR bed narrowPeak conservative idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF008HMA, ENCFF395NDN, ENCFF419RSJ, ENCFF766MRE 974606 ENCODE Processing Pipeline 82e3ae4884978a82889b6b3d06742985 https://www.encodeproject.org/files/ENCFF962IZR/@@download/ENCFF962IZR.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity ENCFF395NDN bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF181EQP, ENCFF946WAV 5505393 ENCODE Processing Pipeline 09cfcf2f1606e5bf8829e8fb3263897c https://www.encodeproject.org/files/ENCFF395NDN/@@download/ENCFF395NDN.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity ENCFF766MRE bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF897MGD, ENCFF946WAV 4931928 ENCODE Processing Pipeline a6fc0fbfade40bc8d2706abbfc0c6a47 https://www.encodeproject.org/files/ENCFF766MRE/@@download/ENCFF766MRE.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity ENCFF628EUU bed narrowPeak optimal idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF008HMA, ENCFF395NDN, ENCFF419RSJ, ENCFF766MRE 1034421 ENCODE Processing Pipeline 77cc2f57925da39730c96e7300bd60fb https://www.encodeproject.org/files/ENCFF628EUU/@@download/ENCFF628EUU.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity ENCFF008HMA bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF181EQP, ENCFF897MGD, ENCFF946WAV 6151872 ENCODE Processing Pipeline 9487468101c1360d056d4dee52603778 https://www.encodeproject.org/files/ENCFF008HMA/@@download/ENCFF008HMA.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity ENCFF001URZ bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1098028 Vishwanath Iyer, UTA d569f0c82f20b4f8dc5d0dd7534be445 https://www.encodeproject.org/files/ENCFF001URZ/@@download/ENCFF001URZ.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF002DAD bed narrowPeak optimal idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1165527 ENCODE Consortium Analysis Working Group 3315f9544c1bfca99b7e9de28d0d5313 https://www.encodeproject.org/files/ENCFF002DAD/@@download/ENCFF002DAD.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF633TEW bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF663XYQ, ENCFF810XBE 5297138 ENCODE Processing Pipeline e78d3948f97ad5dd290c5e1f0b211e7a https://www.encodeproject.org/files/ENCFF633TEW/@@download/ENCFF633TEW.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF537OSB bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF664APT, ENCFF810XBE 5502546 ENCODE Processing Pipeline e0b066ceb62927796903cc9483f6e032 https://www.encodeproject.org/files/ENCFF537OSB/@@download/ENCFF537OSB.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF935ZMQ bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF663XYQ, ENCFF664APT, ENCFF810XBE 6177696 ENCODE Processing Pipeline 91467fd7ef3a9ac653b15c769d5e42ed https://www.encodeproject.org/files/ENCFF935ZMQ/@@download/ENCFF935ZMQ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF248QLS bed narrowPeak conservative idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF537OSB, ENCFF633TEW, ENCFF935ZMQ 575276 ENCODE Processing Pipeline 5e382901f5d64a405f724190289590a6 https://www.encodeproject.org/files/ENCFF248QLS/@@download/ENCFF248QLS.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF535MZG bed narrowPeak optimal idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF537OSB, ENCFF633TEW, ENCFF935ZMQ 694141 ENCODE Processing Pipeline 07781d6d01a89705d9608fad5b64c0f6 https://www.encodeproject.org/files/ENCFF535MZG/@@download/ENCFF535MZG.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF002CDZ bed narrowPeak optimal idr thresholded peaks ENCSR000AMA ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 912727 ENCODE Consortium Analysis Working Group 60297ea056e4f28e80c89fa0a0a7a486 https://www.encodeproject.org/files/ENCFF002CDZ/@@download/ENCFF002CDZ.bed.gz hg19 archived inconsistent platforms, borderline replicate concordance, low read length missing derived_from insufficient read depth extremely low read depth ENCFF751MAY bed narrowPeak peaks ENCSR000AMA ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1 ENCFF094DVS, ENCFF645CCA, ENCFF943MYJ 991798 ENCODE Processing Pipeline 934496f63d37227ced58df492081f68d https://www.encodeproject.org/files/ENCFF751MAY/@@download/ENCFF751MAY.bed.gz GRCh38 released inconsistent platforms, borderline replicate concordance, low read length insufficient read depth extremely low read depth ENCFF286EMA bed narrowPeak conservative idr thresholded peaks ENCSR000AMA ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF047HLA, ENCFF419RSJ, ENCFF751MAY, ENCFF901VQJ 536593 ENCODE Processing Pipeline 37e8d98c9f9d52d223a2047de589ef2b https://www.encodeproject.org/files/ENCFF286EMA/@@download/ENCFF286EMA.bed.gz GRCh38 released inconsistent platforms, borderline replicate concordance, low read length insufficient read depth extremely low read depth ENCFF047HLA bed narrowPeak peaks ENCSR000AMA ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 2 ENCFF031UNH, ENCFF645CCA, ENCFF943MYJ 3774661 ENCODE Processing Pipeline 8ed01b3ad8c51bca09741c983cb632c9 https://www.encodeproject.org/files/ENCFF047HLA/@@download/ENCFF047HLA.bed.gz GRCh38 released inconsistent platforms, borderline replicate concordance, low read length insufficient read depth extremely low read depth ENCFF901VQJ bed narrowPeak peaks ENCSR000AMA ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF031UNH, ENCFF094DVS, ENCFF645CCA, ENCFF943MYJ 4452053 ENCODE Processing Pipeline 427cae4dd8606cf8d616fcdaecc2b6ed https://www.encodeproject.org/files/ENCFF901VQJ/@@download/ENCFF901VQJ.bed.gz GRCh38 released inconsistent platforms, borderline replicate concordance, low read length insufficient read depth extremely low read depth ENCFF612ZUY bed narrowPeak optimal idr thresholded peaks ENCSR000AMA ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF047HLA, ENCFF419RSJ, ENCFF751MAY, ENCFF901VQJ 690759 ENCODE Processing Pipeline 016fa2d91a6650e8f32dec4815c3fc29 https://www.encodeproject.org/files/ENCFF612ZUY/@@download/ENCFF612ZUY.bed.gz GRCh38 released inconsistent platforms, borderline replicate concordance, low read length insufficient read depth extremely low read depth ENCFF001USN bed narrowPeak peaks ENCSR000DLD ChIP-seq EFO:0002788 GM19238 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1188817 Vishwanath Iyer, UTA fc1b839efa8f54f75eb47cc6803b478c https://www.encodeproject.org/files/ENCFF001USN/@@download/ENCFF001USN.bed.gz hg19 archived mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF002DAN bed narrowPeak optimal idr thresholded peaks ENCSR000DLD ChIP-seq EFO:0002788 GM19238 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 965256 ENCODE Consortium Analysis Working Group fbdea344d7b952cd0352988b0759525b https://www.encodeproject.org/files/ENCFF002DAN/@@download/ENCFF002DAN.bed.gz hg19 archived mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF945IDU bed narrowPeak peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF687UPN, ENCFF721SJQ 6219710 ENCODE Processing Pipeline bd52af1a09149720674a17d9ebca50e6 https://www.encodeproject.org/files/ENCFF945IDU/@@download/ENCFF945IDU.bed.gz hg19 released experiment not submitted to GEO ENCFF611IFP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF945IDU 517476 ENCODE Processing Pipeline 6bd2d68fdd71a9487b16589e38ef64f2 https://www.encodeproject.org/files/ENCFF611IFP/@@download/ENCFF611IFP.bed.gz hg19 released experiment not submitted to GEO ENCFF350ZNU bed narrowPeak peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF305KDB, ENCFF466DPA 6221993 ENCODE Processing Pipeline a777f176998a21d2965326fb7e2c9fce https://www.encodeproject.org/files/ENCFF350ZNU/@@download/ENCFF350ZNU.bed.gz GRCh38 released experiment not submitted to GEO ENCFF781YVT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF350ZNU, ENCFF419RSJ 517996 ENCODE Processing Pipeline 4ce9ae911e754e86d8b9c16f161eba44 https://www.encodeproject.org/files/ENCFF781YVT/@@download/ENCFF781YVT.bed.gz GRCh38 released experiment not submitted to GEO ENCFF005DKU bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 2 ENCFF557VQL, ENCFF839WER, ENCFF944NDZ 6006003 ENCODE Processing Pipeline e5b321286ebb2eada7757e176a9b3aaa https://www.encodeproject.org/files/ENCFF005DKU/@@download/ENCFF005DKU.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF169NVW bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 1 ENCFF522LXS, ENCFF557VQL, ENCFF944NDZ 5886358 ENCODE Processing Pipeline 478fbc0e5b109a00b762d3de3e615126 https://www.encodeproject.org/files/ENCFF169NVW/@@download/ENCFF169NVW.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF736LBL bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 2 ENCFF087GJL, ENCFF092HKY, ENCFF687EVJ 6013482 ENCODE Processing Pipeline e90c186ea3598929d636d4b1f7b5c3eb https://www.encodeproject.org/files/ENCFF736LBL/@@download/ENCFF736LBL.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF374BNP bed narrowPeak optimal idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF070WIW, ENCFF536TDH, ENCFF736LBL 454345 ENCODE Processing Pipeline 683ef5fc6a8f9999e64a515baa290711 https://www.encodeproject.org/files/ENCFF374BNP/@@download/ENCFF374BNP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF536TDH bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 1 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ 5644080 ENCODE Processing Pipeline 05b105e77069b9e7001308767202f8e7 https://www.encodeproject.org/files/ENCFF536TDH/@@download/ENCFF536TDH.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF423JIG bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 1, 2 ENCFF522LXS, ENCFF557VQL, ENCFF839WER, ENCFF944NDZ 6511583 ENCODE Processing Pipeline 64a916be06afc35559e0d8c9dd942521 https://www.encodeproject.org/files/ENCFF423JIG/@@download/ENCFF423JIG.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF122IMV bed narrowPeak optimal idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 1, 2 ENCFF005DKU, ENCFF169NVW, ENCFF419RSJ, ENCFF423JIG 454350 ENCODE Processing Pipeline ba031dc1cea6e9bd06a9a64ce69994e4 https://www.encodeproject.org/files/ENCFF122IMV/@@download/ENCFF122IMV.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF070WIW bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 1, 2 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ, ENCFF687EVJ 6467565 ENCODE Processing Pipeline 19d4edecd4ac9965263b0c4a24d819c2 https://www.encodeproject.org/files/ENCFF070WIW/@@download/ENCFF070WIW.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF514ZSQ bed narrowPeak conservative idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF070WIW, ENCFF536TDH, ENCFF736LBL 436266 ENCODE Processing Pipeline d3f85c8ff6c84998b6ba946daec0f6fc https://www.encodeproject.org/files/ENCFF514ZSQ/@@download/ENCFF514ZSQ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF983ZND bed narrowPeak conservative idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-12-01 ENCODE 1, 2 ENCFF005DKU, ENCFF169NVW, ENCFF419RSJ, ENCFF423JIG 445762 ENCODE Processing Pipeline a8236342339f54bbd7ff23389412d55a https://www.encodeproject.org/files/ENCFF983ZND/@@download/ENCFF983ZND.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF452IFH bed narrowPeak peaks ENCSR130TQM ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 3 1 ENCFF298BPR, ENCFF899PRC 671726 Tim Reddy, Duke 1a8f62ba5817371a3a092ce06d1efb4f https://www.encodeproject.org/files/ENCFF452IFH/@@download/ENCFF452IFH.bed.gz GRCh38 released ENCFF193YLU bed narrowPeak peaks ENCSR130TQM ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF295PIG, ENCFF923SPD 390439 Tim Reddy, Duke 2d7173ce3f1a88172254f26b102084e6 https://www.encodeproject.org/files/ENCFF193YLU/@@download/ENCFF193YLU.bed.gz GRCh38 released ENCFF181JBX bed narrowPeak peaks ENCSR553UWG ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF197RCJ, ENCFF532THR 682045 Tim Reddy, Duke 1cd2c001856fc7e36d4bd81f280039f8 https://www.encodeproject.org/files/ENCFF181JBX/@@download/ENCFF181JBX.bed.gz GRCh38 released ENCFF001VDP bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 736283 Michael Snyder, Stanford 7264cd2dd1a9f716bb4536e89a539c21 https://www.encodeproject.org/files/ENCFF001VDP/@@download/ENCFF001VDP.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF277ZAR bed narrowPeak conservative idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF197CSR, ENCFF419RSJ, ENCFF728DOD, ENCFF761MXG 612210 ENCODE Processing Pipeline 22fd1442eea12dc38b86cf90363f9438 https://www.encodeproject.org/files/ENCFF277ZAR/@@download/ENCFF277ZAR.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF761MXG bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 2 ENCFF280TYK 4627579 ENCODE Processing Pipeline f07388e84ef4772dc0c8060fb84ff6f9 https://www.encodeproject.org/files/ENCFF761MXG/@@download/ENCFF761MXG.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF728DOD bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF280TYK, ENCFF835YDD 5455685 ENCODE Processing Pipeline 40e8cbfa1debbc4c8f0543ec62852e74 https://www.encodeproject.org/files/ENCFF728DOD/@@download/ENCFF728DOD.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF646TUX bed narrowPeak optimal idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF197CSR, ENCFF419RSJ, ENCFF728DOD, ENCFF761MXG 786194 ENCODE Processing Pipeline df17d627ec4ff9af4a702ffa2e6c8dda https://www.encodeproject.org/files/ENCFF646TUX/@@download/ENCFF646TUX.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF197CSR bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1 ENCFF835YDD 4799577 ENCODE Processing Pipeline 7ea0eed92b9c89423e77e6d05cc6e8f2 https://www.encodeproject.org/files/ENCFF197CSR/@@download/ENCFF197CSR.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF001XOY bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HFV 793103 John Stamatoyannopoulos, UW 70e7f4f6dee47ffba8ecb3def8015f2f https://www.encodeproject.org/files/ENCFF001XOY/@@download/ENCFF001XOY.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XOZ bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HFX 745778 John Stamatoyannopoulos, UW cdca511167e91115ca5b003bf223e53c https://www.encodeproject.org/files/ENCFF001XOZ/@@download/ENCFF001XOZ.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XPA bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 3 ENCFF001HGD 961610 John Stamatoyannopoulos, UW 639ab4b4fe0dbf363bb30df4ee804315 https://www.encodeproject.org/files/ENCFF001XPA/@@download/ENCFF001XPA.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCJ bed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2, 3 ENCFF001HFV, ENCFF001HFX, ENCFF001HGD 1028403 ENCODE Consortium Analysis Working Group 48b1254a59a376a9f198227e6e12d5c4 https://www.encodeproject.org/files/ENCFF002DCJ/@@download/ENCFF002DCJ.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF380UJY bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF471JZR, ENCFF968YYG 2610991 ENCODE Processing Pipeline 7c3b8151075c83a5570662febe59cd2a https://www.encodeproject.org/files/ENCFF380UJY/@@download/ENCFF380UJY.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF247DGH bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF325SIY, ENCFF471JZR, ENCFF968YYG 4611335 ENCODE Processing Pipeline ec62fa1042e06d856cf78ea5cdd8b085 https://www.encodeproject.org/files/ENCFF247DGH/@@download/ENCFF247DGH.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF462FSG bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF636PUW 2716822 ENCODE Processing Pipeline c44cd05154805143215319cd3adea4a1 https://www.encodeproject.org/files/ENCFF462FSG/@@download/ENCFF462FSG.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF728WXF bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 3 ENCFF325SIY, ENCFF968YYG 4326936 ENCODE Processing Pipeline 6b0caa81a48d1b864b8eff0b0fb83cdd https://www.encodeproject.org/files/ENCFF728WXF/@@download/ENCFF728WXF.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF832UKT bed narrowPeak conservative idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF001TDO, ENCFF247DGH, ENCFF380UJY, ENCFF728WXF 791830 ENCODE Processing Pipeline cf807e0ab23798d46f390e7bb573e71f https://www.encodeproject.org/files/ENCFF832UKT/@@download/ENCFF832UKT.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF345DET bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 3 ENCFF877MTF 4502468 ENCODE Processing Pipeline bf3af4aa9eaf4809740ae330405c7465 https://www.encodeproject.org/files/ENCFF345DET/@@download/ENCFF345DET.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF295AWO bed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF001TDO, ENCFF247DGH, ENCFF380UJY, ENCFF728WXF 816014 ENCODE Processing Pipeline 5a6de8426a7aa0847344dedf53b3ab41 https://www.encodeproject.org/files/ENCFF295AWO/@@download/ENCFF295AWO.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF106MKA bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF636PUW, ENCFF877MTF 4739887 ENCODE Processing Pipeline ce7ece5b775647cef45b6ee09650f480 https://www.encodeproject.org/files/ENCFF106MKA/@@download/ENCFF106MKA.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF116XHX bed narrowPeak conservative idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF106MKA, ENCFF345DET, ENCFF419RSJ, ENCFF462FSG 840534 ENCODE Processing Pipeline abe378b2f9d9796261c4826e81bd19f4 https://www.encodeproject.org/files/ENCFF116XHX/@@download/ENCFF116XHX.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF913EEI bed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF106MKA, ENCFF345DET, ENCFF419RSJ, ENCFF462FSG 867803 ENCODE Processing Pipeline 53bbcae4d39fc92941152e255652e335 https://www.encodeproject.org/files/ENCFF913EEI/@@download/ENCFF913EEI.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001USC bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1182432 Vishwanath Iyer, UTA e27c1acde99518f5f34f251f54c957a2 https://www.encodeproject.org/files/ENCFF001USC/@@download/ENCFF001USC.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF002DAG bed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1314888 ENCODE Consortium Analysis Working Group f34ed5e00d411207c10dfb09de833671 https://www.encodeproject.org/files/ENCFF002DAG/@@download/ENCFF002DAG.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF508GOX bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF472PUP, ENCFF509KAJ, ENCFF526MVX 6129162 ENCODE Processing Pipeline 3f74c29094e9ce37fdfc191c3a8bacac https://www.encodeproject.org/files/ENCFF508GOX/@@download/ENCFF508GOX.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF934FNQ bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF509KAJ, ENCFF526MVX 5457918 ENCODE Processing Pipeline 8ba543a68c361830421cd67c677fe9f7 https://www.encodeproject.org/files/ENCFF934FNQ/@@download/ENCFF934FNQ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF392ZGT bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 2 ENCFF472PUP, ENCFF509KAJ 5310577 ENCODE Processing Pipeline 82417e1fabbede5f002e5243335f8c7b https://www.encodeproject.org/files/ENCFF392ZGT/@@download/ENCFF392ZGT.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF252FHU bed narrowPeak conservative idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF392ZGT, ENCFF419RSJ, ENCFF508GOX, ENCFF934FNQ 705319 ENCODE Processing Pipeline b618e3be1e44cda4bdbb20d8adbfee87 https://www.encodeproject.org/files/ENCFF252FHU/@@download/ENCFF252FHU.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF723LVE bed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF392ZGT, ENCFF419RSJ, ENCFF508GOX, ENCFF934FNQ 836420 ENCODE Processing Pipeline 5ba0c58915ab24a504ada79825eaeb85 https://www.encodeproject.org/files/ENCFF723LVE/@@download/ENCFF723LVE.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF438LOQ bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF074APO, ENCFF424BXF, ENCFF440WDV 6129944 ENCODE Processing Pipeline b6479f0badd285a00daacb0e58941c96 https://www.encodeproject.org/files/ENCFF438LOQ/@@download/ENCFF438LOQ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF958WDO bed narrowPeak conservative idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF438LOQ, ENCFF618WVP, ENCFF835YPT 704634 ENCODE Processing Pipeline 195d6879eef6c5064ad0b7361df41f20 https://www.encodeproject.org/files/ENCFF958WDO/@@download/ENCFF958WDO.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF618WVP bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF424BXF, ENCFF440WDV 5442002 ENCODE Processing Pipeline df187c63a8ffb1ad9e723b1aa0a518ad https://www.encodeproject.org/files/ENCFF618WVP/@@download/ENCFF618WVP.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF835YPT bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 2 ENCFF074APO, ENCFF424BXF 5309313 ENCODE Processing Pipeline 414de378a66450e2030c2242e0d93478 https://www.encodeproject.org/files/ENCFF835YPT/@@download/ENCFF835YPT.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF909JAZ bed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF438LOQ, ENCFF618WVP, ENCFF835YPT 843442 ENCODE Processing Pipeline 8fa9219e1759affd4c0fc9fe6cdece07 https://www.encodeproject.org/files/ENCFF909JAZ/@@download/ENCFF909JAZ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF001UTS bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1492351 Vishwanath Iyer, UTA ad2972e4ab6e0b01298aef5d8a8eae23 https://www.encodeproject.org/files/ENCFF001UTS/@@download/ENCFF001UTS.bed.gz hg19 archived mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF002DBN bed narrowPeak optimal idr thresholded peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1753435 ENCODE Consortium Analysis Working Group 496fbddea93ea78e80800d1806a16089 https://www.encodeproject.org/files/ENCFF002DBN/@@download/ENCFF002DBN.bed.gz hg19 archived mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF022OYE bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF854DIW, ENCFF946WAV 5398773 ENCODE Processing Pipeline fdd4dcbd3027d3ae4e88bc5973b8e36f https://www.encodeproject.org/files/ENCFF022OYE/@@download/ENCFF022OYE.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF062CMA bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 2 ENCFF232NLC, ENCFF946WAV 5361318 ENCODE Processing Pipeline fdd2801cec4fea3d1f0e712750425f4d https://www.encodeproject.org/files/ENCFF062CMA/@@download/ENCFF062CMA.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF608QMW bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF232NLC, ENCFF854DIW, ENCFF946WAV 6155642 ENCODE Processing Pipeline 0bfc270ba628d95bc94138f152ec0045 https://www.encodeproject.org/files/ENCFF608QMW/@@download/ENCFF608QMW.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF785NTC bed narrowPeak optimal idr thresholded peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF022OYE, ENCFF062CMA, ENCFF419RSJ, ENCFF608QMW 1333967 ENCODE Processing Pipeline 892f4b850dff9fb7aa09d2ebbc4e84ba https://www.encodeproject.org/files/ENCFF785NTC/@@download/ENCFF785NTC.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF002CFA bed narrowPeak optimal idr thresholded peaks ENCSR000ALJ ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1002547 ENCODE Consortium Analysis Working Group 0b8ed5c1130c96aa67c6526163d17951 https://www.encodeproject.org/files/ENCFF002CFA/@@download/ENCFF002CFA.bed.gz hg19 archived mild to moderate bottlenecking, low read length missing derived_from insufficient read depth extremely low read depth ENCFF702GWV bed narrowPeak peaks ENCSR876UZD ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 3 1 ENCFF214ROK, ENCFF754GCT 734115 Tim Reddy, Duke d379b250aa29b22c182e3a787fc4e378 https://www.encodeproject.org/files/ENCFF702GWV/@@download/ENCFF702GWV.bed.gz GRCh38 released ENCFF921XYL bed narrowPeak peaks ENCSR876UZD ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 2 1 ENCFF127COG, ENCFF759RVV 758177 Tim Reddy, Duke abac8f2e3ee63f812ca4e115aa2724ab https://www.encodeproject.org/files/ENCFF921XYL/@@download/ENCFF921XYL.bed.gz GRCh38 released ENCFF407DRV bed narrowPeak peaks ENCSR336VBV ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 3 1 ENCFF382CPK, ENCFF782LQS 793859 Tim Reddy, Duke 0843676805ae127b831a5869d3f485b1 https://www.encodeproject.org/files/ENCFF407DRV/@@download/ENCFF407DRV.bed.gz GRCh38 released ENCFF893EPT bed narrowPeak peaks ENCSR336VBV ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 2 1 ENCFF069PUL, ENCFF997XYH 598853 Tim Reddy, Duke 7e70335713a6958ab93043b809495d8b https://www.encodeproject.org/files/ENCFF893EPT/@@download/ENCFF893EPT.bed.gz GRCh38 released ENCFF334WKT bed narrowPeak peaks ENCSR336VBV ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF211SRS, ENCFF527UXJ 805531 Tim Reddy, Duke c9d98b543c056448e2c069176e841d15 https://www.encodeproject.org/files/ENCFF334WKT/@@download/ENCFF334WKT.bed.gz GRCh38 released ENCFF001VQX bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 708294 Michael Snyder, Stanford 7a2f0bf6b17a58cf1323eafca3620824 https://www.encodeproject.org/files/ENCFF001VQX/@@download/ENCFF001VQX.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF310CHY bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF973FUN 4891506 ENCODE Processing Pipeline fd37992521dc7b9fefd16b6be5b8a1e7 https://www.encodeproject.org/files/ENCFF310CHY/@@download/ENCFF310CHY.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF640OIF bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF282PXC, ENCFF430DOC, ENCFF973FUN 5275998 ENCODE Processing Pipeline faaf6856476587828640fb5bb85da691 https://www.encodeproject.org/files/ENCFF640OIF/@@download/ENCFF640OIF.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF241SRR bed narrowPeak conservative idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF310CHY, ENCFF419RSJ, ENCFF640OIF, ENCFF679FHL 815784 ENCODE Processing Pipeline b7cef829929cd553e2240ce71c296690 https://www.encodeproject.org/files/ENCFF241SRR/@@download/ENCFF241SRR.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF540DWT bed narrowPeak optimal idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF310CHY, ENCFF419RSJ, ENCFF640OIF, ENCFF679FHL 883745 ENCODE Processing Pipeline 400c814ed87043db0c2602ebcab39556 https://www.encodeproject.org/files/ENCFF540DWT/@@download/ENCFF540DWT.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF679FHL bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF430DOC 4507986 ENCODE Processing Pipeline d85fffc3082c57c603ee640693661ddc https://www.encodeproject.org/files/ENCFF679FHL/@@download/ENCFF679FHL.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF960NKG bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP 4508906 ENCODE Processing Pipeline 06a8d9a3d2379245714e0e572d416e4d https://www.encodeproject.org/files/ENCFF960NKG/@@download/ENCFF960NKG.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF079HZU bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP, ENCFF898GKX 5276906 ENCODE Processing Pipeline a71cc5fc2d1bd765521fcaa406699105 https://www.encodeproject.org/files/ENCFF079HZU/@@download/ENCFF079HZU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF781THQ bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF666ZPP, ENCFF898GKX 4888991 ENCODE Processing Pipeline 61add53be443cca89b2fa618eb62f339 https://www.encodeproject.org/files/ENCFF781THQ/@@download/ENCFF781THQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF172EHT bed narrowPeak conservative idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF079HZU, ENCFF781THQ, ENCFF960NKG 814005 ENCODE Processing Pipeline 7e8105e3de399b45ce24f6bbed49069a https://www.encodeproject.org/files/ENCFF172EHT/@@download/ENCFF172EHT.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF861DPF bed narrowPeak optimal idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF079HZU, ENCFF781THQ, ENCFF960NKG 888678 ENCODE Processing Pipeline 2669e0f55968e04ed42440428a06c9df https://www.encodeproject.org/files/ENCFF861DPF/@@download/ENCFF861DPF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF002CLT bed narrowPeak optimal idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 223604 ENCODE Consortium Analysis Working Group be3ab73eefd11e9244d32e5ff3f9e878 https://www.encodeproject.org/files/ENCFF002CLT/@@download/ENCFF002CLT.bed.gz hg19 archived moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF036DBK bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 1 ENCFF454MMY 1665736 ENCODE Processing Pipeline 3fce9268c8cc973914edfc7dd81b2b3f https://www.encodeproject.org/files/ENCFF036DBK/@@download/ENCFF036DBK.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking ENCFF943BRX bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310MOR 3851100 ENCODE Processing Pipeline d02cbd0eb2e02c428d530666e0d72eb9 https://www.encodeproject.org/files/ENCFF943BRX/@@download/ENCFF943BRX.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking ENCFF081QMM bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310MOR, ENCFF454MMY 4200248 ENCODE Processing Pipeline 757833ea1c24a80ef783e81e28aa707b https://www.encodeproject.org/files/ENCFF081QMM/@@download/ENCFF081QMM.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking ENCFF653WEF bed narrowPeak conservative idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036DBK, ENCFF081QMM, ENCFF419RSJ, ENCFF943BRX 177236 ENCODE Processing Pipeline de17ec2cde176b415fa6a7cade839301 https://www.encodeproject.org/files/ENCFF653WEF/@@download/ENCFF653WEF.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking ENCFF678TFE bed narrowPeak optimal idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036DBK, ENCFF081QMM, ENCFF419RSJ, ENCFF943BRX 217116 ENCODE Processing Pipeline 52cf0413173f65ad29804dc0a8b17381 https://www.encodeproject.org/files/ENCFF678TFE/@@download/ENCFF678TFE.bed.gz GRCh38 released moderate library complexity, borderline replicate concordance, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking ENCFF001USB bed narrowPeak peaks ENCSR000DKL ChIP-seq CL:0002620 skin fibroblast primary cell child female 10 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1251268 Vishwanath Iyer, UTA a96e9f71210ee3c26b25b88cbd17ea77 https://www.encodeproject.org/files/ENCFF001USB/@@download/ENCFF001USB.bed.gz hg19 released biological replicates with identical biosample, mismatched status, missing raw data in replicate, missing derived_from ENCFF002DAF bed narrowPeak optimal idr thresholded peaks ENCSR000DKL ChIP-seq CL:0002620 skin fibroblast primary cell child female 10 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1044079 ENCODE Consortium Analysis Working Group 2f6d145f23e5f3e57f5e56f6e7027931 https://www.encodeproject.org/files/ENCFF002DAF/@@download/ENCFF002DAF.bed.gz hg19 released biological replicates with identical biosample, mismatched status, missing raw data in replicate, missing derived_from ENCFF002CDN bed narrowPeak optimal idr thresholded peaks ENCSR000AQU ChIP-seq EFO:0007074 DND-41 immortalized cell line child male 13 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-03-06 ENCODE 988273 ENCODE Consortium Analysis Working Group 8bdb862fa383b56d31bc25910d409bed https://www.encodeproject.org/files/ENCFF002CDN/@@download/ENCFF002CDN.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF022XJU bed narrowPeak peaks ENCSR000AQU ChIP-seq EFO:0007074 DND-41 immortalized cell line child male 13 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-03-06 ENCODE 1 ENCFF473RMK, ENCFF520YRJ, ENCFF531LXG 5676253 ENCODE Processing Pipeline 11085516d937732ca483db55997b7011 https://www.encodeproject.org/files/ENCFF022XJU/@@download/ENCFF022XJU.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF066WZP bed narrowPeak peaks ENCSR000AQU ChIP-seq EFO:0007074 DND-41 immortalized cell line child male 13 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF473RMK, ENCFF520YRJ, ENCFF531LXG, ENCFF596DJC 5799653 ENCODE Processing Pipeline 75cda16af7a801cc561187e8f174d01a https://www.encodeproject.org/files/ENCFF066WZP/@@download/ENCFF066WZP.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF635PFS bed narrowPeak peaks ENCSR000AQU ChIP-seq EFO:0007074 DND-41 immortalized cell line child male 13 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-03-06 ENCODE 2 ENCFF520YRJ, ENCFF531LXG, ENCFF596DJC 1768546 ENCODE Processing Pipeline 15ff096e2f06633707383f769e7633b7 https://www.encodeproject.org/files/ENCFF635PFS/@@download/ENCFF635PFS.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF239TCZ bed narrowPeak conservative idr thresholded peaks ENCSR000AQU ChIP-seq EFO:0007074 DND-41 immortalized cell line child male 13 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF022XJU, ENCFF066WZP, ENCFF419RSJ, ENCFF635PFS 591688 ENCODE Processing Pipeline ec5e468a8b42ba3792e960e3d0f2f900 https://www.encodeproject.org/files/ENCFF239TCZ/@@download/ENCFF239TCZ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF805VCP bed narrowPeak optimal idr thresholded peaks ENCSR000AQU ChIP-seq EFO:0007074 DND-41 immortalized cell line child male 13 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF022XJU, ENCFF066WZP, ENCFF419RSJ, ENCFF635PFS 583476 ENCODE Processing Pipeline de4aa5cb90906b87c80ca803673e25c1 https://www.encodeproject.org/files/ENCFF805VCP/@@download/ENCFF805VCP.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF001XNT bed narrowPeak peaks ENCSR000DRF ChIP-seq EFO:0005339 GM12866 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HCV 729400 John Stamatoyannopoulos, UW 92ca44ab869d3b132a8d5a9e8c40f2f3 https://www.encodeproject.org/files/ENCFF001XNT/@@download/ENCFF001XNT.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample missing possible_controls, insufficient read depth ENCFF001XNU bed narrowPeak peaks ENCSR000DRF ChIP-seq EFO:0005339 GM12866 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HDA 482701 John Stamatoyannopoulos, UW c00750fb5c8347858bdde33cae47f2b3 https://www.encodeproject.org/files/ENCFF001XNU/@@download/ENCFF001XNU.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample missing possible_controls, insufficient read depth ENCFF001XON bed narrowPeak peaks ENCSR000DRL ChIP-seq EFO:0005344 GM12871 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HET 678745 John Stamatoyannopoulos, UW 0516038d8a269abca6aa4eb111c251dd https://www.encodeproject.org/files/ENCFF001XON/@@download/ENCFF001XON.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing possible_controls, insufficient read depth ENCFF001XOO bed narrowPeak peaks ENCSR000DRL ChIP-seq EFO:0005344 GM12871 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HEV 846942 John Stamatoyannopoulos, UW c9f06942c48d5da347ba3451844d21a1 https://www.encodeproject.org/files/ENCFF001XOO/@@download/ENCFF001XOO.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing possible_controls, insufficient read depth ENCFF618DDO bed narrowPeak optimal idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF496NEE, ENCFF762DPO, ENCFF900WDP 896089 ENCODE Processing Pipeline dd513e682e5bfda211bce2fc3140257c https://www.encodeproject.org/files/ENCFF618DDO/@@download/ENCFF618DDO.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF900WDP bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF380JLB, ENCFF980CFV 6748695 ENCODE Processing Pipeline dfdfe4f30e1f0cbf721b7e1793fa82c0 https://www.encodeproject.org/files/ENCFF900WDP/@@download/ENCFF900WDP.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF762DPO bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF632LAG, ENCFF980CFV 6710682 ENCODE Processing Pipeline a3a66b6bd31e940c5fd8b6a3bf81c923 https://www.encodeproject.org/files/ENCFF762DPO/@@download/ENCFF762DPO.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF496NEE bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF380JLB, ENCFF632LAG, ENCFF980CFV 7025650 ENCODE Processing Pipeline 4ec4eaa848d9f403af137a400ce93a2a https://www.encodeproject.org/files/ENCFF496NEE/@@download/ENCFF496NEE.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF621VZQ bed narrowPeak conservative idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF496NEE, ENCFF762DPO, ENCFF900WDP 894879 ENCODE Processing Pipeline 21c09e5ebd2bf496fe9dcc69d43566d4 https://www.encodeproject.org/files/ENCFF621VZQ/@@download/ENCFF621VZQ.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF910YVV bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF265XZZ, ENCFF396QTX 6736937 ENCODE Processing Pipeline 45bbbadb1c2c7f07de426b8b2ac7d77b https://www.encodeproject.org/files/ENCFF910YVV/@@download/ENCFF910YVV.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF496FKH bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF756RTB 6727617 ENCODE Processing Pipeline 12b20cf1ed8da5375a75848e16f4ca6b https://www.encodeproject.org/files/ENCFF496FKH/@@download/ENCFF496FKH.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF761CZS bed narrowPeak conservative idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF496FKH, ENCFF910YVV, ENCFF964BWE 895942 ENCODE Processing Pipeline f66390d829a98ba0b2535c3eb255b6db https://www.encodeproject.org/files/ENCFF761CZS/@@download/ENCFF761CZS.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF372JOV bed narrowPeak optimal idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF496FKH, ENCFF910YVV, ENCFF964BWE 896273 ENCODE Processing Pipeline 16c4bdc137d2b00ef9f77a1acb9d6f86 https://www.encodeproject.org/files/ENCFF372JOV/@@download/ENCFF372JOV.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF964BWE bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells embryonic male unknown Homo sapiens CTCF-human ENCAB000AXU DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF265XZZ, ENCFF396QTX, ENCFF756RTB 7002942 ENCODE Processing Pipeline c5f29a4c1e44ebcfdd120b45ccf87961 https://www.encodeproject.org/files/ENCFF964BWE/@@download/ENCFF964BWE.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF001XOB bed narrowPeak peaks ENCSR000DRI ChIP-seq EFO:0005341 GM12868 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HDO 725085 John Stamatoyannopoulos, UW 62cd498b5c1ee6da819e7469a07474cd https://www.encodeproject.org/files/ENCFF001XOB/@@download/ENCFF001XOB.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing possible_controls, insufficient read depth ENCFF001XOC bed narrowPeak peaks ENCSR000DRI ChIP-seq EFO:0005341 GM12868 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HDP 464737 John Stamatoyannopoulos, UW 63c086805f0289f60e242fc41aaa2659 https://www.encodeproject.org/files/ENCFF001XOC/@@download/ENCFF001XOC.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing possible_controls, insufficient read depth ENCFF001XQL bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HLP 772867 John Stamatoyannopoulos, UW faa325fa72bc1c6e7f185585149f625a https://www.encodeproject.org/files/ENCFF001XQL/@@download/ENCFF001XQL.bed.gz hg19 archived low read depth, low read length ENCFF001XQM bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HLO 632186 John Stamatoyannopoulos, UW 2d732a8daebf71f3cd527787a2327939 https://www.encodeproject.org/files/ENCFF001XQM/@@download/ENCFF001XQM.bed.gz hg19 archived low read depth, low read length ENCFF002DCT bed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HLO, ENCFF001HLP 1029268 ENCODE Consortium Analysis Working Group ac9c4f461d11122b8f3cf90373558794 https://www.encodeproject.org/files/ENCFF002DCT/@@download/ENCFF002DCT.bed.gz hg19 archived low read depth, low read length ENCFF988DJT bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF052OHY, ENCFF289VTR 4046478 ENCODE Processing Pipeline 841040790c05ee2cf51325df54a9716d https://www.encodeproject.org/files/ENCFF988DJT/@@download/ENCFF988DJT.bed.gz hg19 released low read depth, low read length ENCFF944AQH bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF040CVQ, ENCFF648CAE 4020175 ENCODE Processing Pipeline c96dc8eea9b757d5cae3d21a28fa7dca https://www.encodeproject.org/files/ENCFF944AQH/@@download/ENCFF944AQH.bed.gz GRCh38 released low read depth, low read length ENCFF876YXB bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF040CVQ, ENCFF091ODJ, ENCFF648CAE 4546295 ENCODE Processing Pipeline ded847c822ff7c6864c5688daec90ac3 https://www.encodeproject.org/files/ENCFF876YXB/@@download/ENCFF876YXB.bed.gz GRCh38 released low read depth, low read length ENCFF562WIV bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF040CVQ, ENCFF091ODJ 4047805 ENCODE Processing Pipeline 267f403d145584009bf62408238541f1 https://www.encodeproject.org/files/ENCFF562WIV/@@download/ENCFF562WIV.bed.gz GRCh38 released low read depth, low read length ENCFF655DUF bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF052OHY, ENCFF322EWR 4031483 ENCODE Processing Pipeline 30d8f79a3f78539e4dad8986a315e5c9 https://www.encodeproject.org/files/ENCFF655DUF/@@download/ENCFF655DUF.bed.gz hg19 released low read depth, low read length ENCFF498JUY bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF052OHY, ENCFF289VTR, ENCFF322EWR 4555950 ENCODE Processing Pipeline 71c416cbbf2a5f52bcc1994130c58e78 https://www.encodeproject.org/files/ENCFF498JUY/@@download/ENCFF498JUY.bed.gz hg19 released low read depth, low read length ENCFF850PKJ bed narrowPeak conservative idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF562WIV, ENCFF876YXB, ENCFF944AQH 772741 ENCODE Processing Pipeline 1d4b95f2d38eefc52d274a5c1115bc57 https://www.encodeproject.org/files/ENCFF850PKJ/@@download/ENCFF850PKJ.bed.gz GRCh38 released low read depth, low read length ENCFF171SNH bed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF562WIV, ENCFF876YXB, ENCFF944AQH 812792 ENCODE Processing Pipeline 7c30b0282011df4c684ff487beab76bc https://www.encodeproject.org/files/ENCFF171SNH/@@download/ENCFF171SNH.bed.gz GRCh38 released low read depth, low read length ENCFF340EDA bed narrowPeak conservative idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF498JUY, ENCFF655DUF, ENCFF988DJT 770606 ENCODE Processing Pipeline 997d517b720ea367ed6fbaab5860bc7e https://www.encodeproject.org/files/ENCFF340EDA/@@download/ENCFF340EDA.bed.gz hg19 released low read depth, low read length ENCFF364QXM bed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF498JUY, ENCFF655DUF, ENCFF988DJT 813755 ENCODE Processing Pipeline 28ab0b38761553ef323901ac055b31f4 https://www.encodeproject.org/files/ENCFF364QXM/@@download/ENCFF364QXM.bed.gz hg19 released low read depth, low read length ENCFF001XNX bed narrowPeak peaks ENCSR000DRH ChIP-seq EFO:0005340 GM12867 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HDD 710390 John Stamatoyannopoulos, UW 4066f14a1afee9951c4379561c7f2787 https://www.encodeproject.org/files/ENCFF001XNX/@@download/ENCFF001XNX.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing possible_controls, insufficient read depth ENCFF001XNY bed narrowPeak peaks ENCSR000DRH ChIP-seq EFO:0005340 GM12867 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HDM 438986 John Stamatoyannopoulos, UW ca7cb7fb64b861e2669e172aee1122f4 https://www.encodeproject.org/files/ENCFF001XNY/@@download/ENCFF001XNY.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length missing possible_controls, insufficient read depth ENCFF846CJQ bed narrowPeak peaks ENCSR384KPP ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF631DES, ENCFF823GRU 471740 Tim Reddy, Duke 03889b7c599ac7b8aeb0c8872c55e858 https://www.encodeproject.org/files/ENCFF846CJQ/@@download/ENCFF846CJQ.bed.gz GRCh38 released ENCFF474KCW bed narrowPeak peaks ENCSR384KPP ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 2 1 ENCFF127HJL, ENCFF171YYX 643717 Tim Reddy, Duke 23a3c251ae8627d14a5e1bcab074f2a8 https://www.encodeproject.org/files/ENCFF474KCW/@@download/ENCFF474KCW.bed.gz GRCh38 released ENCFF204VDS bed narrowPeak peaks ENCSR384KPP ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 3 1 ENCFF069WEP, ENCFF298EPS 672046 Tim Reddy, Duke e4628526d363237109d7b2d00fae2328 https://www.encodeproject.org/files/ENCFF204VDS/@@download/ENCFF204VDS.bed.gz GRCh38 released ENCFF531OAI bed narrowPeak peaks ENCSR035OXA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 3 1 ENCFF653HKQ, ENCFF713UMA 652041 Tim Reddy, Duke a197048478c1ec99bd35f9c729d78fff https://www.encodeproject.org/files/ENCFF531OAI/@@download/ENCFF531OAI.bed.gz GRCh38 released ENCFF751UOX bed narrowPeak peaks ENCSR035OXA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 2 1 ENCFF774IBY, ENCFF987XCE 686050 Tim Reddy, Duke edfae461b3df544b421e4645d86cb535 https://www.encodeproject.org/files/ENCFF751UOX/@@download/ENCFF751UOX.bed.gz GRCh38 released ENCFF465EGH bed narrowPeak peaks ENCSR035OXA ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF097CSC, ENCFF810IXF 629370 Tim Reddy, Duke d70e9068e320abcde3cb3ec69790cefa https://www.encodeproject.org/files/ENCFF465EGH/@@download/ENCFF465EGH.bed.gz GRCh38 released ENCFF001UTJ bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1157394 Vishwanath Iyer, UTA 8f64283db264f5c1c21ae25f6526d502 https://www.encodeproject.org/files/ENCFF001UTJ/@@download/ENCFF001UTJ.bed.gz hg19 archived mild to moderate bottlenecking missing derived_from insufficient read depth extremely low read depth ENCFF166TXF bed narrowPeak conservative idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF202BTH, ENCFF306ACX, ENCFF553SJU 339415 ENCODE Processing Pipeline dc8ae19d9f82c88adf9ba2c3429bd824 https://www.encodeproject.org/files/ENCFF166TXF/@@download/ENCFF166TXF.bed.gz hg19 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF694SEF bed narrowPeak optimal idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF202BTH, ENCFF306ACX, ENCFF553SJU 349464 ENCODE Processing Pipeline b1dde7461d8305cdcaa652804ba6b72d https://www.encodeproject.org/files/ENCFF694SEF/@@download/ENCFF694SEF.bed.gz hg19 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF553SJU bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF635ZTX, ENCFF882SRJ, ENCFF896LIL 2305584 ENCODE Processing Pipeline 533f92bb198632e39a3865e1171af381 https://www.encodeproject.org/files/ENCFF553SJU/@@download/ENCFF553SJU.bed.gz hg19 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF306ACX bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF635ZTX, ENCFF882SRJ 839058 ENCODE Processing Pipeline d895e44989811c1f600d9f1c3e6f5865 https://www.encodeproject.org/files/ENCFF306ACX/@@download/ENCFF306ACX.bed.gz hg19 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF139RCX bed narrowPeak optimal idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF144JNX, ENCFF419PER, ENCFF419RSJ, ENCFF962VDE 383443 ENCODE Processing Pipeline bf3bc1cd96e7e764e16490ed52ac2944 https://www.encodeproject.org/files/ENCFF139RCX/@@download/ENCFF139RCX.bed.gz GRCh38 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF202BTH bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF882SRJ, ENCFF896LIL 1250139 ENCODE Processing Pipeline 7eae5414e76070f87f5e76fe0d4984de https://www.encodeproject.org/files/ENCFF202BTH/@@download/ENCFF202BTH.bed.gz hg19 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF962VDE bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF111YZR, ENCFF923ZIK 868884 ENCODE Processing Pipeline dd2268387cd10dca4dee2ca5159c292d https://www.encodeproject.org/files/ENCFF962VDE/@@download/ENCFF962VDE.bed.gz GRCh38 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF281OWZ bed narrowPeak conservative idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF144JNX, ENCFF419PER, ENCFF419RSJ, ENCFF962VDE 368987 ENCODE Processing Pipeline 2eee55ee0452583fe1b65607e043edf5 https://www.encodeproject.org/files/ENCFF281OWZ/@@download/ENCFF281OWZ.bed.gz GRCh38 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF419PER bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF266UHU, ENCFF923ZIK 1328815 ENCODE Processing Pipeline 125e76264db58f9b1c71a1e9c13b07eb https://www.encodeproject.org/files/ENCFF419PER/@@download/ENCFF419PER.bed.gz GRCh38 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF144JNX bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue adult male 27 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF111YZR, ENCFF266UHU, ENCFF923ZIK 2392640 ENCODE Processing Pipeline b67002be420721da4db58493bcae6312 https://www.encodeproject.org/files/ENCFF144JNX/@@download/ENCFF144JNX.bed.gz GRCh38 released mild to moderate bottlenecking insufficient read depth extremely low read depth ENCFF001XSP bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HSM 670740 John Stamatoyannopoulos, UW 51c19667f82b60e6f98247c4100e027e https://www.encodeproject.org/files/ENCFF001XSP/@@download/ENCFF001XSP.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XSQ bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HSO 709699 John Stamatoyannopoulos, UW 930a63c21338dc088e87bc2ebc231136 https://www.encodeproject.org/files/ENCFF001XSQ/@@download/ENCFF001XSQ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DDI bed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HSM, ENCFF001HSO 911539 ENCODE Consortium Analysis Working Group d5a6de4ca1948023ffb73da452400ed2 https://www.encodeproject.org/files/ENCFF002DDI/@@download/ENCFF002DDI.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF439OCI bed narrowPeak conservative idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF005IIT, ENCFF419RSJ, ENCFF645SOL, ENCFF823OGN 746700 ENCODE Processing Pipeline ddb6e75ad8671364c314e82e4efc938b https://www.encodeproject.org/files/ENCFF439OCI/@@download/ENCFF439OCI.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF645SOL bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF150BQN, ENCFF629FKE 4289736 ENCODE Processing Pipeline 0f27715e72c61d2deab6dfbc29852e34 https://www.encodeproject.org/files/ENCFF645SOL/@@download/ENCFF645SOL.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF005IIT bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF537KZX, ENCFF629FKE 3067215 ENCODE Processing Pipeline bf9a83e5c5055cb954ab8df91217be1c https://www.encodeproject.org/files/ENCFF005IIT/@@download/ENCFF005IIT.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF823OGN bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF150BQN, ENCFF537KZX, ENCFF629FKE 4697852 ENCODE Processing Pipeline 67a6053af3a55ea5b24eb330aa0e72aa https://www.encodeproject.org/files/ENCFF823OGN/@@download/ENCFF823OGN.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF032BJW bed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF005IIT, ENCFF419RSJ, ENCFF645SOL, ENCFF823OGN 771874 ENCODE Processing Pipeline 89b79f10075e62775cac787c35ad2109 https://www.encodeproject.org/files/ENCFF032BJW/@@download/ENCFF032BJW.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF883QKB bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF807YUN, ENCFF976BRM 3070972 ENCODE Processing Pipeline 247d21ff9e5c2eea4eddd298ab499308 https://www.encodeproject.org/files/ENCFF883QKB/@@download/ENCFF883QKB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF199ZDU bed narrowPeak conservative idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF232MQQ, ENCFF569PZS, ENCFF883QKB 744327 ENCODE Processing Pipeline 7984eeb5d569b7751e9c9e95c1d44362 https://www.encodeproject.org/files/ENCFF199ZDU/@@download/ENCFF199ZDU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF232MQQ bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF569PMD, ENCFF807YUN 4278177 ENCODE Processing Pipeline e54e5a4b72715fa2cc2debc8c420f6fe https://www.encodeproject.org/files/ENCFF232MQQ/@@download/ENCFF232MQQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF569PZS bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF569PMD, ENCFF807YUN, ENCFF976BRM 4693787 ENCODE Processing Pipeline 9f51e222d4b6bb3ed4a8d60f0acbe397 https://www.encodeproject.org/files/ENCFF569PZS/@@download/ENCFF569PZS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF738CXX bed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF232MQQ, ENCFF569PZS, ENCFF883QKB 768494 ENCODE Processing Pipeline 5a3c9d8e93fc9918892fa2f3ecf1426a https://www.encodeproject.org/files/ENCFF738CXX/@@download/ENCFF738CXX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XPD bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGN 685062 John Stamatoyannopoulos, UW ff0f6bb5b4c9747546ac480a8d194136 https://www.encodeproject.org/files/ENCFF001XPD/@@download/ENCFF001XPD.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XPE bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HGS 748948 John Stamatoyannopoulos, UW f1a2ff887e4b39e4ce138baf528eb617 https://www.encodeproject.org/files/ENCFF001XPE/@@download/ENCFF001XPE.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCK bed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HGN, ENCFF001HGS 728006 ENCODE Consortium Analysis Working Group daec8fe2e58bc51274a177715c9898b6 https://www.encodeproject.org/files/ENCFF002DCK/@@download/ENCFF002DCK.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF354TSL bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412FKY, ENCFF567AIN 3019375 ENCODE Processing Pipeline 6c09779f81837944317faf035842d49e https://www.encodeproject.org/files/ENCFF354TSL/@@download/ENCFF354TSL.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF765UCT bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF412FKY, ENCFF664MCF 2224988 ENCODE Processing Pipeline ca5f87a3a58c9cc39d624a13cea262dd https://www.encodeproject.org/files/ENCFF765UCT/@@download/ENCFF765UCT.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002ZPW bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412FKY, ENCFF567AIN, ENCFF664MCF 4324079 ENCODE Processing Pipeline 7f0b391f75b6408e2c1d76879ec29a2f https://www.encodeproject.org/files/ENCFF002ZPW/@@download/ENCFF002ZPW.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF834WWA bed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002ZPW, ENCFF354TSL, ENCFF419RSJ, ENCFF765UCT 647525 ENCODE Processing Pipeline 246e2f7db34a9c4dab572d230d1af2bd https://www.encodeproject.org/files/ENCFF834WWA/@@download/ENCFF834WWA.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF522MKO bed narrowPeak conservative idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002ZPW, ENCFF354TSL, ENCFF419RSJ, ENCFF765UCT 626481 ENCODE Processing Pipeline f534310f699e6e98412e28c5ed542c20 https://www.encodeproject.org/files/ENCFF522MKO/@@download/ENCFF522MKO.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF653LVL bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF035XEM, ENCFF044UKM, ENCFF331ASK 4319099 ENCODE Processing Pipeline e1b0119d11cc73776f554199a9414e9d https://www.encodeproject.org/files/ENCFF653LVL/@@download/ENCFF653LVL.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF445XBY bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF044UKM, ENCFF331ASK 2213661 ENCODE Processing Pipeline 1adacb413dab633ea043a244efc1c721 https://www.encodeproject.org/files/ENCFF445XBY/@@download/ENCFF445XBY.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF961AGO bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF035XEM, ENCFF331ASK 3061731 ENCODE Processing Pipeline 1286158fe09ccb9c0f1f96eb46c1328a https://www.encodeproject.org/files/ENCFF961AGO/@@download/ENCFF961AGO.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF605AIV bed narrowPeak conservative idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF445XBY, ENCFF653LVL, ENCFF961AGO 625728 ENCODE Processing Pipeline 2f7e8f4ac08f01482a55d026d758f6bc https://www.encodeproject.org/files/ENCFF605AIV/@@download/ENCFF605AIV.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF446MKT bed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF445XBY, ENCFF653LVL, ENCFF961AGO 645559 ENCODE Processing Pipeline 6e25d6e01e8d314d42456184df9c22c7 https://www.encodeproject.org/files/ENCFF446MKT/@@download/ENCFF446MKT.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF281EIU bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF536FQU, ENCFF731XOB, ENCFF834FWS 6800168 ENCODE Processing Pipeline 0fa72eaca56d79631ec62e41fa22699f https://www.encodeproject.org/files/ENCFF281EIU/@@download/ENCFF281EIU.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF729SUL bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF007DGT, ENCFF204KRO, ENCFF290UZX 6771329 ENCODE Processing Pipeline 192d5e5934f5bcbc1c741ab71dea9942 https://www.encodeproject.org/files/ENCFF729SUL/@@download/ENCFF729SUL.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF605AVV bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF514ADB, ENCFF731XOB, ENCFF834FWS 7152526 ENCODE Processing Pipeline c1fc0f72e5501ac7de85470d718bf3ed https://www.encodeproject.org/files/ENCFF605AVV/@@download/ENCFF605AVV.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF962BGL bed narrowPeak conservative idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF281EIU, ENCFF605AVV, ENCFF677QYW 923831 ENCODE Processing Pipeline d9d88683b6b807139f6b5a9ae9c84688 https://www.encodeproject.org/files/ENCFF962BGL/@@download/ENCFF962BGL.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF677QYW bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF514ADB, ENCFF536FQU, ENCFF731XOB, ENCFF834FWS 7158079 ENCODE Processing Pipeline 06154384a321cd6f96481e60d2ed0023 https://www.encodeproject.org/files/ENCFF677QYW/@@download/ENCFF677QYW.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF241JKV bed narrowPeak optimal idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF281EIU, ENCFF605AVV, ENCFF677QYW 930122 ENCODE Processing Pipeline 0a7755c1ba62ad85da95d6f5e7f2a2ad https://www.encodeproject.org/files/ENCFF241JKV/@@download/ENCFF241JKV.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF975HDI bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF007DGT, ENCFF290UZX, ENCFF658FRS 7168049 ENCODE Processing Pipeline 570e0d872e977044c4d8c5714ce7f2de https://www.encodeproject.org/files/ENCFF975HDI/@@download/ENCFF975HDI.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF273HTX bed narrowPeak optimal idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF103EVC, ENCFF419RSJ, ENCFF729SUL, ENCFF975HDI 941592 ENCODE Processing Pipeline 0a0dcaa071c1e853bc19bcbc3c611f51 https://www.encodeproject.org/files/ENCFF273HTX/@@download/ENCFF273HTX.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF103EVC bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF007DGT, ENCFF204KRO, ENCFF290UZX, ENCFF658FRS 7193536 ENCODE Processing Pipeline f601995fc4248842848d375ae3e1ed27 https://www.encodeproject.org/files/ENCFF103EVC/@@download/ENCFF103EVC.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF818GAP bed narrowPeak conservative idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF103EVC, ENCFF419RSJ, ENCFF729SUL, ENCFF975HDI 936538 ENCODE Processing Pipeline 7e72b412e31d0219f5cf06f916d79e9f https://www.encodeproject.org/files/ENCFF818GAP/@@download/ENCFF818GAP.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF955ONX bed narrowPeak peaks ENCSR851SOK ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 2 1 ENCFF312HCW, ENCFF376SOY 748906 Tim Reddy, Duke 6da88ddd03f7458b12838ea334c82888 https://www.encodeproject.org/files/ENCFF955ONX/@@download/ENCFF955ONX.bed.gz GRCh38 released ENCFF165UME bed narrowPeak peaks ENCSR249JOH ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 2 1 ENCFF180EPT, ENCFF222ACA 847692 Tim Reddy, Duke 430d6473d3bd2c8c358e5973fc8feabe https://www.encodeproject.org/files/ENCFF165UME/@@download/ENCFF165UME.bed.gz GRCh38 released ENCFF015XGN bed narrowPeak peaks ENCSR249JOH ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF356NSD, ENCFF639UDD 641895 Tim Reddy, Duke 9e01c9342281519ce45a024db4f2c333 https://www.encodeproject.org/files/ENCFF015XGN/@@download/ENCFF015XGN.bed.gz GRCh38 released ENCFF841ODZ bed narrowPeak peaks ENCSR249JOH ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 3 1 ENCFF193ABY, ENCFF951KQC 870537 Tim Reddy, Duke 07c6ac8ad0601f23a100c083a79aac3b https://www.encodeproject.org/files/ENCFF841ODZ/@@download/ENCFF841ODZ.bed.gz GRCh38 released ENCFF670DTN bed narrowPeak peaks ENCSR287UXS ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF920VEX, ENCFF967IGG 599220 Tim Reddy, Duke bc56a816d6dca1419cb407e9112d76b9 https://www.encodeproject.org/files/ENCFF670DTN/@@download/ENCFF670DTN.bed.gz GRCh38 released ENCFF002CLS bed narrowPeak optimal idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 892491 ENCODE Consortium Analysis Working Group 749db3fdd18af5e96e12683dc67852b6 https://www.encodeproject.org/files/ENCFF002CLS/@@download/ENCFF002CLS.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF349NJE bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF234NVU, ENCFF391HFU, ENCFF691BQZ, ENCFF913HVS 5145036 ENCODE Processing Pipeline 7ae05f4b87eb1b8b16ceaa490a09d31d https://www.encodeproject.org/files/ENCFF349NJE/@@download/ENCFF349NJE.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF667VJC bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 2 ENCFF691BQZ, ENCFF913HVS 4336302 ENCODE Processing Pipeline dda20a17ec0748c3d2c9adee1841e951 https://www.encodeproject.org/files/ENCFF667VJC/@@download/ENCFF667VJC.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF822CTO bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234NVU, ENCFF391HFU 3326942 ENCODE Processing Pipeline df0bd3dad982550d48aed690ce4afe47 https://www.encodeproject.org/files/ENCFF822CTO/@@download/ENCFF822CTO.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF101MTI bed narrowPeak conservative idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF349NJE, ENCFF419RSJ, ENCFF667VJC, ENCFF822CTO 695018 ENCODE Processing Pipeline 5f488b52e2d086ba8f2d1a0a064d3b02 https://www.encodeproject.org/files/ENCFF101MTI/@@download/ENCFF101MTI.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF119XFJ bed narrowPeak optimal idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF349NJE, ENCFF419RSJ, ENCFF667VJC, ENCFF822CTO 801899 ENCODE Processing Pipeline d188231ecd51e08a69f22a2b2faf23f6 https://www.encodeproject.org/files/ENCFF119XFJ/@@download/ENCFF119XFJ.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF002CFK bed narrowPeak optimal idr thresholded peaks ENCSR000BHW ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens ethanol CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 825528 ENCODE Consortium Analysis Working Group 964d37b2f912291bdc3ee387132862c5 https://www.encodeproject.org/files/ENCFF002CFK/@@download/ENCFF002CFK.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF002CEB bed narrowPeak optimal idr thresholded peaks ENCSR000ALV ChIP-seq CL:0002327 mammary epithelial cell primary cell adult female 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 831714 ENCODE Consortium Analysis Working Group 69aea1a9f054a5ff2f3e70205353c619 https://www.encodeproject.org/files/ENCFF002CEB/@@download/ENCFF002CEB.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length missing derived_from insufficient read depth ENCFF641CHY bed narrowPeak peaks ENCSR000ALV ChIP-seq CL:0002327 mammary epithelial cell primary cell adult female 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF440NGA, ENCFF801RTD, ENCFF813ZYQ, ENCFF966DPW 4562835 ENCODE Processing Pipeline 749b6f9ac7af4c67e65630e0d8b5319c https://www.encodeproject.org/files/ENCFF641CHY/@@download/ENCFF641CHY.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF273BYG bed narrowPeak peaks ENCSR000ALV ChIP-seq CL:0002327 mammary epithelial cell primary cell adult female 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1 ENCFF801RTD, ENCFF813ZYQ, ENCFF966DPW 3878316 ENCODE Processing Pipeline 8f94a124b94fe4ff3e832b735c5f2788 https://www.encodeproject.org/files/ENCFF273BYG/@@download/ENCFF273BYG.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF846KPK bed narrowPeak peaks ENCSR000ALV ChIP-seq CL:0002327 mammary epithelial cell primary cell adult female 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 2 ENCFF440NGA, ENCFF801RTD, ENCFF813ZYQ 1570001 ENCODE Processing Pipeline 9ec511d4933b7529845fc235d7d52632 https://www.encodeproject.org/files/ENCFF846KPK/@@download/ENCFF846KPK.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF505MGI bed narrowPeak optimal idr thresholded peaks ENCSR000ALV ChIP-seq CL:0002327 mammary epithelial cell primary cell adult female 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF273BYG, ENCFF419RSJ, ENCFF641CHY, ENCFF846KPK 596244 ENCODE Processing Pipeline 03f68e2cb380d03560e8b3471dc965a3 https://www.encodeproject.org/files/ENCFF505MGI/@@download/ENCFF505MGI.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF207ZRI bed narrowPeak conservative idr thresholded peaks ENCSR000ALV ChIP-seq CL:0002327 mammary epithelial cell primary cell adult female 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF273BYG, ENCFF419RSJ, ENCFF641CHY, ENCFF846KPK 545595 ENCODE Processing Pipeline 843090f7db9d8151eb3920c4be72dc03 https://www.encodeproject.org/files/ENCFF207ZRI/@@download/ENCFF207ZRI.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001UTW bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1126676 Vishwanath Iyer, UTA 622afeb1b860c907cac627b9d9c150be https://www.encodeproject.org/files/ENCFF001UTW/@@download/ENCFF001UTW.bed.gz hg19 archived low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF939PBN bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF291LYW 3682135 ENCODE Processing Pipeline a3a39e91bc593f7a076f5e6191d2d6c9 https://www.encodeproject.org/files/ENCFF939PBN/@@download/ENCFF939PBN.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF652DOH bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF482VWN 3664628 ENCODE Processing Pipeline 1065f5614892bc30c725ff3da2166ced https://www.encodeproject.org/files/ENCFF652DOH/@@download/ENCFF652DOH.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF363BEL bed narrowPeak conservative idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF652DOH, ENCFF928JWJ, ENCFF939PBN 674044 ENCODE Processing Pipeline 3bc6334f645025940ccec10b89f1c40e https://www.encodeproject.org/files/ENCFF363BEL/@@download/ENCFF363BEL.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF928JWJ bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF291LYW, ENCFF482VWN 1623513 ENCODE Processing Pipeline e442a17cc86d80bdfac8da7ccd0c99ae https://www.encodeproject.org/files/ENCFF928JWJ/@@download/ENCFF928JWJ.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF845NAG bed narrowPeak optimal idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF652DOH, ENCFF928JWJ, ENCFF939PBN 697456 ENCODE Processing Pipeline 5938cc121876c7b44b0bf0aef46ecb96 https://www.encodeproject.org/files/ENCFF845NAG/@@download/ENCFF845NAG.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF525QBA bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF023GMN, ENCFF446HAE 3655099 ENCODE Processing Pipeline 2cca84b4e022702c1ccf58715598d44f https://www.encodeproject.org/files/ENCFF525QBA/@@download/ENCFF525QBA.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF874DDR bed narrowPeak optimal idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF012GOG, ENCFF525QBA, ENCFF550YRO 699291 ENCODE Processing Pipeline 09f2bc62227b28b0550ce5999dd49d02 https://www.encodeproject.org/files/ENCFF874DDR/@@download/ENCFF874DDR.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF012GOG bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF023GMN, ENCFF364YRB 3694904 ENCODE Processing Pipeline 6b4da5dee3c34bbed24a83628e774d40 https://www.encodeproject.org/files/ENCFF012GOG/@@download/ENCFF012GOG.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF550YRO bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF023GMN, ENCFF364YRB, ENCFF446HAE 1625181 ENCODE Processing Pipeline b4baf30ea52ea878b0060cde2f00ad26 https://www.encodeproject.org/files/ENCFF550YRO/@@download/ENCFF550YRO.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF500PGG bed narrowPeak conservative idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma immortalized cell line child male 2 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF012GOG, ENCFF525QBA, ENCFF550YRO 672515 ENCODE Processing Pipeline 6fe9dc5b1e9a77db18babfda1e97fa38 https://www.encodeproject.org/files/ENCFF500PGG/@@download/ENCFF500PGG.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001USH bed narrowPeak peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1311543 Vishwanath Iyer, UTA a6f856eb3742b57cd1515cf4669b620d https://www.encodeproject.org/files/ENCFF001USH/@@download/ENCFF001USH.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002DAJ bed narrowPeak optimal idr thresholded peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 943769 ENCODE Consortium Analysis Working Group f05d542a177ee7a769c68a1f4e553b67 https://www.encodeproject.org/files/ENCFF002DAJ/@@download/ENCFF002DAJ.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF425DIK bed narrowPeak peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF675VOA, ENCFF722MYF 6648174 ENCODE Processing Pipeline 13f679f989bd340e4fbbe544ed089031 https://www.encodeproject.org/files/ENCFF425DIK/@@download/ENCFF425DIK.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF396NYG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF425DIK 484535 ENCODE Processing Pipeline 1d7da83ec4b89e39d9a1ca3f3d11282b https://www.encodeproject.org/files/ENCFF396NYG/@@download/ENCFF396NYG.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF932QYK bed narrowPeak peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF343QUJ, ENCFF543PTH 6613943 ENCODE Processing Pipeline 7b6928f5044c0f7940ffaad60c87e700 https://www.encodeproject.org/files/ENCFF932QYK/@@download/ENCFF932QYK.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF016OGE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF932QYK 476664 ENCODE Processing Pipeline ab5b042dff3a2328e8ad650e21069f37 https://www.encodeproject.org/files/ENCFF016OGE/@@download/ENCFF016OGE.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF929YZA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR341VKC ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF016ECE 415900 ENCODE Processing Pipeline f1ee1d449310c8e6d54aeda68720765c https://www.encodeproject.org/files/ENCFF929YZA/@@download/ENCFF929YZA.bed.gz hg19 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF016ECE bed narrowPeak peaks ENCSR341VKC ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF153PCL, ENCFF822RMX 5637624 ENCODE Processing Pipeline 231f9fb65adf4efecdba66d9f068466d https://www.encodeproject.org/files/ENCFF016ECE/@@download/ENCFF016ECE.bed.gz hg19 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF734LWI bed narrowPeak peaks ENCSR341VKC ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF301NCC, ENCFF324GFZ 5638711 ENCODE Processing Pipeline 5b36c7fa170cba6e09d8ccb245101aee https://www.encodeproject.org/files/ENCFF734LWI/@@download/ENCFF734LWI.bed.gz GRCh38 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF782FTD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR341VKC ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF734LWI 418491 ENCODE Processing Pipeline 187e984d2ccde3013d7e7ea5fd159c03 https://www.encodeproject.org/files/ENCFF782FTD/@@download/ENCFF782FTD.bed.gz GRCh38 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF354MGW bed narrowPeak peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF123STP, ENCFF584NWF 6501029 ENCODE Processing Pipeline 6b428241ad0dc646a3bfb9cd576c1e36 https://www.encodeproject.org/files/ENCFF354MGW/@@download/ENCFF354MGW.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF634DDY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF354MGW 559752 ENCODE Processing Pipeline 7048ade5e7d78ff9a6d707123a5f48af https://www.encodeproject.org/files/ENCFF634DDY/@@download/ENCFF634DDY.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF175QRT bed narrowPeak peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF204QUC, ENCFF990MMF 6540493 ENCODE Processing Pipeline 9aaa706833c75f0985b1ce3fccffadae https://www.encodeproject.org/files/ENCFF175QRT/@@download/ENCFF175QRT.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF866EIC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF175QRT, ENCFF419RSJ 571916 ENCODE Processing Pipeline f425deef9e1e7570c0d155836616573b https://www.encodeproject.org/files/ENCFF866EIC/@@download/ENCFF866EIC.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF733VAF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 2 ENCFF001TDO, ENCFF873BHU 122407 ENCODE Processing Pipeline d127cae97d80326bd6656e62227353fa https://www.encodeproject.org/files/ENCFF733VAF/@@download/ENCFF733VAF.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF873BHU bed narrowPeak peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 2 ENCFF592HGH, ENCFF985JPM 4832031 ENCODE Processing Pipeline 61a2fd11b3639d9c0df47240e44f5e6c https://www.encodeproject.org/files/ENCFF873BHU/@@download/ENCFF873BHU.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF843BCC bed narrowPeak peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 2 ENCFF068GBU, ENCFF868OFG 4834371 ENCODE Processing Pipeline 4e9b9b564607e6d233610408d833b864 https://www.encodeproject.org/files/ENCFF843BCC/@@download/ENCFF843BCC.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF846VQK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 2 ENCFF419RSJ, ENCFF843BCC 116917 ENCODE Processing Pipeline a3f2a715a5b5a1b24df65587b63db29d https://www.encodeproject.org/files/ENCFF846VQK/@@download/ENCFF846VQK.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF333FVM bed narrowPeak peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-19 ENCODE 1 ENCFF725LQV, ENCFF798VAD 6421382 ENCODE Processing Pipeline e2a6e8457cc22006e1706794d3c4662d https://www.encodeproject.org/files/ENCFF333FVM/@@download/ENCFF333FVM.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF522DLJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-19 ENCODE 1 ENCFF001TDO, ENCFF333FVM 431594 ENCODE Processing Pipeline ef4b643af033d691d0255659c1e4f1b0 https://www.encodeproject.org/files/ENCFF522DLJ/@@download/ENCFF522DLJ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF858QSY bed narrowPeak peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-19 ENCODE 1 ENCFF070DUF, ENCFF484UEF 6409989 ENCODE Processing Pipeline 35096fae2a7231d7f9c11dfa34b65512 https://www.encodeproject.org/files/ENCFF858QSY/@@download/ENCFF858QSY.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF006YGI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-19 ENCODE 1 ENCFF419RSJ, ENCFF858QSY 431185 ENCODE Processing Pipeline 175836271f8d7f016796ceec3fbab3db https://www.encodeproject.org/files/ENCFF006YGI/@@download/ENCFF006YGI.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF987VRF bed narrowPeak peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF240WVD, ENCFF877MCP 6556307 ENCODE Processing Pipeline 675cf18322652dc745d98cbba4ba01cc https://www.encodeproject.org/files/ENCFF987VRF/@@download/ENCFF987VRF.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF470NNW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF987VRF 582606 ENCODE Processing Pipeline 23b53d174773a361d53ff9c311ab2029 https://www.encodeproject.org/files/ENCFF470NNW/@@download/ENCFF470NNW.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF934LQZ bed narrowPeak peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF335MCG, ENCFF572VZL 6493556 ENCODE Processing Pipeline 66526a5a9ceb9e9a47c2960731306949 https://www.encodeproject.org/files/ENCFF934LQZ/@@download/ENCFF934LQZ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF350AMQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF934LQZ 562694 ENCODE Processing Pipeline d1404163985e5e9fda90f8a7595949fe https://www.encodeproject.org/files/ENCFF350AMQ/@@download/ENCFF350AMQ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF369LXG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF578ZTX 617338 ENCODE Processing Pipeline bf6a0e6e5a1ae18c432a3f674e9a31ff https://www.encodeproject.org/files/ENCFF369LXG/@@download/ENCFF369LXG.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF578ZTX bed narrowPeak peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF093JHV, ENCFF734BLH 6361168 ENCODE Processing Pipeline bb59892c0f059e6a8a4d0a88b0c5a8dd https://www.encodeproject.org/files/ENCFF578ZTX/@@download/ENCFF578ZTX.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF663YRF bed narrowPeak peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF300VIN, ENCFF302FDA 6371110 ENCODE Processing Pipeline 129f12f63d094f452718d7d72c9784e0 https://www.encodeproject.org/files/ENCFF663YRF/@@download/ENCFF663YRF.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF898JJD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF663YRF 605071 ENCODE Processing Pipeline 36ff6092f366d7ddaf8b95da2a335701 https://www.encodeproject.org/files/ENCFF898JJD/@@download/ENCFF898JJD.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF698DYH bed narrowPeak peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF027GOA, ENCFF312ULR 6053666 ENCODE Processing Pipeline b4dae9b1fe658119f852ada3a60b4b10 https://www.encodeproject.org/files/ENCFF698DYH/@@download/ENCFF698DYH.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF985ZJL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF698DYH 553977 ENCODE Processing Pipeline e3878fa26d134e14be951c1c19dc0f31 https://www.encodeproject.org/files/ENCFF985ZJL/@@download/ENCFF985ZJL.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF965ZSY bed narrowPeak peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF403PJI, ENCFF418QRN 6056875 ENCODE Processing Pipeline f050b2ba4e5dd938874ef6b8ca1e252b https://www.encodeproject.org/files/ENCFF965ZSY/@@download/ENCFF965ZSY.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF174CEI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF965ZSY 559262 ENCODE Processing Pipeline 8489c840d566ed663aad7e5a242ef5c9 https://www.encodeproject.org/files/ENCFF174CEI/@@download/ENCFF174CEI.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF396TUD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF518NZX 581382 ENCODE Processing Pipeline f10945ebcc44d3cad7317e7004c0616e https://www.encodeproject.org/files/ENCFF396TUD/@@download/ENCFF396TUD.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF518NZX bed narrowPeak peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF577BMV, ENCFF634EFZ 6113160 ENCODE Processing Pipeline e92d03e16994aeef7e8dc54222eedb18 https://www.encodeproject.org/files/ENCFF518NZX/@@download/ENCFF518NZX.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF540DVR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF250RMB, ENCFF419RSJ 580377 ENCODE Processing Pipeline 4f4b2fd5309439f66a3ea30cd6d695c2 https://www.encodeproject.org/files/ENCFF540DVR/@@download/ENCFF540DVR.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF250RMB bed narrowPeak peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF015XKO, ENCFF702GSO 6092883 ENCODE Processing Pipeline c25c27b9f606183aef885867265f6846 https://www.encodeproject.org/files/ENCFF250RMB/@@download/ENCFF250RMB.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF856ZCX bed narrowPeak peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF492MLX, ENCFF653KEU 6434619 ENCODE Processing Pipeline 2991024c9bb5f14ee8b65fdc0d7278af https://www.encodeproject.org/files/ENCFF856ZCX/@@download/ENCFF856ZCX.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF045AYR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF001TDO, ENCFF856ZCX 623703 ENCODE Processing Pipeline e362a3c04e816689618621968673bdf7 https://www.encodeproject.org/files/ENCFF045AYR/@@download/ENCFF045AYR.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF943XYS bed narrowPeak peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF206AIY, ENCFF444NCW 6451777 ENCODE Processing Pipeline 44442046d3bf0d58d97b65bf63b10884 https://www.encodeproject.org/files/ENCFF943XYS/@@download/ENCFF943XYS.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF973KKY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF419RSJ, ENCFF943XYS 634343 ENCODE Processing Pipeline ae1739828113549c6dc36dc3cc8fda42 https://www.encodeproject.org/files/ENCFF973KKY/@@download/ENCFF973KKY.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001XPH bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGZ 787042 John Stamatoyannopoulos, UW f11b3a03feb68926d56833f0ccdc185b https://www.encodeproject.org/files/ENCFF001XPH/@@download/ENCFF001XPH.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XPI bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHA 544011 John Stamatoyannopoulos, UW 8ff0ac43097610e612420463de007152 https://www.encodeproject.org/files/ENCFF001XPI/@@download/ENCFF001XPI.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCL bed narrowPeak optimal idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HGZ, ENCFF001HHA 842741 ENCODE Consortium Analysis Working Group 07bb4f85501f023a001441bc56e9184d https://www.encodeproject.org/files/ENCFF002DCL/@@download/ENCFF002DCL.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF852LHB bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF182XEA, ENCFF360WOG, ENCFF913KQZ 4203756 ENCODE Processing Pipeline 1b281d589db433f3659beacd7d0130c3 https://www.encodeproject.org/files/ENCFF852LHB/@@download/ENCFF852LHB.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF481CRQ bed narrowPeak conservative idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF046FAZ, ENCFF737TLI, ENCFF852LHB 544527 ENCODE Processing Pipeline a1315a87312c047089f9d24d78ed25df https://www.encodeproject.org/files/ENCFF481CRQ/@@download/ENCFF481CRQ.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF737TLI bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF182XEA, ENCFF913KQZ 3247552 ENCODE Processing Pipeline e700f729e1a480aacaccfa7ace1dd918 https://www.encodeproject.org/files/ENCFF737TLI/@@download/ENCFF737TLI.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF046FAZ bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF182XEA, ENCFF360WOG 2503847 ENCODE Processing Pipeline fa4e3d0f2e1435f5c31e8e90d090f8c6 https://www.encodeproject.org/files/ENCFF046FAZ/@@download/ENCFF046FAZ.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF733YSO bed narrowPeak optimal idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF046FAZ, ENCFF737TLI, ENCFF852LHB 648391 ENCODE Processing Pipeline d2404a9f8ac0a0b865ac97ec3f6460e4 https://www.encodeproject.org/files/ENCFF733YSO/@@download/ENCFF733YSO.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XMG bed narrowPeak peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXX 776832 John Stamatoyannopoulos, UW ef1458cf48d383d368ac8115bfaa0a8b https://www.encodeproject.org/files/ENCFF001XMG/@@download/ENCFF001XMG.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF001XMI bed narrowPeak peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYE 845639 John Stamatoyannopoulos, UW 9d613fc37537831c5d4a421627d5acea https://www.encodeproject.org/files/ENCFF001XMI/@@download/ENCFF001XMI.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF002DBZ bed narrowPeak optimal idr thresholded peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GXX, ENCFF001GYE 993535 ENCODE Consortium Analysis Working Group c3f6929e66ef953454d578c9d2204936 https://www.encodeproject.org/files/ENCFF002DBZ/@@download/ENCFF002DBZ.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF577ZPJ bed narrowPeak peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF085CHA, ENCFF672YBO 4287774 ENCODE Processing Pipeline 1a30f5659161e614549de1addc86ca3b https://www.encodeproject.org/files/ENCFF577ZPJ/@@download/ENCFF577ZPJ.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF905ZWT bed narrowPeak peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF024CIJ, ENCFF085CHA 4378711 ENCODE Processing Pipeline 26bbb841a288b3340f806a0da1aa2162 https://www.encodeproject.org/files/ENCFF905ZWT/@@download/ENCFF905ZWT.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF234EGC bed narrowPeak peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF024CIJ, ENCFF085CHA, ENCFF672YBO 4888757 ENCODE Processing Pipeline 80e10aec6b7e63d450b35d943a4e2ccb https://www.encodeproject.org/files/ENCFF234EGC/@@download/ENCFF234EGC.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF100IYW bed narrowPeak optimal idr thresholded peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF234EGC, ENCFF419RSJ, ENCFF577ZPJ, ENCFF905ZWT 814713 ENCODE Processing Pipeline 339750deb95f31a3d5c2bb4c06980d2d https://www.encodeproject.org/files/ENCFF100IYW/@@download/ENCFF100IYW.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF229WQW bed narrowPeak peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF060TFC, ENCFF068EQL, ENCFF450ZYV 4866150 ENCODE Processing Pipeline c3d8b7c287789e9d8881068bff304f9e https://www.encodeproject.org/files/ENCFF229WQW/@@download/ENCFF229WQW.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF025STW bed narrowPeak peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF060TFC, ENCFF450ZYV 4354501 ENCODE Processing Pipeline da71cb4928d1a417b225bbeb64269fa9 https://www.encodeproject.org/files/ENCFF025STW/@@download/ENCFF025STW.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF934ZVZ bed narrowPeak peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF060TFC, ENCFF068EQL 4346550 ENCODE Processing Pipeline 04397c841d1f7771cf3c71015a08840e https://www.encodeproject.org/files/ENCFF934ZVZ/@@download/ENCFF934ZVZ.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF746CIL bed narrowPeak conservative idr thresholded peaks ENCSR000DPV ChIP-seq CL:2000013 fibroblast of skin of abdomen primary cell adult male 22 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF025STW, ENCFF229WQW, ENCFF934ZVZ 805043 ENCODE Processing Pipeline a854e71bdfcc17eb98e8c2ff896d8bbb https://www.encodeproject.org/files/ENCFF746CIL/@@download/ENCFF746CIL.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF002CDW bed narrowPeak optimal idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1041888 ENCODE Consortium Analysis Working Group b72dd7d21c8e29fbd69c073cfded6de8 https://www.encodeproject.org/files/ENCFF002CDW/@@download/ENCFF002CDW.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length missing derived_from ENCFF001XMC bed narrowPeak peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXP 843481 John Stamatoyannopoulos, UW d61bc0e3408f71f7fcf0c2dd7f4617be https://www.encodeproject.org/files/ENCFF001XMC/@@download/ENCFF001XMC.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF001XME bed narrowPeak peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXR 767870 John Stamatoyannopoulos, UW 54073de26393c7591464492858d7fbba https://www.encodeproject.org/files/ENCFF001XME/@@download/ENCFF001XME.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF002DBY bed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GXP, ENCFF001GXR 987636 ENCODE Consortium Analysis Working Group 715ea220ec130c9be208be04461c66dc https://www.encodeproject.org/files/ENCFF002DBY/@@download/ENCFF002DBY.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF930JHF bed narrowPeak peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF073RIN, ENCFF278LWC, ENCFF692VVV 4850516 ENCODE Processing Pipeline daf6dacb3ea6fc57238c5cb797a550a9 https://www.encodeproject.org/files/ENCFF930JHF/@@download/ENCFF930JHF.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF070WEI bed narrowPeak peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF073RIN, ENCFF278LWC 4399085 ENCODE Processing Pipeline 77d79aeb161636cc4d893fb233764fdd https://www.encodeproject.org/files/ENCFF070WEI/@@download/ENCFF070WEI.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF451JZY bed narrowPeak peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF073RIN, ENCFF692VVV 4391770 ENCODE Processing Pipeline 4e86bbf78c1e6c79c4d3dde2cae8900c https://www.encodeproject.org/files/ENCFF451JZY/@@download/ENCFF451JZY.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF287RCH bed narrowPeak conservative idr thresholded peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF070WEI, ENCFF419RSJ, ENCFF451JZY, ENCFF930JHF 577512 ENCODE Processing Pipeline 4d506d53690b6dec195c5b53e21ce0f7 https://www.encodeproject.org/files/ENCFF287RCH/@@download/ENCFF287RCH.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF119XBW bed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF070WEI, ENCFF419RSJ, ENCFF451JZY, ENCFF930JHF 639975 ENCODE Processing Pipeline 8a84fc47d1cf5efbded4e4e6703d558b https://www.encodeproject.org/files/ENCFF119XBW/@@download/ENCFF119XBW.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF528DMI bed narrowPeak peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF696BBG, ENCFF812WDD 4401073 ENCODE Processing Pipeline 820fbed7097a8adba626db1c162985ef https://www.encodeproject.org/files/ENCFF528DMI/@@download/ENCFF528DMI.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF949AFF bed narrowPeak peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF263AQI, ENCFF696BBG 4359042 ENCODE Processing Pipeline 6f86a2b9f5b2b6e1f8f5b2500677e505 https://www.encodeproject.org/files/ENCFF949AFF/@@download/ENCFF949AFF.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF053EST bed narrowPeak peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF263AQI, ENCFF696BBG, ENCFF812WDD 4831507 ENCODE Processing Pipeline d7cdae9a562f106b12ccfbf10514071f https://www.encodeproject.org/files/ENCFF053EST/@@download/ENCFF053EST.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF245PXW bed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF053EST, ENCFF528DMI, ENCFF949AFF 631971 ENCODE Processing Pipeline 962745b1d6d487ac2007f2d725ee8996 https://www.encodeproject.org/files/ENCFF245PXW/@@download/ENCFF245PXW.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF312JFX bed narrowPeak conservative idr thresholded peaks ENCSR000DPS ChIP-seq CL:0002552 fibroblast of gingiva primary cell adult female 24 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF053EST, ENCFF528DMI, ENCFF949AFF 576654 ENCODE Processing Pipeline 045e4629eaffb88abafc628741a384a7 https://www.encodeproject.org/files/ENCFF312JFX/@@download/ENCFF312JFX.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF002CNT bed narrowPeak optimal idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D immortalized cell line adult female 54 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 728239 ENCODE Consortium Analysis Working Group b9dfea54d51b2cbafe754f0cff688fb3 https://www.encodeproject.org/files/ENCFF002CNT/@@download/ENCFF002CNT.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF986CUM bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D immortalized cell line adult female 54 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117IWF, ENCFF960JYT 4368560 ENCODE Processing Pipeline 24ebbcac2df7f45c270d780b00ed9e59 https://www.encodeproject.org/files/ENCFF986CUM/@@download/ENCFF986CUM.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF885ILM bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D immortalized cell line adult female 54 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117IWF, ENCFF266NHV, ENCFF960JYT 5100679 ENCODE Processing Pipeline 4b8da86974f2587bc32cbdc5c1debd31 https://www.encodeproject.org/files/ENCFF885ILM/@@download/ENCFF885ILM.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF976NKK bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D immortalized cell line adult female 54 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266NHV, ENCFF960JYT 4626514 ENCODE Processing Pipeline fab28693e6e55f38de5c28abf82d891e https://www.encodeproject.org/files/ENCFF976NKK/@@download/ENCFF976NKK.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF170WYL bed narrowPeak conservative idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D immortalized cell line adult female 54 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF885ILM, ENCFF976NKK, ENCFF986CUM 407725 ENCODE Processing Pipeline ff0679060e2fd7e54f80f5a0780bd548 https://www.encodeproject.org/files/ENCFF170WYL/@@download/ENCFF170WYL.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF903ZMF bed narrowPeak optimal idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D immortalized cell line adult female 54 year Homo sapiens dimethyl sulfoxide CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF885ILM, ENCFF976NKK, ENCFF986CUM 482518 ENCODE Processing Pipeline 765dd9a4fdebd8971d21488e7b273e3a https://www.encodeproject.org/files/ENCFF903ZMF/@@download/ENCFF903ZMF.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF001XSL bed narrowPeak peaks ENCSR000DVP ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HRZ 754654 John Stamatoyannopoulos, UW 76ce12ef7f2893bb2ad1e84de7f354eb https://www.encodeproject.org/files/ENCFF001XSL/@@download/ENCFF001XSL.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XSM bed narrowPeak peaks ENCSR000DVP ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HSA 629632 John Stamatoyannopoulos, UW ee7e7c83b273ca463271254cc27a4f23 https://www.encodeproject.org/files/ENCFF001XSM/@@download/ENCFF001XSM.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DDH bed narrowPeak optimal idr thresholded peaks ENCSR000DVP ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HRZ, ENCFF001HSA 746379 ENCODE Consortium Analysis Working Group b518dcb9baa43e34879b82da1c71a3db https://www.encodeproject.org/files/ENCFF002DDH/@@download/ENCFF002DDH.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF119HQF bed narrowPeak conservative idr thresholded peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 1, 2 ENCFF001TDO, ENCFF263PBF, ENCFF682TFX, ENCFF721XMZ 956803 ENCODE Processing Pipeline 46a96b5c6eeaf91807aa642de8a788ac https://www.encodeproject.org/files/ENCFF119HQF/@@download/ENCFF119HQF.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF263PBF bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 1, 2 ENCFF121VXJ, ENCFF186KYZ, ENCFF829HKP, ENCFF876ZSM 5424258 ENCODE Processing Pipeline 74532065217057f0b6ba5b38e6a21c7f https://www.encodeproject.org/files/ENCFF263PBF/@@download/ENCFF263PBF.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF721XMZ bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 2 ENCFF186KYZ, ENCFF876ZSM 4478670 ENCODE Processing Pipeline bc76f2eab44b0aa0ed65b9105e5c573a https://www.encodeproject.org/files/ENCFF721XMZ/@@download/ENCFF721XMZ.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF682TFX bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 1 ENCFF121VXJ, ENCFF829HKP 4536822 ENCODE Processing Pipeline 898addb82a3a00236f8dd5143bea2588 https://www.encodeproject.org/files/ENCFF682TFX/@@download/ENCFF682TFX.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF693PZH bed narrowPeak optimal idr thresholded peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 1, 2 ENCFF001TDO, ENCFF263PBF, ENCFF682TFX, ENCFF721XMZ 956798 ENCODE Processing Pipeline 204ad61bcdc9e26628e1deafb30a2fed https://www.encodeproject.org/files/ENCFF693PZH/@@download/ENCFF693PZH.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF900CAV bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 2 ENCFF302HOU, ENCFF802YSD 4346402 ENCODE Processing Pipeline 4b8eb3d0b1c635cbe68f6b31a224efe4 https://www.encodeproject.org/files/ENCFF900CAV/@@download/ENCFF900CAV.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF979JFX bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 1 ENCFF389HKQ, ENCFF761LNM 4438714 ENCODE Processing Pipeline d2a2473b35cd1fda5f822b41de2373f1 https://www.encodeproject.org/files/ENCFF979JFX/@@download/ENCFF979JFX.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF810LRZ bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 1, 2 ENCFF302HOU, ENCFF389HKQ, ENCFF761LNM, ENCFF802YSD 5310747 ENCODE Processing Pipeline 5a18df8de13a1b786d78349e409ed453 https://www.encodeproject.org/files/ENCFF810LRZ/@@download/ENCFF810LRZ.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF904CNB bed narrowPeak optimal idr thresholded peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-10-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF810LRZ, ENCFF900CAV, ENCFF979JFX 966706 ENCODE Processing Pipeline d8d35f60b4d608a0884deb085b87c222 https://www.encodeproject.org/files/ENCFF904CNB/@@download/ENCFF904CNB.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking NTR biosample, biological replicates with identical biosample ENCFF001XLR bed narrowPeak peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GVW 971215 John Stamatoyannopoulos, UW 1eb3db60b2fad91ea550972dd9236397 https://www.encodeproject.org/files/ENCFF001XLR/@@download/ENCFF001XLR.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XLS bed narrowPeak peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWC 842901 John Stamatoyannopoulos, UW ef4b0ee3401bb8c942782a4352a20cdd https://www.encodeproject.org/files/ENCFF001XLS/@@download/ENCFF001XLS.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DBV bed narrowPeak optimal idr thresholded peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GVW, ENCFF001GWC 1114889 ENCODE Consortium Analysis Working Group bbcd22b3a0bf72a88a2c3406a71386c6 https://www.encodeproject.org/files/ENCFF002DBV/@@download/ENCFF002DBV.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF252SGK bed narrowPeak peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF083JSC, ENCFF647YII, ENCFF784IKK 2586573 ENCODE Processing Pipeline 272960e49ba861017f1aa83382f7fe89 https://www.encodeproject.org/files/ENCFF252SGK/@@download/ENCFF252SGK.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF671VPQ bed narrowPeak peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF083JSC, ENCFF784IKK 3970636 ENCODE Processing Pipeline 6c79784d63c63948066e481adf2d8f16 https://www.encodeproject.org/files/ENCFF671VPQ/@@download/ENCFF671VPQ.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF738FKM bed narrowPeak peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF083JSC, ENCFF647YII 2224631 ENCODE Processing Pipeline f94b8b4360fdbb9c8dbeb158af2f9890 https://www.encodeproject.org/files/ENCFF738FKM/@@download/ENCFF738FKM.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF970AVM bed narrowPeak conservative idr thresholded peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF252SGK, ENCFF671VPQ, ENCFF738FKM 774670 ENCODE Processing Pipeline f04834aa1a9828e037a2d125449602be https://www.encodeproject.org/files/ENCFF970AVM/@@download/ENCFF970AVM.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF757GIM bed narrowPeak peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF350KMY, ENCFF922HYP 2584722 ENCODE Processing Pipeline be46f1281ffe654e46138f49c16ac084 https://www.encodeproject.org/files/ENCFF757GIM/@@download/ENCFF757GIM.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF550VVD bed narrowPeak peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF922HYP 2221592 ENCODE Processing Pipeline 7882f672c2cfe2acc86b1ce29f5e08f6 https://www.encodeproject.org/files/ENCFF550VVD/@@download/ENCFF550VVD.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF742QXF bed narrowPeak peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF350KMY 3954978 ENCODE Processing Pipeline 73adf2561d0033a8be3b30b262cc4d62 https://www.encodeproject.org/files/ENCFF742QXF/@@download/ENCFF742QXF.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF652LEH bed narrowPeak optimal idr thresholded peaks ENCSR000DPG ChIP-seq CL:2000014 fibroblast of upper leg skin primary cell fetal male 12 week Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF550VVD, ENCFF742QXF, ENCFF757GIM 776154 ENCODE Processing Pipeline 51b1035873c703ba70a16384c1c65d98 https://www.encodeproject.org/files/ENCFF652LEH/@@download/ENCFF652LEH.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001USL bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1110961 Vishwanath Iyer, UTA f278cb91792ef81d2044e690f4f945fb https://www.encodeproject.org/files/ENCFF001USL/@@download/ENCFF001USL.bed.gz hg19 archived borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF552IZR bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF271LZR 3358657 ENCODE Processing Pipeline ec3d87e007b02a3270ebf567a6ad1a3c https://www.encodeproject.org/files/ENCFF552IZR/@@download/ENCFF552IZR.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF601MPV bed narrowPeak optimal idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF398UAW, ENCFF419RSJ, ENCFF471VBX, ENCFF552IZR 533031 ENCODE Processing Pipeline 8e23cdf9ffb2f77956cf23464f1d2c16 https://www.encodeproject.org/files/ENCFF601MPV/@@download/ENCFF601MPV.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF471VBX bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF651CKC 3101948 ENCODE Processing Pipeline 3c1bef153c0f4ae7b8dec5e4c90c3d94 https://www.encodeproject.org/files/ENCFF471VBX/@@download/ENCFF471VBX.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF398UAW bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF271LZR, ENCFF651CKC 3527121 ENCODE Processing Pipeline 204c4b3104da9c397e70f45700ca16ae https://www.encodeproject.org/files/ENCFF398UAW/@@download/ENCFF398UAW.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF075DWD bed narrowPeak conservative idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF398UAW, ENCFF419RSJ, ENCFF471VBX, ENCFF552IZR 395635 ENCODE Processing Pipeline 3b193a820b820af525c300392c1bb5a6 https://www.encodeproject.org/files/ENCFF075DWD/@@download/ENCFF075DWD.bed.gz GRCh38 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF555GZI bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF248LUV, ENCFF841TPD 3319531 ENCODE Processing Pipeline f88c303dbbe59fba376fdc23b7668774 https://www.encodeproject.org/files/ENCFF555GZI/@@download/ENCFF555GZI.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF690YKI bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248LUV, ENCFF841TPD, ENCFF979ICT 3496933 ENCODE Processing Pipeline db1b3896589cfb5e3f0c1addc0ce4971 https://www.encodeproject.org/files/ENCFF690YKI/@@download/ENCFF690YKI.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF756RGK bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF248LUV, ENCFF979ICT 3069932 ENCODE Processing Pipeline 8e407e153852c3c8fea8751f0e4158c4 https://www.encodeproject.org/files/ENCFF756RGK/@@download/ENCFF756RGK.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF431PLW bed narrowPeak conservative idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF555GZI, ENCFF690YKI, ENCFF756RGK 382110 ENCODE Processing Pipeline a6317e62909d93253b4845304bcc8aba https://www.encodeproject.org/files/ENCFF431PLW/@@download/ENCFF431PLW.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF622GQO bed narrowPeak optimal idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF555GZI, ENCFF690YKI, ENCFF756RGK 519232 ENCODE Processing Pipeline 06def2b40abe0c2c60f7a804865ba3f7 https://www.encodeproject.org/files/ENCFF622GQO/@@download/ENCFF622GQO.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF011GSD bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 1 ENCFF113PTE, ENCFF140MOX, ENCFF761NWZ 7009034 ENCODE Processing Pipeline 389d592272571e25cbc0a3b3aa6dead8 https://www.encodeproject.org/files/ENCFF011GSD/@@download/ENCFF011GSD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF166YLC bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 1, 2 ENCFF113PTE, ENCFF140MOX, ENCFF366UNV, ENCFF761NWZ 7067877 ENCODE Processing Pipeline 3c2d51821259c19f415fcab12fc93daa https://www.encodeproject.org/files/ENCFF166YLC/@@download/ENCFF166YLC.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF677GYY bed narrowPeak conservative idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF011GSD, ENCFF166YLC, ENCFF465IOZ 1470473 ENCODE Processing Pipeline 56b37f94c649224d8df538a12d1d14f6 https://www.encodeproject.org/files/ENCFF677GYY/@@download/ENCFF677GYY.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF259XYR bed narrowPeak optimal idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF011GSD, ENCFF166YLC, ENCFF465IOZ 1551773 ENCODE Processing Pipeline 02a67a4ed01b96ee32b7c7c06a2bb4cb https://www.encodeproject.org/files/ENCFF259XYR/@@download/ENCFF259XYR.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF465IOZ bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 2 ENCFF113PTE, ENCFF366UNV, ENCFF761NWZ 7050446 ENCODE Processing Pipeline b37e92be4f3a447e40d01464b356c013 https://www.encodeproject.org/files/ENCFF465IOZ/@@download/ENCFF465IOZ.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF773RMX bed narrowPeak conservative idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 1, 2 ENCFF129NEP, ENCFF297ITF, ENCFF419RSJ, ENCFF809MHX 1477841 ENCODE Processing Pipeline 1f6a3b4e653414a981551c673c5994e9 https://www.encodeproject.org/files/ENCFF773RMX/@@download/ENCFF773RMX.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF809MHX bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 2 ENCFF371TIX, ENCFF483ELD, ENCFF769UET 7152766 ENCODE Processing Pipeline 628e62315faf83f564a7c8faee355f2d https://www.encodeproject.org/files/ENCFF809MHX/@@download/ENCFF809MHX.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF297ITF bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 1, 2 ENCFF371TIX, ENCFF483ELD, ENCFF766RZV, ENCFF769UET 7073559 ENCODE Processing Pipeline 92740c4cfe1241b8754942f2e84207f3 https://www.encodeproject.org/files/ENCFF297ITF/@@download/ENCFF297ITF.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF129NEP bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 1 ENCFF483ELD, ENCFF766RZV, ENCFF769UET 7122093 ENCODE Processing Pipeline 817d9cc816e49feb3906b45f114a22bc https://www.encodeproject.org/files/ENCFF129NEP/@@download/ENCFF129NEP.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF147YCW bed narrowPeak optimal idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens 17β-hydroxy-5α-androstan-3-one CTCF-human ENCAB247TYO DNA False 2017-06-29 ENCODE 1, 2 ENCFF129NEP, ENCFF297ITF, ENCFF419RSJ, ENCFF809MHX 1559193 ENCODE Processing Pipeline 5ee46df8363dba1b15ef262f4b6ba2f8 https://www.encodeproject.org/files/ENCFF147YCW/@@download/ENCFF147YCW.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF001VMZ bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1633362 Michael Snyder, Stanford e3fee0039ab77f91306e2853aafa3005 https://www.encodeproject.org/files/ENCFF001VMZ/@@download/ENCFF001VMZ.bed.gz hg19 archived mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF002CWL bed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1125159 ENCODE Consortium Analysis Working Group 7c774d345a596a6b268fcab76040507a https://www.encodeproject.org/files/ENCFF002CWL/@@download/ENCFF002CWL.bed.gz hg19 archived mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF973WXW bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF488CXC 4799039 ENCODE Processing Pipeline bc4273f7f883ff050b00b56cb922128e https://www.encodeproject.org/files/ENCFF973WXW/@@download/ENCFF973WXW.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF694KDC bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF198CVB 4688825 ENCODE Processing Pipeline fb2ecaaa5017a77872fc0855a617f2bd https://www.encodeproject.org/files/ENCFF694KDC/@@download/ENCFF694KDC.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF175EOP bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF198CVB, ENCFF488CXC 4501560 ENCODE Processing Pipeline 71a317358eef60f6d10dee652ae6db7b https://www.encodeproject.org/files/ENCFF175EOP/@@download/ENCFF175EOP.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF041ODC bed narrowPeak conservative idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF175EOP, ENCFF419RSJ, ENCFF694KDC, ENCFF973WXW 870798 ENCODE Processing Pipeline 0685e5699688caba74c62ee3c87090a9 https://www.encodeproject.org/files/ENCFF041ODC/@@download/ENCFF041ODC.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF396BZQ bed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF175EOP, ENCFF419RSJ, ENCFF694KDC, ENCFF973WXW 912199 ENCODE Processing Pipeline ec6d58713b0306f762dbc4cab091df71 https://www.encodeproject.org/files/ENCFF396BZQ/@@download/ENCFF396BZQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF545EHA bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 2 ENCFF496SZR, ENCFF710NTS 4817312 ENCODE Processing Pipeline f537e875ce6fc4c5e3a7015a07e63207 https://www.encodeproject.org/files/ENCFF545EHA/@@download/ENCFF545EHA.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF264LXL bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF487UYG, ENCFF496SZR, ENCFF710NTS 4182075 ENCODE Processing Pipeline d37764996284c4fb0667c44061e5406b https://www.encodeproject.org/files/ENCFF264LXL/@@download/ENCFF264LXL.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF559HEE bed narrowPeak conservative idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF264LXL, ENCFF545EHA, ENCFF595QHF 866636 ENCODE Processing Pipeline 3f577d118c3c2ae7f868e48972c1ff26 https://www.encodeproject.org/files/ENCFF559HEE/@@download/ENCFF559HEE.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF738TKN bed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF264LXL, ENCFF545EHA, ENCFF595QHF 905102 ENCODE Processing Pipeline 8635b84f3c5785702257302d4b4b8f8a https://www.encodeproject.org/files/ENCFF738TKN/@@download/ENCFF738TKN.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF595QHF bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1 ENCFF487UYG, ENCFF710NTS 4688230 ENCODE Processing Pipeline be40a763bd65492b830c3cf768a541ad https://www.encodeproject.org/files/ENCFF595QHF/@@download/ENCFF595QHF.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF151JWA bed narrowPeak peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF151UNX, ENCFF495PLA 6362684 ENCODE Processing Pipeline 3dba6912abb8409272796714c811bc22 https://www.encodeproject.org/files/ENCFF151JWA/@@download/ENCFF151JWA.bed.gz GRCh38 released experiment not submitted to GEO ENCFF096XNZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF984NYN 454977 ENCODE Processing Pipeline e0997fd8ae820e4b4103d0338e2a86a9 https://www.encodeproject.org/files/ENCFF096XNZ/@@download/ENCFF096XNZ.bed.gz hg19 released experiment not submitted to GEO ENCFF804MOS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF151JWA, ENCFF419RSJ 454788 ENCODE Processing Pipeline e6f044ae15e4f0f88ada8a602a26109e https://www.encodeproject.org/files/ENCFF804MOS/@@download/ENCFF804MOS.bed.gz GRCh38 released experiment not submitted to GEO ENCFF984NYN bed narrowPeak peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF214PDY, ENCFF579HSF 6358819 ENCODE Processing Pipeline 0c2b795df4e4823dabb906d6b529e05d https://www.encodeproject.org/files/ENCFF984NYN/@@download/ENCFF984NYN.bed.gz hg19 released experiment not submitted to GEO ENCFF571PCW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF558ONH 512170 ENCODE Processing Pipeline c913324d411209fe6962c7874cdc844c https://www.encodeproject.org/files/ENCFF571PCW/@@download/ENCFF571PCW.bed.gz hg19 released experiment not submitted to GEO ENCFF363MAG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF382FXA, ENCFF419RSJ 513619 ENCODE Processing Pipeline a7c57efced39302cb7795fc7f76a8ae8 https://www.encodeproject.org/files/ENCFF363MAG/@@download/ENCFF363MAG.bed.gz GRCh38 released experiment not submitted to GEO ENCFF558ONH bed narrowPeak peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF245TKJ, ENCFF937EBV 5355301 ENCODE Processing Pipeline a2c75be92a1492a2e99624038259d179 https://www.encodeproject.org/files/ENCFF558ONH/@@download/ENCFF558ONH.bed.gz hg19 released experiment not submitted to GEO ENCFF382FXA bed narrowPeak peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF742BWH, ENCFF742DCE 5359676 ENCODE Processing Pipeline 79b022c8297a5a7a18e64b4da929eef2 https://www.encodeproject.org/files/ENCFF382FXA/@@download/ENCFF382FXA.bed.gz GRCh38 released experiment not submitted to GEO ENCFF001USP bed narrowPeak peaks ENCSR000DLF ChIP-seq EFO:0002790 GM19240 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1149353 Vishwanath Iyer, UTA ec2da19aaf0112aa496eca7c788a7bb0 https://www.encodeproject.org/files/ENCFF001USP/@@download/ENCFF001USP.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF002DAP bed narrowPeak optimal idr thresholded peaks ENCSR000DLF ChIP-seq EFO:0002790 GM19240 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 887785 ENCODE Consortium Analysis Working Group d6b0fd71bb11380c26a85a7873ab8b7c https://www.encodeproject.org/files/ENCFF002DAP/@@download/ENCFF002DAP.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF001XNE bed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBB 348426 John Stamatoyannopoulos, UW 0937a2f281cf29fb441eb5ebd93fb187 https://www.encodeproject.org/files/ENCFF001XNE/@@download/ENCFF001XNE.bed.gz hg19 released inconsistent mapped reads lengths, missing unfiltered alignments insufficient read length, insufficient read depth ENCFF002DCF bed narrowPeak optimal idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBB 54731 ENCODE Consortium Analysis Working Group 596392705bd0e7954538494d7f40be01 https://www.encodeproject.org/files/ENCFF002DCF/@@download/ENCFF002DCF.bed.gz hg19 released inconsistent mapped reads lengths, missing unfiltered alignments insufficient read length, insufficient read depth ENCFF844FVN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF978PVD 63576 ENCODE Processing Pipeline 369f0e829cf11e6c70b79b05bdcdbe3d https://www.encodeproject.org/files/ENCFF844FVN/@@download/ENCFF844FVN.bed.gz hg19 released inconsistent mapped reads lengths, missing unfiltered alignments insufficient read length, insufficient read depth ENCFF978PVD bed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF277HVR, ENCFF719YWQ 1065559 ENCODE Processing Pipeline 8081abaedd896f40b8d1005cae14d10c https://www.encodeproject.org/files/ENCFF978PVD/@@download/ENCFF978PVD.bed.gz hg19 released inconsistent mapped reads lengths, missing unfiltered alignments insufficient read length, insufficient read depth ENCFF365AIJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419RSJ, ENCFF765ISS 58429 ENCODE Processing Pipeline c47bd66e9dd5918ed45db69f74deeb8a https://www.encodeproject.org/files/ENCFF365AIJ/@@download/ENCFF365AIJ.bed.gz GRCh38 released inconsistent mapped reads lengths, missing unfiltered alignments insufficient read length, insufficient read depth ENCFF765ISS bed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF503DXB, ENCFF572DEU 1045509 ENCODE Processing Pipeline 7c8a7c4c443d45058e51ca12db3fce2f https://www.encodeproject.org/files/ENCFF765ISS/@@download/ENCFF765ISS.bed.gz GRCh38 released inconsistent mapped reads lengths, missing unfiltered alignments insufficient read length, insufficient read depth ENCFF001XQA bed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKB 822894 John Stamatoyannopoulos, UW f9c7d07990d97bbd9a0061243dcbd239 https://www.encodeproject.org/files/ENCFF001XQA/@@download/ENCFF001XQA.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF002DCQ bed narrowPeak optimal idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKB 807242 ENCODE Consortium Analysis Working Group fde7e0859c20ba18cda848aa9ceffad1 https://www.encodeproject.org/files/ENCFF002DCQ/@@download/ENCFF002DCQ.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF344UBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF861NLK 679590 ENCODE Processing Pipeline 756c19bfa7d7c4fd6559b250993d837b https://www.encodeproject.org/files/ENCFF344UBE/@@download/ENCFF344UBE.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF079UMY bed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF708KXW, ENCFF880XKJ 4280668 ENCODE Processing Pipeline 35148d58f533a44ca15b7ae564c2a900 https://www.encodeproject.org/files/ENCFF079UMY/@@download/ENCFF079UMY.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF243AGG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF079UMY, ENCFF419RSJ 690249 ENCODE Processing Pipeline 659b12437d79a0d5a6dbba62cac2915b https://www.encodeproject.org/files/ENCFF243AGG/@@download/ENCFF243AGG.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF861NLK bed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419FEJ, ENCFF661ZEZ 4247467 ENCODE Processing Pipeline f2002e90a4db1e594fac6262f148c6e4 https://www.encodeproject.org/files/ENCFF861NLK/@@download/ENCFF861NLK.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF001USO bed narrowPeak peaks ENCSR000DLE ChIP-seq EFO:0002789 GM19239 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1384117 Vishwanath Iyer, UTA 12e1b7e9a3f42051505faad4dcc6d71b https://www.encodeproject.org/files/ENCFF001USO/@@download/ENCFF001USO.bed.gz hg19 archived low read depth, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF002DAO bed narrowPeak optimal idr thresholded peaks ENCSR000DLE ChIP-seq EFO:0002789 GM19239 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 783054 ENCODE Consortium Analysis Working Group d95fe79a0f56bda488beee0ef74e5fcd https://www.encodeproject.org/files/ENCFF002DAO/@@download/ENCFF002DAO.bed.gz hg19 archived low read depth, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF001XSZ bed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 immortalized cell line adult female 23 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUI 735831 John Stamatoyannopoulos, UW 3fa9131f818463a639f99a3a80fc74a0 https://www.encodeproject.org/files/ENCFF001XSZ/@@download/ENCFF001XSZ.bed.gz hg19 archived low read depth, low read length ENCFF002DDL bed narrowPeak optimal idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 immortalized cell line adult female 23 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUI 726401 ENCODE Consortium Analysis Working Group 8424eaf10728844d829f289c279d647d https://www.encodeproject.org/files/ENCFF002DDL/@@download/ENCFF002DDL.bed.gz hg19 archived low read depth, low read length ENCFF407MVV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 immortalized cell line adult female 23 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001TDO, ENCFF049FHU 614549 ENCODE Processing Pipeline 09d559f3552d29d0d40df6440e85c305 https://www.encodeproject.org/files/ENCFF407MVV/@@download/ENCFF407MVV.bed.gz hg19 released low read depth, low read length ENCFF456PDQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 immortalized cell line adult female 23 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF419RSJ, ENCFF565MGR 637141 ENCODE Processing Pipeline 13030b135fad7ad9d9391e55f741cdcc https://www.encodeproject.org/files/ENCFF456PDQ/@@download/ENCFF456PDQ.bed.gz GRCh38 released low read depth, low read length ENCFF565MGR bed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 immortalized cell line adult female 23 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF116ICU, ENCFF312FHK 4356348 ENCODE Processing Pipeline 07393734d801b63a26f8d9627ecd4935 https://www.encodeproject.org/files/ENCFF565MGR/@@download/ENCFF565MGR.bed.gz GRCh38 released low read depth, low read length ENCFF049FHU bed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 immortalized cell line adult female 23 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF010VRA, ENCFF522BQD 4293374 ENCODE Processing Pipeline edcc1b894b2997953c0901cfac670f49 https://www.encodeproject.org/files/ENCFF049FHU/@@download/ENCFF049FHU.bed.gz hg19 released low read depth, low read length ENCFF749ROX bed narrowPeak peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF716USG, ENCFF941RBT 6757803 ENCODE Processing Pipeline da994bad281aa7d2a9a58d49c59a1699 https://www.encodeproject.org/files/ENCFF749ROX/@@download/ENCFF749ROX.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF985OZU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF749ROX 551277 ENCODE Processing Pipeline 84c26db4eba0b747753dc050e93cb523 https://www.encodeproject.org/files/ENCFF985OZU/@@download/ENCFF985OZU.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF100SKI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF106ONT, ENCFF419RSJ 550916 ENCODE Processing Pipeline 8b5dca38d0f33e2a732fcd316e99ca96 https://www.encodeproject.org/files/ENCFF100SKI/@@download/ENCFF100SKI.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF106ONT bed narrowPeak peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF436WOY, ENCFF719VPI 6743993 ENCODE Processing Pipeline bea15d20df73181bfe5ebe57be4ea431 https://www.encodeproject.org/files/ENCFF106ONT/@@download/ENCFF106ONT.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF877QMQ bed narrowPeak peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF370DPP, ENCFF403WUZ 6430493 ENCODE Processing Pipeline cbce1ae827e70b00ddb3b8346d602677 https://www.encodeproject.org/files/ENCFF877QMQ/@@download/ENCFF877QMQ.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF003YLJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF877QMQ 370690 ENCODE Processing Pipeline ff5cd00df1ba8abf45115f40b9fb5b84 https://www.encodeproject.org/files/ENCFF003YLJ/@@download/ENCFF003YLJ.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF248QUD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF882NVP 371183 ENCODE Processing Pipeline 80f48517315dfe39b6958947d99bfe26 https://www.encodeproject.org/files/ENCFF248QUD/@@download/ENCFF248QUD.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF882NVP bed narrowPeak peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF376BTL, ENCFF903NKV 6434271 ENCODE Processing Pipeline 785b4cacd8b5b0365427835bfc58984d https://www.encodeproject.org/files/ENCFF882NVP/@@download/ENCFF882NVP.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF249NQH bed narrowPeak peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF376VVJ, ENCFF460MTF 6701374 ENCODE Processing Pipeline 8df7318798834bbce0ce98192ccbd380 https://www.encodeproject.org/files/ENCFF249NQH/@@download/ENCFF249NQH.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status ENCFF637HAC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF249NQH 472059 ENCODE Processing Pipeline 7fb333c78f555b43e1243b1d146b7dbe https://www.encodeproject.org/files/ENCFF637HAC/@@download/ENCFF637HAC.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status ENCFF173WQR bed narrowPeak peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF414EUV, ENCFF978YES 6738191 ENCODE Processing Pipeline 6d126050fbac5f3b8ce18211480d4ab2 https://www.encodeproject.org/files/ENCFF173WQR/@@download/ENCFF173WQR.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status ENCFF668SIT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF173WQR, ENCFF419RSJ 486179 ENCODE Processing Pipeline e13e028083fd5b852426a547d77911d4 https://www.encodeproject.org/files/ENCFF668SIT/@@download/ENCFF668SIT.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status ENCFF001XTV bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXH 926574 John Stamatoyannopoulos, UW d8ab7dcdd22ed428a6c1d8cf296dffc5 https://www.encodeproject.org/files/ENCFF001XTV/@@download/ENCFF001XTV.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XTW bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXM 914739 John Stamatoyannopoulos, UW 1564f3e09164f441c6b6b87d8aaf9dd8 https://www.encodeproject.org/files/ENCFF001XTW/@@download/ENCFF001XTW.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DDR bed narrowPeak optimal idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HXH, ENCFF001HXM 1039198 ENCODE Consortium Analysis Working Group 6801e70f2927cea7c72e99d45ebc7727 https://www.encodeproject.org/files/ENCFF002DDR/@@download/ENCFF002DDR.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF359EWI bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF328BRW, ENCFF998ZWT 2661982 ENCODE Processing Pipeline 0c8d8b15f79694ccea73ca291bcbd773 https://www.encodeproject.org/files/ENCFF359EWI/@@download/ENCFF359EWI.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF806CSP bed narrowPeak conservative idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF020JUP, ENCFF359EWI, ENCFF655SOH 782618 ENCODE Processing Pipeline c2a7faad07fd3848e8ae61fd15727ed6 https://www.encodeproject.org/files/ENCFF806CSP/@@download/ENCFF806CSP.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF316NHY bed narrowPeak optimal idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF020JUP, ENCFF359EWI, ENCFF655SOH 815709 ENCODE Processing Pipeline 84970e70aa32e04a1ed816bdb3e001b6 https://www.encodeproject.org/files/ENCFF316NHY/@@download/ENCFF316NHY.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF655SOH bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF328BRW, ENCFF823NFU 2728211 ENCODE Processing Pipeline a0247abb24ee37b1c64e2a77ebf176ee https://www.encodeproject.org/files/ENCFF655SOH/@@download/ENCFF655SOH.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF020JUP bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF328BRW, ENCFF823NFU, ENCFF998ZWT 4397241 ENCODE Processing Pipeline 42b2eb6c13e1e7a154c8f10922a9f1e8 https://www.encodeproject.org/files/ENCFF020JUP/@@download/ENCFF020JUP.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF430DVP bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1 ENCFF139XSQ, ENCFF927WZT, ENCFF959AJO 5251909 ENCODE Processing Pipeline dd29ab82ef96d4b066fb6e1b987ac9af https://www.encodeproject.org/files/ENCFF430DVP/@@download/ENCFF430DVP.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF942TCG bed narrowPeak optimal idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF430DVP, ENCFF483SPH, ENCFF889OQM 909194 ENCODE Processing Pipeline df8e06eabcef14bb91558c96f28066d6 https://www.encodeproject.org/files/ENCFF942TCG/@@download/ENCFF942TCG.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF444IOW bed narrowPeak conservative idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF664CSQ, ENCFF762LDF, ENCFF768KKE 877515 ENCODE Processing Pipeline 8776eae2fba762ef78261a690b14b4e8 https://www.encodeproject.org/files/ENCFF444IOW/@@download/ENCFF444IOW.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF586KIH bed narrowPeak optimal idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF664CSQ, ENCFF762LDF, ENCFF768KKE 916340 ENCODE Processing Pipeline 5a8e504b171a26058efc3a830eef1183 https://www.encodeproject.org/files/ENCFF586KIH/@@download/ENCFF586KIH.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF762LDF bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 2 ENCFF335UKS, ENCFF719RCX 4135581 ENCODE Processing Pipeline 4fd1ec871d2c9fd0acf45b090d6098f8 https://www.encodeproject.org/files/ENCFF762LDF/@@download/ENCFF762LDF.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF483SPH bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 2 ENCFF049OXC, ENCFF139XSQ 4132264 ENCODE Processing Pipeline 8713605beaae5aef9f132b26f8650e9b https://www.encodeproject.org/files/ENCFF483SPH/@@download/ENCFF483SPH.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF664CSQ bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF335UKS, ENCFF479YGR, ENCFF719RCX, ENCFF754DME 5589493 ENCODE Processing Pipeline cc57ed24ee5f77c54dae094d7321fca1 https://www.encodeproject.org/files/ENCFF664CSQ/@@download/ENCFF664CSQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF889OQM bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF049OXC, ENCFF139XSQ, ENCFF927WZT, ENCFF959AJO 5568774 ENCODE Processing Pipeline 4b86220dd0663e53c2654237d5b3c86f https://www.encodeproject.org/files/ENCFF889OQM/@@download/ENCFF889OQM.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF409MXQ bed narrowPeak conservative idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF430DVP, ENCFF483SPH, ENCFF889OQM 883361 ENCODE Processing Pipeline 8f0c57486d0463a460d39ffbe63d7dc8 https://www.encodeproject.org/files/ENCFF409MXQ/@@download/ENCFF409MXQ.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking ENCFF768KKE bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1 ENCFF479YGR, ENCFF719RCX, ENCFF754DME 5341806 ENCODE Processing Pipeline d74ba6964064a6af20aa766c161699f4 https://www.encodeproject.org/files/ENCFF768KKE/@@download/ENCFF768KKE.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF001XQD bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HKJ 597913 John Stamatoyannopoulos, UW 30fb1e326e7a3565ea5b075187d289a5 https://www.encodeproject.org/files/ENCFF001XQD/@@download/ENCFF001XQD.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF001XQE bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HKP 800970 John Stamatoyannopoulos, UW d3a793e194cd93b043a032662f5878b1 https://www.encodeproject.org/files/ENCFF001XQE/@@download/ENCFF001XQE.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF002DCR bed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HKJ, ENCFF001HKP 1008976 ENCODE Consortium Analysis Working Group a940b25f9df0e1d4537b3d03d4b2859f https://www.encodeproject.org/files/ENCFF002DCR/@@download/ENCFF002DCR.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF356GCX bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF396STC, ENCFF757OWU 4547474 ENCODE Processing Pipeline 987d9a3385926d29c19ed14f9a724b98 https://www.encodeproject.org/files/ENCFF356GCX/@@download/ENCFF356GCX.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF530JSJ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF535MRQ, ENCFF757OWU 4511337 ENCODE Processing Pipeline 9056ea6a0cf1702eb6edfc797773c65a https://www.encodeproject.org/files/ENCFF530JSJ/@@download/ENCFF530JSJ.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF306OJZ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF396STC, ENCFF535MRQ, ENCFF757OWU 5004794 ENCODE Processing Pipeline a74d97679a3503a1677fd6fac0c95fbc https://www.encodeproject.org/files/ENCFF306OJZ/@@download/ENCFF306OJZ.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF700UZN bed narrowPeak conservative idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF306OJZ, ENCFF356GCX, ENCFF419RSJ, ENCFF530JSJ 759875 ENCODE Processing Pipeline cc9a364f6e494456490626c7dcfd267e https://www.encodeproject.org/files/ENCFF700UZN/@@download/ENCFF700UZN.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF301YXM bed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF306OJZ, ENCFF356GCX, ENCFF419RSJ, ENCFF530JSJ 798011 ENCODE Processing Pipeline 1ec9842f1d3e9d37792d153852e427d5 https://www.encodeproject.org/files/ENCFF301YXM/@@download/ENCFF301YXM.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF574BPV bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF234EAH, ENCFF599WUT 4513051 ENCODE Processing Pipeline b1ba56e9d74ea6d4137505e05b3e4f0f https://www.encodeproject.org/files/ENCFF574BPV/@@download/ENCFF574BPV.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF504WUQ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF234EAH, ENCFF599WUT, ENCFF650OIZ 4912104 ENCODE Processing Pipeline 72fb39c2da7b62e6290a3e70f6729266 https://www.encodeproject.org/files/ENCFF504WUQ/@@download/ENCFF504WUQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF386NQE bed narrowPeak conservative idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF504WUQ, ENCFF574BPV, ENCFF883SBZ 735367 ENCODE Processing Pipeline 68f766ae983769f6b9e449faeb86d343 https://www.encodeproject.org/files/ENCFF386NQE/@@download/ENCFF386NQE.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF266GGD bed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF504WUQ, ENCFF574BPV, ENCFF883SBZ 763849 ENCODE Processing Pipeline 0676fa28175caf0322d3a91f2a8ff9f1 https://www.encodeproject.org/files/ENCFF266GGD/@@download/ENCFF266GGD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF883SBZ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF234EAH, ENCFF650OIZ 4460441 ENCODE Processing Pipeline dc4d73cbe139008389921ec6d1eb8947 https://www.encodeproject.org/files/ENCFF883SBZ/@@download/ENCFF883SBZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF282SYC bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF225ESX, ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 6933799 ENCODE Processing Pipeline d0eefe31099d8763eaa46cf1dad75fd8 https://www.encodeproject.org/files/ENCFF282SYC/@@download/ENCFF282SYC.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF142BLK bed narrowPeak conservative idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF105NHW, ENCFF282SYC, ENCFF828HUH 1776056 ENCODE Processing Pipeline 33d089b01deee35e91a613600d1cbe65 https://www.encodeproject.org/files/ENCFF142BLK/@@download/ENCFF142BLK.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF828HUH bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF225ESX, ENCFF240KUX, ENCFF564TQN 6890491 ENCODE Processing Pipeline 0f2ac077aab5dae5d0181d0a59da7483 https://www.encodeproject.org/files/ENCFF828HUH/@@download/ENCFF828HUH.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF788CHY bed narrowPeak optimal idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF105NHW, ENCFF282SYC, ENCFF828HUH 1817661 ENCODE Processing Pipeline 250df0fa4ddeb6f03963a6a3429bacff https://www.encodeproject.org/files/ENCFF788CHY/@@download/ENCFF788CHY.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF105NHW bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 6851081 ENCODE Processing Pipeline 3e1274b21839788d9b813acfac2a5dfe https://www.encodeproject.org/files/ENCFF105NHW/@@download/ENCFF105NHW.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF344RVQ bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF169DGZ, ENCFF575LRB, ENCFF690RUG 6999162 ENCODE Processing Pipeline 01a2a689272bde087cfe4e7d63617d54 https://www.encodeproject.org/files/ENCFF344RVQ/@@download/ENCFF344RVQ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF464HJB bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF024SWK, ENCFF169DGZ, ENCFF575LRB, ENCFF690RUG 6973738 ENCODE Processing Pipeline 9778d60be350248b0dafe88ab9958115 https://www.encodeproject.org/files/ENCFF464HJB/@@download/ENCFF464HJB.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF413TLE bed narrowPeak conservative idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF224IKQ, ENCFF344RVQ, ENCFF419RSJ, ENCFF464HJB 1786043 ENCODE Processing Pipeline ecebff0078bc4a19de55c27b329ca2c1 https://www.encodeproject.org/files/ENCFF413TLE/@@download/ENCFF413TLE.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF224IKQ bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF024SWK, ENCFF169DGZ, ENCFF690RUG 6927188 ENCODE Processing Pipeline ead8308e5c66acefd36ecc7d84711af5 https://www.encodeproject.org/files/ENCFF224IKQ/@@download/ENCFF224IKQ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF855KNL bed narrowPeak optimal idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 immortalized cell line adult male 54 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF224IKQ, ENCFF344RVQ, ENCFF419RSJ, ENCFF464HJB 1830825 ENCODE Processing Pipeline ae0cfe4bf5df5ff4c50aa44b0bf17ef0 https://www.encodeproject.org/files/ENCFF855KNL/@@download/ENCFF855KNL.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments poor library complexity, severe bottlenecking ENCFF001XOJ bed narrowPeak peaks ENCSR000DRK ChIP-seq EFO:0005343 GM12870 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HEI 699502 John Stamatoyannopoulos, UW 9efb229dd3135a8ad4aea75ae435859a https://www.encodeproject.org/files/ENCFF001XOJ/@@download/ENCFF001XOJ.bed.gz hg19 archived low read length missing possible_controls, insufficient read depth extremely low read depth ENCFF001XOK bed narrowPeak peaks ENCSR000DRK ChIP-seq EFO:0005343 GM12870 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HEJ 398659 John Stamatoyannopoulos, UW 876ab88c7578c62e578053b4c87a3835 https://www.encodeproject.org/files/ENCFF001XOK/@@download/ENCFF001XOK.bed.gz hg19 archived low read length missing possible_controls, insufficient read depth extremely low read depth ENCFF607OIR bed narrowPeak peaks ENCSR414CQB ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 3 1 ENCFF175SZI, ENCFF257CBZ 710283 Tim Reddy, Duke 2d3b67ee5c84343046694f423d874c40 https://www.encodeproject.org/files/ENCFF607OIR/@@download/ENCFF607OIR.bed.gz GRCh38 released ENCFF917DPF bed narrowPeak peaks ENCSR414CQB ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 1 1 ENCFF043GAS, ENCFF437EOE 711036 Tim Reddy, Duke 7fd344b0695f54530cf1ca93a3cad5a9 https://www.encodeproject.org/files/ENCFF917DPF/@@download/ENCFF917DPF.bed.gz GRCh38 released ENCFF234IET bed narrowPeak peaks ENCSR414CQB ChIP-seq EFO:0001086 A549 immortalized cell line adult male 58 year Homo sapiens dexamethasone CTCF-human ENCAB809HPR DNA formaldehyde False 2016-12-20 GGR 2 1 ENCFF046XBU, ENCFF469RRB 812101 Tim Reddy, Duke f8a32f727f4217076951fd9353dada93 https://www.encodeproject.org/files/ENCFF234IET/@@download/ENCFF234IET.bed.gz GRCh38 released ENCFF001XRK bed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HOV 514150 John Stamatoyannopoulos, UW f951ec040d109e841c247acfdf835241 https://www.encodeproject.org/files/ENCFF001XRK/@@download/ENCFF001XRK.bed.gz hg19 released inconsistent platforms, low read length missing unfiltered alignments insufficient read depth ENCFF002DDA bed narrowPeak optimal idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HOV 375499 ENCODE Consortium Analysis Working Group 2bc274678f574d811003c25e47864252 https://www.encodeproject.org/files/ENCFF002DDA/@@download/ENCFF002DDA.bed.gz hg19 released inconsistent platforms, low read length missing unfiltered alignments insufficient read depth ENCFF600CVY bed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF340ENP, ENCFF945XQT 2203007 ENCODE Processing Pipeline 71b6784ff98db8e9717b8eaf7cd71d5e https://www.encodeproject.org/files/ENCFF600CVY/@@download/ENCFF600CVY.bed.gz hg19 released inconsistent platforms, low read length missing unfiltered alignments insufficient read depth ENCFF041ZEP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF600CVY 403915 ENCODE Processing Pipeline d1c0e9bedf65662ab2331dc570c36305 https://www.encodeproject.org/files/ENCFF041ZEP/@@download/ENCFF041ZEP.bed.gz hg19 released inconsistent platforms, low read length missing unfiltered alignments insufficient read depth ENCFF152JZK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419RSJ, ENCFF481FOQ 409734 ENCODE Processing Pipeline 330c6203864c6ab054fb89d40fde6a9e https://www.encodeproject.org/files/ENCFF152JZK/@@download/ENCFF152JZK.bed.gz GRCh38 released inconsistent platforms, low read length missing unfiltered alignments insufficient read depth ENCFF481FOQ bed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 immortalized cell line adult female 36 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF337ZUN, ENCFF525MRS 2200843 ENCODE Processing Pipeline a06423cc94fdce62cdcf6fded7e39fd4 https://www.encodeproject.org/files/ENCFF481FOQ/@@download/ENCFF481FOQ.bed.gz GRCh38 released inconsistent platforms, low read length missing unfiltered alignments insufficient read depth ENCFF001XNI bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBJ 778320 John Stamatoyannopoulos, UW 62948b776e85af1c9b09394e351a0684 https://www.encodeproject.org/files/ENCFF001XNI/@@download/ENCFF001XNI.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XNJ bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HBQ 713329 John Stamatoyannopoulos, UW 32960c49d1ed141e6c54f15414942bb9 https://www.encodeproject.org/files/ENCFF001XNJ/@@download/ENCFF001XNJ.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XNK bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HBS 734046 John Stamatoyannopoulos, UW 37e5d4639c27ae8d8dbee42b1badda71 https://www.encodeproject.org/files/ENCFF001XNK/@@download/ENCFF001XNK.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCG bed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2, 3 ENCFF001HBJ, ENCFF001HBQ, ENCFF001HBS 953786 ENCODE Consortium Analysis Working Group 5540da952ea93db87192bf07e709c9bd https://www.encodeproject.org/files/ENCFF002DCG/@@download/ENCFF002DCG.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF888AYQ bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF225NQU, ENCFF730ZVL 4572219 ENCODE Processing Pipeline d59e7c57290417a56d40393490e7118f https://www.encodeproject.org/files/ENCFF888AYQ/@@download/ENCFF888AYQ.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF861LCH bed narrowPeak conservative idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF106MGM, ENCFF419RSJ, ENCFF604CNN, ENCFF888AYQ 767318 ENCODE Processing Pipeline 17c9dfe8e5fc2d3cf2640ee58ef36758 https://www.encodeproject.org/files/ENCFF861LCH/@@download/ENCFF861LCH.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF751IKT bed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF106MGM, ENCFF419RSJ, ENCFF604CNN, ENCFF888AYQ 783806 ENCODE Processing Pipeline 90b5637752b82d2e60a3e9511ff1b36c https://www.encodeproject.org/files/ENCFF751IKT/@@download/ENCFF751IKT.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF106MGM bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF730ZVL 2996265 ENCODE Processing Pipeline ead7274ef388151296b5d38e26292677 https://www.encodeproject.org/files/ENCFF106MGM/@@download/ENCFF106MGM.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF604CNN bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 3 ENCFF225NQU 4300685 ENCODE Processing Pipeline 88ea0d69dee364e611142556297594fc https://www.encodeproject.org/files/ENCFF604CNN/@@download/ENCFF604CNN.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF672SJH bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 3 ENCFF437XQZ, ENCFF483LML 4221864 ENCODE Processing Pipeline f4795b9a57695643706a4c9b40664cb8 https://www.encodeproject.org/files/ENCFF672SJH/@@download/ENCFF672SJH.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF267DUF bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF418PTV, ENCFF437XQZ, ENCFF483LML 4445974 ENCODE Processing Pipeline 31537dbff1238032307a1c85d4587f0c https://www.encodeproject.org/files/ENCFF267DUF/@@download/ENCFF267DUF.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF858HDY bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF418PTV, ENCFF437XQZ 2866804 ENCODE Processing Pipeline 1805a6e56d8ac8d00e55976f1a24100c https://www.encodeproject.org/files/ENCFF858HDY/@@download/ENCFF858HDY.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF531KWH bed narrowPeak conservative idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF001TDO, ENCFF267DUF, ENCFF672SJH, ENCFF858HDY 723298 ENCODE Processing Pipeline d1ee67fcb2c53aecc91545284754dd11 https://www.encodeproject.org/files/ENCFF531KWH/@@download/ENCFF531KWH.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF671RVI bed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF001TDO, ENCFF267DUF, ENCFF672SJH, ENCFF858HDY 739999 ENCODE Processing Pipeline aaf3b50473d1552c9b4cf0b4678f1564 https://www.encodeproject.org/files/ENCFF671RVI/@@download/ENCFF671RVI.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001UTX bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1283195 Vishwanath Iyer, UTA 5def847dbb8a583b91d6da68b345c434 https://www.encodeproject.org/files/ENCFF001UTX/@@download/ENCFF001UTX.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002DBR bed narrowPeak optimal idr thresholded peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1288633 ENCODE Consortium Analysis Working Group b19f9819dee4cce3c29d258c816d897c https://www.encodeproject.org/files/ENCFF002DBR/@@download/ENCFF002DBR.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF226MQR bed narrowPeak conservative idr thresholded peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF680MAX, ENCFF705JDO, ENCFF974JVU 777450 ENCODE Processing Pipeline 88ccad5203a63876e6a75b360b38c092 https://www.encodeproject.org/files/ENCFF226MQR/@@download/ENCFF226MQR.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF705JDO bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 2 ENCFF235OMO, ENCFF448PML, ENCFF568IYC 3000827 ENCODE Processing Pipeline 7b3b2e82e8ac84f8073e7731a6a0bf29 https://www.encodeproject.org/files/ENCFF705JDO/@@download/ENCFF705JDO.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF680MAX bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF235OMO, ENCFF455HQY, ENCFF568IYC 2565747 ENCODE Processing Pipeline 5809b16b5873fc653245eecdc613075a https://www.encodeproject.org/files/ENCFF680MAX/@@download/ENCFF680MAX.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF974JVU bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF235OMO, ENCFF448PML, ENCFF455HQY, ENCFF568IYC 4939618 ENCODE Processing Pipeline 71f478c74543b4cd2bf942e45d6b1bd8 https://www.encodeproject.org/files/ENCFF974JVU/@@download/ENCFF974JVU.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF719EWH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF559LUB 564272 ENCODE Processing Pipeline bae201eac68a35464edbdcff8c56a1ce https://www.encodeproject.org/files/ENCFF719EWH/@@download/ENCFF719EWH.bed.gz hg19 released experiment not submitted to GEO ENCFF302QQX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF419RSJ, ENCFF654IUM 556588 ENCODE Processing Pipeline f72f8152431cc7ad83b3aede0ed94396 https://www.encodeproject.org/files/ENCFF302QQX/@@download/ENCFF302QQX.bed.gz GRCh38 released experiment not submitted to GEO ENCFF559LUB bed narrowPeak peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF658UTU, ENCFF788LJE 6209258 ENCODE Processing Pipeline 238f11d7842436e967073bd16144a892 https://www.encodeproject.org/files/ENCFF559LUB/@@download/ENCFF559LUB.bed.gz hg19 released experiment not submitted to GEO ENCFF654IUM bed narrowPeak peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF665FWN, ENCFF996SQS 6207861 ENCODE Processing Pipeline 8da2c9ab108705d7d53d3c3c71681cfc https://www.encodeproject.org/files/ENCFF654IUM/@@download/ENCFF654IUM.bed.gz GRCh38 released experiment not submitted to GEO ENCFF591HNR bed narrowPeak peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF068ZJF, ENCFF234PLD 6061262 ENCODE Processing Pipeline 6efa100e6cc623afc54dcf99f03b75f8 https://www.encodeproject.org/files/ENCFF591HNR/@@download/ENCFF591HNR.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF846FIG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF001TDO, ENCFF591HNR 698458 ENCODE Processing Pipeline 542355891e18c06dd3f4d3ea87b7fce7 https://www.encodeproject.org/files/ENCFF846FIG/@@download/ENCFF846FIG.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF634IMR bed narrowPeak peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF249KIQ, ENCFF446IQQ 6048556 ENCODE Processing Pipeline 50538ba249b0202df8549477ab836395 https://www.encodeproject.org/files/ENCFF634IMR/@@download/ENCFF634IMR.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF142JXX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF419RSJ, ENCFF634IMR 691566 ENCODE Processing Pipeline 1e56ae934370b55ec2add3ffaa87f040 https://www.encodeproject.org/files/ENCFF142JXX/@@download/ENCFF142JXX.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF300UJN bed narrowPeak peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF714MWU 6414247 ENCODE Processing Pipeline 16579d4b9d4924e23c1e50d246a8f24f https://www.encodeproject.org/files/ENCFF300UJN/@@download/ENCFF300UJN.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF112ACP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF300UJN 809701 ENCODE Processing Pipeline 93ed056a9f4c1a0553ad3e379b0785ab https://www.encodeproject.org/files/ENCFF112ACP/@@download/ENCFF112ACP.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF975SBX bed narrowPeak peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF231PHQ, ENCFF894ZWD 6421941 ENCODE Processing Pipeline 49915e4602a4af5a660c2345e7467bf8 https://www.encodeproject.org/files/ENCFF975SBX/@@download/ENCFF975SBX.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF486UBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF975SBX 814985 ENCODE Processing Pipeline c8844ea7cf8355c685674fe4c19ea862 https://www.encodeproject.org/files/ENCFF486UBE/@@download/ENCFF486UBE.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF184EJR bed narrowPeak peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF555CXI, ENCFF888YHU 6314525 ENCODE Processing Pipeline f64281741ba2ca0e2d9ad7e7fb3b3810 https://www.encodeproject.org/files/ENCFF184EJR/@@download/ENCFF184EJR.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF868FCM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF184EJR 818736 ENCODE Processing Pipeline 29ab6dec545c4501acae219017b3d763 https://www.encodeproject.org/files/ENCFF868FCM/@@download/ENCFF868FCM.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF118ZCM bed narrowPeak peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF242HNU, ENCFF319SAQ 6315954 ENCODE Processing Pipeline b02da5b09cb8c0012ae55a87001ce1b1 https://www.encodeproject.org/files/ENCFF118ZCM/@@download/ENCFF118ZCM.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF706HDG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF118ZCM, ENCFF419RSJ 819372 ENCODE Processing Pipeline 8ba3d3a088bba123452f6d9eb6bb8c27 https://www.encodeproject.org/files/ENCFF706HDG/@@download/ENCFF706HDG.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF088TUO bed narrowPeak peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF263IJB, ENCFF570YAA 4655953 ENCODE Processing Pipeline e5c8b9aff0b2a9efeacc424525f999b2 https://www.encodeproject.org/files/ENCFF088TUO/@@download/ENCFF088TUO.bed.gz hg19 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF369UWV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF088TUO 168397 ENCODE Processing Pipeline f2e6dccbbba9d2961a62abe146f5b625 https://www.encodeproject.org/files/ENCFF369UWV/@@download/ENCFF369UWV.bed.gz hg19 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF538QPY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF919KHH 166110 ENCODE Processing Pipeline d8f078ab224f66432b3d7b003f8c3f16 https://www.encodeproject.org/files/ENCFF538QPY/@@download/ENCFF538QPY.bed.gz GRCh38 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF919KHH bed narrowPeak peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF604JZN, ENCFF752HGK 4593931 ENCODE Processing Pipeline f6474fb9f18d9a34ff8da4de1984df6a https://www.encodeproject.org/files/ENCFF919KHH/@@download/ENCFF919KHH.bed.gz GRCh38 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF637FOR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF173TPC 258148 ENCODE Processing Pipeline b47d818695eede8a4856409220c10f6f https://www.encodeproject.org/files/ENCFF637FOR/@@download/ENCFF637FOR.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF173TPC bed narrowPeak peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF191LEP, ENCFF546PNW 6259235 ENCODE Processing Pipeline e513594478f6683c4ed945a918cd417a https://www.encodeproject.org/files/ENCFF173TPC/@@download/ENCFF173TPC.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF436ENK bed narrowPeak peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF047KMB, ENCFF076LAL 6261302 ENCODE Processing Pipeline 0bfe9fee946edcce43c9b41d903b86f1 https://www.encodeproject.org/files/ENCFF436ENK/@@download/ENCFF436ENK.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF916FGF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF436ENK 263275 ENCODE Processing Pipeline f96b76d134f54a31962e14f3fba76aae https://www.encodeproject.org/files/ENCFF916FGF/@@download/ENCFF916FGF.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF363MKS bed narrowPeak peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF062SIS, ENCFF204YUH 5172486 ENCODE Processing Pipeline 840c79f7b59445c33208261f59ed8b26 https://www.encodeproject.org/files/ENCFF363MKS/@@download/ENCFF363MKS.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF709PEA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF363MKS 1604 ENCODE Processing Pipeline fee560dc4ec66e749c4d38567e91028c https://www.encodeproject.org/files/ENCFF709PEA/@@download/ENCFF709PEA.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF199GNW bed narrowPeak peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF104DRW, ENCFF185WUG 5180595 ENCODE Processing Pipeline 5deda13de56a78d254edd42df7eb5a96 https://www.encodeproject.org/files/ENCFF199GNW/@@download/ENCFF199GNW.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF399NTP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF199GNW, ENCFF419RSJ 1952 ENCODE Processing Pipeline 30f3486a3017f87c0743e747dd89eb8b https://www.encodeproject.org/files/ENCFF399NTP/@@download/ENCFF399NTP.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF230IDW bed narrowPeak peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF021JJL, ENCFF919PUP 6734617 ENCODE Processing Pipeline 4894bdd4a9bce3552cb6a0c1123fb0be https://www.encodeproject.org/files/ENCFF230IDW/@@download/ENCFF230IDW.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF974SIH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF230IDW 548722 ENCODE Processing Pipeline 161bf154480ad101b65eabcc9250ffab https://www.encodeproject.org/files/ENCFF974SIH/@@download/ENCFF974SIH.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF167SCX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF930EVC 549382 ENCODE Processing Pipeline ce810b28c03745d40e7a7368a2262a47 https://www.encodeproject.org/files/ENCFF167SCX/@@download/ENCFF167SCX.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF930EVC bed narrowPeak peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF339EOA, ENCFF842GBA 6739145 ENCODE Processing Pipeline cde4369bcbc9d6d8bc2b60df5e679de9 https://www.encodeproject.org/files/ENCFF930EVC/@@download/ENCFF930EVC.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF203ZIS bed narrowPeak optimal idr thresholded peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-24 ENCODE 1, 2 ENCFF027MQJ, ENCFF419RSJ, ENCFF629JJL, ENCFF777TNZ 1388363 ENCODE Processing Pipeline 7c94b3d7b8c149735a4d406697dad69e https://www.encodeproject.org/files/ENCFF203ZIS/@@download/ENCFF203ZIS.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF027MQJ bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-24 ENCODE 1 ENCFF202XBB, ENCFF687LIL, ENCFF956GLJ 6899205 ENCODE Processing Pipeline 5be82791d3e6d640e6d0930adfaf6a94 https://www.encodeproject.org/files/ENCFF027MQJ/@@download/ENCFF027MQJ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF629JJL bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-24 ENCODE 2 ENCFF589DKU, ENCFF687LIL, ENCFF956GLJ 6916082 ENCODE Processing Pipeline ce6b15ac5420c44a86cdfa8a20e09578 https://www.encodeproject.org/files/ENCFF629JJL/@@download/ENCFF629JJL.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF777TNZ bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-24 ENCODE 1, 2 ENCFF202XBB, ENCFF589DKU, ENCFF687LIL, ENCFF956GLJ 6935302 ENCODE Processing Pipeline 90f8dd5101c2025e7fdfa7e1ee26dd5d https://www.encodeproject.org/files/ENCFF777TNZ/@@download/ENCFF777TNZ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF752PSY bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-24 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF773HIM 6715847 ENCODE Processing Pipeline 9b478693faabb4574d0ff5fd47c56a59 https://www.encodeproject.org/files/ENCFF752PSY/@@download/ENCFF752PSY.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF282QPK bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-24 ENCODE 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW 6982761 ENCODE Processing Pipeline 5126fbc6f3bf70276250ace9b4e7a6cf https://www.encodeproject.org/files/ENCFF282QPK/@@download/ENCFF282QPK.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF566IFZ bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-24 ENCODE 1, 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW, ENCFF773HIM 6850645 ENCODE Processing Pipeline 35ff47df9817a4e54c0c10952aa44660 https://www.encodeproject.org/files/ENCFF566IFZ/@@download/ENCFF566IFZ.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF355OQM bed narrowPeak conservative idr thresholded peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells adult male 53 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-24 ENCODE 1, 2 ENCFF001TDO, ENCFF282QPK, ENCFF566IFZ, ENCFF752PSY 1382660 ENCODE Processing Pipeline aa33c900320825756bfd377ef566f12e https://www.encodeproject.org/files/ENCFF355OQM/@@download/ENCFF355OQM.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF001UUB bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1237270 Vishwanath Iyer, UTA 40bca92b83bf3c44b8a04a79f5933a63 https://www.encodeproject.org/files/ENCFF001UUB/@@download/ENCFF001UUB.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking missing derived_from insufficient read depth ENCFF673PVL bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF061SRP 3802979 ENCODE Processing Pipeline e8625a4f7a1596a6f471d30c2887c751 https://www.encodeproject.org/files/ENCFF673PVL/@@download/ENCFF673PVL.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF350MHZ bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF059JNI 3120017 ENCODE Processing Pipeline 28099c83f34b8fdac24df5bd4932cb69 https://www.encodeproject.org/files/ENCFF350MHZ/@@download/ENCFF350MHZ.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF655NUL bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF059JNI, ENCFF061SRP 4112664 ENCODE Processing Pipeline df16579c91c155a8bce9c3f956f62087 https://www.encodeproject.org/files/ENCFF655NUL/@@download/ENCFF655NUL.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF720CRM bed narrowPeak conservative idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF350MHZ, ENCFF419RSJ, ENCFF655NUL, ENCFF673PVL 585843 ENCODE Processing Pipeline 09491c7d77a1015d1fdfd20f44707732 https://www.encodeproject.org/files/ENCFF720CRM/@@download/ENCFF720CRM.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF068YLN bed narrowPeak optimal idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF350MHZ, ENCFF419RSJ, ENCFF655NUL, ENCFF673PVL 617040 ENCODE Processing Pipeline e5782db28a71821e72311bc876197b00 https://www.encodeproject.org/files/ENCFF068YLN/@@download/ENCFF068YLN.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF310RCE bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF211IRJ, ENCFF737EOY 3764862 ENCODE Processing Pipeline 14542614543bec9e38353480665df435 https://www.encodeproject.org/files/ENCFF310RCE/@@download/ENCFF310RCE.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF307XCC bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF481VJG, ENCFF737EOY 3128817 ENCODE Processing Pipeline 68dd84671ebfd6108b3d782fffa3f26b https://www.encodeproject.org/files/ENCFF307XCC/@@download/ENCFF307XCC.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF881YDR bed narrowPeak optimal idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF250AFB, ENCFF307XCC, ENCFF310RCE 616195 ENCODE Processing Pipeline 57dc061a40055e9cafafda1448190a37 https://www.encodeproject.org/files/ENCFF881YDR/@@download/ENCFF881YDR.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF550JAQ bed narrowPeak conservative idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF250AFB, ENCFF307XCC, ENCFF310RCE 590010 ENCODE Processing Pipeline 6f9fbcde7bbd88ef344a4864500fd536 https://www.encodeproject.org/files/ENCFF550JAQ/@@download/ENCFF550JAQ.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF250AFB bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue adult female 30 year, 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF211IRJ, ENCFF481VJG, ENCFF737EOY 4126649 ENCODE Processing Pipeline 9cc1bce2f8c89c62e706aa4aa733c905 https://www.encodeproject.org/files/ENCFF250AFB/@@download/ENCFF250AFB.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF002CDP bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1005226 ENCODE Consortium Analysis Working Group 9c53d27a4d8c71629f8c1ebc059a8ff4 https://www.encodeproject.org/files/ENCFF002CDP/@@download/ENCFF002CDP.bed.gz hg19 archived mixed read lengths, low read depth, mild to moderate bottlenecking, low read length missing derived_from insufficient read depth ENCFF356LIU bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF061OYK, ENCFF419RSJ, ENCFF445FMQ, ENCFF933NTR 666122 ENCODE Processing Pipeline bec0a5b3954eadf15bf0e901b863b037 https://www.encodeproject.org/files/ENCFF356LIU/@@download/ENCFF356LIU.bed.gz GRCh38 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF536RGD bed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF061OYK, ENCFF419RSJ, ENCFF445FMQ, ENCFF933NTR 636383 ENCODE Processing Pipeline 9643da0f20e987d52fc4568c640658d6 https://www.encodeproject.org/files/ENCFF536RGD/@@download/ENCFF536RGD.bed.gz GRCh38 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF061OYK bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP 2585473 ENCODE Processing Pipeline 41baa215ec49aef1e5747b9f33303d33 https://www.encodeproject.org/files/ENCFF061OYK/@@download/ENCFF061OYK.bed.gz GRCh38 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF933NTR bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP, ENCFF994NWU 4477240 ENCODE Processing Pipeline 7d8c536acbb4c8108476c047daa42536 https://www.encodeproject.org/files/ENCFF933NTR/@@download/ENCFF933NTR.bed.gz GRCh38 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF445FMQ bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 2 ENCFF873ZWP, ENCFF994NWU 3995400 ENCODE Processing Pipeline ed460a311d46d8509cdf56b16d6bd74e https://www.encodeproject.org/files/ENCFF445FMQ/@@download/ENCFF445FMQ.bed.gz GRCh38 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF706QLS bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1 ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS 2436987 ENCODE Processing Pipeline 989f9f01a47be649827afbe7613f9e79 https://www.encodeproject.org/files/ENCFF706QLS/@@download/ENCFF706QLS.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF934NEI bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 4005719 ENCODE Processing Pipeline 1f1ed3ead872ba5694af582f563d0d81 https://www.encodeproject.org/files/ENCFF934NEI/@@download/ENCFF934NEI.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF551KNM bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF232FPZ, ENCFF343LTM, ENCFF389RQC, ENCFF624TPS 4456553 ENCODE Processing Pipeline d7abf752df6d52dac24a492114201c4a https://www.encodeproject.org/files/ENCFF551KNM/@@download/ENCFF551KNM.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF096AKZ bed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF551KNM, ENCFF706QLS, ENCFF934NEI 628471 ENCODE Processing Pipeline 2dde1f228dced8e1b51fc5a3d88c87dc https://www.encodeproject.org/files/ENCFF096AKZ/@@download/ENCFF096AKZ.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF833FTF bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF551KNM, ENCFF706QLS, ENCFF934NEI 655789 ENCODE Processing Pipeline 265cfe705263baae508111a4114aab61 https://www.encodeproject.org/files/ENCFF833FTF/@@download/ENCFF833FTF.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF792VDM bed narrowPeak peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue adult male 37 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF723SME, ENCFF959YHF 5873759 ENCODE Processing Pipeline 66c3988d5eb739b8b18b92b3b1f66dfd https://www.encodeproject.org/files/ENCFF792VDM/@@download/ENCFF792VDM.bed.gz hg19 released experiment not submitted to GEO ENCFF025MZL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue adult male 37 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF792VDM 538101 ENCODE Processing Pipeline babdd0c4a95c0c19681c56903a1c835b https://www.encodeproject.org/files/ENCFF025MZL/@@download/ENCFF025MZL.bed.gz hg19 released experiment not submitted to GEO ENCFF627LTJ bed narrowPeak peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue adult male 37 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF644ZVV, ENCFF883LXG 5829980 ENCODE Processing Pipeline 96cfacc79d5fc4272a0f9c1f0c96b368 https://www.encodeproject.org/files/ENCFF627LTJ/@@download/ENCFF627LTJ.bed.gz GRCh38 released experiment not submitted to GEO ENCFF693MYU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue adult male 37 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-08-28 ENCODE 1 ENCFF419RSJ, ENCFF627LTJ 528106 ENCODE Processing Pipeline 0f9fbcf8f2d881e5cf9c738ab194fba9 https://www.encodeproject.org/files/ENCFF693MYU/@@download/ENCFF693MYU.bed.gz GRCh38 released experiment not submitted to GEO ENCFF001XTH bed narrowPeak peaks ENCSR000DWX ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HVD 820837 John Stamatoyannopoulos, UW 491bfef856c0181341b7f6b59a95e611 https://www.encodeproject.org/files/ENCFF001XTH/@@download/ENCFF001XTH.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XTI bed narrowPeak peaks ENCSR000DWX ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HVE 698678 John Stamatoyannopoulos, UW fa6a965eddd8af78a433b2a3476dc47e https://www.encodeproject.org/files/ENCFF001XTI/@@download/ENCFF001XTI.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DDN bed narrowPeak optimal idr thresholded peaks ENCSR000DWX ChIP-seq CL:0000312 keratinocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HVD, ENCFF001HVE 894122 ENCODE Consortium Analysis Working Group 98a9e7ba887fd27bf5059a647e9b84cb https://www.encodeproject.org/files/ENCFF002DDN/@@download/ENCFF002DDN.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XRB bed narrowPeak peaks ENCSR000DUG ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HNJ 1198006 John Stamatoyannopoulos, UW 9a0725360d6dbba1db63ea1c9da49d36 https://www.encodeproject.org/files/ENCFF001XRB/@@download/ENCFF001XRB.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XRC bed narrowPeak peaks ENCSR000DUG ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HNK 719036 John Stamatoyannopoulos, UW 181f9e13579608834dd3fa3acf3bdff8 https://www.encodeproject.org/files/ENCFF001XRC/@@download/ENCFF001XRC.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCX bed narrowPeak optimal idr thresholded peaks ENCSR000DUG ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HNJ, ENCFF001HNK 926597 ENCODE Consortium Analysis Working Group c001aafca6d6350bc4ee33ec1100574e https://www.encodeproject.org/files/ENCFF002DCX/@@download/ENCFF002DCX.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XTJ bed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell adult male 45 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HVT 722598 John Stamatoyannopoulos, UW 48a51fbc5d3c55523a17188b1c0125b3 https://www.encodeproject.org/files/ENCFF001XTJ/@@download/ENCFF001XTJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF002DDO bed narrowPeak optimal idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell adult male 45 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HVT 711922 ENCODE Consortium Analysis Working Group bc64fef4c49c1c68c531c03381fb685f https://www.encodeproject.org/files/ENCFF002DDO/@@download/ENCFF002DDO.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF181KEB bed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell adult male 45 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225KSP, ENCFF621QAX 4849642 ENCODE Processing Pipeline 46f31a8b0d77d9c6158a8180e8cb041c https://www.encodeproject.org/files/ENCFF181KEB/@@download/ENCFF181KEB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF148VQH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell adult male 45 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001TDO, ENCFF181KEB 560605 ENCODE Processing Pipeline a86ff2d29e60757f2f52edeee3d0c068 https://www.encodeproject.org/files/ENCFF148VQH/@@download/ENCFF148VQH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF510CUI bed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell adult male 45 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF662VGC, ENCFF758ZNV 4815984 ENCODE Processing Pipeline 496dbbf8a8d3dbfa66398b63d149be7c https://www.encodeproject.org/files/ENCFF510CUI/@@download/ENCFF510CUI.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF218LOB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell adult male 45 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-02-29 ENCODE 1 ENCFF419RSJ, ENCFF510CUI 558787 ENCODE Processing Pipeline a8b458a51ca0b93d765d5144904a6320 https://www.encodeproject.org/files/ENCFF218LOB/@@download/ENCFF218LOB.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments ENCFF001XST bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTC 862203 John Stamatoyannopoulos, UW e8332ac71efe7497fe88b557ce628c9c https://www.encodeproject.org/files/ENCFF001XST/@@download/ENCFF001XST.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF001XSU bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTD 601656 John Stamatoyannopoulos, UW ac9eb0f49655b416b767f25be87d0f8b https://www.encodeproject.org/files/ENCFF001XSU/@@download/ENCFF001XSU.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF002DDJ bed narrowPeak optimal idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HTC, ENCFF001HTD 869756 ENCODE Consortium Analysis Working Group 8e9f23cdfc27292f8fc0f0b302cd296a https://www.encodeproject.org/files/ENCFF002DDJ/@@download/ENCFF002DDJ.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF248VAH bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF081HVQ, ENCFF873PSH 4106246 ENCODE Processing Pipeline 4836dbceb7f74afa2326b6f2eff23889 https://www.encodeproject.org/files/ENCFF248VAH/@@download/ENCFF248VAH.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF075EWP bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF081HVQ, ENCFF494VZW, ENCFF873PSH 4464865 ENCODE Processing Pipeline b8db5b9fc22c7a7e92462c324c336ed6 https://www.encodeproject.org/files/ENCFF075EWP/@@download/ENCFF075EWP.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF016NHU bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF494VZW, ENCFF873PSH 2729967 ENCODE Processing Pipeline cb4a3bfb3a222713f2274869d9bb937f https://www.encodeproject.org/files/ENCFF016NHU/@@download/ENCFF016NHU.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF389ELU bed narrowPeak conservative idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF016NHU, ENCFF075EWP, ENCFF248VAH, ENCFF419RSJ 625017 ENCODE Processing Pipeline eab4a62407ecb1f4025aeed2f8011c85 https://www.encodeproject.org/files/ENCFF389ELU/@@download/ENCFF389ELU.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF843VHC bed narrowPeak optimal idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF016NHU, ENCFF075EWP, ENCFF248VAH, ENCFF419RSJ 702428 ENCODE Processing Pipeline 58222b6f11836bebf802919942dd9933 https://www.encodeproject.org/files/ENCFF843VHC/@@download/ENCFF843VHC.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments poor library complexity, insufficient read depth, severe bottlenecking ENCFF001XMK bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GYI 696772 John Stamatoyannopoulos, UW 775189b2ba228c134a86ad7c225b47ae https://www.encodeproject.org/files/ENCFF001XMK/@@download/ENCFF001XMK.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XMM bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYJ 775525 John Stamatoyannopoulos, UW 2b0104a1d500acf85ebd1165d5d33d8d https://www.encodeproject.org/files/ENCFF001XMM/@@download/ENCFF001XMM.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCA bed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GYI, ENCFF001GYJ 922298 ENCODE Consortium Analysis Working Group 8098d23f2c7e0a7254a2d573249f4dbd https://www.encodeproject.org/files/ENCFF002DCA/@@download/ENCFF002DCA.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF387TDH bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF436GDS, ENCFF971QGY 4319813 ENCODE Processing Pipeline 903d52e89dd419f67cf73a65691e49b9 https://www.encodeproject.org/files/ENCFF387TDH/@@download/ENCFF387TDH.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF348AGS bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF436GDS, ENCFF887VLI, ENCFF971QGY 2908153 ENCODE Processing Pipeline 6cee9b177400c2f339ddf2626ba86f6c https://www.encodeproject.org/files/ENCFF348AGS/@@download/ENCFF348AGS.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF107LKZ bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF436GDS, ENCFF887VLI 2235869 ENCODE Processing Pipeline 2a15d800eaa4e8ea0ec40409b731e170 https://www.encodeproject.org/files/ENCFF107LKZ/@@download/ENCFF107LKZ.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF322FBH bed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF107LKZ, ENCFF348AGS, ENCFF387TDH, ENCFF419RSJ 782218 ENCODE Processing Pipeline d4def5129c79482333e8df8a68d6acd4 https://www.encodeproject.org/files/ENCFF322FBH/@@download/ENCFF322FBH.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF715GFM bed narrowPeak conservative idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF107LKZ, ENCFF348AGS, ENCFF387TDH, ENCFF419RSJ 710142 ENCODE Processing Pipeline 17f451211b4c7162036c1275e0cac1a8 https://www.encodeproject.org/files/ENCFF715GFM/@@download/ENCFF715GFM.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF241LIY bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF281JOP, ENCFF972ATQ 4309365 ENCODE Processing Pipeline 2e3c84a3715912d9ca749147da1895bd https://www.encodeproject.org/files/ENCFF241LIY/@@download/ENCFF241LIY.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF005RNW bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF772BCU, ENCFF972ATQ 2238862 ENCODE Processing Pipeline 5b3497b5bd24d11f6712be57a28178c5 https://www.encodeproject.org/files/ENCFF005RNW/@@download/ENCFF005RNW.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF567GAL bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF281JOP, ENCFF772BCU, ENCFF972ATQ 2913447 ENCODE Processing Pipeline 91b5f5a6af5d2d08a88b08810c7a2280 https://www.encodeproject.org/files/ENCFF567GAL/@@download/ENCFF567GAL.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF337GZT bed narrowPeak conservative idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF005RNW, ENCFF241LIY, ENCFF567GAL 709373 ENCODE Processing Pipeline 597481c7443b77d022cb769eb0a0bb45 https://www.encodeproject.org/files/ENCFF337GZT/@@download/ENCFF337GZT.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF859PRV bed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF005RNW, ENCFF241LIY, ENCFF567GAL 779989 ENCODE Processing Pipeline 43616394b9f92fa49f35482cff6b7155 https://www.encodeproject.org/files/ENCFF859PRV/@@download/ENCFF859PRV.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XUC bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HYH 519810 John Stamatoyannopoulos, UW d6148e5d95de79bc574b39101563b597 https://www.encodeproject.org/files/ENCFF001XUC/@@download/ENCFF001XUC.bed.gz hg19 archived mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XUE bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HYI 455440 John Stamatoyannopoulos, UW a60c161e74780cafa7169540c23ee93d https://www.encodeproject.org/files/ENCFF001XUE/@@download/ENCFF001XUE.bed.gz hg19 archived mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DDT bed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HYH, ENCFF001HYI 641662 ENCODE Consortium Analysis Working Group 290f42297b4c6b46ff5158f43a51da47 https://www.encodeproject.org/files/ENCFF002DDT/@@download/ENCFF002DDT.bed.gz hg19 archived mild to moderate bottlenecking, low read length insufficient read depth ENCFF385WCR bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF070KUR, ENCFF815EOF 3922023 ENCODE Processing Pipeline 0ca16734c0213b85838c366cdc462a81 https://www.encodeproject.org/files/ENCFF385WCR/@@download/ENCFF385WCR.bed.gz GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF300WWD bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF070KUR, ENCFF113LQX 3990718 ENCODE Processing Pipeline e017e265298c12b3bb55e2c13364b468 https://www.encodeproject.org/files/ENCFF300WWD/@@download/ENCFF300WWD.bed.gz GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF897FQC bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF070KUR, ENCFF113LQX, ENCFF815EOF 4198330 ENCODE Processing Pipeline eafc2782db8268824c0ebf62b1e8bcba https://www.encodeproject.org/files/ENCFF897FQC/@@download/ENCFF897FQC.bed.gz GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF011OYO bed narrowPeak conservative idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF300WWD, ENCFF385WCR, ENCFF419RSJ, ENCFF897FQC 469054 ENCODE Processing Pipeline e711ef8a020c6a5f690a23946c79dbd9 https://www.encodeproject.org/files/ENCFF011OYO/@@download/ENCFF011OYO.bed.gz GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF695MEK bed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF300WWD, ENCFF385WCR, ENCFF419RSJ, ENCFF897FQC 490170 ENCODE Processing Pipeline 79f930fc5699a74526aa59f17a48bd03 https://www.encodeproject.org/files/ENCFF695MEK/@@download/ENCFF695MEK.bed.gz GRCh38 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF200KQQ bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF236EOM, ENCFF681UDE, ENCFF720CUU 4183298 ENCODE Processing Pipeline b892f15ec274912371f6b0836f339ec6 https://www.encodeproject.org/files/ENCFF200KQQ/@@download/ENCFF200KQQ.bed.gz hg19 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF016EUX bed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF200KQQ, ENCFF381HQF, ENCFF658PRB 489043 ENCODE Processing Pipeline 3b4175ee806d5059eb5007e4fa19891b https://www.encodeproject.org/files/ENCFF016EUX/@@download/ENCFF016EUX.bed.gz hg19 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF752WFP bed narrowPeak conservative idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF200KQQ, ENCFF381HQF, ENCFF658PRB 462236 ENCODE Processing Pipeline 7bc497ea00ce4b92f879fcce86513581 https://www.encodeproject.org/files/ENCFF752WFP/@@download/ENCFF752WFP.bed.gz hg19 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF658PRB bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF681UDE, ENCFF720CUU 3859097 ENCODE Processing Pipeline 7e18aacfd30ad12f732a1a305f7f28a3 https://www.encodeproject.org/files/ENCFF658PRB/@@download/ENCFF658PRB.bed.gz hg19 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF381HQF bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF236EOM, ENCFF681UDE 4002859 ENCODE Processing Pipeline bcd5a89d0a3d1dd94e8e36f75c21292c https://www.encodeproject.org/files/ENCFF381HQF/@@download/ENCFF381HQF.bed.gz hg19 released mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XTZ bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXX 1091092 John Stamatoyannopoulos, UW 8b4e4973819a7b9f556172882199b3d9 https://www.encodeproject.org/files/ENCFF001XTZ/@@download/ENCFF001XTZ.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XUA bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXV 713584 John Stamatoyannopoulos, UW d3b4032778c0d2aae425952ac89ed139 https://www.encodeproject.org/files/ENCFF001XUA/@@download/ENCFF001XUA.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DDS bed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HXV, ENCFF001HXX 962837 ENCODE Consortium Analysis Working Group 33fb2c5fb01abb7070faf899450686be https://www.encodeproject.org/files/ENCFF002DDS/@@download/ENCFF002DDS.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF147GBS bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF497TEA, ENCFF633OXE 3391376 ENCODE Processing Pipeline 50f81005561bc7255c796d2fb6ccd057 https://www.encodeproject.org/files/ENCFF147GBS/@@download/ENCFF147GBS.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF924OMX bed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF437VBU, ENCFF641GOK, ENCFF837XNW 890963 ENCODE Processing Pipeline 85e198d151d13048fd43f592ae2d1063 https://www.encodeproject.org/files/ENCFF924OMX/@@download/ENCFF924OMX.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF681LRH bed narrowPeak conservative idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF437VBU, ENCFF641GOK, ENCFF837XNW 804939 ENCODE Processing Pipeline c72dd363c4556e432f57e2363ca32da1 https://www.encodeproject.org/files/ENCFF681LRH/@@download/ENCFF681LRH.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF825LYF bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF497TEA, ENCFF925VPT 4098219 ENCODE Processing Pipeline 68fd96c9aa471af9a8fa085030a42a0f https://www.encodeproject.org/files/ENCFF825LYF/@@download/ENCFF825LYF.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF641GOK bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF171VRI, ENCFF627YEZ 3380690 ENCODE Processing Pipeline 18c82b43513367dfcefb9a9627bf4994 https://www.encodeproject.org/files/ENCFF641GOK/@@download/ENCFF641GOK.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF837XNW bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF025QGP, ENCFF627YEZ 4094993 ENCODE Processing Pipeline 6fd0e2c1d8d4cdeef8c15beacf5af599 https://www.encodeproject.org/files/ENCFF837XNW/@@download/ENCFF837XNW.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF428ZQS bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF497TEA, ENCFF633OXE, ENCFF925VPT 4813218 ENCODE Processing Pipeline 682f83fc099ac5f7fef929c05f5d5338 https://www.encodeproject.org/files/ENCFF428ZQS/@@download/ENCFF428ZQS.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF505BGP bed narrowPeak conservative idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF147GBS, ENCFF419RSJ, ENCFF428ZQS, ENCFF825LYF 814441 ENCODE Processing Pipeline 0a286529c5c9c8e6a62ca76ea7c08750 https://www.encodeproject.org/files/ENCFF505BGP/@@download/ENCFF505BGP.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF262ZOT bed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF147GBS, ENCFF419RSJ, ENCFF428ZQS, ENCFF825LYF 901448 ENCODE Processing Pipeline bc7609823702456884e7fa15510e9683 https://www.encodeproject.org/files/ENCFF262ZOT/@@download/ENCFF262ZOT.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF437VBU bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 immortalized cell line child female 1 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF025QGP, ENCFF171VRI, ENCFF627YEZ 4767932 ENCODE Processing Pipeline 9c022d553f8c101946af76439987697b https://www.encodeproject.org/files/ENCFF437VBU/@@download/ENCFF437VBU.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XPT bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIY 751126 John Stamatoyannopoulos, UW d32edfa447bcab78bd7f12633f2917a3 https://www.encodeproject.org/files/ENCFF001XPT/@@download/ENCFF001XPT.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF001XPU bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIZ 597292 John Stamatoyannopoulos, UW 154cd03f8564b69afd2fab7b0e276f47 https://www.encodeproject.org/files/ENCFF001XPU/@@download/ENCFF001XPU.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF002DCO bed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HIY, ENCFF001HIZ 986802 ENCODE Consortium Analysis Working Group 799bc6c3af731285c238b6574d7adfe2 https://www.encodeproject.org/files/ENCFF002DCO/@@download/ENCFF002DCO.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF600CYD bed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF684QJY, ENCFF777LEG, ENCFF934HQC 774082 ENCODE Processing Pipeline fd2626ac100b0ba6310845b7279141f3 https://www.encodeproject.org/files/ENCFF600CYD/@@download/ENCFF600CYD.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF777LEG bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF336OEL, ENCFF836ZOB 4170228 ENCODE Processing Pipeline 8edfc53b4aa11fcc23db79904e9f36ac https://www.encodeproject.org/files/ENCFF777LEG/@@download/ENCFF777LEG.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF934HQC bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF282WQV, ENCFF336OEL 4123469 ENCODE Processing Pipeline 64904a140fa902d972e18307cde4cf57 https://www.encodeproject.org/files/ENCFF934HQC/@@download/ENCFF934HQC.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF684QJY bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF282WQV, ENCFF336OEL, ENCFF836ZOB 4475215 ENCODE Processing Pipeline 2a794e215865e15e799ce6cdf497d713 https://www.encodeproject.org/files/ENCFF684QJY/@@download/ENCFF684QJY.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF183YLB bed narrowPeak conservative idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF684QJY, ENCFF777LEG, ENCFF934HQC 754900 ENCODE Processing Pipeline 243693669ba30f78534988f800b19fa5 https://www.encodeproject.org/files/ENCFF183YLB/@@download/ENCFF183YLB.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF312HCK bed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF729AWY, ENCFF892VYV, ENCFF994JFX 765148 ENCODE Processing Pipeline 9dd0d6cf8e5d23c421e1eeffab57d9d4 https://www.encodeproject.org/files/ENCFF312HCK/@@download/ENCFF312HCK.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF729AWY bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF644FRD, ENCFF686TPQ 4174778 ENCODE Processing Pipeline ace2ec52cf2dfa4692feb164ebf7958a https://www.encodeproject.org/files/ENCFF729AWY/@@download/ENCFF729AWY.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF994JFX bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF600BAG, ENCFF644FRD, ENCFF686TPQ 4476308 ENCODE Processing Pipeline 75b0297b5c49cec15ede77be88ed6d07 https://www.encodeproject.org/files/ENCFF994JFX/@@download/ENCFF994JFX.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF892VYV bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF600BAG, ENCFF686TPQ 4129203 ENCODE Processing Pipeline 02dc4390a46ee6a4603e44c91ca1a5b8 https://www.encodeproject.org/files/ENCFF892VYV/@@download/ENCFF892VYV.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF787GLH bed narrowPeak conservative idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF729AWY, ENCFF892VYV, ENCFF994JFX 753709 ENCODE Processing Pipeline beae2e60b294f0835e5ec9ef8d50968f https://www.encodeproject.org/files/ENCFF787GLH/@@download/ENCFF787GLH.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF001XRN bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOZ 983398 John Stamatoyannopoulos, UW 91a7ac063cf4a34835f9a8b007904e51 https://www.encodeproject.org/files/ENCFF001XRN/@@download/ENCFF001XRN.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF001XRO bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HPC 752910 John Stamatoyannopoulos, UW 486773dda7ef061e739fa0dfe708e4eb https://www.encodeproject.org/files/ENCFF001XRO/@@download/ENCFF001XRO.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF002DDB bed narrowPeak optimal idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HOZ, ENCFF001HPC 1121096 ENCODE Consortium Analysis Working Group 7622c2ed39a4594c2627b39e8f2a5075 https://www.encodeproject.org/files/ENCFF002DDB/@@download/ENCFF002DDB.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF493HJH bed narrowPeak optimal idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF214JJE, ENCFF419RSJ, ENCFF826PZY, ENCFF839YLN 878543 ENCODE Processing Pipeline 5d821a780af7f8f55050e670e0de57e3 https://www.encodeproject.org/files/ENCFF493HJH/@@download/ENCFF493HJH.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF826PZY bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF163IHR, ENCFF346OGN 4300158 ENCODE Processing Pipeline 42374d414caa6ea24b6e714d64623085 https://www.encodeproject.org/files/ENCFF826PZY/@@download/ENCFF826PZY.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF214JJE bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF163IHR, ENCFF559BCH 3702005 ENCODE Processing Pipeline cb2e8646aab384874b8cbc8832344bb6 https://www.encodeproject.org/files/ENCFF214JJE/@@download/ENCFF214JJE.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF839YLN bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF163IHR, ENCFF346OGN, ENCFF559BCH 4012866 ENCODE Processing Pipeline 1f4b61c6262c10d76a49e6387430c25a https://www.encodeproject.org/files/ENCFF839YLN/@@download/ENCFF839YLN.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF288RFS bed narrowPeak conservative idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF924YJI, ENCFF929WKT, ENCFF938HQH 889632 ENCODE Processing Pipeline 7ce3d71abd0220f4289d7b0aced11dc4 https://www.encodeproject.org/files/ENCFF288RFS/@@download/ENCFF288RFS.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF924YJI bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF268MTM, ENCFF620RYQ 3732065 ENCODE Processing Pipeline ff075a5e7ab0ae978f67ef3324dac57e https://www.encodeproject.org/files/ENCFF924YJI/@@download/ENCFF924YJI.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF929WKT bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF427ZOV, ENCFF620RYQ 4315314 ENCODE Processing Pipeline e4577815f1ab2bdb587257ef064d4803 https://www.encodeproject.org/files/ENCFF929WKT/@@download/ENCFF929WKT.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF938HQH bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF268MTM, ENCFF427ZOV, ENCFF620RYQ 4062652 ENCODE Processing Pipeline bab3d7d93eaba37b4816855ef65b0e0b https://www.encodeproject.org/files/ENCFF938HQH/@@download/ENCFF938HQH.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF001UTG bed narrowPeak peaks ENCSR000DMC ChIP-seq UBERON:0002113 kidney tissue adult male 27 year, 22 year, 35 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1290712 Vishwanath Iyer, UTA 6ba80d27e22dd023aa986abda961e8c1 https://www.encodeproject.org/files/ENCFF001UTG/@@download/ENCFF001UTG.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking missing derived_from insufficient read depth ENCFF001USV bed narrowPeak peaks ENCSR000DLO ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1481606 Vishwanath Iyer, UTA 96fd9d6f3d25f6cfd8b0b3a88de4b7b7 https://www.encodeproject.org/files/ENCFF001USV/@@download/ENCFF001USV.bed.gz hg19 archived mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF002DAU bed narrowPeak optimal idr thresholded peaks ENCSR000DLO ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1201558 ENCODE Consortium Analysis Working Group 041f68fd139c7973202a4cc25c950459 https://www.encodeproject.org/files/ENCFF002DAU/@@download/ENCFF002DAU.bed.gz hg19 archived mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF001XQX bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMW 574911 John Stamatoyannopoulos, UW 9bd5ffe43d837018ccaafa5789bb86ec https://www.encodeproject.org/files/ENCFF001XQX/@@download/ENCFF001XQX.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XQY bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HNA 851723 John Stamatoyannopoulos, UW 01250d7daafd7557c591fb9991464bb5 https://www.encodeproject.org/files/ENCFF001XQY/@@download/ENCFF001XQY.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCW bed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HMW, ENCFF001HNA 741203 ENCODE Consortium Analysis Working Group 616e2c2dddba644e8583216930f04db4 https://www.encodeproject.org/files/ENCFF002DCW/@@download/ENCFF002DCW.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF155DHA bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF639IFG 1773215 ENCODE Processing Pipeline 08c06e8338e994118dd421201622780e https://www.encodeproject.org/files/ENCFF155DHA/@@download/ENCFF155DHA.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF471EJJ bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF639IFG, ENCFF691NNZ 4132056 ENCODE Processing Pipeline 068d25c3c200f9790bc1b0ba4cde5794 https://www.encodeproject.org/files/ENCFF471EJJ/@@download/ENCFF471EJJ.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF154APE bed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF155DHA, ENCFF419RSJ, ENCFF471EJJ, ENCFF600JCP 631133 ENCODE Processing Pipeline 341543539827d1820a15c3813c78b171 https://www.encodeproject.org/files/ENCFF154APE/@@download/ENCFF154APE.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF600JCP bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF691NNZ 2425526 ENCODE Processing Pipeline 85dc2afa15ac3455715440ace1ba73fb https://www.encodeproject.org/files/ENCFF600JCP/@@download/ENCFF600JCP.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF913REJ bed narrowPeak conservative idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF155DHA, ENCFF419RSJ, ENCFF471EJJ, ENCFF600JCP 560800 ENCODE Processing Pipeline 3c5389afe7b67453c9ca531ad2b93873 https://www.encodeproject.org/files/ENCFF913REJ/@@download/ENCFF913REJ.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF830KSV bed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF155SMN, ENCFF242KOJ, ENCFF263ZIY 629516 ENCODE Processing Pipeline e3851124fbda85eda9007e79e17f7d74 https://www.encodeproject.org/files/ENCFF830KSV/@@download/ENCFF830KSV.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF155SMN bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF111FGZ, ENCFF122HJS, ENCFF872VKZ 4115754 ENCODE Processing Pipeline 26bd1ceb93390ab5c3465621b44443e2 https://www.encodeproject.org/files/ENCFF155SMN/@@download/ENCFF155SMN.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF242KOJ bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF111FGZ, ENCFF872VKZ 2425519 ENCODE Processing Pipeline 8245ad26b6b0b5b41a58e3cefc7efe07 https://www.encodeproject.org/files/ENCFF242KOJ/@@download/ENCFF242KOJ.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF971ESX bed narrowPeak conservative idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF155SMN, ENCFF242KOJ, ENCFF263ZIY 560689 ENCODE Processing Pipeline ff59a2162c5e3b7f35a700c61cadf433 https://www.encodeproject.org/files/ENCFF971ESX/@@download/ENCFF971ESX.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF263ZIY bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 immortalized cell line adult female 31 year Homo sapiens G1b CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF111FGZ, ENCFF122HJS 1727029 ENCODE Processing Pipeline 9907af9e5ad7594d5220fd9863fde372 https://www.encodeproject.org/files/ENCFF263ZIY/@@download/ENCFF263ZIY.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002CFD bed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 780549 ENCODE Consortium Analysis Working Group 5fa838083c1a254895f586ec45178b63 https://www.encodeproject.org/files/ENCFF002CFD/@@download/ENCFF002CFD.bed.gz hg19 archived low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF579SVE bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW 3874222 ENCODE Processing Pipeline 31eaaf5802f05cec71cf2321a2ddbcfb https://www.encodeproject.org/files/ENCFF579SVE/@@download/ENCFF579SVE.bed.gz hg19 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF180IOD bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF345IDF 1664046 ENCODE Processing Pipeline 25edd2cbc14db3f96a0fc4f8ec35b1b7 https://www.encodeproject.org/files/ENCFF180IOD/@@download/ENCFF180IOD.bed.gz hg19 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF005HNY bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW, ENCFF345IDF 4284571 ENCODE Processing Pipeline 0822ca9cddee08e6f193202d5cdeb019 https://www.encodeproject.org/files/ENCFF005HNY/@@download/ENCFF005HNY.bed.gz hg19 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF734DZF bed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF005HNY, ENCFF180IOD, ENCFF579SVE 632017 ENCODE Processing Pipeline 19b0f552c264539be3097aab1fcfe955 https://www.encodeproject.org/files/ENCFF734DZF/@@download/ENCFF734DZF.bed.gz hg19 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF368AKR bed narrowPeak conservative idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF005HNY, ENCFF180IOD, ENCFF579SVE 520614 ENCODE Processing Pipeline 9c3421e73d29f2634dabdb32969d091f https://www.encodeproject.org/files/ENCFF368AKR/@@download/ENCFF368AKR.bed.gz hg19 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF559FCZ bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1 ENCFF892QTE 3780369 ENCODE Processing Pipeline 73c6a620268dfd17f59a53086b00d54a https://www.encodeproject.org/files/ENCFF559FCZ/@@download/ENCFF559FCZ.bed.gz GRCh38 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF918YJO bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 2 ENCFF026AUZ 1686146 ENCODE Processing Pipeline 7d4754c3ae15ee4f77529e29c11887b0 https://www.encodeproject.org/files/ENCFF918YJO/@@download/ENCFF918YJO.bed.gz GRCh38 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF468JKI bed narrowPeak conservative idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF406DYX, ENCFF419RSJ, ENCFF559FCZ, ENCFF918YJO 512716 ENCODE Processing Pipeline edba1107a093c796e74ef2c70289df24 https://www.encodeproject.org/files/ENCFF468JKI/@@download/ENCFF468JKI.bed.gz GRCh38 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF406DYX bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF026AUZ, ENCFF892QTE 4242253 ENCODE Processing Pipeline 8a7f713bd6d06ce004129edab6212ceb https://www.encodeproject.org/files/ENCFF406DYX/@@download/ENCFF406DYX.bed.gz GRCh38 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF954FAQ bed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell adult, child male, female 11 year, 45 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF406DYX, ENCFF419RSJ, ENCFF559FCZ, ENCFF918YJO 614070 ENCODE Processing Pipeline ec43832906832df2baa44060eedc19cf https://www.encodeproject.org/files/ENCFF954FAQ/@@download/ENCFF954FAQ.bed.gz GRCh38 released low read depth, borderline replicate concordance, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF927GGF bed narrowPeak peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF007JEJ, ENCFF764UTK 6766708 ENCODE Processing Pipeline ae781c3f65e4bf41cd2ee0cd17f786da https://www.encodeproject.org/files/ENCFF927GGF/@@download/ENCFF927GGF.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF587LBC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF927GGF 859653 ENCODE Processing Pipeline 7449544ceaec3b1430764a81f0e71cd0 https://www.encodeproject.org/files/ENCFF587LBC/@@download/ENCFF587LBC.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF135EPC bed narrowPeak peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF295YCD, ENCFF379OME 6761456 ENCODE Processing Pipeline 3ad89978f11104ccee8217d1f7942f24 https://www.encodeproject.org/files/ENCFF135EPC/@@download/ENCFF135EPC.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF505VMB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF135EPC, ENCFF419RSJ 857565 ENCODE Processing Pipeline 6384886c5c5acda143d471df57a697c7 https://www.encodeproject.org/files/ENCFF505VMB/@@download/ENCFF505VMB.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF483ENA bed narrowPeak peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF225TLR, ENCFF942GWO 6460385 ENCODE Processing Pipeline 49e4b91ad490e293a8051bd802f597fc https://www.encodeproject.org/files/ENCFF483ENA/@@download/ENCFF483ENA.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF899MQP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF001TDO, ENCFF483ENA 743559 ENCODE Processing Pipeline d1218680f58548369a06ea439632e9ed https://www.encodeproject.org/files/ENCFF899MQP/@@download/ENCFF899MQP.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF341UHT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF072CBX, ENCFF419RSJ 733675 ENCODE Processing Pipeline 90ee7f4bf41e00ab797f4b0b9893c388 https://www.encodeproject.org/files/ENCFF341UHT/@@download/ENCFF341UHT.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF072CBX bed narrowPeak peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF447PIY, ENCFF662BKD 6438521 ENCODE Processing Pipeline 514692fd6c73c27ef7fa4ba291108acc https://www.encodeproject.org/files/ENCFF072CBX/@@download/ENCFF072CBX.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF704TBE bed narrowPeak peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-08 ENCODE 2 ENCFF365JBZ, ENCFF390SST 6296385 ENCODE Processing Pipeline 83f933092541f32cefad10061ea61bad https://www.encodeproject.org/files/ENCFF704TBE/@@download/ENCFF704TBE.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF782GCQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-08 ENCODE 2 ENCFF001TDO, ENCFF704TBE 525859 ENCODE Processing Pipeline 15b704945383ee7abba81084b173550d https://www.encodeproject.org/files/ENCFF782GCQ/@@download/ENCFF782GCQ.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF338TGS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-08 ENCODE 2 ENCFF419RSJ, ENCFF804QQN 551414 ENCODE Processing Pipeline 24ed4ced5266db6d5cb741d73385c28d https://www.encodeproject.org/files/ENCFF338TGS/@@download/ENCFF338TGS.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF804QQN bed narrowPeak peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-08 ENCODE 2 ENCFF189PXK, ENCFF529KBB 6348187 ENCODE Processing Pipeline 79eae8b0c6c43ab83356d2f99ecedfa0 https://www.encodeproject.org/files/ENCFF804QQN/@@download/ENCFF804QQN.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF246QUK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-08 ENCODE 2 ENCFF001TDO, ENCFF258KBF 561465 ENCODE Processing Pipeline aef6aba92976370dbdf8eb235a5fba29 https://www.encodeproject.org/files/ENCFF246QUK/@@download/ENCFF246QUK.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF258KBF bed narrowPeak peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-08 ENCODE 2 ENCFF550SXD, ENCFF827MXQ 6248779 ENCODE Processing Pipeline be3428ea336cd60cd52bdc1fcff809ef https://www.encodeproject.org/files/ENCFF258KBF/@@download/ENCFF258KBF.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF591PIT bed narrowPeak peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-08 ENCODE 2 ENCFF570KCI, ENCFF788IDQ 6293059 ENCODE Processing Pipeline 9266e4aa8a8da0e0471ac025872e8929 https://www.encodeproject.org/files/ENCFF591PIT/@@download/ENCFF591PIT.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF960TOX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-08 ENCODE 2 ENCFF419RSJ, ENCFF591PIT 573237 ENCODE Processing Pipeline 793db42fe0db03509d00886aa740c448 https://www.encodeproject.org/files/ENCFF960TOX/@@download/ENCFF960TOX.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF383NCL bed narrowPeak peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF553WEE, ENCFF773QXS 4852087 ENCODE Processing Pipeline 88ab6ea26eedfdb4b74aabdcc2816b3e https://www.encodeproject.org/files/ENCFF383NCL/@@download/ENCFF383NCL.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF054PUP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF383NCL 21696 ENCODE Processing Pipeline a18810fe60b1b0de416238125c99cf76 https://www.encodeproject.org/files/ENCFF054PUP/@@download/ENCFF054PUP.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF031IUJ bed narrowPeak peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF037IQW, ENCFF056EFI 4857427 ENCODE Processing Pipeline 100fdf8666c7c0724c1fc3a5523e3255 https://www.encodeproject.org/files/ENCFF031IUJ/@@download/ENCFF031IUJ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF992DNN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF031IUJ, ENCFF419RSJ 23286 ENCODE Processing Pipeline b75dcc6e0a7db973bcfac7d33e966a73 https://www.encodeproject.org/files/ENCFF992DNN/@@download/ENCFF992DNN.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF245IPV bed narrowPeak peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF460DKV, ENCFF565VSK 6203883 ENCODE Processing Pipeline 486085900f1e799fbf005557f81f9503 https://www.encodeproject.org/files/ENCFF245IPV/@@download/ENCFF245IPV.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF603KUP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF001TDO, ENCFF245IPV 584980 ENCODE Processing Pipeline 3f38d4766c990384b9a026f9a7e38585 https://www.encodeproject.org/files/ENCFF603KUP/@@download/ENCFF603KUP.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF490PIH bed narrowPeak peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF551QCP, ENCFF983YSS 6207428 ENCODE Processing Pipeline 5173365e3a51bbed46694aa5f02833d1 https://www.encodeproject.org/files/ENCFF490PIH/@@download/ENCFF490PIH.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF951SRP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF419RSJ, ENCFF490PIH 581481 ENCODE Processing Pipeline 529d042fdf32c85419a95d5c3e9e0954 https://www.encodeproject.org/files/ENCFF951SRP/@@download/ENCFF951SRP.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF002CEH bed narrowPeak optimal idr thresholded peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell newborn unknown unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 766613 ENCODE Consortium Analysis Working Group 79618d0c39b6e86ab98478f10c438082 https://www.encodeproject.org/files/ENCFF002CEH/@@download/ENCFF002CEH.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length mismatched file status, missing derived_from insufficient read depth ENCFF001XSH bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HRO 880093 John Stamatoyannopoulos, UW 93514248ac0350e0a0c0d14b2c3bad78 https://www.encodeproject.org/files/ENCFF001XSH/@@download/ENCFF001XSH.bed.gz hg19 archived inconsistent platforms, low read depth, low read length ENCFF001XSI bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRS 739159 John Stamatoyannopoulos, UW 8e787dcbcdc51b6995672783275ae189 https://www.encodeproject.org/files/ENCFF001XSI/@@download/ENCFF001XSI.bed.gz hg19 archived inconsistent platforms, low read depth, low read length ENCFF002DDG bed narrowPeak optimal idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HRO, ENCFF001HRS 1184350 ENCODE Consortium Analysis Working Group 129a0f5bb7fcab4c455672663f493192 https://www.encodeproject.org/files/ENCFF002DDG/@@download/ENCFF002DDG.bed.gz hg19 archived inconsistent platforms, low read depth, low read length ENCFF184NDC bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419THA, ENCFF477ASU 4383617 ENCODE Processing Pipeline 147fc6f3724af90fb223bff53f3a74f2 https://www.encodeproject.org/files/ENCFF184NDC/@@download/ENCFF184NDC.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF975BQZ bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF419THA, ENCFF720GUI 4058391 ENCODE Processing Pipeline c005efe980283111585915634e334c40 https://www.encodeproject.org/files/ENCFF975BQZ/@@download/ENCFF975BQZ.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF409DTL bed narrowPeak optimal idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF184NDC, ENCFF237DEX, ENCFF419RSJ, ENCFF975BQZ 913924 ENCODE Processing Pipeline b7329f28a94df4a1a583033b8acde743 https://www.encodeproject.org/files/ENCFF409DTL/@@download/ENCFF409DTL.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF237DEX bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419THA, ENCFF477ASU, ENCFF720GUI 4675023 ENCODE Processing Pipeline 27290c38f226f65fe136e2f1078234e2 https://www.encodeproject.org/files/ENCFF237DEX/@@download/ENCFF237DEX.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF647XYZ bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF178SLS, ENCFF831AXW, ENCFF919KWN 4668579 ENCODE Processing Pipeline af8aa51de44a60e2a7f1c29720a9219f https://www.encodeproject.org/files/ENCFF647XYZ/@@download/ENCFF647XYZ.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF139DOR bed narrowPeak conservative idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF412BGE, ENCFF647XYZ, ENCFF695UND 908206 ENCODE Processing Pipeline 0a252ead988d04608f92e283a28c1b6c https://www.encodeproject.org/files/ENCFF139DOR/@@download/ENCFF139DOR.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF412BGE bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF178SLS, ENCFF831AXW 4375823 ENCODE Processing Pipeline 6757cdb64666a5a94b6ff783a457ba11 https://www.encodeproject.org/files/ENCFF412BGE/@@download/ENCFF412BGE.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF695UND bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF831AXW, ENCFF919KWN 4061971 ENCODE Processing Pipeline ffd4adf0bdeb412ece0eb94210206d9e https://www.encodeproject.org/files/ENCFF695UND/@@download/ENCFF695UND.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF001VLP bed narrowPeak peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1032556 Michael Snyder, Stanford 0844adeaa2583de315eee3804e91b158 https://www.encodeproject.org/files/ENCFF001VLP/@@download/ENCFF001VLP.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample, missing derived_from ENCFF002CVH bed narrowPeak optimal idr thresholded peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1000229 ENCODE Consortium Analysis Working Group 2ef1d56d5777c1eec6dc2433a3cfb1ba https://www.encodeproject.org/files/ENCFF002CVH/@@download/ENCFF002CVH.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample, missing derived_from ENCFF070OIO bed narrowPeak peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 4526183 ENCODE Processing Pipeline 5e6f91d553784df46f528446508d89e0 https://www.encodeproject.org/files/ENCFF070OIO/@@download/ENCFF070OIO.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample ENCFF719YRP bed narrowPeak peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG 4541725 ENCODE Processing Pipeline be07150654ff67560989d7344ad9ffe7 https://www.encodeproject.org/files/ENCFF719YRP/@@download/ENCFF719YRP.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample ENCFF598QPN bed narrowPeak peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 5101450 ENCODE Processing Pipeline bfc5ce2bfdc0aa2614b765f74660815b https://www.encodeproject.org/files/ENCFF598QPN/@@download/ENCFF598QPN.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample ENCFF307XFM bed narrowPeak optimal idr thresholded peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF034ZTP, ENCFF120JMB, ENCFF362RJA, ENCFF419RSJ 749871 ENCODE Processing Pipeline f60418b9e2d782a74e0696aaeaa1c570 https://www.encodeproject.org/files/ENCFF307XFM/@@download/ENCFF307XFM.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample ENCFF034ZTP bed narrowPeak peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1 ENCFF010FWV 4524130 ENCODE Processing Pipeline e064e52a9e2b57a57719275e623a419e https://www.encodeproject.org/files/ENCFF034ZTP/@@download/ENCFF034ZTP.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample ENCFF453XKM bed narrowPeak conservative idr thresholded peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF070OIO, ENCFF598QPN, ENCFF719YRP 749002 ENCODE Processing Pipeline 7012df7b06605f9a5fb69695e1a4178e https://www.encodeproject.org/files/ENCFF453XKM/@@download/ENCFF453XKM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample ENCFF362RJA bed narrowPeak peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 2 ENCFF431WUY 4540842 ENCODE Processing Pipeline f90c7e630d7e42be292fcfd9b73e322f https://www.encodeproject.org/files/ENCFF362RJA/@@download/ENCFF362RJA.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample ENCFF120JMB bed narrowPeak peaks ENCSR000EFI ChIP-seq NTR:0004647 IMR-90 primary cell fetal female 16 week Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF010FWV, ENCFF431WUY 5101127 ENCODE Processing Pipeline 2e110a36c4f8ddcae5dddfca768d5298 https://www.encodeproject.org/files/ENCFF120JMB/@@download/ENCFF120JMB.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample, biological replicates with identical biosample ENCFF001USM bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1123946 Vishwanath Iyer, UTA 6a2827fa697268cc04fce7b8ecc31f4d https://www.encodeproject.org/files/ENCFF001USM/@@download/ENCFF001USM.bed.gz hg19 archived low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF437WQX bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF068ETE 3519931 ENCODE Processing Pipeline e495a245b11ec2ef6ace87c8bb44ecfb https://www.encodeproject.org/files/ENCFF437WQX/@@download/ENCFF437WQX.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF048QCW bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF418UZJ 3849264 ENCODE Processing Pipeline 694dedd1519c16ed74345f64da88d188 https://www.encodeproject.org/files/ENCFF048QCW/@@download/ENCFF048QCW.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF803RRC bed narrowPeak conservative idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF048QCW, ENCFF419RSJ, ENCFF437WQX, ENCFF475TXE 622957 ENCODE Processing Pipeline 9f3316d9fc5cec562b79391b81f45466 https://www.encodeproject.org/files/ENCFF803RRC/@@download/ENCFF803RRC.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF475TXE bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF068ETE, ENCFF418UZJ 4082046 ENCODE Processing Pipeline 05cada44df5f7ede630f544e358ae8d4 https://www.encodeproject.org/files/ENCFF475TXE/@@download/ENCFF475TXE.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF084FRB bed narrowPeak optimal idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF048QCW, ENCFF419RSJ, ENCFF437WQX, ENCFF475TXE 766109 ENCODE Processing Pipeline 121de95107b851aa6a14f19063df7be6 https://www.encodeproject.org/files/ENCFF084FRB/@@download/ENCFF084FRB.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF637DKG bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF085RVS, ENCFF370KVW 3805942 ENCODE Processing Pipeline 9e3e71ffed5f1b3f95cbd6697a875fcb https://www.encodeproject.org/files/ENCFF637DKG/@@download/ENCFF637DKG.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF445ATY bed narrowPeak optimal idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF336VRJ, ENCFF637DKG, ENCFF807PRZ 750841 ENCODE Processing Pipeline 9cb6f944b978f18fb4831d56fa835b97 https://www.encodeproject.org/files/ENCFF445ATY/@@download/ENCFF445ATY.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF336VRJ bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF075LLZ, ENCFF085RVS 3514521 ENCODE Processing Pipeline 1c0b9cf2b391dac91f5c84942cb675da https://www.encodeproject.org/files/ENCFF336VRJ/@@download/ENCFF336VRJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF807PRZ bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF075LLZ, ENCFF085RVS, ENCFF370KVW 4049541 ENCODE Processing Pipeline 6304849b8124555f72beb3542d641da1 https://www.encodeproject.org/files/ENCFF807PRZ/@@download/ENCFF807PRZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF658AFN bed narrowPeak conservative idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 immortalized cell line unknown female 20 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF336VRJ, ENCFF637DKG, ENCFF807PRZ 612307 ENCODE Processing Pipeline e2347e9a0cb0f46856cf4d469b03bbbe https://www.encodeproject.org/files/ENCFF658AFN/@@download/ENCFF658AFN.bed.gz hg19 released low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF520JZM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF747PUI 700769 ENCODE Processing Pipeline 12909e8208754d0c074e96cab115db3e https://www.encodeproject.org/files/ENCFF520JZM/@@download/ENCFF520JZM.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF747PUI bed narrowPeak peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF300XKS, ENCFF336YLG 6466857 ENCODE Processing Pipeline cffd4c21e3adb5a3b1c38609954c2b86 https://www.encodeproject.org/files/ENCFF747PUI/@@download/ENCFF747PUI.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF866OIP bed narrowPeak peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF578UPT, ENCFF700NXF 6469462 ENCODE Processing Pipeline 1797131b6da7c64f0cf649cc0b25fac7 https://www.encodeproject.org/files/ENCFF866OIP/@@download/ENCFF866OIP.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF728IYI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF866OIP 704227 ENCODE Processing Pipeline ca9907396aa7d5df6f7a51367dbf6b5b https://www.encodeproject.org/files/ENCFF728IYI/@@download/ENCFF728IYI.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF240CUH bed narrowPeak peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF134TXS, ENCFF472GUK 6440167 ENCODE Processing Pipeline f63e36ef8a94a89e79f64f0f475475af https://www.encodeproject.org/files/ENCFF240CUH/@@download/ENCFF240CUH.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF761JIU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF240CUH 621392 ENCODE Processing Pipeline 22916e6d5db3f56535ec1daef61748fc https://www.encodeproject.org/files/ENCFF761JIU/@@download/ENCFF761JIU.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF946ALH bed narrowPeak peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF415FHO, ENCFF640XYK 6434084 ENCODE Processing Pipeline 9cf7c27f0f6616e510f049af5e4ccba1 https://www.encodeproject.org/files/ENCFF946ALH/@@download/ENCFF946ALH.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF661IIS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF946ALH 612114 ENCODE Processing Pipeline 7236890214943b71926b7dbc8ac428e9 https://www.encodeproject.org/files/ENCFF661IIS/@@download/ENCFF661IIS.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF358WEO bed narrowPeak peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF224VJS, ENCFF452PDJ 5904460 ENCODE Processing Pipeline 8fedf1fed21537f0ab034742414c07aa https://www.encodeproject.org/files/ENCFF358WEO/@@download/ENCFF358WEO.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF459AHK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF358WEO 360600 ENCODE Processing Pipeline b051220424422f92963d3a5e003ec8b6 https://www.encodeproject.org/files/ENCFF459AHK/@@download/ENCFF459AHK.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF340BQM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF596RDA 344486 ENCODE Processing Pipeline b31bacc4eb2d2682e5055ea54e1c03f1 https://www.encodeproject.org/files/ENCFF340BQM/@@download/ENCFF340BQM.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF596RDA bed narrowPeak peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF514CZN, ENCFF592PPU 5863535 ENCODE Processing Pipeline 565300883f54120a65d32590e9d2d310 https://www.encodeproject.org/files/ENCFF596RDA/@@download/ENCFF596RDA.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF237NQY bed narrowPeak peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF792NXA, ENCFF947XNG 6388761 ENCODE Processing Pipeline 47941d70f95744de2f455d8fed7735ef https://www.encodeproject.org/files/ENCFF237NQY/@@download/ENCFF237NQY.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF261BWI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF237NQY 453642 ENCODE Processing Pipeline 275d239b4a18b95aa4b605a4a1acbedf https://www.encodeproject.org/files/ENCFF261BWI/@@download/ENCFF261BWI.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF886WWT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF786QZK 431460 ENCODE Processing Pipeline 8c31e9ec6422c5d8073767e065581693 https://www.encodeproject.org/files/ENCFF886WWT/@@download/ENCFF886WWT.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF786QZK bed narrowPeak peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF550JLY, ENCFF563SSP 6349253 ENCODE Processing Pipeline b23d9988deb63773b95db0e9fcf1d71f https://www.encodeproject.org/files/ENCFF786QZK/@@download/ENCFF786QZK.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF841AAT bed narrowPeak peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF124ZGE, ENCFF607WQU 6015202 ENCODE Processing Pipeline 9ddcc6027bf7eaea56c318593127e9ba https://www.encodeproject.org/files/ENCFF841AAT/@@download/ENCFF841AAT.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF610UCL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF841AAT 564432 ENCODE Processing Pipeline f71a8d88f791f9fbdafa4bdea5e50f1a https://www.encodeproject.org/files/ENCFF610UCL/@@download/ENCFF610UCL.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF622QGA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF263MVV 842438 ENCODE Processing Pipeline 0ccf339db1698f8f69bbfebac6687253 https://www.encodeproject.org/files/ENCFF622QGA/@@download/ENCFF622QGA.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF263MVV bed narrowPeak peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF244RSE, ENCFF639BGL 5954022 ENCODE Processing Pipeline c1d52c20c5dfa9e2c17b268a4a309f4a https://www.encodeproject.org/files/ENCFF263MVV/@@download/ENCFF263MVV.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF001XRH bed narrowPeak peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HOF 680973 John Stamatoyannopoulos, UW a385ae340290877f3ab426ab963fb6b5 https://www.encodeproject.org/files/ENCFF001XRH/@@download/ENCFF001XRH.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF001XRI bed narrowPeak peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HOK 628952 John Stamatoyannopoulos, UW fc8449d17a3d6ee29ddeae78fd707736 https://www.encodeproject.org/files/ENCFF001XRI/@@download/ENCFF001XRI.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF002DCZ bed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HOF, ENCFF001HOK 907794 ENCODE Consortium Analysis Working Group b733a057cca5f0d58d39b49e4d4999ef https://www.encodeproject.org/files/ENCFF002DCZ/@@download/ENCFF002DCZ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF777FSS bed narrowPeak peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF198DHL, ENCFF580BHF 4461725 ENCODE Processing Pipeline b783794844073f2d6fd7f91e69bd81a2 https://www.encodeproject.org/files/ENCFF777FSS/@@download/ENCFF777FSS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF683OHM bed narrowPeak peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF060JAA, ENCFF198DHL, ENCFF580BHF 4596851 ENCODE Processing Pipeline e94b976d955ff66be7f9bd883644f91b https://www.encodeproject.org/files/ENCFF683OHM/@@download/ENCFF683OHM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF211MMB bed narrowPeak peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF060JAA, ENCFF198DHL 4437499 ENCODE Processing Pipeline 7cfbed440f61158aeef30feba19472d0 https://www.encodeproject.org/files/ENCFF211MMB/@@download/ENCFF211MMB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF557WBC bed narrowPeak peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF208QQC 4453892 ENCODE Processing Pipeline 926c944a4d317e2935d48c3895b63e25 https://www.encodeproject.org/files/ENCFF557WBC/@@download/ENCFF557WBC.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF430EIY bed narrowPeak conservative idr thresholded peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF211MMB, ENCFF683OHM, ENCFF777FSS 651964 ENCODE Processing Pipeline 6eeb0435eee8ddc73dfa8c071d9b9546 https://www.encodeproject.org/files/ENCFF430EIY/@@download/ENCFF430EIY.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF523OCI bed narrowPeak peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF115QJZ 4453213 ENCODE Processing Pipeline fca3129b0cb5b0f9cffa98ef51035af9 https://www.encodeproject.org/files/ENCFF523OCI/@@download/ENCFF523OCI.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF282QFS bed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF211MMB, ENCFF683OHM, ENCFF777FSS 658629 ENCODE Processing Pipeline 5cb966acd351fac7cc8466d60a973372 https://www.encodeproject.org/files/ENCFF282QFS/@@download/ENCFF282QFS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF420JAA bed narrowPeak peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF115QJZ, ENCFF208QQC 4578988 ENCODE Processing Pipeline 61e90b4c6a18f48b85f616bc669ceec5 https://www.encodeproject.org/files/ENCFF420JAA/@@download/ENCFF420JAA.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF401MQL bed narrowPeak conservative idr thresholded peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF420JAA, ENCFF523OCI, ENCFF557WBC 649474 ENCODE Processing Pipeline 9dabac96e36309ed65dc1cb289c51079 https://www.encodeproject.org/files/ENCFF401MQL/@@download/ENCFF401MQL.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF750KVF bed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq NTR:0004646 HFF-Myc primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF420JAA, ENCFF523OCI, ENCFF557WBC 651805 ENCODE Processing Pipeline 1d2b07e126b8f68833a01e56d447c465 https://www.encodeproject.org/files/ENCFF750KVF/@@download/ENCFF750KVF.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length NTR biosample ENCFF001XPX bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HJN 1190726 John Stamatoyannopoulos, UW 7f24fb2058862c3a740093c73d2d45a8 https://www.encodeproject.org/files/ENCFF001XPX/@@download/ENCFF001XPX.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF001XPY bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HJM 744052 John Stamatoyannopoulos, UW be40ff7b27fab09884f1348c4f84eaa2 https://www.encodeproject.org/files/ENCFF001XPY/@@download/ENCFF001XPY.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF002DCP bed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HJM, ENCFF001HJN 1165376 ENCODE Consortium Analysis Working Group 6be1b61f130ab7cd7c7fca31d9c6b187 https://www.encodeproject.org/files/ENCFF002DCP/@@download/ENCFF002DCP.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF222LZR bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF092GCH, ENCFF778CXN 4671117 ENCODE Processing Pipeline c0d8191b3470523ba74e80141ecd67e9 https://www.encodeproject.org/files/ENCFF222LZR/@@download/ENCFF222LZR.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF113ITH bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF092GCH, ENCFF217JIP 4043793 ENCODE Processing Pipeline b90920bb9880c5fd648f636fc9d48cdf https://www.encodeproject.org/files/ENCFF113ITH/@@download/ENCFF113ITH.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF163DTZ bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF092GCH, ENCFF217JIP, ENCFF778CXN 4868345 ENCODE Processing Pipeline 5783803a1f4cb53cd388d2fcd465ee71 https://www.encodeproject.org/files/ENCFF163DTZ/@@download/ENCFF163DTZ.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF065LHJ bed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF113ITH, ENCFF163DTZ, ENCFF222LZR 978732 ENCODE Processing Pipeline 75759957f5c6749d741f15b5790add81 https://www.encodeproject.org/files/ENCFF065LHJ/@@download/ENCFF065LHJ.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF445DAX bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF828OEW 4668638 ENCODE Processing Pipeline 103bd673582317c35eaa3aea6eca014c https://www.encodeproject.org/files/ENCFF445DAX/@@download/ENCFF445DAX.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF526FCP bed narrowPeak conservative idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF113ITH, ENCFF163DTZ, ENCFF222LZR 873259 ENCODE Processing Pipeline b42d3b4ac94ff525a75baae34df37685 https://www.encodeproject.org/files/ENCFF526FCP/@@download/ENCFF526FCP.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF349NBF bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF573EJQ, ENCFF828OEW 4843158 ENCODE Processing Pipeline 14de7ab6f5068d5451a1598066fa227c https://www.encodeproject.org/files/ENCFF349NBF/@@download/ENCFF349NBF.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF991SLN bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF573EJQ 4053410 ENCODE Processing Pipeline 08efdcc2e620c599aa30fffcadc89d1a https://www.encodeproject.org/files/ENCFF991SLN/@@download/ENCFF991SLN.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF399PNA bed narrowPeak conservative idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF349NBF, ENCFF419RSJ, ENCFF445DAX, ENCFF991SLN 869817 ENCODE Processing Pipeline 9f6cfb1bd8957921c0e90b47e92e701b https://www.encodeproject.org/files/ENCFF399PNA/@@download/ENCFF399PNA.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF427RYJ bed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF349NBF, ENCFF419RSJ, ENCFF445DAX, ENCFF991SLN 973789 ENCODE Processing Pipeline 7c0c7396c10d7d834583f8cc90cc238e https://www.encodeproject.org/files/ENCFF427RYJ/@@download/ENCFF427RYJ.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF001XTD bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUP 790660 John Stamatoyannopoulos, UW d4ea64eaea2f05ee0678a03549222ff0 https://www.encodeproject.org/files/ENCFF001XTD/@@download/ENCFF001XTD.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF001XTE bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HUQ 647688 John Stamatoyannopoulos, UW f866d5f14382ccd11bfb96f4ca5cadb0 https://www.encodeproject.org/files/ENCFF001XTE/@@download/ENCFF001XTE.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF002DDM bed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HUP, ENCFF001HUQ 955296 ENCODE Consortium Analysis Working Group bf6c3602c84abce53f0b5d69f870ce34 https://www.encodeproject.org/files/ENCFF002DDM/@@download/ENCFF002DDM.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF683BND bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF162IBF, ENCFF568DKF 4720509 ENCODE Processing Pipeline acacafe644a7c1d953ed936107b9ca3b https://www.encodeproject.org/files/ENCFF683BND/@@download/ENCFF683BND.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF290QTC bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF162IBF, ENCFF987CLO 4172588 ENCODE Processing Pipeline c83f9d4b944561148e95b446b35f20b5 https://www.encodeproject.org/files/ENCFF290QTC/@@download/ENCFF290QTC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF947TJH bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF162IBF, ENCFF568DKF, ENCFF987CLO 5212999 ENCODE Processing Pipeline 0088115db0a2e091fabd1c179fbe50b0 https://www.encodeproject.org/files/ENCFF947TJH/@@download/ENCFF947TJH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF275AVH bed narrowPeak conservative idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF290QTC, ENCFF683BND, ENCFF947TJH 759902 ENCODE Processing Pipeline da0d2fa116262fea26d27d7993b85cbd https://www.encodeproject.org/files/ENCFF275AVH/@@download/ENCFF275AVH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF337WIE bed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF290QTC, ENCFF683BND, ENCFF947TJH 782984 ENCODE Processing Pipeline b3d90d4e894ae83cd81c99c55fc84db1 https://www.encodeproject.org/files/ENCFF337WIE/@@download/ENCFF337WIE.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF038NKL bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF775ONC 4168658 ENCODE Processing Pipeline ecc72bbfb563f0f2394bba011585a2b2 https://www.encodeproject.org/files/ENCFF038NKL/@@download/ENCFF038NKL.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF450QPN bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF219PMT, ENCFF775ONC 5232355 ENCODE Processing Pipeline 27cc00ada956de142c7af9ef379009dc https://www.encodeproject.org/files/ENCFF450QPN/@@download/ENCFF450QPN.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF280ZQP bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF219PMT 4709055 ENCODE Processing Pipeline cf49a04edca656f9844af95e69449a9e https://www.encodeproject.org/files/ENCFF280ZQP/@@download/ENCFF280ZQP.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF498QCT bed narrowPeak conservative idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF038NKL, ENCFF280ZQP, ENCFF419RSJ, ENCFF450QPN 768369 ENCODE Processing Pipeline 775fb63e099a09f10739333a7c2b20d2 https://www.encodeproject.org/files/ENCFF498QCT/@@download/ENCFF498QCT.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF178FRI bed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell postnatal male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF038NKL, ENCFF280ZQP, ENCFF419RSJ, ENCFF450QPN 789090 ENCODE Processing Pipeline c66a7ccb0d0d154d1fc66771dd548303 https://www.encodeproject.org/files/ENCFF178FRI/@@download/ENCFF178FRI.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking, low read length ENCFF001UTH bed narrowPeak peaks ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1265974 Vishwanath Iyer, UTA f8f3b52f1d1a700e914ecf1756f6cea7 https://www.encodeproject.org/files/ENCFF001UTH/@@download/ENCFF001UTH.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001USQ bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1237271 Vishwanath Iyer, UTA 77b2e33066eabb4c798a3872b8a72c11 https://www.encodeproject.org/files/ENCFF001USQ/@@download/ENCFF001USQ.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF131ZPD bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF875VWC 3227495 ENCODE Processing Pipeline 1e9fd859c4e31fc5c44e9c4fae29a33d https://www.encodeproject.org/files/ENCFF131ZPD/@@download/ENCFF131ZPD.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF479GJB bed narrowPeak conservative idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF093ETZ, ENCFF131ZPD, ENCFF419RSJ, ENCFF493EUG 388452 ENCODE Processing Pipeline 71b6d34c5fc4269518ab35159c332110 https://www.encodeproject.org/files/ENCFF479GJB/@@download/ENCFF479GJB.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF493EUG bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF903YUY 3525235 ENCODE Processing Pipeline 7816ba9b55bf654e82bee1da79fcbde1 https://www.encodeproject.org/files/ENCFF493EUG/@@download/ENCFF493EUG.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF093ETZ bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF875VWC, ENCFF903YUY 3578266 ENCODE Processing Pipeline 43795ae8cdba11fa9566104ce7be46e2 https://www.encodeproject.org/files/ENCFF093ETZ/@@download/ENCFF093ETZ.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF419PTP bed narrowPeak optimal idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF093ETZ, ENCFF131ZPD, ENCFF419RSJ, ENCFF493EUG 451588 ENCODE Processing Pipeline 442c64038f2335181ba2a1b90aae03fc https://www.encodeproject.org/files/ENCFF419PTP/@@download/ENCFF419PTP.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF244DQW bed narrowPeak optimal idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF128FLJ, ENCFF192ODH, ENCFF780CML 438676 ENCODE Processing Pipeline 0c21dfd74bd1ff0c763735b180ac1d59 https://www.encodeproject.org/files/ENCFF244DQW/@@download/ENCFF244DQW.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF780CML bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF314ZWW, ENCFF965VPN 3514368 ENCODE Processing Pipeline 3cd259133842ffbef6039da97281c1c6 https://www.encodeproject.org/files/ENCFF780CML/@@download/ENCFF780CML.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF192ODH bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF314ZWW, ENCFF583JRS, ENCFF965VPN 3542837 ENCODE Processing Pipeline 6185c1750a46c9f00a7f1185ae970f5c https://www.encodeproject.org/files/ENCFF192ODH/@@download/ENCFF192ODH.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF469IRQ bed narrowPeak conservative idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF128FLJ, ENCFF192ODH, ENCFF780CML 375569 ENCODE Processing Pipeline 523606adaec751c03dfbde0e633fb8b4 https://www.encodeproject.org/files/ENCFF469IRQ/@@download/ENCFF469IRQ.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF128FLJ bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 immortalized cell line child male 1 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF314ZWW, ENCFF583JRS 3202670 ENCODE Processing Pipeline 6b23ef5f49d5867875852f50eb8c9c2c https://www.encodeproject.org/files/ENCFF128FLJ/@@download/ENCFF128FLJ.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF002CEL bed narrowPeak optimal idr thresholded peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1231983 ENCODE Consortium Analysis Working Group 7ddb20610be6d90b16f37e167c79f019 https://www.encodeproject.org/files/ENCFF002CEL/@@download/ENCFF002CEL.bed.gz hg19 released mixed read lengths, inconsistent platforms, mild to moderate bottlenecking, low read length missing unfiltered alignments, missing derived_from insufficient read depth ENCFF044KHD bed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1 ENCFF392XRJ, ENCFF871GXE 3101805 ENCODE Processing Pipeline 2f2f9c0d38ebdeedb1c72d8c0b009710 https://www.encodeproject.org/files/ENCFF044KHD/@@download/ENCFF044KHD.bed.gz GRCh38 released mixed read lengths, inconsistent platforms, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF712ETC bed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 2 ENCFF392XRJ, ENCFF550BMQ 4160754 ENCODE Processing Pipeline 03ad07720a9d5b9f61893c2ca50a10a2 https://www.encodeproject.org/files/ENCFF712ETC/@@download/ENCFF712ETC.bed.gz GRCh38 released mixed read lengths, inconsistent platforms, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF519CXF bed narrowPeak optimal idr thresholded peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF044KHD, ENCFF419RSJ, ENCFF712ETC, ENCFF873LHT 873695 ENCODE Processing Pipeline 7828af6ccfcb579226ce54757b98f05b https://www.encodeproject.org/files/ENCFF519CXF/@@download/ENCFF519CXF.bed.gz GRCh38 released mixed read lengths, inconsistent platforms, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF873LHT bed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF392XRJ, ENCFF550BMQ, ENCFF871GXE 5360130 ENCODE Processing Pipeline 4d84d257fff852f460889186b6e3f077 https://www.encodeproject.org/files/ENCFF873LHT/@@download/ENCFF873LHT.bed.gz GRCh38 released mixed read lengths, inconsistent platforms, mild to moderate bottlenecking, low read length missing unfiltered alignments insufficient read depth ENCFF508LBP bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 7137866 ENCODE Processing Pipeline aae0298678f287cb1ba69c6b6b52ea88 https://www.encodeproject.org/files/ENCFF508LBP/@@download/ENCFF508LBP.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF465DTB bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF401UTY, ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 7209998 ENCODE Processing Pipeline a8611b64685e6f2d499a3170f3e988f6 https://www.encodeproject.org/files/ENCFF465DTB/@@download/ENCFF465DTB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF723XDD bed narrowPeak conservative idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF328CFX, ENCFF465DTB, ENCFF508LBP 1649300 ENCODE Processing Pipeline 9f8389f107a407b2566f196bb42ba2ae https://www.encodeproject.org/files/ENCFF723XDD/@@download/ENCFF723XDD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF658MKE bed narrowPeak optimal idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF328CFX, ENCFF465DTB, ENCFF508LBP 1695710 ENCODE Processing Pipeline 262873360f58bf6d1bee505e706eb21c https://www.encodeproject.org/files/ENCFF658MKE/@@download/ENCFF658MKE.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF328CFX bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF401UTY, ENCFF801WHL, ENCFF923EBC 7136440 ENCODE Processing Pipeline 810236d029fcaf78be8fa13ce6816e7d https://www.encodeproject.org/files/ENCFF328CFX/@@download/ENCFF328CFX.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF058UJL bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF244UGL, ENCFF852QTC, ENCFF936NPT, ENCFF980IJT 7118156 ENCODE Processing Pipeline 3d128006acbfb3021bddb79ada6eeff4 https://www.encodeproject.org/files/ENCFF058UJL/@@download/ENCFF058UJL.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF604GXC bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF244UGL, ENCFF852QTC, ENCFF980IJT 7054550 ENCODE Processing Pipeline 2f36b2cd5be44897ae4e1f030dfa2b36 https://www.encodeproject.org/files/ENCFF604GXC/@@download/ENCFF604GXC.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF822EPQ bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF244UGL, ENCFF936NPT, ENCFF980IJT 7096278 ENCODE Processing Pipeline de58e235c2beafd4cf709c2bfde2b0b0 https://www.encodeproject.org/files/ENCFF822EPQ/@@download/ENCFF822EPQ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF880LTL bed narrowPeak conservative idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF058UJL, ENCFF419RSJ, ENCFF604GXC, ENCFF822EPQ 1633166 ENCODE Processing Pipeline c133d23bc31df0a751e63d33bd146d73 https://www.encodeproject.org/files/ENCFF880LTL/@@download/ENCFF880LTL.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF675JFN bed narrowPeak optimal idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF058UJL, ENCFF419RSJ, ENCFF604GXC, ENCFF822EPQ 1676597 ENCODE Processing Pipeline cb14c6d7011d12cb9214edc4db0d8f2b https://www.encodeproject.org/files/ENCFF675JFN/@@download/ENCFF675JFN.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO ENCFF001USJ bed narrowPeak peaks ENCSR000DKX ChIP-seq EFO:0002785 GM12891 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1218047 Vishwanath Iyer, UTA 9c8ce6b60bbee76bcc1d88097bdf6705 https://www.encodeproject.org/files/ENCFF001USJ/@@download/ENCFF001USJ.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF002DAL bed narrowPeak optimal idr thresholded peaks ENCSR000DKX ChIP-seq EFO:0002785 GM12891 immortalized cell line unknown male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 814748 ENCODE Consortium Analysis Working Group 4d21e78724db20ed62d597b5532743a0 https://www.encodeproject.org/files/ENCFF002DAL/@@download/ENCFF002DAL.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF615UXP bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 2 ENCFF011USL, ENCFF113PTE, ENCFF761NWZ 7037910 ENCODE Processing Pipeline addba1fd536484c460b922872ee88e88 https://www.encodeproject.org/files/ENCFF615UXP/@@download/ENCFF615UXP.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF144QCV bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 1, 2 ENCFF011USL, ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 7087126 ENCODE Processing Pipeline c557c915a9901ce377ef724806ff7a2c https://www.encodeproject.org/files/ENCFF144QCV/@@download/ENCFF144QCV.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF887CGM bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 7126902 ENCODE Processing Pipeline 6a916111c34985eec52fd3cc0dfa49ba https://www.encodeproject.org/files/ENCFF887CGM/@@download/ENCFF887CGM.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF522REY bed narrowPeak conservative idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF144QCV, ENCFF615UXP, ENCFF887CGM 1526942 ENCODE Processing Pipeline 0b34fe2ec37aa24ec9f68df9b28c657b https://www.encodeproject.org/files/ENCFF522REY/@@download/ENCFF522REY.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF030BPR bed narrowPeak optimal idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF144QCV, ENCFF615UXP, ENCFF887CGM 1588398 ENCODE Processing Pipeline 5f43fb71d39e6aca7ccb6aef19451ff0 https://www.encodeproject.org/files/ENCFF030BPR/@@download/ENCFF030BPR.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF675KGC bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 2 ENCFF319QUU, ENCFF483ELD, ENCFF769UET 7163603 ENCODE Processing Pipeline 7fd0f6c7f012d39cd0c3f994cd4f4beb https://www.encodeproject.org/files/ENCFF675KGC/@@download/ENCFF675KGC.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF281DYK bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 1, 2 ENCFF319QUU, ENCFF483ELD, ENCFF514UAV, ENCFF769UET 7175316 ENCODE Processing Pipeline 396d5c9140fe80eb4c5ab556ffd7fe5e https://www.encodeproject.org/files/ENCFF281DYK/@@download/ENCFF281DYK.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF084MBH bed narrowPeak conservative idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 1, 2 ENCFF281DYK, ENCFF419RSJ, ENCFF643NTT, ENCFF675KGC 1557983 ENCODE Processing Pipeline 6d1392a432ff30495731cd1d56ed0139 https://www.encodeproject.org/files/ENCFF084MBH/@@download/ENCFF084MBH.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF643NTT bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 1 ENCFF483ELD, ENCFF514UAV, ENCFF769UET 7153880 ENCODE Processing Pipeline 09ea0b8d1f1862257d5f17587df573cc https://www.encodeproject.org/files/ENCFF643NTT/@@download/ENCFF643NTT.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF730MQM bed narrowPeak optimal idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB247TYO DNA False 2017-06-15 ENCODE 1, 2 ENCFF281DYK, ENCFF419RSJ, ENCFF643NTT, ENCFF675KGC 1617499 ENCODE Processing Pipeline 04b5142bf0175e83b5b6f89cfcff859d https://www.encodeproject.org/files/ENCFF730MQM/@@download/ENCFF730MQM.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF002CIU bed narrowPeak optimal idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1097021 ENCODE Consortium Analysis Working Group 0071595b80838346905bf40e3186b251 https://www.encodeproject.org/files/ENCFF002CIU/@@download/ENCFF002CIU.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF917LAZ bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 2 ENCFF397FGK 5426271 ENCODE Processing Pipeline 25a26e919376e949104a8fea0209a183 https://www.encodeproject.org/files/ENCFF917LAZ/@@download/ENCFF917LAZ.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF528DYD bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1 ENCFF551FQW 4365851 ENCODE Processing Pipeline 70b774a9691c1e5433152bb1b26d3c92 https://www.encodeproject.org/files/ENCFF528DYD/@@download/ENCFF528DYD.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF904DSP bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF397FGK, ENCFF551FQW 5604561 ENCODE Processing Pipeline b2e441a9b2f5483917f811e972c537b4 https://www.encodeproject.org/files/ENCFF904DSP/@@download/ENCFF904DSP.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF991GTC bed narrowPeak conservative idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF528DYD, ENCFF904DSP, ENCFF917LAZ 700763 ENCODE Processing Pipeline 6356e07b2db067c40ffdc3bd884d3192 https://www.encodeproject.org/files/ENCFF991GTC/@@download/ENCFF991GTC.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF821AQO bed narrowPeak optimal idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF528DYD, ENCFF904DSP, ENCFF917LAZ 896598 ENCODE Processing Pipeline 6b8cb10006e54394256ba65597a853c4 https://www.encodeproject.org/files/ENCFF821AQO/@@download/ENCFF821AQO.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF010BAD bed narrowPeak peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419SAO, ENCFF905DKC 4479586 ENCODE Processing Pipeline 3935b26910c7d2eca43ec8bf0f29a22f https://www.encodeproject.org/files/ENCFF010BAD/@@download/ENCFF010BAD.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF971ILA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF010BAD 144943 ENCODE Processing Pipeline a9792d185d759a8e6ed8f94d90bb82de https://www.encodeproject.org/files/ENCFF971ILA/@@download/ENCFF971ILA.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF204QPK bed narrowPeak peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF024ELD, ENCFF270YLG 4479573 ENCODE Processing Pipeline fe853c71ed9ff5f3be76d4a2675de7a9 https://www.encodeproject.org/files/ENCFF204QPK/@@download/ENCFF204QPK.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF687WWO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF204QPK, ENCFF419RSJ 143351 ENCODE Processing Pipeline 3e852d86fe9efcfe61da9c340606b1d7 https://www.encodeproject.org/files/ENCFF687WWO/@@download/ENCFF687WWO.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF483EHQ bed narrowPeak peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF385SNU, ENCFF720JWD 5252425 ENCODE Processing Pipeline 6cb07ba566d736d39e27317f97de5023 https://www.encodeproject.org/files/ENCFF483EHQ/@@download/ENCFF483EHQ.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF454PSG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF001TDO, ENCFF483EHQ 123602 ENCODE Processing Pipeline c2a2d850376b23ad961c3a396510ad04 https://www.encodeproject.org/files/ENCFF454PSG/@@download/ENCFF454PSG.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF737SPJ bed narrowPeak peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF167NTI, ENCFF576CMR 5256438 ENCODE Processing Pipeline 12d8b8b2e7c6a705ea5cf4e800437a10 https://www.encodeproject.org/files/ENCFF737SPJ/@@download/ENCFF737SPJ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF157OEN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-06-23 ENCODE 1 ENCFF419RSJ, ENCFF737SPJ 121698 ENCODE Processing Pipeline 27fffd9e0db4985d4c62405ba7f0bfb7 https://www.encodeproject.org/files/ENCFF157OEN/@@download/ENCFF157OEN.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF570HDD bed narrowPeak peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF416WIS, ENCFF677KNU 4764214 ENCODE Processing Pipeline 833e0601f27f911d853b81d7ca683881 https://www.encodeproject.org/files/ENCFF570HDD/@@download/ENCFF570HDD.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF912XIE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF570HDD 2651 ENCODE Processing Pipeline 6d4861616fd2a67aae6b14c9971925f1 https://www.encodeproject.org/files/ENCFF912XIE/@@download/ENCFF912XIE.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF263EYR bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF323QMI, ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 7255396 ENCODE Processing Pipeline 53649563ab77d9608e6323efb0e256ed https://www.encodeproject.org/files/ENCFF263EYR/@@download/ENCFF263EYR.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF930VYW bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1 ENCFF323QMI, ENCFF540UGI, ENCFF854RGJ 7094127 ENCODE Processing Pipeline 08c0ae92d291e5e5105db1a42cd2f62d https://www.encodeproject.org/files/ENCFF930VYW/@@download/ENCFF930VYW.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF977TIL bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 2 ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 7286155 ENCODE Processing Pipeline 25404fa0dc11a561d7e6993810a6909b https://www.encodeproject.org/files/ENCFF977TIL/@@download/ENCFF977TIL.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF685MPH bed narrowPeak conservative idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF263EYR, ENCFF930VYW, ENCFF977TIL 811496 ENCODE Processing Pipeline e47c24c2ca9ec14792795b9b1e6d4d5c https://www.encodeproject.org/files/ENCFF685MPH/@@download/ENCFF685MPH.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF155SPQ bed narrowPeak optimal idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF263EYR, ENCFF930VYW, ENCFF977TIL 966701 ENCODE Processing Pipeline 9e3c6202b70ffd4857cfa6a4429b30c2 https://www.encodeproject.org/files/ENCFF155SPQ/@@download/ENCFF155SPQ.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF545OMS bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 2 ENCFF117GZZ, ENCFF727ZMM, ENCFF866GOS 7190282 ENCODE Processing Pipeline 89c904b2bdd5c0f9c1d1b3d44b46a32a https://www.encodeproject.org/files/ENCFF545OMS/@@download/ENCFF545OMS.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF850DQJ bed narrowPeak optimal idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF040LIW, ENCFF086LAD, ENCFF419RSJ, ENCFF545OMS 948187 ENCODE Processing Pipeline c06c5b74a477c14cf7227889e493e363 https://www.encodeproject.org/files/ENCFF850DQJ/@@download/ENCFF850DQJ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched status, mismatched file status ENCFF086LAD bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF117GZZ, ENCFF500VJD, ENCFF727ZMM, ENCFF866GOS 7193365 ENCODE Processing Pipeline 3ec054ab5c6e2f75c92d18525e903018 https://www.encodeproject.org/files/ENCFF086LAD/@@download/ENCFF086LAD.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched file status ENCFF043GDK bed narrowPeak conservative idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-29 ENCODE 1, 2 ENCFF040LIW, ENCFF086LAD, ENCFF419RSJ, ENCFF545OMS 796207 ENCODE Processing Pipeline 14edac11d8cd05094a1f9374f69982f6 https://www.encodeproject.org/files/ENCFF043GDK/@@download/ENCFF043GDK.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, mismatched status, mismatched file status ENCFF001XNO bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HCE 699141 John Stamatoyannopoulos, UW a0575ca4bd7aac05956a8d075a85f88f https://www.encodeproject.org/files/ENCFF001XNO/@@download/ENCFF001XNO.bed.gz hg19 archived inconsistent platforms, low read depth, low read length insufficient read depth ENCFF001XNP bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HCD 710634 John Stamatoyannopoulos, UW d4750ee3f7d12f52db88190563f13230 https://www.encodeproject.org/files/ENCFF001XNP/@@download/ENCFF001XNP.bed.gz hg19 archived inconsistent platforms, low read depth, low read length insufficient read depth ENCFF001XNQ bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HCL 554691 John Stamatoyannopoulos, UW 1f15751628dbcfc75b685eb0466bbaf4 https://www.encodeproject.org/files/ENCFF001XNQ/@@download/ENCFF001XNQ.bed.gz hg19 archived inconsistent platforms, low read depth, low read length insufficient read depth ENCFF002DCH bed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2, 3 ENCFF001HCD, ENCFF001HCE, ENCFF001HCL 921051 ENCODE Consortium Analysis Working Group 0c6742bbbd8830e32e485a7b43f857a5 https://www.encodeproject.org/files/ENCFF002DCH/@@download/ENCFF002DCH.bed.gz hg19 archived inconsistent platforms, low read depth, low read length insufficient read depth ENCFF042QJV bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 3 ENCFF655BNX 3927469 ENCODE Processing Pipeline 7ac3fbc57236f4c68a3da39a73f177d2 https://www.encodeproject.org/files/ENCFF042QJV/@@download/ENCFF042QJV.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF614IEF bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF383IOB, ENCFF655BNX 1580693 ENCODE Processing Pipeline dc94468f8aff3036d7afe2306efab541 https://www.encodeproject.org/files/ENCFF614IEF/@@download/ENCFF614IEF.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF987PPW bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF383IOB 2196160 ENCODE Processing Pipeline 951ac5964638a33135c15d81d2636d87 https://www.encodeproject.org/files/ENCFF987PPW/@@download/ENCFF987PPW.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF735IEO bed narrowPeak conservative idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF042QJV, ENCFF419RSJ, ENCFF614IEF, ENCFF987PPW 612461 ENCODE Processing Pipeline 70cd4fd783b7ae419ce88c16f6fbaf5b https://www.encodeproject.org/files/ENCFF735IEO/@@download/ENCFF735IEO.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF965YZI bed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF042QJV, ENCFF419RSJ, ENCFF614IEF, ENCFF987PPW 630836 ENCODE Processing Pipeline 941a8a409acd3664e72b358da282ea06 https://www.encodeproject.org/files/ENCFF965YZI/@@download/ENCFF965YZI.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF132AJR bed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF001TDO, ENCFF109JHW, ENCFF583NIC, ENCFF867NAA 606092 ENCODE Processing Pipeline c933cf05e523d56a4937c4b313fc01ea https://www.encodeproject.org/files/ENCFF132AJR/@@download/ENCFF132AJR.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF105YLQ bed narrowPeak conservative idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF001TDO, ENCFF109JHW, ENCFF583NIC, ENCFF867NAA 588282 ENCODE Processing Pipeline f3d8e2929486e33c7751a8b8262b333f https://www.encodeproject.org/files/ENCFF105YLQ/@@download/ENCFF105YLQ.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF109JHW bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF593BXM, ENCFF683FXB 2147125 ENCODE Processing Pipeline a1d48b4c1e08a2527a94ea40dabc8d88 https://www.encodeproject.org/files/ENCFF109JHW/@@download/ENCFF109JHW.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF583NIC bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF515ILZ, ENCFF593BXM, ENCFF683FXB 1517971 ENCODE Processing Pipeline 98c06d9c14b192df200ce7fd4ed290f1 https://www.encodeproject.org/files/ENCFF583NIC/@@download/ENCFF583NIC.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF867NAA bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 3 ENCFF515ILZ, ENCFF593BXM 3912675 ENCODE Processing Pipeline a1e14c08c716b6c9b0a151fc8359ffbf https://www.encodeproject.org/files/ENCFF867NAA/@@download/ENCFF867NAA.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF536CTG bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF006HDB, ENCFF091BWQ, ENCFF357UZL 6924968 ENCODE Processing Pipeline c316c423c4fe09a672d22c1bbe4350ed https://www.encodeproject.org/files/ENCFF536CTG/@@download/ENCFF536CTG.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF514JGP bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF006HDB, ENCFF091BWQ, ENCFF136WLN, ENCFF357UZL 7109650 ENCODE Processing Pipeline 2cc6a1b77627724a718a9018be8032a5 https://www.encodeproject.org/files/ENCFF514JGP/@@download/ENCFF514JGP.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF304IDM bed narrowPeak optimal idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF247RAX, ENCFF514JGP, ENCFF536CTG 1543624 ENCODE Processing Pipeline 56d93fec54a90ac5c5269b5284cc2f20 https://www.encodeproject.org/files/ENCFF304IDM/@@download/ENCFF304IDM.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF475IZO bed narrowPeak conservative idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF247RAX, ENCFF514JGP, ENCFF536CTG 1513147 ENCODE Processing Pipeline 0499890f7ca37fc0bf89faed2642b8bb https://www.encodeproject.org/files/ENCFF475IZO/@@download/ENCFF475IZO.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF247RAX bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF006HDB, ENCFF136WLN, ENCFF357UZL 7019787 ENCODE Processing Pipeline c551f013dad997bd272a6f5374d96e56 https://www.encodeproject.org/files/ENCFF247RAX/@@download/ENCFF247RAX.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF196KFJ bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0004905 induced pluripotent stem cell induced pluripotent stem cell line adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-06-30 ENCODE 1 ENCFF703HZB, ENCFF982GQU 4603363 ENCODE Processing Pipeline 9fc653908a3341d9a408e8124be15f67 https://www.encodeproject.org/files/ENCFF196KFJ/@@download/ENCFF196KFJ.bed.gz GRCh38 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking NTR biosample ENCFF786AIF bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0004905 induced pluripotent stem cell induced pluripotent stem cell line adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-06-30 ENCODE 1, 2 ENCFF102OPY, ENCFF341IVK, ENCFF703HZB, ENCFF982GQU 5903062 ENCODE Processing Pipeline cbbe204694b207f0d3e3ff1b52111d8d https://www.encodeproject.org/files/ENCFF786AIF/@@download/ENCFF786AIF.bed.gz GRCh38 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking NTR biosample ENCFF322WKG bed narrowPeak optimal idr thresholded peaks ENCSR932ZMX ChIP-seq EFO:0004905 induced pluripotent stem cell induced pluripotent stem cell line adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-06-30 ENCODE 1, 2 ENCFF005HJQ, ENCFF196KFJ, ENCFF419RSJ, ENCFF786AIF 1430302 ENCODE Processing Pipeline cfb4793b08a86db7181ca5d70b260615 https://www.encodeproject.org/files/ENCFF322WKG/@@download/ENCFF322WKG.bed.gz GRCh38 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking NTR biosample ENCFF005HJQ bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0004905 induced pluripotent stem cell induced pluripotent stem cell line adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-06-30 ENCODE 2 ENCFF102OPY, ENCFF341IVK 4983249 ENCODE Processing Pipeline 22395be03008a7a2a686724b5691b2c2 https://www.encodeproject.org/files/ENCFF005HJQ/@@download/ENCFF005HJQ.bed.gz GRCh38 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking NTR biosample ENCFF346PQE bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0004905 induced pluripotent stem cell induced pluripotent stem cell line adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF380SLU 4618205 ENCODE Processing Pipeline ad133f9bd7f1ba8b63b9aff213a67e14 https://www.encodeproject.org/files/ENCFF346PQE/@@download/ENCFF346PQE.bed.gz hg19 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking NTR biosample ENCFF414BJO bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0004905 induced pluripotent stem cell induced pluripotent stem cell line adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-06-30 ENCODE 2 ENCFF242CDB, ENCFF956QBZ 4977831 ENCODE Processing Pipeline 7c7077dee92bb8fba520d21de724eb86 https://www.encodeproject.org/files/ENCFF414BJO/@@download/ENCFF414BJO.bed.gz hg19 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking NTR biosample ENCFF661MCK bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0004905 induced pluripotent stem cell induced pluripotent stem cell line adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-06-30 ENCODE 1, 2 ENCFF017YFK, ENCFF242CDB, ENCFF380SLU, ENCFF956QBZ 5902870 ENCODE Processing Pipeline ba3c6f9b7274c15aeacb943cc08e1433 https://www.encodeproject.org/files/ENCFF661MCK/@@download/ENCFF661MCK.bed.gz hg19 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking NTR biosample ENCFF760HUV bed narrowPeak optimal idr thresholded peaks ENCSR932ZMX ChIP-seq EFO:0004905 induced pluripotent stem cell induced pluripotent stem cell line adult male 53 year Homo sapiens CTCF-human ENCAB247TYO DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF346PQE, ENCFF414BJO, ENCFF661MCK 1427699 ENCODE Processing Pipeline 4afa784408ac7c6d1be29f75f613ebeb https://www.encodeproject.org/files/ENCFF760HUV/@@download/ENCFF760HUV.bed.gz hg19 released antibody characterized with exemption, low read depth, mild to moderate bottlenecking NTR biosample ENCFF001UTI bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1268710 Vishwanath Iyer, UTA 92cc26545cddc9889006c0bbab6c3a83 https://www.encodeproject.org/files/ENCFF001UTI/@@download/ENCFF001UTI.bed.gz hg19 archived mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF731YTE bed narrowPeak conservative idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF195CRO, ENCFF337SGV, ENCFF867DDR 754607 ENCODE Processing Pipeline 98c8fcd78257afb230c93ca4657f498e https://www.encodeproject.org/files/ENCFF731YTE/@@download/ENCFF731YTE.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF337SGV bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF140XGV, ENCFF776OUN, ENCFF999JKD 3896011 ENCODE Processing Pipeline e34a06311bef67ebdf1dc4476bc7579f https://www.encodeproject.org/files/ENCFF337SGV/@@download/ENCFF337SGV.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF867DDR bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF140XGV, ENCFF776OUN 3572577 ENCODE Processing Pipeline 330781b220a5c21ec41b1910fb1ef55f https://www.encodeproject.org/files/ENCFF867DDR/@@download/ENCFF867DDR.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF195CRO bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF140XGV, ENCFF999JKD 3290869 ENCODE Processing Pipeline bc79aa627629fe2c0e0dba7cc8faa03f https://www.encodeproject.org/files/ENCFF195CRO/@@download/ENCFF195CRO.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF988IOQ bed narrowPeak optimal idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF195CRO, ENCFF337SGV, ENCFF867DDR 835569 ENCODE Processing Pipeline 229b8bc3f4c57961455ee29ab67d5f55 https://www.encodeproject.org/files/ENCFF988IOQ/@@download/ENCFF988IOQ.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF345PIA bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF534YMV, ENCFF925XUX 3577088 ENCODE Processing Pipeline 7f8e60a5702b673e3701567b88a95b8f https://www.encodeproject.org/files/ENCFF345PIA/@@download/ENCFF345PIA.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF670NSE bed narrowPeak optimal idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248OEO, ENCFF345PIA, ENCFF419RSJ, ENCFF554TIY 839295 ENCODE Processing Pipeline fd34b2de83e7c0651052d035a4b56d08 https://www.encodeproject.org/files/ENCFF670NSE/@@download/ENCFF670NSE.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF554TIY bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF265TUU, ENCFF534YMV 3289037 ENCODE Processing Pipeline ef9f0fd7bfd9683a0c3c93373fe2d8dd https://www.encodeproject.org/files/ENCFF554TIY/@@download/ENCFF554TIY.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF248OEO bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF265TUU, ENCFF534YMV, ENCFF925XUX 3898373 ENCODE Processing Pipeline b0574cb3302e58c550ffebcb03dea1bc https://www.encodeproject.org/files/ENCFF248OEO/@@download/ENCFF248OEO.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF155PUW bed narrowPeak conservative idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC immortalized cell line adult male 50 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248OEO, ENCFF345PIA, ENCFF419RSJ, ENCFF554TIY 756300 ENCODE Processing Pipeline 1d7be10e00f8b0978ab07b9b6096d127 https://www.encodeproject.org/files/ENCFF155PUW/@@download/ENCFF155PUW.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF002CNO bed narrowPeak optimal idr thresholded peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AXU DNA see document see document False 2011-07-18 ENCODE 780608 ENCODE Consortium Analysis Working Group cf7d9a863c4693af019267a204431d14 https://www.encodeproject.org/files/ENCFF002CNO/@@download/ENCFF002CNO.bed.gz hg19 archived moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF717PSS bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AXU DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189GFZ 3429798 ENCODE Processing Pipeline 506c2818742779c12557a82fec797633 https://www.encodeproject.org/files/ENCFF717PSS/@@download/ENCFF717PSS.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF640BUJ bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AXU DNA see document see document False 2011-07-18 ENCODE 2 ENCFF132NVE 2053513 ENCODE Processing Pipeline a71f669955b2ab923fa4115d5bb02ccc https://www.encodeproject.org/files/ENCFF640BUJ/@@download/ENCFF640BUJ.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF854RBH bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AXU DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132NVE, ENCFF189GFZ 4089402 ENCODE Processing Pipeline b90ebf51052e346bcbd0e70efd073826 https://www.encodeproject.org/files/ENCFF854RBH/@@download/ENCFF854RBH.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF049UCF bed narrowPeak optimal idr thresholded peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH immortalized cell line child female 4 year Homo sapiens all-trans-retinoic acid CTCF-human ENCAB000AXU DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF640BUJ, ENCFF717PSS, ENCFF854RBH 662927 ENCODE Processing Pipeline dae984ed1ebfb1518c2a6a2eeab81fbf https://www.encodeproject.org/files/ENCFF049UCF/@@download/ENCFF049UCF.bed.gz GRCh38 released moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF344AQO bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 1, 2 ENCFF502IBE, ENCFF574AVO, ENCFF601MGR, ENCFF618SCO 7012731 ENCODE Processing Pipeline bf0732d2339558488eee16e8953e76a6 https://www.encodeproject.org/files/ENCFF344AQO/@@download/ENCFF344AQO.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF887AQJ bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 1 ENCFF711IHQ, ENCFF951XSM 6654469 ENCODE Processing Pipeline 08857404cf857b7fe7a37be883b24d24 https://www.encodeproject.org/files/ENCFF887AQJ/@@download/ENCFF887AQJ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF276RMO bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 2 ENCFF502IBE, ENCFF618SCO 6744690 ENCODE Processing Pipeline f0b3cb8c1493d48a88cf0b30b72a08ff https://www.encodeproject.org/files/ENCFF276RMO/@@download/ENCFF276RMO.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF698WAX bed narrowPeak optimal idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF276RMO, ENCFF344AQO, ENCFF759LYG 1874386 ENCODE Processing Pipeline 91702d6a98f8d9cd05674e5be55bb360 https://www.encodeproject.org/files/ENCFF698WAX/@@download/ENCFF698WAX.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF011NRT bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 1, 2 ENCFF213AZI, ENCFF608KCO, ENCFF711IHQ, ENCFF951XSM 7041885 ENCODE Processing Pipeline c5b2092078bce6d5f046fb846ef20154 https://www.encodeproject.org/files/ENCFF011NRT/@@download/ENCFF011NRT.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF759LYG bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 1 ENCFF574AVO, ENCFF601MGR 6658556 ENCODE Processing Pipeline 6bf4ae8050845b3e67f3a7059e159a6d https://www.encodeproject.org/files/ENCFF759LYG/@@download/ENCFF759LYG.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF234SFH bed narrowPeak conservative idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF276RMO, ENCFF344AQO, ENCFF759LYG 1704873 ENCODE Processing Pipeline a5e299f562347ee3a73469e523a3e13e https://www.encodeproject.org/files/ENCFF234SFH/@@download/ENCFF234SFH.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF305CKS bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 2 ENCFF213AZI, ENCFF608KCO 6834185 ENCODE Processing Pipeline 96429b0c3a5a882c96448ad14d8da20f https://www.encodeproject.org/files/ENCFF305CKS/@@download/ENCFF305CKS.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF734LKN bed narrowPeak conservative idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 1, 2 ENCFF011NRT, ENCFF305CKS, ENCFF419RSJ, ENCFF887AQJ 1716048 ENCODE Processing Pipeline a30feeef62d4f60246a8e9764ad8e47c https://www.encodeproject.org/files/ENCFF734LKN/@@download/ENCFF734LKN.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF712LFQ bed narrowPeak optimal idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell unknown male unknown Homo sapiens CTCF-human ENCAB498PCM DNA False 2017-06-23 ENCODE 1, 2 ENCFF011NRT, ENCFF305CKS, ENCFF419RSJ, ENCFF887AQJ 1879680 ENCODE Processing Pipeline 687dcb39c1b32f30548bd57a2db9752e https://www.encodeproject.org/files/ENCFF712LFQ/@@download/ENCFF712LFQ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001VED bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 1493975 Michael Snyder, Stanford 516f23be901386790d57744858feb099 https://www.encodeproject.org/files/ENCFF001VED/@@download/ENCFF001VED.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002COQ bed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 1184123 ENCODE Consortium Analysis Working Group bc28241ebe7f2e85f79563568ea724dc https://www.encodeproject.org/files/ENCFF002COQ/@@download/ENCFF002COQ.bed.gz hg19 archived low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF960ZGP bed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF100GSO, ENCFF117WKK, ENCFF419RSJ, ENCFF529YRA 705627 ENCODE Processing Pipeline 0f3674df76186be18d25ecc0ffcf3725 https://www.encodeproject.org/files/ENCFF960ZGP/@@download/ENCFF960ZGP.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF529YRA bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 2 ENCFF033WII 2813118 ENCODE Processing Pipeline 90bc2c3005fc5db4ffdb6bbb8eb7ce38 https://www.encodeproject.org/files/ENCFF529YRA/@@download/ENCFF529YRA.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF256QBB bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 1 ENCFF119SGJ, ENCFF420MOQ 3988271 ENCODE Processing Pipeline cf3777546d0abfe725a842aadb87a1ef https://www.encodeproject.org/files/ENCFF256QBB/@@download/ENCFF256QBB.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF307KRD bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 2707163 ENCODE Processing Pipeline 2f5800e66ceebed018a31ec8f28b889e https://www.encodeproject.org/files/ENCFF307KRD/@@download/ENCFF307KRD.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF833GQU bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF119SGJ, ENCFF420MOQ, ENCFF584BRF 1978198 ENCODE Processing Pipeline 460493742288307995585489be7ba6bb https://www.encodeproject.org/files/ENCFF833GQU/@@download/ENCFF833GQU.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF710VEH bed narrowPeak conservative idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF256QBB, ENCFF307KRD, ENCFF833GQU 702399 ENCODE Processing Pipeline cc13297e7415d8e276f3516031835828 https://www.encodeproject.org/files/ENCFF710VEH/@@download/ENCFF710VEH.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF117WKK bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 1 ENCFF162QXM 4004974 ENCODE Processing Pipeline 9abd47eca17cd759ae473d8a34781f7c https://www.encodeproject.org/files/ENCFF117WKK/@@download/ENCFF117WKK.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF100GSO bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF033WII, ENCFF162QXM 2012249 ENCODE Processing Pipeline 0aed950a86309798779db28d7393fdd4 https://www.encodeproject.org/files/ENCFF100GSO/@@download/ENCFF100GSO.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient read depth ENCFF001XPO bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIL 531792 John Stamatoyannopoulos, UW ce871a4739488497f410aa5a2f67ea93 https://www.encodeproject.org/files/ENCFF001XPO/@@download/ENCFF001XPO.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XPQ bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIM 869927 John Stamatoyannopoulos, UW 7996532948c808b2eb4f82e13c63593a https://www.encodeproject.org/files/ENCFF001XPQ/@@download/ENCFF001XPQ.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCN bed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HIL, ENCFF001HIM 1041973 ENCODE Consortium Analysis Working Group 6f6e5bd28de13ea3f263d372708f7a6d https://www.encodeproject.org/files/ENCFF002DCN/@@download/ENCFF002DCN.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF158XRH bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF473LHB 4673234 ENCODE Processing Pipeline 77584fe6cde81df318e0fff5ddec22b6 https://www.encodeproject.org/files/ENCFF158XRH/@@download/ENCFF158XRH.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF366SWC bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF955QCB 4389478 ENCODE Processing Pipeline b16a914721edbaea49f241825f7b2a3c https://www.encodeproject.org/files/ENCFF366SWC/@@download/ENCFF366SWC.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF255LCA bed narrowPeak conservative idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF158XRH, ENCFF276VRZ, ENCFF366SWC, ENCFF419RSJ 667455 ENCODE Processing Pipeline 909062649b3fa65c8b5ba463a0dccc4b https://www.encodeproject.org/files/ENCFF255LCA/@@download/ENCFF255LCA.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF515KNI bed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF158XRH, ENCFF276VRZ, ENCFF366SWC, ENCFF419RSJ 775259 ENCODE Processing Pipeline eb915a872c958f40f6cc94ff7cd0ea4b https://www.encodeproject.org/files/ENCFF515KNI/@@download/ENCFF515KNI.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF276VRZ bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF473LHB, ENCFF955QCB 5192808 ENCODE Processing Pipeline c286bd970f0629e3c5b72d54a35c8b4e https://www.encodeproject.org/files/ENCFF276VRZ/@@download/ENCFF276VRZ.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF542XFE bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1 ENCFF188FPI, ENCFF935VDG 4274351 ENCODE Processing Pipeline 4e17e26fd1b6a5c426615f1e6b8b4972 https://www.encodeproject.org/files/ENCFF542XFE/@@download/ENCFF542XFE.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF897VMF bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF022ACL, ENCFF188FPI, ENCFF935VDG 5216099 ENCODE Processing Pipeline 97851239f6dc2a104bfc3ac2133c2070 https://www.encodeproject.org/files/ENCFF897VMF/@@download/ENCFF897VMF.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF660HHS bed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF542XFE, ENCFF724RQI, ENCFF897VMF 765621 ENCODE Processing Pipeline 4c00b542348b145ccdfb55fee6c12ab9 https://www.encodeproject.org/files/ENCFF660HHS/@@download/ENCFF660HHS.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF724RQI bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 2 ENCFF022ACL, ENCFF188FPI 4731292 ENCODE Processing Pipeline 5c31453f4907d1601b859506d877fc64 https://www.encodeproject.org/files/ENCFF724RQI/@@download/ENCFF724RQI.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF861LTN bed narrowPeak conservative idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF542XFE, ENCFF724RQI, ENCFF897VMF 673471 ENCODE Processing Pipeline 54d5b186e2b2aa664e397da1c791b00f https://www.encodeproject.org/files/ENCFF861LTN/@@download/ENCFF861LTN.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XLZ bed narrowPeak peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWZ 745367 John Stamatoyannopoulos, UW 581431e9ce2e232b2f1d85641d31ed78 https://www.encodeproject.org/files/ENCFF001XLZ/@@download/ENCFF001XLZ.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XMA bed narrowPeak peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXC 547223 John Stamatoyannopoulos, UW 73909ab110e808d51fc2e7c5ac0716f5 https://www.encodeproject.org/files/ENCFF001XMA/@@download/ENCFF001XMA.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DBX bed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GWZ, ENCFF001GXC 909696 ENCODE Consortium Analysis Working Group e4c9ca3fd0bbe016c349e411ec6c52e3 https://www.encodeproject.org/files/ENCFF002DBX/@@download/ENCFF002DBX.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF267MON bed narrowPeak peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF135FSJ 3899867 ENCODE Processing Pipeline 3591ffa967736eb6726148c83edf3f90 https://www.encodeproject.org/files/ENCFF267MON/@@download/ENCFF267MON.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF623IIJ bed narrowPeak peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF088ESD, ENCFF135FSJ 4037916 ENCODE Processing Pipeline 89f789e01c6e347c5e8c2636ea649f6d https://www.encodeproject.org/files/ENCFF623IIJ/@@download/ENCFF623IIJ.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF117SCL bed narrowPeak peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF088ESD 2496352 ENCODE Processing Pipeline 1e536ef4b2f279aee9991dc2c3cc3673 https://www.encodeproject.org/files/ENCFF117SCL/@@download/ENCFF117SCL.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF419OQC bed narrowPeak conservative idr thresholded peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF117SCL, ENCFF267MON, ENCFF419RSJ, ENCFF623IIJ 643736 ENCODE Processing Pipeline a7a9469194f334dcc196ed7df8d7af11 https://www.encodeproject.org/files/ENCFF419OQC/@@download/ENCFF419OQC.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF826NCK bed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF117SCL, ENCFF267MON, ENCFF419RSJ, ENCFF623IIJ 703156 ENCODE Processing Pipeline cef9f8b0e050e518e0b30363df080d46 https://www.encodeproject.org/files/ENCFF826NCK/@@download/ENCFF826NCK.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF042OUP bed narrowPeak peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF004OMB, ENCFF137BYR, ENCFF217RCW 4061584 ENCODE Processing Pipeline dddc9336ee970a464c0795654ce246bd https://www.encodeproject.org/files/ENCFF042OUP/@@download/ENCFF042OUP.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF437UAR bed narrowPeak peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF137BYR, ENCFF217RCW 2527386 ENCODE Processing Pipeline fedd7582605f939e4bdfb8920ec183b7 https://www.encodeproject.org/files/ENCFF437UAR/@@download/ENCFF437UAR.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF299COL bed narrowPeak peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF004OMB, ENCFF137BYR 3925324 ENCODE Processing Pipeline be75fd99a795d1e80cff9e274c320e41 https://www.encodeproject.org/files/ENCFF299COL/@@download/ENCFF299COL.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF405DVU bed narrowPeak conservative idr thresholded peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF042OUP, ENCFF299COL, ENCFF437UAR 649637 ENCODE Processing Pipeline 211f9f25eba6d61dd6b98626b4e7faf7 https://www.encodeproject.org/files/ENCFF405DVU/@@download/ENCFF405DVU.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF622DUX bed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq CL:2000012 fibroblast of pedal digit skin primary cell adult female 21 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF042OUP, ENCFF299COL, ENCFF437UAR 711204 ENCODE Processing Pipeline 0d3d0dc20ceb418bf2381474049dad66 https://www.encodeproject.org/files/ENCFF622DUX/@@download/ENCFF622DUX.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XRZ bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQS 784240 John Stamatoyannopoulos, UW c6e82dd42fd9c9dbdd3d75df1183fbf3 https://www.encodeproject.org/files/ENCFF001XRZ/@@download/ENCFF001XRZ.bed.gz hg19 archived inconsistent platforms, low read depth, low read length ENCFF001XSA bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQU 720827 John Stamatoyannopoulos, UW 4f3ab5ae1b6b2c1fecb823ebb5292428 https://www.encodeproject.org/files/ENCFF001XSA/@@download/ENCFF001XSA.bed.gz hg19 archived inconsistent platforms, low read depth, low read length ENCFF002DDE bed narrowPeak optimal idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HQS, ENCFF001HQU 1047705 ENCODE Consortium Analysis Working Group 14aa397f7b3c83831889aed668d4fa68 https://www.encodeproject.org/files/ENCFF002DDE/@@download/ENCFF002DDE.bed.gz hg19 archived inconsistent platforms, low read depth, low read length ENCFF484FSJ bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327QNZ, ENCFF741CYK 4255434 ENCODE Processing Pipeline ee87c3fbff61e02a52a4f6a9cf8093bd https://www.encodeproject.org/files/ENCFF484FSJ/@@download/ENCFF484FSJ.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF523ROB bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF696UMD, ENCFF741CYK 4336533 ENCODE Processing Pipeline 5827fa02b923d7f307a1f043d32c4ec1 https://www.encodeproject.org/files/ENCFF523ROB/@@download/ENCFF523ROB.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF909NRN bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF327QNZ, ENCFF696UMD, ENCFF741CYK 4796649 ENCODE Processing Pipeline f51ec11eb15677585fe50a959f691f20 https://www.encodeproject.org/files/ENCFF909NRN/@@download/ENCFF909NRN.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF777ODE bed narrowPeak optimal idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF484FSJ, ENCFF523ROB, ENCFF909NRN 764061 ENCODE Processing Pipeline 325603dfc60c0749af80c8a6366daad9 https://www.encodeproject.org/files/ENCFF777ODE/@@download/ENCFF777ODE.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length ENCFF213JJM bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF138KCG, ENCFF501JGN 4259970 ENCODE Processing Pipeline b164abad0ce02171120a2a3e0b3e4963 https://www.encodeproject.org/files/ENCFF213JJM/@@download/ENCFF213JJM.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF129FBO bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF138KCG, ENCFF162OTW 4341715 ENCODE Processing Pipeline e0e094e56cd99e7dd5ecfd67f77b2ffd https://www.encodeproject.org/files/ENCFF129FBO/@@download/ENCFF129FBO.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF519REF bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF138KCG, ENCFF162OTW, ENCFF501JGN 4798962 ENCODE Processing Pipeline 8be57cdccfe3469cfda34126dd9ebb02 https://www.encodeproject.org/files/ENCFF519REF/@@download/ENCFF519REF.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF570FLB bed narrowPeak conservative idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF129FBO, ENCFF213JJM, ENCFF519REF 763178 ENCODE Processing Pipeline 86c192815799a1a048cd599e0a046fe5 https://www.encodeproject.org/files/ENCFF570FLB/@@download/ENCFF570FLB.bed.gz hg19 released inconsistent platforms, low read depth, low read length ENCFF002CDS bed narrowPeak optimal idr thresholded peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell embryonic male unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000AVI, ENCFF000AVK 1381027 ENCODE Consortium Analysis Working Group 5042afb91f822356fa7b9d16c6d94e94 https://www.encodeproject.org/files/ENCFF002CDS/@@download/ENCFF002CDS.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length mismatched file status ENCFF001UTZ bed narrowPeak peaks ENCSR000DNG ChIP-seq EFO:0005909 HGPS cell immortalized cell line child male 8 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 1 1187643 Vishwanath Iyer, UTA b206dcb204aba0d956dffd12095ddc12 https://www.encodeproject.org/files/ENCFF001UTZ/@@download/ENCFF001UTZ.bed.gz hg19 released biological replicates with identical biosample, mismatched status, missing raw data in replicate, missing derived_from ENCFF002DBS bed narrowPeak optimal idr thresholded peaks ENCSR000DNG ChIP-seq EFO:0005909 HGPS cell immortalized cell line child male 8 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 976913 ENCODE Consortium Analysis Working Group 99c4c10a30241f9b047cbae8b632c60c https://www.encodeproject.org/files/ENCFF002DBS/@@download/ENCFF002DBS.bed.gz hg19 released biological replicates with identical biosample, mismatched status, missing raw data in replicate, missing derived_from ENCFF001XRV bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQA 937295 John Stamatoyannopoulos, UW 338697a148ccc83d0ae17ec08a2c3451 https://www.encodeproject.org/files/ENCFF001XRV/@@download/ENCFF001XRV.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF001XRW bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQF 866798 John Stamatoyannopoulos, UW 09854fb94d70441e5f5e75934253be16 https://www.encodeproject.org/files/ENCFF001XRW/@@download/ENCFF001XRW.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF002DDD bed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 36 ENCFF001HQA, ENCFF001HQF 1280589 ENCODE Consortium Analysis Working Group 6eef776fc803129c517249a6d8cc4b18 https://www.encodeproject.org/files/ENCFF002DDD/@@download/ENCFF002DDD.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF290IBC bed narrowPeak conservative idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF470ARY, ENCFF541OOY, ENCFF610GLP 667345 ENCODE Processing Pipeline 2fdb7564100def125b831104d9e40381 https://www.encodeproject.org/files/ENCFF290IBC/@@download/ENCFF290IBC.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF933VBD bed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF470ARY, ENCFF541OOY, ENCFF610GLP 739247 ENCODE Processing Pipeline a0ca7418cb4781ded156ca6489564a8e https://www.encodeproject.org/files/ENCFF933VBD/@@download/ENCFF933VBD.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF470ARY bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF066DPY, ENCFF327YGC 4543454 ENCODE Processing Pipeline 02892451904ce256dde4a1e8c00bea2b https://www.encodeproject.org/files/ENCFF470ARY/@@download/ENCFF470ARY.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF610GLP bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327YGC, ENCFF470KVA 4675468 ENCODE Processing Pipeline da53e8f4957c778f8467e4f97692440a https://www.encodeproject.org/files/ENCFF610GLP/@@download/ENCFF610GLP.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF541OOY bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF066DPY, ENCFF327YGC, ENCFF470KVA 5009654 ENCODE Processing Pipeline bf115d541785d285f3f79f070af4aa11 https://www.encodeproject.org/files/ENCFF541OOY/@@download/ENCFF541OOY.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF293WPK bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF288FQY, ENCFF647KJA 5013340 ENCODE Processing Pipeline 469a63cdca8a2eb1c9d087e1887103dd https://www.encodeproject.org/files/ENCFF293WPK/@@download/ENCFF293WPK.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF310TCJ bed narrowPeak conservative idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF293WPK, ENCFF419RSJ, ENCFF796FYL, ENCFF899LFJ 670932 ENCODE Processing Pipeline e1e8d15376451f673458e4088cb14d84 https://www.encodeproject.org/files/ENCFF310TCJ/@@download/ENCFF310TCJ.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF899LFJ bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF647KJA 4487492 ENCODE Processing Pipeline 38b6dc879649ca9cd4ffa79616455cd2 https://www.encodeproject.org/files/ENCFF899LFJ/@@download/ENCFF899LFJ.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF093QTY bed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF293WPK, ENCFF419RSJ, ENCFF796FYL, ENCFF899LFJ 756589 ENCODE Processing Pipeline 7e1a07731a23fe78f00dfe3d07795266 https://www.encodeproject.org/files/ENCFF093QTY/@@download/ENCFF093QTY.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF796FYL bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF288FQY 4673906 ENCODE Processing Pipeline ddd02afbdd845065d74ef74e2376148a https://www.encodeproject.org/files/ENCFF796FYL/@@download/ENCFF796FYL.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length ENCFF001UTO bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1400356 Vishwanath Iyer, UTA eb4322e60c37f8b88cbfc12a9abe8c4f https://www.encodeproject.org/files/ENCFF001UTO/@@download/ENCFF001UTO.bed.gz hg19 archived mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF002DBJ bed narrowPeak optimal idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1480247 ENCODE Consortium Analysis Working Group c7819cf56ead7511c33aaac594c6aa44 https://www.encodeproject.org/files/ENCFF002DBJ/@@download/ENCFF002DBJ.bed.gz hg19 archived mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF601KOW bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 2 ENCFF508RFI 5256453 ENCODE Processing Pipeline bf43c681750e30f9c966298e0f77a8fc https://www.encodeproject.org/files/ENCFF601KOW/@@download/ENCFF601KOW.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF089NPT bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF623HMX 5403398 ENCODE Processing Pipeline 3b997cb0e022e9eb81326c4590852f4d https://www.encodeproject.org/files/ENCFF089NPT/@@download/ENCFF089NPT.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF685HMV bed narrowPeak optimal idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF089NPT, ENCFF419RSJ, ENCFF601KOW, ENCFF608TPR 1074581 ENCODE Processing Pipeline 81da51044631615dda94f0189299ce39 https://www.encodeproject.org/files/ENCFF685HMV/@@download/ENCFF685HMV.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF608TPR bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF508RFI, ENCFF623HMX 6319293 ENCODE Processing Pipeline 9fc526edb0e87dc8c97911a90abd136b https://www.encodeproject.org/files/ENCFF608TPR/@@download/ENCFF608TPR.bed.gz GRCh38 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF007EZA bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 2 ENCFF248VFM, ENCFF602XLT 5283201 ENCODE Processing Pipeline 8e8f50efe22e1fc2fd9ff11a5fd84fa4 https://www.encodeproject.org/files/ENCFF007EZA/@@download/ENCFF007EZA.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF136BEY bed narrowPeak conservative idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF007EZA, ENCFF217YFS, ENCFF438DXI 1074391 ENCODE Processing Pipeline f0937e8a61eef201006009516fe71acb https://www.encodeproject.org/files/ENCFF136BEY/@@download/ENCFF136BEY.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF438DXI bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF628LRK 5404774 ENCODE Processing Pipeline 8d9826e9efce14d6f47062e66584c858 https://www.encodeproject.org/files/ENCFF438DXI/@@download/ENCFF438DXI.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF217YFS bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens 17β-estradiol CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF248VFM, ENCFF602XLT, ENCFF628LRK 6316605 ENCODE Processing Pipeline d10c567fcc91ce8dbab9487baf39eeb7 https://www.encodeproject.org/files/ENCFF217YFS/@@download/ENCFF217YFS.bed.gz hg19 released mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF001XPL bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHN 546105 John Stamatoyannopoulos, UW 05c13c8ad1f8447216514287c9a8cbf9 https://www.encodeproject.org/files/ENCFF001XPL/@@download/ENCFF001XPL.bed.gz hg19 archived inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XPM bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 768874 John Stamatoyannopoulos, UW db6a022f65cca2f4255919a9a665af29 https://www.encodeproject.org/files/ENCFF001XPM/@@download/ENCFF001XPM.bed.gz hg19 archived inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCM bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HHN, ENCFF001HHS 826017 ENCODE Consortium Analysis Working Group a8c651b28667a589dbf0c29f9e45ab01 https://www.encodeproject.org/files/ENCFF002DCM/@@download/ENCFF002DCM.bed.gz hg19 archived inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF303UAB bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF607GOG, ENCFF892TNJ 1748719 ENCODE Processing Pipeline b63e8c0ee9f5f7eb5feb22f98c885a56 https://www.encodeproject.org/files/ENCFF303UAB/@@download/ENCFF303UAB.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF559IXF bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 3921477 ENCODE Processing Pipeline d2f733fe91eb768e2544200a7b2f1c49 https://www.encodeproject.org/files/ENCFF559IXF/@@download/ENCFF559IXF.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF918HTJ bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412PHP, ENCFF607GOG, ENCFF892TNJ 4163568 ENCODE Processing Pipeline ef3b80a1842c373d47bb829d5ab41e46 https://www.encodeproject.org/files/ENCFF918HTJ/@@download/ENCFF918HTJ.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF963PJY bed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF303UAB, ENCFF559IXF, ENCFF918HTJ 573102 ENCODE Processing Pipeline 35832d7990ec7d3240e3ddd9537b4b4d https://www.encodeproject.org/files/ENCFF963PJY/@@download/ENCFF963PJY.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF473RXY bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF303UAB, ENCFF559IXF, ENCFF918HTJ 645089 ENCODE Processing Pipeline 9263eb7386faf2870ea728ae87b40a30 https://www.encodeproject.org/files/ENCFF473RXY/@@download/ENCFF473RXY.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF239OQV bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF094HMB, ENCFF612FTS, ENCFF614VZE 4165448 ENCODE Processing Pipeline 0b42ebbeff9603f5d9966a7d7466ef63 https://www.encodeproject.org/files/ENCFF239OQV/@@download/ENCFF239OQV.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF906GEW bed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239OQV, ENCFF412MBV, ENCFF419RSJ, ENCFF507TTK 573881 ENCODE Processing Pipeline 9ef783fa7596e57208106836c453f8ef https://www.encodeproject.org/files/ENCFF906GEW/@@download/ENCFF906GEW.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF412MBV bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF094HMB, ENCFF612FTS 1758149 ENCODE Processing Pipeline 0da10b68fa0cf613394bae9b50b914d6 https://www.encodeproject.org/files/ENCFF412MBV/@@download/ENCFF412MBV.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF507TTK bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF094HMB, ENCFF614VZE 3925685 ENCODE Processing Pipeline 869e8bd441e4a89337e943d4b48f1314 https://www.encodeproject.org/files/ENCFF507TTK/@@download/ENCFF507TTK.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF023RJC bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 immortalized cell line adult female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239OQV, ENCFF412MBV, ENCFF419RSJ, ENCFF507TTK 647585 ENCODE Processing Pipeline 81b751432432db540066a8343a415cda https://www.encodeproject.org/files/ENCFF023RJC/@@download/ENCFF023RJC.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF256VHD bed narrowPeak peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF089ZLE, ENCFF840LTU 6076917 ENCODE Processing Pipeline 4864a2dbaf20706a0f16e60bfebca823 https://www.encodeproject.org/files/ENCFF256VHD/@@download/ENCFF256VHD.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF147RBN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF256VHD 404105 ENCODE Processing Pipeline 25e246f967fa8ecbef00677d441d8c1e https://www.encodeproject.org/files/ENCFF147RBN/@@download/ENCFF147RBN.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF135IYN bed narrowPeak peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF023NJF, ENCFF353ZVY 6080530 ENCODE Processing Pipeline 6b399df16d8c6895fbd7d4d9fdcb9a77 https://www.encodeproject.org/files/ENCFF135IYN/@@download/ENCFF135IYN.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF374MIO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF135IYN, ENCFF419RSJ 409511 ENCODE Processing Pipeline 9665a8b4c127a52b70bf20fdff679b2a https://www.encodeproject.org/files/ENCFF374MIO/@@download/ENCFF374MIO.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF437LBW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF001TDO, ENCFF325IOO 732551 ENCODE Processing Pipeline aaea339e646ae7fdf4591bd0072188fb https://www.encodeproject.org/files/ENCFF437LBW/@@download/ENCFF437LBW.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF325IOO bed narrowPeak peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF435OCU, ENCFF508CNG 6480989 ENCODE Processing Pipeline d1c0ba9640cf006ade1f4b49893ae397 https://www.encodeproject.org/files/ENCFF325IOO/@@download/ENCFF325IOO.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF994QQT bed narrowPeak peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF395VIK, ENCFF651ZZS 6565167 ENCODE Processing Pipeline 6c0302db97642c76eb0a5b12dc6d3494 https://www.encodeproject.org/files/ENCFF994QQT/@@download/ENCFF994QQT.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF153EBU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-29 ENCODE 1 ENCFF419RSJ, ENCFF994QQT 764952 ENCODE Processing Pipeline 12a5fb124bd3a5656a1988de790e7ec8 https://www.encodeproject.org/files/ENCFF153EBU/@@download/ENCFF153EBU.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF620DNX bed narrowPeak peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF051HDO, ENCFF908GSJ 6836392 ENCODE Processing Pipeline 8da83cc93e5aa7b42fc58f8a6577596a https://www.encodeproject.org/files/ENCFF620DNX/@@download/ENCFF620DNX.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF547PLX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF620DNX 743529 ENCODE Processing Pipeline 9be895fc655a4677eb0774b455ac6453 https://www.encodeproject.org/files/ENCFF547PLX/@@download/ENCFF547PLX.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF693TBO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF554DUQ 752636 ENCODE Processing Pipeline 785853b1da7f2711bc2955eac040a1f9 https://www.encodeproject.org/files/ENCFF693TBO/@@download/ENCFF693TBO.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF554DUQ bed narrowPeak peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF548GPB, ENCFF602FBL 6865342 ENCODE Processing Pipeline 01ff45d5e90073c657638db7547b1050 https://www.encodeproject.org/files/ENCFF554DUQ/@@download/ENCFF554DUQ.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001UTE bed narrowPeak peaks ENCSR000DMA ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1504839 Vishwanath Iyer, UTA 984abaf5e5a6fa22237906bc107644ac https://www.encodeproject.org/files/ENCFF001UTE/@@download/ENCFF001UTE.bed.gz hg19 released missing unfiltered alignments, biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF002DBD bed narrowPeak optimal idr thresholded peaks ENCSR000DMA ChIP-seq EFO:0002067 K562 immortalized cell line adult female 53 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1077102 ENCODE Consortium Analysis Working Group 691e48b1344e23067ee35e35c640d364 https://www.encodeproject.org/files/ENCFF002DBD/@@download/ENCFF002DBD.bed.gz hg19 released missing unfiltered alignments, biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF214AAT bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 2 ENCFF555MNQ, ENCFF622MSR 4828973 ENCODE Processing Pipeline 7493298ac1ae24dc05127a63c9198348 https://www.encodeproject.org/files/ENCFF214AAT/@@download/ENCFF214AAT.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF154TPN bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 2 ENCFF014MZL 4827891 ENCODE Processing Pipeline c67327a40bfb164f2d32fe135df0ced3 https://www.encodeproject.org/files/ENCFF154TPN/@@download/ENCFF154TPN.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF021NMZ bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1 ENCFF296CPJ, ENCFF831FMU 2565552 ENCODE Processing Pipeline 98f67bb8cf3d192bc3750f98903272a1 https://www.encodeproject.org/files/ENCFF021NMZ/@@download/ENCFF021NMZ.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF971PWB bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF296CPJ, ENCFF555MNQ, ENCFF622MSR, ENCFF831FMU 5247353 ENCODE Processing Pipeline eda6345b12dd5704348f9d8ffc5485fb https://www.encodeproject.org/files/ENCFF971PWB/@@download/ENCFF971PWB.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF568STA bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1 ENCFF309AXU 2566184 ENCODE Processing Pipeline a513dea1e4e6c6c9d3e8b0b4f32f9a68 https://www.encodeproject.org/files/ENCFF568STA/@@download/ENCFF568STA.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF550EQQ bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF014MZL, ENCFF309AXU 5204446 ENCODE Processing Pipeline 9ed3741025efcd0c2d2156912177cf1c https://www.encodeproject.org/files/ENCFF550EQQ/@@download/ENCFF550EQQ.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF056ESE bed narrowPeak conservative idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF154TPN, ENCFF419RSJ, ENCFF550EQQ, ENCFF568STA 510872 ENCODE Processing Pipeline c8afb24f1412c9792e2a5c8a7525c54a https://www.encodeproject.org/files/ENCFF056ESE/@@download/ENCFF056ESE.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF025JZZ bed narrowPeak conservative idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF021NMZ, ENCFF214AAT, ENCFF971PWB 511023 ENCODE Processing Pipeline e8fac38b6ad6643f1a5b4c272eef0abf https://www.encodeproject.org/files/ENCFF025JZZ/@@download/ENCFF025JZZ.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF549PGC bed narrowPeak optimal idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF154TPN, ENCFF419RSJ, ENCFF550EQQ, ENCFF568STA 598467 ENCODE Processing Pipeline 713f58a6497a9168a326123919672ebe https://www.encodeproject.org/files/ENCFF549PGC/@@download/ENCFF549PGC.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF917ZPO bed narrowPeak optimal idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 immortalized cell line adult male unknown Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF021NMZ, ENCFF214AAT, ENCFF971PWB 602672 ENCODE Processing Pipeline eb204541dbdac5aa54d530917f198a18 https://www.encodeproject.org/files/ENCFF917ZPO/@@download/ENCFF917ZPO.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, borderline replicate concordance missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF088SYH bed narrowPeak peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF158YVQ, ENCFF664ITJ 6629904 ENCODE Processing Pipeline 6561cc38e9ca79c1de0d331b5f8fce18 https://www.encodeproject.org/files/ENCFF088SYH/@@download/ENCFF088SYH.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF544XZU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF088SYH 695378 ENCODE Processing Pipeline cff62d9a0bc723ace8b5022252329a64 https://www.encodeproject.org/files/ENCFF544XZU/@@download/ENCFF544XZU.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF817YDQ bed narrowPeak peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF696CNP, ENCFF703ZWI 6594639 ENCODE Processing Pipeline 134b0364f2667578bf917634ac4762a1 https://www.encodeproject.org/files/ENCFF817YDQ/@@download/ENCFF817YDQ.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF749CMN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF817YDQ 680045 ENCODE Processing Pipeline 8d0d2b5879f9457ae314fc1cc797aa90 https://www.encodeproject.org/files/ENCFF749CMN/@@download/ENCFF749CMN.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF657HTU bed narrowPeak peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF016BGY, ENCFF779DOP 5033900 ENCODE Processing Pipeline b55057f4521fac98c567c3be33165252 https://www.encodeproject.org/files/ENCFF657HTU/@@download/ENCFF657HTU.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF051USR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF657HTU 183 ENCODE Processing Pipeline d1a604ce6f424996f98e49114e79d3a7 https://www.encodeproject.org/files/ENCFF051USR/@@download/ENCFF051USR.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF043PIW bed narrowPeak peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF078USH, ENCFF354PAM 5034487 ENCODE Processing Pipeline 7ca47959700b832bd0a26f2d19d85371 https://www.encodeproject.org/files/ENCFF043PIW/@@download/ENCFF043PIW.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF719VDM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF043PIW, ENCFF419RSJ 504 ENCODE Processing Pipeline 9a3e6c87c2e24bd5e1077abacff82e17 https://www.encodeproject.org/files/ENCFF719VDM/@@download/ENCFF719VDM.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF938GUY bed narrowPeak peaks ENCSR323POR ChIP-seq UBERON:0001159 sigmoid colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-08 ENCODE 1 ENCFF215LLM, ENCFF451YVL 5203649 ENCODE Processing Pipeline 4dab8484f69ef0a5bc4730021d5c9326 https://www.encodeproject.org/files/ENCFF938GUY/@@download/ENCFF938GUY.bed.gz hg19 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF324KGZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR323POR ChIP-seq UBERON:0001159 sigmoid colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-08 ENCODE 1 ENCFF001TDO, ENCFF938GUY 216453 ENCODE Processing Pipeline 050df7ca3f8de8b3dfc73e1dd74b0593 https://www.encodeproject.org/files/ENCFF324KGZ/@@download/ENCFF324KGZ.bed.gz hg19 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF043YQT bed narrowPeak peaks ENCSR323POR ChIP-seq UBERON:0001159 sigmoid colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-08 ENCODE 1 ENCFF736XBY, ENCFF758VNF 5207868 ENCODE Processing Pipeline 3793262275afa33e2c2e7df411c36405 https://www.encodeproject.org/files/ENCFF043YQT/@@download/ENCFF043YQT.bed.gz GRCh38 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF070ILT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR323POR ChIP-seq UBERON:0001159 sigmoid colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-08 ENCODE 1 ENCFF043YQT, ENCFF419RSJ 215726 ENCODE Processing Pipeline 4b6632d1db1444fa538555be8b003ed0 https://www.encodeproject.org/files/ENCFF070ILT/@@download/ENCFF070ILT.bed.gz GRCh38 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF001USF bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1318235 Vishwanath Iyer, UTA a3a7daa60e6440de140376f4e7603835 https://www.encodeproject.org/files/ENCFF001USF/@@download/ENCFF001USF.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF269XYR bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF779BHG 3717393 ENCODE Processing Pipeline 49b72c2145e6b890d96b1584cf941a7d https://www.encodeproject.org/files/ENCFF269XYR/@@download/ENCFF269XYR.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample ENCFF503BUG bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF686DDV 3475879 ENCODE Processing Pipeline 076e087b887cbe8acaa904e1a3e6b2af https://www.encodeproject.org/files/ENCFF503BUG/@@download/ENCFF503BUG.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample ENCFF846CNP bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF686DDV, ENCFF779BHG 4007616 ENCODE Processing Pipeline 6fa67efd822e9cc7b1a7f77f3fea8d37 https://www.encodeproject.org/files/ENCFF846CNP/@@download/ENCFF846CNP.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample ENCFF178PUI bed narrowPeak optimal idr thresholded peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF269XYR, ENCFF419RSJ, ENCFF503BUG, ENCFF846CNP 541617 ENCODE Processing Pipeline 40744f47d1b94b88b85cec54ecf5ce8d https://www.encodeproject.org/files/ENCFF178PUI/@@download/ENCFF178PUI.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample ENCFF787CXT bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF297IQJ, ENCFF892JNF 3443460 ENCODE Processing Pipeline 0cf91c4f6235aa79d074109821553f4e https://www.encodeproject.org/files/ENCFF787CXT/@@download/ENCFF787CXT.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample ENCFF950YTB bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF297IQJ, ENCFF719PSV, ENCFF892JNF 3965769 ENCODE Processing Pipeline 0aeef18ce8e83db90e4820c6d92b3c54 https://www.encodeproject.org/files/ENCFF950YTB/@@download/ENCFF950YTB.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample ENCFF327KKL bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF297IQJ, ENCFF719PSV 3660347 ENCODE Processing Pipeline 37d1306101f90abfb34886cf38a6fe60 https://www.encodeproject.org/files/ENCFF327KKL/@@download/ENCFF327KKL.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample ENCFF855HSK bed narrowPeak conservative idr thresholded peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 immortalized cell line unknown male 38 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF327KKL, ENCFF787CXT, ENCFF950YTB 520860 ENCODE Processing Pipeline 88e4bb9295bf0a07c811034ba0e4ed00 https://www.encodeproject.org/files/ENCFF855HSK/@@download/ENCFF855HSK.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample ENCFF001XQP bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMA 850780 John Stamatoyannopoulos, UW 4f73df136f2a0e067db84728d6033d59 https://www.encodeproject.org/files/ENCFF001XQP/@@download/ENCFF001XQP.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XQQ bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLX 595419 John Stamatoyannopoulos, UW 917b66a2b31af8ad0d2b6b3069a93290 https://www.encodeproject.org/files/ENCFF001XQQ/@@download/ENCFF001XQQ.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCU bed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001XQP, ENCFF001XQQ 971278 ENCODE Consortium Analysis Working Group 5ae6a367e15ecc7f2c42171d320a6aa5 https://www.encodeproject.org/files/ENCFF002DCU/@@download/ENCFF002DCU.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF909KXC bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF388UNJ 4111773 ENCODE Processing Pipeline ae390b3490f9ae49e349b8b220371101 https://www.encodeproject.org/files/ENCFF909KXC/@@download/ENCFF909KXC.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF148VWR bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF552FJB 3411285 ENCODE Processing Pipeline 88321634cf96b9e33d5d5bc76c3076b1 https://www.encodeproject.org/files/ENCFF148VWR/@@download/ENCFF148VWR.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF703ZOF bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF388UNJ, ENCFF552FJB 4458037 ENCODE Processing Pipeline 7503ce9cfe44dc66edf5b71f00d55fd4 https://www.encodeproject.org/files/ENCFF703ZOF/@@download/ENCFF703ZOF.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF964VIQ bed narrowPeak conservative idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF148VWR, ENCFF419RSJ, ENCFF703ZOF, ENCFF909KXC 738909 ENCODE Processing Pipeline 53dbb236353aaff0d0b87aa2ef992976 https://www.encodeproject.org/files/ENCFF964VIQ/@@download/ENCFF964VIQ.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF796AAX bed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF148VWR, ENCFF419RSJ, ENCFF703ZOF, ENCFF909KXC 780366 ENCODE Processing Pipeline 6578646cc319fd4b0218016b1a2fa17c https://www.encodeproject.org/files/ENCFF796AAX/@@download/ENCFF796AAX.bed.gz GRCh38 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF015JHG bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF145CAZ, ENCFF999PXI 4136561 ENCODE Processing Pipeline b722740c8432187aec3b4e6da26dbe36 https://www.encodeproject.org/files/ENCFF015JHG/@@download/ENCFF015JHG.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF114UPJ bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF145CAZ, ENCFF707NXH 3429862 ENCODE Processing Pipeline bc7fbcace730b80b2ed24ecc3ecc69f7 https://www.encodeproject.org/files/ENCFF114UPJ/@@download/ENCFF114UPJ.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF301DNK bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF145CAZ, ENCFF707NXH, ENCFF999PXI 4493579 ENCODE Processing Pipeline 70a5a664624707875920107dbfae9e19 https://www.encodeproject.org/files/ENCFF301DNK/@@download/ENCFF301DNK.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF373BXG bed narrowPeak conservative idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF015JHG, ENCFF114UPJ, ENCFF301DNK 748053 ENCODE Processing Pipeline 42fb651ef2df49e0d8e928cf08ce283c https://www.encodeproject.org/files/ENCFF373BXG/@@download/ENCFF373BXG.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF528VFN bed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF015JHG, ENCFF114UPJ, ENCFF301DNK 789908 ENCODE Processing Pipeline a0f666e95ff0fbc506d613ddf1c48a4a https://www.encodeproject.org/files/ENCFF528VFN/@@download/ENCFF528VFN.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF340KBU bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 2 ENCFF176KZS, ENCFF248XON, ENCFF882WXC 5980106 ENCODE Processing Pipeline b7257e5ccf9d3d48b1ebe7014d95db9e https://www.encodeproject.org/files/ENCFF340KBU/@@download/ENCFF340KBU.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF661MDB bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 1 ENCFF248XON, ENCFF546BUY, ENCFF882WXC 6040912 ENCODE Processing Pipeline a4cb525e429364f54f2f0c7de41a7be8 https://www.encodeproject.org/files/ENCFF661MDB/@@download/ENCFF661MDB.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF141UZZ bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 1, 2 ENCFF176KZS, ENCFF248XON, ENCFF546BUY, ENCFF882WXC 6642770 ENCODE Processing Pipeline 16213ef39369b7557a7e8f22c47f4a74 https://www.encodeproject.org/files/ENCFF141UZZ/@@download/ENCFF141UZZ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF310IQK bed narrowPeak conservative idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 1, 2 ENCFF141UZZ, ENCFF340KBU, ENCFF419RSJ, ENCFF661MDB 774796 ENCODE Processing Pipeline d499772b75e61d9e4a34aacf1c7c5c9f https://www.encodeproject.org/files/ENCFF310IQK/@@download/ENCFF310IQK.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF846FYU bed narrowPeak optimal idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 1, 2 ENCFF141UZZ, ENCFF340KBU, ENCFF419RSJ, ENCFF661MDB 800808 ENCODE Processing Pipeline e3d9ae45ef043ed3309e9709d61d9c1b https://www.encodeproject.org/files/ENCFF846FYU/@@download/ENCFF846FYU.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF776XRJ bed narrowPeak optimal idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF345DIK, ENCFF930XLW, ENCFF996USV 797130 ENCODE Processing Pipeline 84d8d7eb11a665074e4b30090ff0197d https://www.encodeproject.org/files/ENCFF776XRJ/@@download/ENCFF776XRJ.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF930XLW bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 1, 2 ENCFF044VWD, ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 6640442 ENCODE Processing Pipeline ad963195d159bd72a2fdb15d8472eec3 https://www.encodeproject.org/files/ENCFF930XLW/@@download/ENCFF930XLW.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF730MHI bed narrowPeak conservative idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF345DIK, ENCFF930XLW, ENCFF996USV 771607 ENCODE Processing Pipeline eb38f18b91de19c6aafeca7eb8670dfb https://www.encodeproject.org/files/ENCFF730MHI/@@download/ENCFF730MHI.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF996USV bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 1 ENCFF044VWD, ENCFF812MYK, ENCFF831TJC 6041227 ENCODE Processing Pipeline 454f7046e17bdacfc161100d68b14f20 https://www.encodeproject.org/files/ENCFF996USV/@@download/ENCFF996USV.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF345DIK bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells embryonic female 5 day Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-11-23 ENCODE 2 ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 5978713 ENCODE Processing Pipeline a57a7b2e3e30800333e3ca4060d723c6 https://www.encodeproject.org/files/ENCFF345DIK/@@download/ENCFF345DIK.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO poor library complexity, partially characterized antibody ENCFF703CWY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF092GNG 48052 ENCODE Processing Pipeline 5fa4caad711757638202faf1e0be22b2 https://www.encodeproject.org/files/ENCFF703CWY/@@download/ENCFF703CWY.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF092GNG bed narrowPeak peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF308BIP, ENCFF872MDZ 5203560 ENCODE Processing Pipeline 7b59c16851efa82e88aa0df8ed64ecdf https://www.encodeproject.org/files/ENCFF092GNG/@@download/ENCFF092GNG.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF882LTN bed narrowPeak peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF607RXM, ENCFF909IAW 5213263 ENCODE Processing Pipeline 5d7fa734e5207ab4d43ce77e3bb6e993 https://www.encodeproject.org/files/ENCFF882LTN/@@download/ENCFF882LTN.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF481CNC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF882LTN 48638 ENCODE Processing Pipeline c9922804b819d6894cd9907cf0d1e9d1 https://www.encodeproject.org/files/ENCFF481CNC/@@download/ENCFF481CNC.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF001USY bed narrowPeak peaks ENCSR000DLS ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1387116 Vishwanath Iyer, UTA aefe60b388b602f45494cebd7fe7b00c https://www.encodeproject.org/files/ENCFF001USY/@@download/ENCFF001USY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002DAX bed narrowPeak optimal idr thresholded peaks ENCSR000DLS ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 754913 ENCODE Consortium Analysis Working Group ecbae2a248b1e92b1f5eb99c8d762a63 https://www.encodeproject.org/files/ENCFF002DAX/@@download/ENCFF002DAX.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001USE bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1381266 Vishwanath Iyer, UTA 285966ae09ce968994fae18e23a07669 https://www.encodeproject.org/files/ENCFF001USE/@@download/ENCFF001USE.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF359RRS bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF505IMK 2296518 ENCODE Processing Pipeline d3394e7c95621a3011530fd20caede75 https://www.encodeproject.org/files/ENCFF359RRS/@@download/ENCFF359RRS.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF986IZP bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF107SFO 3546979 ENCODE Processing Pipeline 8451efe65542684ad148f7676a23444c https://www.encodeproject.org/files/ENCFF986IZP/@@download/ENCFF986IZP.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF611FVS bed narrowPeak optimal idr thresholded peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF359RRS, ENCFF419RSJ, ENCFF651ELF, ENCFF986IZP 557310 ENCODE Processing Pipeline b7fe09d39caf4881b6d0ea6952b28432 https://www.encodeproject.org/files/ENCFF611FVS/@@download/ENCFF611FVS.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF651ELF bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF107SFO, ENCFF505IMK 3724688 ENCODE Processing Pipeline 526940b5c8161639cc55a3816fbd967c https://www.encodeproject.org/files/ENCFF651ELF/@@download/ENCFF651ELF.bed.gz GRCh38 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF251JON bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF384QVL, ENCFF531PKS 3572878 ENCODE Processing Pipeline 6936922484264644e8d91f08d0c8ad1d https://www.encodeproject.org/files/ENCFF251JON/@@download/ENCFF251JON.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF049XKA bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF384QVL, ENCFF666BHZ 2854269 ENCODE Processing Pipeline adfd22125195df800a1212c8a381ec51 https://www.encodeproject.org/files/ENCFF049XKA/@@download/ENCFF049XKA.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF927PCL bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF384QVL, ENCFF531PKS, ENCFF666BHZ 3719410 ENCODE Processing Pipeline 8ad138ada1b8cc65c31b70f841bec445 https://www.encodeproject.org/files/ENCFF927PCL/@@download/ENCFF927PCL.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF210PLK bed narrowPeak conservative idr thresholded peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 immortalized cell line unknown male 32 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF049XKA, ENCFF251JON, ENCFF927PCL 563417 ENCODE Processing Pipeline e0ba950f98c4bcacedd5503af90fa466 https://www.encodeproject.org/files/ENCFF210PLK/@@download/ENCFF210PLK.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing unfiltered alignments, biological replicates with identical biosample insufficient read depth ENCFF001UTB bed narrowPeak peaks ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell newborn unknown unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1096339 Vishwanath Iyer, UTA 822b039ee9aa4e2e5c8813657c2a970f https://www.encodeproject.org/files/ENCFF001UTB/@@download/ENCFF001UTB.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002DBA bed narrowPeak optimal idr thresholded peaks ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell newborn unknown unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 891419 ENCODE Consortium Analysis Working Group d488647dab782e3362984b6656a72d0b https://www.encodeproject.org/files/ENCFF002DBA/@@download/ENCFF002DBA.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001UTY bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1163615 Vishwanath Iyer, UTA 3e9e9a4015fdbb07ab56b493fb6a354a https://www.encodeproject.org/files/ENCFF001UTY/@@download/ENCFF001UTY.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments, missing derived_from insufficient read depth ENCFF867ERM bed narrowPeak optimal idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF329BNL, ENCFF417BGF, ENCFF427RBA 506571 ENCODE Processing Pipeline 5db1c38f26beabf07a70b2a3a8e67817 https://www.encodeproject.org/files/ENCFF867ERM/@@download/ENCFF867ERM.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF329BNL bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF781XST, ENCFF877UTE 1068829 ENCODE Processing Pipeline c2c71e56feccb082ef8ac1070f3896ce https://www.encodeproject.org/files/ENCFF329BNL/@@download/ENCFF329BNL.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF417BGF bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF305SDG, ENCFF781XST, ENCFF877UTE 2205048 ENCODE Processing Pipeline 30f547be203ff464bf995435d399e427 https://www.encodeproject.org/files/ENCFF417BGF/@@download/ENCFF417BGF.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF805RRO bed narrowPeak conservative idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF329BNL, ENCFF417BGF, ENCFF427RBA 441403 ENCODE Processing Pipeline bc336b09ceb08d0aebbf3f595a0a0985 https://www.encodeproject.org/files/ENCFF805RRO/@@download/ENCFF805RRO.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF623HQJ bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 ENCFF753GJH 1074269 ENCODE Processing Pipeline 8007aa0cf4379e333e1c6c8e5b3a8f8e https://www.encodeproject.org/files/ENCFF623HQJ/@@download/ENCFF623HQJ.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF427RBA bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF305SDG, ENCFF781XST 1343735 ENCODE Processing Pipeline 1bd02cf16715bd189abc6a24d0859a05 https://www.encodeproject.org/files/ENCFF427RBA/@@download/ENCFF427RBA.bed.gz hg19 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF896NMT bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 2 ENCFF018QYS 1323326 ENCODE Processing Pipeline 3b0f4ef01584592435817afb932d62e9 https://www.encodeproject.org/files/ENCFF896NMT/@@download/ENCFF896NMT.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF491YZO bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF018QYS, ENCFF753GJH 2193410 ENCODE Processing Pipeline 92535a1fa18ee6f0a70fda2d172826f8 https://www.encodeproject.org/files/ENCFF491YZO/@@download/ENCFF491YZO.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF547CLG bed narrowPeak conservative idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF491YZO, ENCFF623HQJ, ENCFF896NMT 441876 ENCODE Processing Pipeline 8ed48d09623a31c04856ab2e15822472 https://www.encodeproject.org/files/ENCFF547CLG/@@download/ENCFF547CLG.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF861NDU bed narrowPeak optimal idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue adult male 54 year, 60 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF491YZO, ENCFF623HQJ, ENCFF896NMT 503242 ENCODE Processing Pipeline 250b86d4ed5e1f7de85ef2e062521321 https://www.encodeproject.org/files/ENCFF861NDU/@@download/ENCFF861NDU.bed.gz GRCh38 released mild to moderate bottlenecking missing unfiltered alignments insufficient read depth ENCFF001USK bed narrowPeak peaks ENCSR000DKY ChIP-seq EFO:0002786 GM12892 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1222320 Vishwanath Iyer, UTA 62afc2eada9b495bce82f8793934e08b https://www.encodeproject.org/files/ENCFF001USK/@@download/ENCFF001USK.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF002DAM bed narrowPeak optimal idr thresholded peaks ENCSR000DKY ChIP-seq EFO:0002786 GM12892 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 940006 ENCODE Consortium Analysis Working Group 5c58039be600990f19971dc8e0f5adc7 https://www.encodeproject.org/files/ENCFF002DAM/@@download/ENCFF002DAM.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from missing possible_controls, insufficient read depth ENCFF002CEW bed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 770760 ENCODE Consortium Analysis Working Group 434e33ec51c578c335d90954e33fb871 https://www.encodeproject.org/files/ENCFF002CEW/@@download/ENCFF002CEW.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length missing derived_from insufficient read depth ENCFF113DAW bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1 ENCFF191SLR, ENCFF350LQZ, ENCFF717LQB 2926748 ENCODE Processing Pipeline e4f9f3a12e9ca2ddc1ff6d8b828d1ff7 https://www.encodeproject.org/files/ENCFF113DAW/@@download/ENCFF113DAW.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF527FXX bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW 4532432 ENCODE Processing Pipeline 9d65dee2b43c968f92488a2be9b805a7 https://www.encodeproject.org/files/ENCFF527FXX/@@download/ENCFF527FXX.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF857XBX bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW, ENCFF717LQB 5549540 ENCODE Processing Pipeline 7e77e9a6500e464ba63339a99038198b https://www.encodeproject.org/files/ENCFF857XBX/@@download/ENCFF857XBX.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF415WKV bed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF113DAW, ENCFF527FXX, ENCFF857XBX 576020 ENCODE Processing Pipeline 86f81256e7eb31e31845b1b9a9c45e35 https://www.encodeproject.org/files/ENCFF415WKV/@@download/ENCFF415WKV.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF678OVT bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1 ENCFF216TIF, ENCFF414QUV, ENCFF639TYV 2832609 ENCODE Processing Pipeline ffc7ba205ba199ce0ac24869e9c3c389 https://www.encodeproject.org/files/ENCFF678OVT/@@download/ENCFF678OVT.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF567MRO bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 2 ENCFF216TIF, ENCFF616NWB, ENCFF639TYV 4563303 ENCODE Processing Pipeline b214ded1f79a7372c1ce80c0032c295d https://www.encodeproject.org/files/ENCFF567MRO/@@download/ENCFF567MRO.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF660ZJK bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF216TIF, ENCFF414QUV, ENCFF616NWB, ENCFF639TYV 5512088 ENCODE Processing Pipeline 74aa5320ed35586263c91d275fcd4f0f https://www.encodeproject.org/files/ENCFF660ZJK/@@download/ENCFF660ZJK.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF046QCH bed narrowPeak conservative idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF567MRO, ENCFF660ZJK, ENCFF678OVT 573544 ENCODE Processing Pipeline cb8aa5ce2f523b13538fbe916f86c09d https://www.encodeproject.org/files/ENCFF046QCH/@@download/ENCFF046QCH.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF148BSH bed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF567MRO, ENCFF660ZJK, ENCFF678OVT 568968 ENCODE Processing Pipeline b3ff0cf4ef1e7b90313c4167f9c06bf8 https://www.encodeproject.org/files/ENCFF148BSH/@@download/ENCFF148BSH.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF627DHJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF872LIM 727137 ENCODE Processing Pipeline e6357aa39a54b4f2d04f11d8a4f3cb5c https://www.encodeproject.org/files/ENCFF627DHJ/@@download/ENCFF627DHJ.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF872LIM bed narrowPeak peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF570ZSH, ENCFF891NAK 6375548 ENCODE Processing Pipeline 098ff0d0ac500604d6bb35c8ef775399 https://www.encodeproject.org/files/ENCFF872LIM/@@download/ENCFF872LIM.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF114FNT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF814SXM 731471 ENCODE Processing Pipeline be22e19640250c3acb7a10215209ac9f https://www.encodeproject.org/files/ENCFF114FNT/@@download/ENCFF114FNT.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF814SXM bed narrowPeak peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF490SNQ, ENCFF556CQT 6399073 ENCODE Processing Pipeline 6d2063004b505b0d11a94af358112411 https://www.encodeproject.org/files/ENCFF814SXM/@@download/ENCFF814SXM.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF435JAM bed narrowPeak peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF900VZW, ENCFF975GAM 6914692 ENCODE Processing Pipeline e833e9698dc5df2dabd14273a537c736 https://www.encodeproject.org/files/ENCFF435JAM/@@download/ENCFF435JAM.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF239EJM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF435JAM 629010 ENCODE Processing Pipeline 999a4fc5ad3abd222034a1737795fa25 https://www.encodeproject.org/files/ENCFF239EJM/@@download/ENCFF239EJM.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF691IPU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF712PGZ 643176 ENCODE Processing Pipeline f7dcdce4c0002aea60631779c9aa27d2 https://www.encodeproject.org/files/ENCFF691IPU/@@download/ENCFF691IPU.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF712PGZ bed narrowPeak peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF599CGM, ENCFF804BRR 6964759 ENCODE Processing Pipeline c02701e88fc6bb981d6bf0015a036af9 https://www.encodeproject.org/files/ENCFF712PGZ/@@download/ENCFF712PGZ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF779QTR bed narrowPeak peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF282SQP, ENCFF745BKE 6480153 ENCODE Processing Pipeline 439031ea4ee45d2a7377621e80087599 https://www.encodeproject.org/files/ENCFF779QTR/@@download/ENCFF779QTR.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF622LJD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF779QTR 665695 ENCODE Processing Pipeline daea7f8fce240eb4f1d04843574efc65 https://www.encodeproject.org/files/ENCFF622LJD/@@download/ENCFF622LJD.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF412TMX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF636RLY 664490 ENCODE Processing Pipeline 6cd443439225358a47a29908bd08f39a https://www.encodeproject.org/files/ENCFF412TMX/@@download/ENCFF412TMX.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF636RLY bed narrowPeak peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF069JAM, ENCFF838GUO 6472204 ENCODE Processing Pipeline 2d2fa18ba58453ec8ba341eedfdeb45d https://www.encodeproject.org/files/ENCFF636RLY/@@download/ENCFF636RLY.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF450XID bed narrowPeak peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF197PVC, ENCFF662LAZ 6170994 ENCODE Processing Pipeline b1a430c00c8370217dc3d85c7b14bc81 https://www.encodeproject.org/files/ENCFF450XID/@@download/ENCFF450XID.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF176MPT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF450XID 462391 ENCODE Processing Pipeline 198e03eb454b40ea6061ffd6a6ec7b7d https://www.encodeproject.org/files/ENCFF176MPT/@@download/ENCFF176MPT.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF099LBC bed narrowPeak peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF052DDM, ENCFF132JEX 6103621 ENCODE Processing Pipeline ab7ff5f2d915ef680871b5183f1e1b1b https://www.encodeproject.org/files/ENCFF099LBC/@@download/ENCFF099LBC.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF508LRF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF099LBC, ENCFF419RSJ 435831 ENCODE Processing Pipeline da4381c32108a407fb016978d3eb5db7 https://www.encodeproject.org/files/ENCFF508LRF/@@download/ENCFF508LRF.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF973ISL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF927QZZ 13547 ENCODE Processing Pipeline f7113629efdfe6fefcc56716b1a66154 https://www.encodeproject.org/files/ENCFF973ISL/@@download/ENCFF973ISL.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF927QZZ bed narrowPeak peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF329KGR, ENCFF982YZF 4171062 ENCODE Processing Pipeline e6b6602f40460f8ff484ddd7ba20c247 https://www.encodeproject.org/files/ENCFF927QZZ/@@download/ENCFF927QZZ.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF208JPL bed narrowPeak peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF667KCG, ENCFF997ZMP 4169408 ENCODE Processing Pipeline aee5e716384b904e91adf7f2c83bda8e https://www.encodeproject.org/files/ENCFF208JPL/@@download/ENCFF208JPL.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF688KFE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF208JPL, ENCFF419RSJ 13138 ENCODE Processing Pipeline fdf00ab7e2e3beb37b9880e597c519d3 https://www.encodeproject.org/files/ENCFF688KFE/@@download/ENCFF688KFE.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO, missing unfiltered alignments ENCFF722THT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF041YKU 326706 ENCODE Processing Pipeline 328ef659513e75ffb75fb59470c7708c https://www.encodeproject.org/files/ENCFF722THT/@@download/ENCFF722THT.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF041YKU bed narrowPeak peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF152VGP, ENCFF531FEB 6162798 ENCODE Processing Pipeline 95c7ae3bbbc4d9d94190649e99d2865d https://www.encodeproject.org/files/ENCFF041YKU/@@download/ENCFF041YKU.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF739DVS bed narrowPeak peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF136XMZ, ENCFF516KHW 6159012 ENCODE Processing Pipeline a49cced375273818f6336005300a5c56 https://www.encodeproject.org/files/ENCFF739DVS/@@download/ENCFF739DVS.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF113XGW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF739DVS 324248 ENCODE Processing Pipeline 0d61c26f2937f581283f125fea049c3e https://www.encodeproject.org/files/ENCFF113XGW/@@download/ENCFF113XGW.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF649WCV bed narrowPeak peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF029BUR, ENCFF576YJV 5941629 ENCODE Processing Pipeline 030c1c00e909666d29987d7f17faa26c https://www.encodeproject.org/files/ENCFF649WCV/@@download/ENCFF649WCV.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF885KKQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF649WCV 569241 ENCODE Processing Pipeline 11947c1a129809b0bdcc7eb665ca3b29 https://www.encodeproject.org/files/ENCFF885KKQ/@@download/ENCFF885KKQ.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF559LDF bed narrowPeak peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF642ALB, ENCFF820JHF 5952926 ENCODE Processing Pipeline f9e699ad52d89b1b6f44376cb823e680 https://www.encodeproject.org/files/ENCFF559LDF/@@download/ENCFF559LDF.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF644JKD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF559LDF 575553 ENCODE Processing Pipeline 64941dd301b5402d951660f2f404bb49 https://www.encodeproject.org/files/ENCFF644JKD/@@download/ENCFF644JKD.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF146REQ bed narrowPeak peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF561ZZE, ENCFF990EXV 6455685 ENCODE Processing Pipeline 8c21cf6410066a2c361f5eb7b13e2c69 https://www.encodeproject.org/files/ENCFF146REQ/@@download/ENCFF146REQ.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF432XLE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF146REQ 443651 ENCODE Processing Pipeline 6871e52c9ac95a1732d9d852967f62b7 https://www.encodeproject.org/files/ENCFF432XLE/@@download/ENCFF432XLE.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF300WML bed narrowPeak peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF232BJL, ENCFF951HNT 6432939 ENCODE Processing Pipeline 1dc998c807543234db68bd2ab4cc4d3e https://www.encodeproject.org/files/ENCFF300WML/@@download/ENCFF300WML.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF788RFY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF300WML, ENCFF419RSJ 426981 ENCODE Processing Pipeline 2f9020585531b5ccd6816b5a4f22a56c https://www.encodeproject.org/files/ENCFF788RFY/@@download/ENCFF788RFY.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF039SAY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF468WHP 575816 ENCODE Processing Pipeline ae8bb1696f78bbd6fb772b79351c5c11 https://www.encodeproject.org/files/ENCFF039SAY/@@download/ENCFF039SAY.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF468WHP bed narrowPeak peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF027EKQ, ENCFF779SGY 6923657 ENCODE Processing Pipeline c95d32d0f84b0fa3da94d6a881bbbd2c https://www.encodeproject.org/files/ENCFF468WHP/@@download/ENCFF468WHP.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF933XOI bed narrowPeak peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF162JEL, ENCFF552ZFG 6899273 ENCODE Processing Pipeline ed7543db68061087a29db1d1714bb814 https://www.encodeproject.org/files/ENCFF933XOI/@@download/ENCFF933XOI.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF825XAC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF933XOI 563784 ENCODE Processing Pipeline ca8ed9477ebf5573ac20c1823e2010a3 https://www.encodeproject.org/files/ENCFF825XAC/@@download/ENCFF825XAC.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF435EDS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF294TXO 574385 ENCODE Processing Pipeline efb628c836df34c3be5196192b76c4f2 https://www.encodeproject.org/files/ENCFF435EDS/@@download/ENCFF435EDS.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF294TXO bed narrowPeak peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-04-04 ENCODE 1 ENCFF386INF, ENCFF629CBG 6152257 ENCODE Processing Pipeline 3c3f3728aaf8c7ab0d4e3aa350b057dd https://www.encodeproject.org/files/ENCFF294TXO/@@download/ENCFF294TXO.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF577LSV bed narrowPeak peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-04-04 ENCODE 1 ENCFF288VXA, ENCFF827XZB 6212368 ENCODE Processing Pipeline 8ac5e3a7df050fae8623476dd340c60a https://www.encodeproject.org/files/ENCFF577LSV/@@download/ENCFF577LSV.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF897UFD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-04-04 ENCODE 1 ENCFF419RSJ, ENCFF577LSV 595143 ENCODE Processing Pipeline 6af4db010840ed4cec4fd6a40ba85a62 https://www.encodeproject.org/files/ENCFF897UFD/@@download/ENCFF897UFD.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF735EHK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-19 ENCODE 1 ENCFF001TDO, ENCFF586WMF 551416 ENCODE Processing Pipeline 5df1132eb9e3683ddbd6ea3b5ccf3597 https://www.encodeproject.org/files/ENCFF735EHK/@@download/ENCFF735EHK.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF586WMF bed narrowPeak peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-19 ENCODE 1 ENCFF239CRJ, ENCFF992PUN 6444911 ENCODE Processing Pipeline a498c601f0df7db09aee8724ad4dece5 https://www.encodeproject.org/files/ENCFF586WMF/@@download/ENCFF586WMF.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF505WZO bed narrowPeak peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-19 ENCODE 1 ENCFF596ZPN, ENCFF703WUV 6405696 ENCODE Processing Pipeline ed842266038e2d56382d315514d5577e https://www.encodeproject.org/files/ENCFF505WZO/@@download/ENCFF505WZO.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF725FJK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-19 ENCODE 1 ENCFF419RSJ, ENCFF505WZO 536750 ENCODE Processing Pipeline 90d293ea98214b85b90908c222d86203 https://www.encodeproject.org/files/ENCFF725FJK/@@download/ENCFF725FJK.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF282BOE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF513GHF 592518 ENCODE Processing Pipeline e7ce7c713fa139206baef0195a264860 https://www.encodeproject.org/files/ENCFF282BOE/@@download/ENCFF282BOE.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF513GHF bed narrowPeak peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF037HFH, ENCFF976VAT 6543360 ENCODE Processing Pipeline 624f613eb64f5610d48fe6d1dbd7affe https://www.encodeproject.org/files/ENCFF513GHF/@@download/ENCFF513GHF.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF815HSK bed narrowPeak peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF242TYP, ENCFF590TPY 6564382 ENCODE Processing Pipeline b08eb40b373de3706608f2dd3a694622 https://www.encodeproject.org/files/ENCFF815HSK/@@download/ENCFF815HSK.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF179YWB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF815HSK 598611 ENCODE Processing Pipeline 10836b454745d0f8c7ed0d856c50cec5 https://www.encodeproject.org/files/ENCFF179YWB/@@download/ENCFF179YWB.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF856FKS bed narrowPeak peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF595PUD, ENCFF936JKF 5771661 ENCODE Processing Pipeline 808715f13a98f4f910cdb02c9dd57904 https://www.encodeproject.org/files/ENCFF856FKS/@@download/ENCFF856FKS.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF148LAV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF856FKS 233770 ENCODE Processing Pipeline 079bfee266a2afae180dc1daead26294 https://www.encodeproject.org/files/ENCFF148LAV/@@download/ENCFF148LAV.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF102XCU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF854YVQ 235948 ENCODE Processing Pipeline a85c1d715a9a0cf315f689b2566eb281 https://www.encodeproject.org/files/ENCFF102XCU/@@download/ENCFF102XCU.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF854YVQ bed narrowPeak peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF016UQX, ENCFF256UVH 5785678 ENCODE Processing Pipeline 253f41dd879eea5d7f9a0db125d11f2e https://www.encodeproject.org/files/ENCFF854YVQ/@@download/ENCFF854YVQ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF562MDO bed narrowPeak peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF644OEB, ENCFF679FAU 5187744 ENCODE Processing Pipeline f0a8b258977ad2bda4f02855396e0036 https://www.encodeproject.org/files/ENCFF562MDO/@@download/ENCFF562MDO.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF767YMW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF562MDO 288082 ENCODE Processing Pipeline ad0c50f040130086c920b0d08f7ea218 https://www.encodeproject.org/files/ENCFF767YMW/@@download/ENCFF767YMW.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF289FHU bed narrowPeak peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF051LKD, ENCFF758JXA 5185288 ENCODE Processing Pipeline 78b9d3019b1e2e684e0ff40306e1180e https://www.encodeproject.org/files/ENCFF289FHU/@@download/ENCFF289FHU.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF579GUD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF289FHU, ENCFF419RSJ 286138 ENCODE Processing Pipeline 6ab125cc2822f9a39091dfaab6e9928e https://www.encodeproject.org/files/ENCFF579GUD/@@download/ENCFF579GUD.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF002CKF bed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1191204 ENCODE Consortium Analysis Working Group 1377acce5b4f8944e3f6ca12debd45d0 https://www.encodeproject.org/files/ENCFF002CKF/@@download/ENCFF002CKF.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF018FYT bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 2 ENCFF435DKZ 4517378 ENCODE Processing Pipeline bca791059416d8a8742a0358aee86cc8 https://www.encodeproject.org/files/ENCFF018FYT/@@download/ENCFF018FYT.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF168MWY bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178SXE, ENCFF435DKZ 5012326 ENCODE Processing Pipeline b9fae953cce2f57c52d080dca2467f72 https://www.encodeproject.org/files/ENCFF168MWY/@@download/ENCFF168MWY.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF467MCE bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1 ENCFF178SXE 4557476 ENCODE Processing Pipeline b123cdf1d19324a9f82c8575df55f7e3 https://www.encodeproject.org/files/ENCFF467MCE/@@download/ENCFF467MCE.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF252PLM bed narrowPeak conservative idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FYT, ENCFF168MWY, ENCFF419RSJ, ENCFF467MCE 818480 ENCODE Processing Pipeline 85b63599d806a528d71b921c134cc20c https://www.encodeproject.org/files/ENCFF252PLM/@@download/ENCFF252PLM.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF543WTP bed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FYT, ENCFF168MWY, ENCFF419RSJ, ENCFF467MCE 945660 ENCODE Processing Pipeline 9ea142ef1f326a6f169650abf716af98 https://www.encodeproject.org/files/ENCFF543WTP/@@download/ENCFF543WTP.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF487OYC bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249IWE, ENCFF346RZT 4558024 ENCODE Processing Pipeline e6182e7855053208ac2899d09d72a51b https://www.encodeproject.org/files/ENCFF487OYC/@@download/ENCFF487OYC.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF327TVJ bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF466SFU 4525639 ENCODE Processing Pipeline 74e9a09fbfe54eeeb20ac00a4e971cb3 https://www.encodeproject.org/files/ENCFF327TVJ/@@download/ENCFF327TVJ.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF297IFU bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249IWE, ENCFF346RZT, ENCFF466SFU 5015521 ENCODE Processing Pipeline 3ef5b0174a679daf3f7761d08e724175 https://www.encodeproject.org/files/ENCFF297IFU/@@download/ENCFF297IFU.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF329MOF bed narrowPeak conservative idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF297IFU, ENCFF327TVJ, ENCFF487OYC 816078 ENCODE Processing Pipeline 55e49c887d7a85977cc20da2f00b2607 https://www.encodeproject.org/files/ENCFF329MOF/@@download/ENCFF329MOF.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF237OKO bed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 immortalized cell line child male 15 year Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF297IFU, ENCFF327TVJ, ENCFF487OYC 948053 ENCODE Processing Pipeline 13e337503a6a9deb5c4953281268d9fa https://www.encodeproject.org/files/ENCFF237OKO/@@download/ENCFF237OKO.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF306XCP bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 2 ENCFF528IMZ 4567430 ENCODE Processing Pipeline e8cdd3b3e382e69918d942ef06db6b28 https://www.encodeproject.org/files/ENCFF306XCP/@@download/ENCFF306XCP.bed.gz GRCh38 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF181QAF bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 1, 2 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN, ENCFF977MAY 5294903 ENCODE Processing Pipeline 2a099513a97ecf061f3215513e48813e https://www.encodeproject.org/files/ENCFF181QAF/@@download/ENCFF181QAF.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF690BYG bed narrowPeak optimal idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF181QAF, ENCFF322UFN, ENCFF543EHV 653750 ENCODE Processing Pipeline b2a17b20c503b24c30195b69ff0f22f4 https://www.encodeproject.org/files/ENCFF690BYG/@@download/ENCFF690BYG.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF234OFQ bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 1, 2 ENCFF425QOU, ENCFF528IMZ 5294112 ENCODE Processing Pipeline fcb56f8d9c1a8a6cdb459ced2d899bc2 https://www.encodeproject.org/files/ENCFF234OFQ/@@download/ENCFF234OFQ.bed.gz GRCh38 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF143HEE bed narrowPeak optimal idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 1, 2 ENCFF234OFQ, ENCFF306XCP, ENCFF403GVA, ENCFF419RSJ 655157 ENCODE Processing Pipeline c65935f2f20308cf61ed4321acb9932f https://www.encodeproject.org/files/ENCFF143HEE/@@download/ENCFF143HEE.bed.gz GRCh38 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF322UFN bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN 4691621 ENCODE Processing Pipeline 17235ddc4779af39ef2599504b5ccb70 https://www.encodeproject.org/files/ENCFF322UFN/@@download/ENCFF322UFN.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF543EHV bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 2 ENCFF498EIA, ENCFF631FAS, ENCFF977MAY 4568839 ENCODE Processing Pipeline 4b258c14634d117050aaa5b3612442c2 https://www.encodeproject.org/files/ENCFF543EHV/@@download/ENCFF543EHV.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF511PPM bed narrowPeak conservative idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF181QAF, ENCFF322UFN, ENCFF543EHV 619432 ENCODE Processing Pipeline 93ed26c83428841d8b2d8a306ae4ef0e https://www.encodeproject.org/files/ENCFF511PPM/@@download/ENCFF511PPM.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF403GVA bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 1 ENCFF425QOU 4689120 ENCODE Processing Pipeline 8639561a4b80beeff91015bdff25913d https://www.encodeproject.org/files/ENCFF403GVA/@@download/ENCFF403GVA.bed.gz GRCh38 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF536RRU bed narrowPeak conservative idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue child female 6 year, 4 year Homo sapiens CTCF-human ENCAB000AXU DNA False 2017-04-14 ENCODE 1, 2 ENCFF234OFQ, ENCFF306XCP, ENCFF403GVA, ENCFF419RSJ 618835 ENCODE Processing Pipeline 45ed585b8da500450d0628138f2e0e7e https://www.encodeproject.org/files/ENCFF536RRU/@@download/ENCFF536RRU.bed.gz GRCh38 released low read depth, low read length experiment not submitted to GEO missing input control ENCFF001UTR bed narrowPeak peaks ENCSR000DML ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1 1 1201586 Vishwanath Iyer, UTA 44b518e1404ae5f3b5ab8c9aeafaca71 https://www.encodeproject.org/files/ENCFF001UTR/@@download/ENCFF001UTR.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF002DBL bed narrowPeak optimal idr thresholded peaks ENCSR000DML ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1161292 ENCODE Consortium Analysis Working Group ea48635d4b9f9f1045e967c2f5e54d78 https://www.encodeproject.org/files/ENCFF002DBL/@@download/ENCFF002DBL.bed.gz hg19 released moderate library complexity, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF001UTP bed narrowPeak peaks ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1325233 Vishwanath Iyer, UTA 2a7778dac2cb0e23cb3a83c5eea41cf9 https://www.encodeproject.org/files/ENCFF001UTP/@@download/ENCFF001UTP.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF002DBM bed narrowPeak optimal idr thresholded peaks ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 immortalized cell line adult female 69 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-03-17 ENCODE 1209029 ENCODE Consortium Analysis Working Group 160ceb49b8fe9537a5bbe91df7dd428a https://www.encodeproject.org/files/ENCFF002DBM/@@download/ENCFF002DBM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length missing unfiltered alignments, biological replicates with identical biosample, missing derived_from ENCFF001XSD bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQY 782666 John Stamatoyannopoulos, UW fd1021882893908aa292899d6bc06f46 https://www.encodeproject.org/files/ENCFF001XSD/@@download/ENCFF001XSD.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF001XSE bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRF 776564 John Stamatoyannopoulos, UW 0c1112e2abc6aefb6a2c453d39ab8034 https://www.encodeproject.org/files/ENCFF001XSE/@@download/ENCFF001XSE.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF002DDF bed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HQY, ENCFF001HRF 826485 ENCODE Consortium Analysis Working Group 239dcdae7b518c7180b066742c0cbc90 https://www.encodeproject.org/files/ENCFF002DDF/@@download/ENCFF002DDF.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF423CGM bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF115YWW, ENCFF874XSI 2213146 ENCODE Processing Pipeline b31ae70ee0ca673fcd4c71fa4c19983b https://www.encodeproject.org/files/ENCFF423CGM/@@download/ENCFF423CGM.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF516DWM bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF115YWW, ENCFF464SZY 2576743 ENCODE Processing Pipeline 2f300c3d6487755c9a1d25732754bd36 https://www.encodeproject.org/files/ENCFF516DWM/@@download/ENCFF516DWM.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF832CJL bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF115YWW, ENCFF464SZY, ENCFF874XSI 4133934 ENCODE Processing Pipeline 26972eb932d183a648badcaa72abe9e9 https://www.encodeproject.org/files/ENCFF832CJL/@@download/ENCFF832CJL.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF010WHH bed narrowPeak conservative idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF423CGM, ENCFF516DWM, ENCFF832CJL 689278 ENCODE Processing Pipeline 7b5c53430643428d64b767a25b6ccaec https://www.encodeproject.org/files/ENCFF010WHH/@@download/ENCFF010WHH.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF674KUN bed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF423CGM, ENCFF516DWM, ENCFF832CJL 706934 ENCODE Processing Pipeline 5c52fc1346475bd4a46d02e3667a0da1 https://www.encodeproject.org/files/ENCFF674KUN/@@download/ENCFF674KUN.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF583GIR bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF007XGO, ENCFF213ZXO 2627094 ENCODE Processing Pipeline f78b903b92860b4aee482b081121c9f2 https://www.encodeproject.org/files/ENCFF583GIR/@@download/ENCFF583GIR.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF536XBD bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF007XGO, ENCFF213ZXO, ENCFF370MLP 4151416 ENCODE Processing Pipeline 6959d61a0cf052c0ccec1bde83e2763b https://www.encodeproject.org/files/ENCFF536XBD/@@download/ENCFF536XBD.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF168VBK bed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF444ZJW, ENCFF536XBD, ENCFF583GIR 708472 ENCODE Processing Pipeline d51a91608457f8beecc7c702e4116d49 https://www.encodeproject.org/files/ENCFF168VBK/@@download/ENCFF168VBK.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF444ZJW bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF213ZXO, ENCFF370MLP 2184424 ENCODE Processing Pipeline e1c31d15c3d4b204e1c3dbc6c6351d53 https://www.encodeproject.org/files/ENCFF444ZJW/@@download/ENCFF444ZJW.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF727BRP bed narrowPeak conservative idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF444ZJW, ENCFF536XBD, ENCFF583GIR 688853 ENCODE Processing Pipeline 94666545c3220f31f5dc5435984bc283 https://www.encodeproject.org/files/ENCFF727BRP/@@download/ENCFF727BRP.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF571KJQ bed narrowPeak peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF473HRH, ENCFF847NEY 7148874 ENCODE Processing Pipeline 0b1bee6b8255bda8362d44ac6f64c8f3 https://www.encodeproject.org/files/ENCFF571KJQ/@@download/ENCFF571KJQ.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF628TDS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF571KJQ 769290 ENCODE Processing Pipeline cd58607413b78b9adb9cac4287c16c79 https://www.encodeproject.org/files/ENCFF628TDS/@@download/ENCFF628TDS.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF875ZVM bed narrowPeak peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF260NKL, ENCFF831EFP 7139192 ENCODE Processing Pipeline df7c713a0569232587603dbc9a8d7a56 https://www.encodeproject.org/files/ENCFF875ZVM/@@download/ENCFF875ZVM.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF872XQU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF875ZVM 769847 ENCODE Processing Pipeline 96a6addb7f97f575dfb29ed32e9e168f https://www.encodeproject.org/files/ENCFF872XQU/@@download/ENCFF872XQU.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF009KHF bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 1 ENCFF186KKP, ENCFF511OFO 5212976 ENCODE Processing Pipeline d63f378004a7498bc252497eea084048 https://www.encodeproject.org/files/ENCFF009KHF/@@download/ENCFF009KHF.bed.gz GRCh38 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF146TJM bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 2 ENCFF377EHJ, ENCFF550VRT 5970334 ENCODE Processing Pipeline 96f797a34cf8dc81d319e411529146ca https://www.encodeproject.org/files/ENCFF146TJM/@@download/ENCFF146TJM.bed.gz GRCh38 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF682EDA bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 1, 2 ENCFF186KKP, ENCFF377EHJ, ENCFF511OFO, ENCFF550VRT 6981673 ENCODE Processing Pipeline 6642d80b39eb9bfa0e0ca3be9d38a7d4 https://www.encodeproject.org/files/ENCFF682EDA/@@download/ENCFF682EDA.bed.gz GRCh38 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF779ZMJ bed narrowPeak optimal idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 1, 2 ENCFF009KHF, ENCFF146TJM, ENCFF419RSJ, ENCFF682EDA 699398 ENCODE Processing Pipeline 9fd22559e546cf79735e5e9322722eb1 https://www.encodeproject.org/files/ENCFF779ZMJ/@@download/ENCFF779ZMJ.bed.gz GRCh38 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF974RFW bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 1 ENCFF011CRJ, ENCFF824DBS 6536918 ENCODE Processing Pipeline 0cb1fa6b766990b698099b6a1366dd10 https://www.encodeproject.org/files/ENCFF974RFW/@@download/ENCFF974RFW.bed.gz hg19 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF691NVX bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 2 ENCFF011BPU, ENCFF450BPA 5980204 ENCODE Processing Pipeline b31ee325e890e064436b069b008e24a3 https://www.encodeproject.org/files/ENCFF691NVX/@@download/ENCFF691NVX.bed.gz hg19 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF507RFD bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 1, 2 ENCFF011BPU, ENCFF011CRJ, ENCFF450BPA, ENCFF824DBS 6993335 ENCODE Processing Pipeline 270aeefa42165913757b6f912bd99d58 https://www.encodeproject.org/files/ENCFF507RFD/@@download/ENCFF507RFD.bed.gz hg19 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF208LHQ bed narrowPeak conservative idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 1, 2 ENCFF001TDO, ENCFF507RFD, ENCFF691NVX, ENCFF974RFW 713631 ENCODE Processing Pipeline 5200a71791e80ea84e0b6a180f83c8c5 https://www.encodeproject.org/files/ENCFF208LHQ/@@download/ENCFF208LHQ.bed.gz hg19 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF782KFG bed narrowPeak optimal idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S immortalized cell line adult female 42 year Homo sapiens CTCF-human ENCAB000AXX DNA False 2016-08-11 ENCODE 1, 2 ENCFF001TDO, ENCFF507RFD, ENCFF691NVX, ENCFF974RFW 751199 ENCODE Processing Pipeline 0c81256878b5c45a50617e772db57427 https://www.encodeproject.org/files/ENCFF782KFG/@@download/ENCFF782KFG.bed.gz hg19 released mixed read lengths, low read length experiment not submitted to GEO, missing unfiltered alignments partially characterized antibody ENCFF566UPM bed narrowPeak peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF106EBG, ENCFF877TJY 5615141 ENCODE Processing Pipeline e03992ef808a39698d072763307d482a https://www.encodeproject.org/files/ENCFF566UPM/@@download/ENCFF566UPM.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF156VNT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF566UPM 509551 ENCODE Processing Pipeline ef61263190c664f2b82fc7a77f2dd8da https://www.encodeproject.org/files/ENCFF156VNT/@@download/ENCFF156VNT.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF900GKE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF401WKA, ENCFF419RSJ 511120 ENCODE Processing Pipeline 504df33facb5d8453e5ba1e76c18d8c5 https://www.encodeproject.org/files/ENCFF900GKE/@@download/ENCFF900GKE.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF401WKA bed narrowPeak peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF221DPL, ENCFF533JZM 5618542 ENCODE Processing Pipeline 14698e67f0795fb707ceb7d410b9c65c https://www.encodeproject.org/files/ENCFF401WKA/@@download/ENCFF401WKA.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF002CFF bed narrowPeak optimal idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1115884 ENCODE Consortium Analysis Working Group ee768cfc76a01e009e13592fff19b850 https://www.encodeproject.org/files/ENCFF002CFF/@@download/ENCFF002CFF.bed.gz hg19 archived borderline replicate concordance, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length mismatched file status, missing derived_from insufficient read depth ENCFF001XNB bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HAP 756857 John Stamatoyannopoulos, UW b2b8773c887cd76b652c098c88503eb9 https://www.encodeproject.org/files/ENCFF001XNB/@@download/ENCFF001XNB.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF001XNC bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAR 820524 John Stamatoyannopoulos, UW e4f67fbb8502d9d6a14a8d9035605c42 https://www.encodeproject.org/files/ENCFF001XNC/@@download/ENCFF001XNC.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF002DCE bed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HAP, ENCFF001HAR 930755 ENCODE Consortium Analysis Working Group 60012a39f4d1835552dfba16dc8331a7 https://www.encodeproject.org/files/ENCFF002DCE/@@download/ENCFF002DCE.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF946NYT bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF186FRO, ENCFF545IDM 3206837 ENCODE Processing Pipeline 28c7579b7db6fcc71aa729634ac63f74 https://www.encodeproject.org/files/ENCFF946NYT/@@download/ENCFF946NYT.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF239IHC bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF186FRO, ENCFF545IDM, ENCFF993RDX 4520945 ENCODE Processing Pipeline 67c7e229692f837709fa5bc1e5857a14 https://www.encodeproject.org/files/ENCFF239IHC/@@download/ENCFF239IHC.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF897RQN bed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239IHC, ENCFF419RSJ, ENCFF866KZX, ENCFF946NYT 811566 ENCODE Processing Pipeline 6387b03f7c26088af0dceee7900d9db4 https://www.encodeproject.org/files/ENCFF897RQN/@@download/ENCFF897RQN.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF866KZX bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF186FRO, ENCFF993RDX 4144628 ENCODE Processing Pipeline 63b17a3512cb0627605f3b10c872cc17 https://www.encodeproject.org/files/ENCFF866KZX/@@download/ENCFF866KZX.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF634TZO bed narrowPeak conservative idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239IHC, ENCFF419RSJ, ENCFF866KZX, ENCFF946NYT 783065 ENCODE Processing Pipeline 080519ead00c0bd80cf840db80f778f3 https://www.encodeproject.org/files/ENCFF634TZO/@@download/ENCFF634TZO.bed.gz GRCh38 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF276JDQ bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF131LGY, ENCFF451AFR, ENCFF524OIZ 4317070 ENCODE Processing Pipeline a93fe4cdab3d7d93044671b614fa3f7f https://www.encodeproject.org/files/ENCFF276JDQ/@@download/ENCFF276JDQ.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF830SNU bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF131LGY, ENCFF524OIZ 3974507 ENCODE Processing Pipeline 11f636264bfc02c3ed2b9491977cee63 https://www.encodeproject.org/files/ENCFF830SNU/@@download/ENCFF830SNU.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF174YEU bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF131LGY, ENCFF451AFR 3018489 ENCODE Processing Pipeline 050555ae2686fc4c4dc35428f1149d66 https://www.encodeproject.org/files/ENCFF174YEU/@@download/ENCFF174YEU.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF827HHM bed narrowPeak conservative idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF174YEU, ENCFF276JDQ, ENCFF830SNU 713752 ENCODE Processing Pipeline e17d4af166cf60dbc9c92dd7a68f94f4 https://www.encodeproject.org/files/ENCFF827HHM/@@download/ENCFF827HHM.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF930QUM bed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 immortalized cell line unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF174YEU, ENCFF276JDQ, ENCFF830SNU 736511 ENCODE Processing Pipeline bd61a515467d59a908d9e5668b3e868e https://www.encodeproject.org/files/ENCFF930QUM/@@download/ENCFF930QUM.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF828UBR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF142PDO 2637 ENCODE Processing Pipeline 832b158cdc4041222075f1d001a90fa6 https://www.encodeproject.org/files/ENCFF828UBR/@@download/ENCFF828UBR.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF142PDO bed narrowPeak peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF080WMH, ENCFF880RWA 3956703 ENCODE Processing Pipeline 41b35e5618e558377cb578e258e6e7a7 https://www.encodeproject.org/files/ENCFF142PDO/@@download/ENCFF142PDO.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF896ZBU bed narrowPeak peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF709NCT, ENCFF780OIC 4873026 ENCODE Processing Pipeline 787306b5415b7de63f6dff01e271db1b https://www.encodeproject.org/files/ENCFF896ZBU/@@download/ENCFF896ZBU.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF831BFL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF896ZBU 2480 ENCODE Processing Pipeline c8990f8ea41bc1a527e1f55ac4ec2f58 https://www.encodeproject.org/files/ENCFF831BFL/@@download/ENCFF831BFL.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF039AUA bed narrowPeak peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF058IMO, ENCFF217IBH 5495943 ENCODE Processing Pipeline 2e9d24124bd7f0dc7716b13df9dc62b5 https://www.encodeproject.org/files/ENCFF039AUA/@@download/ENCFF039AUA.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF072UWP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF039AUA, ENCFF419RSJ 390572 ENCODE Processing Pipeline d0ca9da6eb9a87268bb5fc89296303b7 https://www.encodeproject.org/files/ENCFF072UWP/@@download/ENCFF072UWP.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF320GJE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF393OKG 367758 ENCODE Processing Pipeline ab73357d00bd333a22170eb0cc48ccfe https://www.encodeproject.org/files/ENCFF320GJE/@@download/ENCFF320GJE.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF393OKG bed narrowPeak peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF049CMN, ENCFF096CSL 5438993 ENCODE Processing Pipeline fa81190887745a37f19c8594ee9faf54 https://www.encodeproject.org/files/ENCFF393OKG/@@download/ENCFF393OKG.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF741BED bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF399TIE 584548 ENCODE Processing Pipeline c6396699b537b24c35b1291ff4277b2e https://www.encodeproject.org/files/ENCFF741BED/@@download/ENCFF741BED.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF399TIE bed narrowPeak peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF230HKK, ENCFF569UCD 7083930 ENCODE Processing Pipeline c902b02fece46d7fe330c058e041f453 https://www.encodeproject.org/files/ENCFF399TIE/@@download/ENCFF399TIE.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF234VTM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF881FZQ 588747 ENCODE Processing Pipeline 3c80efe4c52d7680ca71af8bb4be9017 https://www.encodeproject.org/files/ENCFF234VTM/@@download/ENCFF234VTM.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF881FZQ bed narrowPeak peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF811KEY, ENCFF925EOE 7075138 ENCODE Processing Pipeline 2c6328caaa46d732afc8aea9e66dd939 https://www.encodeproject.org/files/ENCFF881FZQ/@@download/ENCFF881FZQ.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF316LSD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF999RRH 676194 ENCODE Processing Pipeline f2be4eb4ae95f46848a4e2084891e1bf https://www.encodeproject.org/files/ENCFF316LSD/@@download/ENCFF316LSD.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF999RRH bed narrowPeak peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF347PVY, ENCFF791LLR 6620179 ENCODE Processing Pipeline 038ec91b4e74e9a4e0334923115eabbb https://www.encodeproject.org/files/ENCFF999RRH/@@download/ENCFF999RRH.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF306LCT bed narrowPeak peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF048YPV, ENCFF512QNP 6639477 ENCODE Processing Pipeline d2b5151160070b56cb176ba5376af557 https://www.encodeproject.org/files/ENCFF306LCT/@@download/ENCFF306LCT.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF907KEJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-10-25 ENCODE 1 ENCFF306LCT, ENCFF419RSJ 674345 ENCODE Processing Pipeline e6b5bdd7d25b283393e4bb927cbcdac3 https://www.encodeproject.org/files/ENCFF907KEJ/@@download/ENCFF907KEJ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF109JXK bed narrowPeak peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-03-20 ENCODE 1 ENCFF438KPT, ENCFF580MDV 6016392 ENCODE Processing Pipeline d25413af83de49a52cf86d95f876626e https://www.encodeproject.org/files/ENCFF109JXK/@@download/ENCFF109JXK.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF202BAI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-03-20 ENCODE 1 ENCFF001TDO, ENCFF109JXK 444399 ENCODE Processing Pipeline 5eda8c78db75e4b508791a1eabaee5b1 https://www.encodeproject.org/files/ENCFF202BAI/@@download/ENCFF202BAI.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF489VAN bed narrowPeak peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-03-20 ENCODE 1 ENCFF015PXS, ENCFF080IVM 6116817 ENCODE Processing Pipeline 0041a14aecf8d01d3a8b8cebe2d07181 https://www.encodeproject.org/files/ENCFF489VAN/@@download/ENCFF489VAN.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF373DVN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-03-20 ENCODE 1 ENCFF419RSJ, ENCFF489VAN 481041 ENCODE Processing Pipeline ec7515df6646bb15fcf5c764e22038c6 https://www.encodeproject.org/files/ENCFF373DVN/@@download/ENCFF373DVN.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF039PUW bed narrowPeak peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF080TZU, ENCFF622IZB 6776523 ENCODE Processing Pipeline 7f3d79db32c87814cfd1f8f89aece011 https://www.encodeproject.org/files/ENCFF039PUW/@@download/ENCFF039PUW.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF984EZB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF039PUW 774948 ENCODE Processing Pipeline cba2a3cc5d76cd33e4db70500d735e67 https://www.encodeproject.org/files/ENCFF984EZB/@@download/ENCFF984EZB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF932CWN bed narrowPeak peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF562CIX, ENCFF894PHG 6710573 ENCODE Processing Pipeline 539ae5cd376ca4837dc1e7a9f8e34558 https://www.encodeproject.org/files/ENCFF932CWN/@@download/ENCFF932CWN.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF716XFO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF932CWN 755270 ENCODE Processing Pipeline 37396eef07b3a75d56368746b1e59ade https://www.encodeproject.org/files/ENCFF716XFO/@@download/ENCFF716XFO.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF541GTF bed narrowPeak peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF309III, ENCFF735LIV 6736752 ENCODE Processing Pipeline 9a5076239e164774b5cc1f186250afab https://www.encodeproject.org/files/ENCFF541GTF/@@download/ENCFF541GTF.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF646ODW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF541GTF 738625 ENCODE Processing Pipeline eaede68764398ab30bd3ee58592c9fc1 https://www.encodeproject.org/files/ENCFF646ODW/@@download/ENCFF646ODW.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF383YWV bed narrowPeak peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF129ZFR, ENCFF809BGD 6785669 ENCODE Processing Pipeline d91d3940ff723bf1695effd8605f7f46 https://www.encodeproject.org/files/ENCFF383YWV/@@download/ENCFF383YWV.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF611MLV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF383YWV, ENCFF419RSJ 751797 ENCODE Processing Pipeline 39b67268eb7ebb3aa24619eeb5b8c0d5 https://www.encodeproject.org/files/ENCFF611MLV/@@download/ENCFF611MLV.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF938NIP bed narrowPeak peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF288DHW, ENCFF894GZN 6788148 ENCODE Processing Pipeline 881e4ad73aa8cb3ea20276d0f000d439 https://www.encodeproject.org/files/ENCFF938NIP/@@download/ENCFF938NIP.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF745NPN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF938NIP 632658 ENCODE Processing Pipeline 1e585522f7ce87aeaa678e4b75bb8aa3 https://www.encodeproject.org/files/ENCFF745NPN/@@download/ENCFF745NPN.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF846IMW bed narrowPeak peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF219XWI, ENCFF957DAV 6823040 ENCODE Processing Pipeline b4cf7701a13ea21fd6cc0b91d6d8f4d5 https://www.encodeproject.org/files/ENCFF846IMW/@@download/ENCFF846IMW.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF869YGK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF846IMW 635377 ENCODE Processing Pipeline 507d11142275c2f66db371b8d56907c5 https://www.encodeproject.org/files/ENCFF869YGK/@@download/ENCFF869YGK.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF002CEF bed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 962316 ENCODE Consortium Analysis Working Group f40df1c037735f92207b24ec5333b3db https://www.encodeproject.org/files/ENCFF002CEF/@@download/ENCFF002CEF.bed.gz hg19 archived moderate library complexity, low read depth, mild to moderate bottlenecking, low read length missing derived_from insufficient read depth ENCFF910ILP bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1 ENCFF275OTT 3341754 ENCODE Processing Pipeline 33ecf88544a0b0251246ad62bb9598d0 https://www.encodeproject.org/files/ENCFF910ILP/@@download/ENCFF910ILP.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF561XEB bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 2 ENCFF408DZP 4989808 ENCODE Processing Pipeline 7e20029551d9f317fed154619a5a5537 https://www.encodeproject.org/files/ENCFF561XEB/@@download/ENCFF561XEB.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF069WWW bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF275OTT, ENCFF408DZP 5592366 ENCODE Processing Pipeline 8171adc42280d2b9c038d62c723ce126 https://www.encodeproject.org/files/ENCFF069WWW/@@download/ENCFF069WWW.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF004UUL bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1 ENCFF276SUL, ENCFF559IIB, ENCFF900ZEG 3342896 ENCODE Processing Pipeline bad9ba2a20281ae90ef47badcf4affeb https://www.encodeproject.org/files/ENCFF004UUL/@@download/ENCFF004UUL.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF752POC bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 2 ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 5034659 ENCODE Processing Pipeline d8b4df92f482063a8f062a353f3e89b0 https://www.encodeproject.org/files/ENCFF752POC/@@download/ENCFF752POC.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF315KYG bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF276SUL, ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 5567043 ENCODE Processing Pipeline 9e8de4dce5f1fff29869b85c85466c37 https://www.encodeproject.org/files/ENCFF315KYG/@@download/ENCFF315KYG.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF448MBM bed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF004UUL, ENCFF315KYG, ENCFF752POC 727915 ENCODE Processing Pipeline 159eaf588d42788b8035074162a5131a https://www.encodeproject.org/files/ENCFF448MBM/@@download/ENCFF448MBM.bed.gz hg19 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF719TNH bed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells adult male 22 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF069WWW, ENCFF419RSJ, ENCFF561XEB, ENCFF910ILP 728700 ENCODE Processing Pipeline fab71761215ccbfaf37b999af00cda28 https://www.encodeproject.org/files/ENCFF719TNH/@@download/ENCFF719TNH.bed.gz GRCh38 released moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF385FXV bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1 ENCFF075YNC, ENCFF746KIU, ENCFF865NTT 2538198 ENCODE Processing Pipeline 506e5584e0bd676a0e1e18d05eb58156 https://www.encodeproject.org/files/ENCFF385FXV/@@download/ENCFF385FXV.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF409FXR bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 2 ENCFF075YNC, ENCFF765PTU, ENCFF865NTT 5652730 ENCODE Processing Pipeline 36907687741235c85ca54dd2677db440 https://www.encodeproject.org/files/ENCFF409FXR/@@download/ENCFF409FXR.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF179QLF bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF075YNC, ENCFF746KIU, ENCFF765PTU, ENCFF865NTT 5687576 ENCODE Processing Pipeline 21d7da3a5b95a910f9cf59d9d69aaf36 https://www.encodeproject.org/files/ENCFF179QLF/@@download/ENCFF179QLF.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF873NGI bed narrowPeak conservative idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF179QLF, ENCFF385FXV, ENCFF409FXR, ENCFF419RSJ 682402 ENCODE Processing Pipeline ee60e560def610cd66baa447e15c5a41 https://www.encodeproject.org/files/ENCFF873NGI/@@download/ENCFF873NGI.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF300XXC bed narrowPeak optimal idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF179QLF, ENCFF385FXV, ENCFF409FXR, ENCFF419RSJ 694416 ENCODE Processing Pipeline 68d359de96cf841f4543cb9d74d2ef73 https://www.encodeproject.org/files/ENCFF300XXC/@@download/ENCFF300XXC.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF446PEN bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 5726924 ENCODE Processing Pipeline 186a79d3ab86c69cde946fc66ebb1e51 https://www.encodeproject.org/files/ENCFF446PEN/@@download/ENCFF446PEN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF097DFJ bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1 ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 2633014 ENCODE Processing Pipeline ac010eb0b01e37f4288fdbe332b30fa6 https://www.encodeproject.org/files/ENCFF097DFJ/@@download/ENCFF097DFJ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF920STO bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS 5595559 ENCODE Processing Pipeline aa22a83230d12c3c1501bbe6b932b482 https://www.encodeproject.org/files/ENCFF920STO/@@download/ENCFF920STO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF920JJP bed narrowPeak conservative idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF097DFJ, ENCFF446PEN, ENCFF920STO 685912 ENCODE Processing Pipeline 7e3354e6f84df1c5835d486de8be7b53 https://www.encodeproject.org/files/ENCFF920JJP/@@download/ENCFF920JJP.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF437LHG bed narrowPeak optimal idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF097DFJ, ENCFF446PEN, ENCFF920STO 692739 ENCODE Processing Pipeline d352e31174798d828b982e6429bbb48e https://www.encodeproject.org/files/ENCFF437LHG/@@download/ENCFF437LHG.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XMT bed narrowPeak peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZL 839053 John Stamatoyannopoulos, UW 8f1e2b7c669be0b177311aa1ac6fe8d3 https://www.encodeproject.org/files/ENCFF001XMT/@@download/ENCFF001XMT.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF001XMU bed narrowPeak peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GZP 692623 John Stamatoyannopoulos, UW baaf1db2fcd53395f86ae116ecc0d17b https://www.encodeproject.org/files/ENCFF001XMU/@@download/ENCFF001XMU.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF002DCC bed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GZL, ENCFF001GZP 877867 ENCODE Consortium Analysis Working Group bb97df8c169ee43a57c4f9c008ecac67 https://www.encodeproject.org/files/ENCFF002DCC/@@download/ENCFF002DCC.bed.gz hg19 archived inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF211RYT bed narrowPeak peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF152LFC, ENCFF517WZK 2712210 ENCODE Processing Pipeline 09cf0f93381c3b30c5d6efa77dbf244d https://www.encodeproject.org/files/ENCFF211RYT/@@download/ENCFF211RYT.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF774IIX bed narrowPeak conservative idr thresholded peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF211RYT, ENCFF341LZM, ENCFF419RSJ, ENCFF932GTN 709871 ENCODE Processing Pipeline f0764fa23bf943caf7fd900046488357 https://www.encodeproject.org/files/ENCFF774IIX/@@download/ENCFF774IIX.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF932GTN bed narrowPeak peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF517WZK, ENCFF971SCT 3946717 ENCODE Processing Pipeline 68f5d84eb9713f0e951b0898aaf5e4cb https://www.encodeproject.org/files/ENCFF932GTN/@@download/ENCFF932GTN.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF341LZM bed narrowPeak peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF152LFC, ENCFF517WZK, ENCFF971SCT 4525710 ENCODE Processing Pipeline c2cdf2d4c1dccbc25bc38d31a16ac408 https://www.encodeproject.org/files/ENCFF341LZM/@@download/ENCFF341LZM.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF704JHR bed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF211RYT, ENCFF341LZM, ENCFF419RSJ, ENCFF932GTN 747632 ENCODE Processing Pipeline ebba622031840efe430e67f4b98fd2f2 https://www.encodeproject.org/files/ENCFF704JHR/@@download/ENCFF704JHR.bed.gz GRCh38 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF829XOU bed narrowPeak peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF217JMI, ENCFF706WFS, ENCFF767ZGM 4512426 ENCODE Processing Pipeline 430d57d6a7a81a93a96f9ca7a5f5ecf2 https://www.encodeproject.org/files/ENCFF829XOU/@@download/ENCFF829XOU.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF493VQC bed narrowPeak peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF217JMI, ENCFF706WFS 3972671 ENCODE Processing Pipeline 334898a666f4ce14ce56d36b98258185 https://www.encodeproject.org/files/ENCFF493VQC/@@download/ENCFF493VQC.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF649IRT bed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF493VQC, ENCFF777VSN, ENCFF829XOU 747549 ENCODE Processing Pipeline cff73f0abc942e1a9b0fc2c314cef00e https://www.encodeproject.org/files/ENCFF649IRT/@@download/ENCFF649IRT.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF777VSN bed narrowPeak peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF706WFS, ENCFF767ZGM 2672218 ENCODE Processing Pipeline 27fe350d5804c3efdc4c6767efabe4b2 https://www.encodeproject.org/files/ENCFF777VSN/@@download/ENCFF777VSN.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF793LQM bed narrowPeak conservative idr thresholded peaks ENCSR000DQI ChIP-seq CL:1001608 foreskin fibroblast primary cell newborn male unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF493VQC, ENCFF777VSN, ENCFF829XOU 707447 ENCODE Processing Pipeline 73605bedfda8d8462bddf7ee36253022 https://www.encodeproject.org/files/ENCFF793LQM/@@download/ENCFF793LQM.bed.gz hg19 released inconsistent platforms, low read depth, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth ENCFF005FQK bed narrowPeak peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 2 ENCFF304JLC, ENCFF940ZHR 6751907 ENCODE Processing Pipeline 75e5a27a47da2d88059b6c23b5480bc1 https://www.encodeproject.org/files/ENCFF005FQK/@@download/ENCFF005FQK.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF407FUL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 2 ENCFF001TDO, ENCFF005FQK 673336 ENCODE Processing Pipeline 0ba02b2ab90945696243b29146e01e5d https://www.encodeproject.org/files/ENCFF407FUL/@@download/ENCFF407FUL.bed.gz hg19 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF071RNS bed narrowPeak peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 2 ENCFF874SPI, ENCFF987CPP 6786226 ENCODE Processing Pipeline 80c80eaa5ab61ffda5a8992c84ac1cab https://www.encodeproject.org/files/ENCFF071RNS/@@download/ENCFF071RNS.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF237VLQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue adult male 37 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 2 ENCFF071RNS, ENCFF419RSJ 686437 ENCODE Processing Pipeline 5ff575b79d4899888f3ae4d504de5e60 https://www.encodeproject.org/files/ENCFF237VLQ/@@download/ENCFF237VLQ.bed.gz GRCh38 released antibody characterized with exemption, low read depth, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF728JUW bed narrowPeak peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF541AWB, ENCFF856ESK 5692158 ENCODE Processing Pipeline 2be009be9c312bb21aba7458718b3fca https://www.encodeproject.org/files/ENCFF728JUW/@@download/ENCFF728JUW.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF517HGL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF728JUW 227897 ENCODE Processing Pipeline 9cd4eefff7f666ff7a3c7b4cf15d919f https://www.encodeproject.org/files/ENCFF517HGL/@@download/ENCFF517HGL.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF217FNA bed narrowPeak peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF034TFU, ENCFF575CYL 5693037 ENCODE Processing Pipeline 8c6eb9860ae6968449159696817a617e https://www.encodeproject.org/files/ENCFF217FNA/@@download/ENCFF217FNA.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF668UDC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue adult female 51 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF217FNA, ENCFF419RSJ 222591 ENCODE Processing Pipeline f040fa5e357289b4028a0b7cf32a08b1 https://www.encodeproject.org/files/ENCFF668UDC/@@download/ENCFF668UDC.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF230HWI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF246HSO 285101 ENCODE Processing Pipeline d81233d03fbdee0425933ede6e8ca42b https://www.encodeproject.org/files/ENCFF230HWI/@@download/ENCFF230HWI.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status ENCFF246HSO bed narrowPeak peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF034SMD, ENCFF106RXX 6662756 ENCODE Processing Pipeline 75914ddd368c4257b7d42101e337ff94 https://www.encodeproject.org/files/ENCFF246HSO/@@download/ENCFF246HSO.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status ENCFF637OOY bed narrowPeak peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF278DTC, ENCFF467EPK 6665880 ENCODE Processing Pipeline 14e0d31426bf6097a380272c8d330cc2 https://www.encodeproject.org/files/ENCFF637OOY/@@download/ENCFF637OOY.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status ENCFF615AFS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF637OOY 285010 ENCODE Processing Pipeline b67aa9433ef56b2dd8c8a4ad359b1b35 https://www.encodeproject.org/files/ENCFF615AFS/@@download/ENCFF615AFS.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO, mismatched status ENCFF560VSK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF108QPP 402112 ENCODE Processing Pipeline 7bd9d87f2254c348fb113f4f8fdba4c4 https://www.encodeproject.org/files/ENCFF560VSK/@@download/ENCFF560VSK.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF108QPP bed narrowPeak peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF209DDU, ENCFF753TRQ 5531553 ENCODE Processing Pipeline fef8b2498bbc711a8215c421eb56bea4 https://www.encodeproject.org/files/ENCFF108QPP/@@download/ENCFF108QPP.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF220VAH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF828ASK 407068 ENCODE Processing Pipeline cee8675be16e200f520046bd27e12d98 https://www.encodeproject.org/files/ENCFF220VAH/@@download/ENCFF220VAH.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF828ASK bed narrowPeak peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-11 ENCODE 1 ENCFF374OTR, ENCFF987UNO 5557994 ENCODE Processing Pipeline 7e162cfad5ea93c3d749d325d0f49a67 https://www.encodeproject.org/files/ENCFF828ASK/@@download/ENCFF828ASK.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, missing unfiltered alignments ENCFF104VHX bed narrowPeak peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF262AKB, ENCFF751PAR 6703589 ENCODE Processing Pipeline 39a6843c915a672793f7e5e5bb96a704 https://www.encodeproject.org/files/ENCFF104VHX/@@download/ENCFF104VHX.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF781EZZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF104VHX 500178 ENCODE Processing Pipeline 44409b3a2e915e325f4725ef8190ca9b https://www.encodeproject.org/files/ENCFF781EZZ/@@download/ENCFF781EZZ.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF343RNG bed narrowPeak peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF170EHY, ENCFF519AHQ 6688566 ENCODE Processing Pipeline a75f8d5dc261292b1ce154a40a8caa6a https://www.encodeproject.org/files/ENCFF343RNG/@@download/ENCFF343RNG.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF254NYT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-08 ENCODE 1 ENCFF343RNG, ENCFF419RSJ 499702 ENCODE Processing Pipeline 873c61ac0676e9c0d350939f78364973 https://www.encodeproject.org/files/ENCFF254NYT/@@download/ENCFF254NYT.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF032KSH bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF320FQJ, ENCFF518OUM 7028649 ENCODE Processing Pipeline ab4b197141ca1092321e093a44751d65 https://www.encodeproject.org/files/ENCFF032KSH/@@download/ENCFF032KSH.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF439SKM bed narrowPeak conservative idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF032KSH, ENCFF255EDE, ENCFF563CXH 1156687 ENCODE Processing Pipeline 0275cbaa6e8f7e2e11bcdd1ad78b78af https://www.encodeproject.org/files/ENCFF439SKM/@@download/ENCFF439SKM.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF255EDE bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF393CEV, ENCFF938FXZ 7008257 ENCODE Processing Pipeline 5b9c43e51c405a24c14ff682f59f7664 https://www.encodeproject.org/files/ENCFF255EDE/@@download/ENCFF255EDE.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF563CXH bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF320FQJ, ENCFF393CEV, ENCFF518OUM, ENCFF938FXZ 7496071 ENCODE Processing Pipeline 78f0dfd206e52aee65058bb5945119be https://www.encodeproject.org/files/ENCFF563CXH/@@download/ENCFF563CXH.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF450CNK bed narrowPeak optimal idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF032KSH, ENCFF255EDE, ENCFF563CXH 1438655 ENCODE Processing Pipeline 2c3f3e32ca1959fa2952b084fb115bed https://www.encodeproject.org/files/ENCFF450CNK/@@download/ENCFF450CNK.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF826DQF bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 2 ENCFF365CNT, ENCFF368HMQ 7038661 ENCODE Processing Pipeline f51a8d97823a74aead155fa62d9e205c https://www.encodeproject.org/files/ENCFF826DQF/@@download/ENCFF826DQF.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF753HNR bed narrowPeak optimal idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF817BQI, ENCFF826DQF, ENCFF849YMG 1451583 ENCODE Processing Pipeline 99609b7546ae0958672dd056439bb13a https://www.encodeproject.org/files/ENCFF753HNR/@@download/ENCFF753HNR.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF849YMG bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 1 ENCFF433NFZ, ENCFF683TLX 7016592 ENCODE Processing Pipeline e8b4f2fd3f5c66de250865cd39adee4d https://www.encodeproject.org/files/ENCFF849YMG/@@download/ENCFF849YMG.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF817BQI bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF365CNT, ENCFF368HMQ, ENCFF433NFZ, ENCFF683TLX 7504415 ENCODE Processing Pipeline cfb8d99e4baa718e17fcb49b6a5d1caa https://www.encodeproject.org/files/ENCFF817BQI/@@download/ENCFF817BQI.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF349TOJ bed narrowPeak conservative idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 immortalized cell line unknown male 56 year Homo sapiens CTCF-human ENCAB247TYO, ENCAB498PCM DNA False 2017-07-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF817BQI, ENCFF826DQF, ENCFF849YMG 1160666 ENCODE Processing Pipeline 482759c647a28c23e71d2aa52a60901e https://www.encodeproject.org/files/ENCFF349TOJ/@@download/ENCFF349TOJ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO, NTR biosample ENCFF001XRR bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HPN 730930 John Stamatoyannopoulos, UW bb19ea2d1c5d3eb8f361cfed950e06e3 https://www.encodeproject.org/files/ENCFF001XRR/@@download/ENCFF001XRR.bed.gz hg19 archived inconsistent platforms, low read depth, low read length insufficient read depth ENCFF001XRS bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HPS 914710 John Stamatoyannopoulos, UW e4941c4dd7c4f1b48e64f78b287a894a https://www.encodeproject.org/files/ENCFF001XRS/@@download/ENCFF001XRS.bed.gz hg19 archived inconsistent platforms, low read depth, low read length insufficient read depth ENCFF002DDC bed narrowPeak optimal idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HPN, ENCFF001HPS 1096364 ENCODE Consortium Analysis Working Group e8eaeec69dc33f8f1e7163092af40675 https://www.encodeproject.org/files/ENCFF002DDC/@@download/ENCFF002DDC.bed.gz hg19 archived inconsistent platforms, low read depth, low read length insufficient read depth ENCFF836OOE bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF149SVY, ENCFF161AGR, ENCFF272GNJ 4176140 ENCODE Processing Pipeline 9d63b29202b0ebf897af34d5880df505 https://www.encodeproject.org/files/ENCFF836OOE/@@download/ENCFF836OOE.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF196CRQ bed narrowPeak optimal idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF152YHL, ENCFF257JPC, ENCFF419RSJ, ENCFF836OOE 813731 ENCODE Processing Pipeline be72a186db2ef29ae0d6056208f1a60a https://www.encodeproject.org/files/ENCFF196CRQ/@@download/ENCFF196CRQ.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF257JPC bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF149SVY, ENCFF272GNJ 2379656 ENCODE Processing Pipeline 6a2d4c5871c2d47b2271fbf3caed2d33 https://www.encodeproject.org/files/ENCFF257JPC/@@download/ENCFF257JPC.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF152YHL bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF161AGR, ENCFF272GNJ 3861784 ENCODE Processing Pipeline cdac5202649dd8df8f7774cd6662e986 https://www.encodeproject.org/files/ENCFF152YHL/@@download/ENCFF152YHL.bed.gz GRCh38 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF090XCI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF318TMO, ENCFF628PKL 2393589 ENCODE Processing Pipeline 1e2e1827152f9524fa34f6dc40eb8e63 https://www.encodeproject.org/files/ENCFF090XCI/@@download/ENCFF090XCI.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF681HOI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF393HXD, ENCFF628PKL 3876040 ENCODE Processing Pipeline 37fe4fb77504747cd446d054bac925cf https://www.encodeproject.org/files/ENCFF681HOI/@@download/ENCFF681HOI.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF438XHB bed narrowPeak conservative idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF090XCI, ENCFF681HOI, ENCFF831MNI 812710 ENCODE Processing Pipeline f427a82e1ac58a95b8ba78e63a5fed5b https://www.encodeproject.org/files/ENCFF438XHB/@@download/ENCFF438XHB.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF831MNI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell unknown female unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF318TMO, ENCFF393HXD, ENCFF628PKL 4178221 ENCODE Processing Pipeline e767ee20d668de50b9578fdb608dae86 https://www.encodeproject.org/files/ENCFF831MNI/@@download/ENCFF831MNI.bed.gz hg19 released inconsistent platforms, low read depth, low read length insufficient read depth ENCFF833TSX bed narrowPeak peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF334HAL, ENCFF899IHZ 6509134 ENCODE Processing Pipeline e3812333d1f49ced5c48f4d37d476541 https://www.encodeproject.org/files/ENCFF833TSX/@@download/ENCFF833TSX.bed.gz hg19 released antibody characterized with exemption, low read depth experiment not submitted to GEO ENCFF384ALJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF833TSX 682910 ENCODE Processing Pipeline 32060bc34be711141392c9bd81ed44cf https://www.encodeproject.org/files/ENCFF384ALJ/@@download/ENCFF384ALJ.bed.gz hg19 released antibody characterized with exemption, low read depth experiment not submitted to GEO ENCFF509RCR bed narrowPeak peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF209HOO, ENCFF867AMO 6571583 ENCODE Processing Pipeline 0f2c8944b869d2a56902c50453b99045 https://www.encodeproject.org/files/ENCFF509RCR/@@download/ENCFF509RCR.bed.gz GRCh38 released antibody characterized with exemption, low read depth experiment not submitted to GEO ENCFF989JUA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF509RCR 695614 ENCODE Processing Pipeline dc90d52742ee19589d8c6345cad790a7 https://www.encodeproject.org/files/ENCFF989JUA/@@download/ENCFF989JUA.bed.gz GRCh38 released antibody characterized with exemption, low read depth experiment not submitted to GEO ENCFF002CEY bed narrowPeak optimal idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1034559 ENCODE Consortium Analysis Working Group fbd1f02fde4cb1b1657d6375f4c28974 https://www.encodeproject.org/files/ENCFF002CEY/@@download/ENCFF002CEY.bed.gz hg19 archived inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length mismatched file status, missing derived_from insufficient read depth, severe bottlenecking ENCFF526IXJ bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1 ENCFF623PRW 2394466 ENCODE Processing Pipeline 4d9a3381ae4459656f13ab0250772dd3 https://www.encodeproject.org/files/ENCFF526IXJ/@@download/ENCFF526IXJ.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length mismatched file status insufficient read depth, severe bottlenecking ENCFF102DCN bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 2 ENCFF977USM 4374133 ENCODE Processing Pipeline f411d6e8c5f50e6e5f3b13a51f2935ed https://www.encodeproject.org/files/ENCFF102DCN/@@download/ENCFF102DCN.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length mismatched file status insufficient read depth, severe bottlenecking ENCFF749JKL bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF623PRW, ENCFF977USM 4231100 ENCODE Processing Pipeline 742c89f51b0bb234d9d35767ac8e1f99 https://www.encodeproject.org/files/ENCFF749JKL/@@download/ENCFF749JKL.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length mismatched file status insufficient read depth, severe bottlenecking ENCFF825LUV bed narrowPeak conservative idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF102DCN, ENCFF419RSJ, ENCFF526IXJ, ENCFF749JKL 731972 ENCODE Processing Pipeline 39f8ce8939e57aa69438745a09fc8b81 https://www.encodeproject.org/files/ENCFF825LUV/@@download/ENCFF825LUV.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length mismatched file status insufficient read depth, severe bottlenecking ENCFF798RFA bed narrowPeak optimal idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF102DCN, ENCFF419RSJ, ENCFF526IXJ, ENCFF749JKL 799189 ENCODE Processing Pipeline f610b9fc10b57facbe497470b6cfd0da https://www.encodeproject.org/files/ENCFF798RFA/@@download/ENCFF798RFA.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length mismatched file status insufficient read depth, severe bottlenecking ENCFF101PDP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-01 ENCODE 2 ENCFF001TDO, ENCFF693ETV 396511 ENCODE Processing Pipeline 3e321488d5af15c415b932c9c969b2e1 https://www.encodeproject.org/files/ENCFF101PDP/@@download/ENCFF101PDP.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF693ETV bed narrowPeak peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-01 ENCODE 2 ENCFF004MGP, ENCFF950BSF 5946564 ENCODE Processing Pipeline 8eeb8e9ed18535d626ef61e81c346fd9 https://www.encodeproject.org/files/ENCFF693ETV/@@download/ENCFF693ETV.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF281XHU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-01 ENCODE 2 ENCFF419RSJ, ENCFF587UBP 386519 ENCODE Processing Pipeline 4e43fd7d51aeed90b1add774ad1c2f6a https://www.encodeproject.org/files/ENCFF281XHU/@@download/ENCFF281XHU.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF587UBP bed narrowPeak peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-02-01 ENCODE 2 ENCFF364HTM, ENCFF863CTX 5913190 ENCODE Processing Pipeline 137f47cddc0ad49dee3fc48d2e297f5c https://www.encodeproject.org/files/ENCFF587UBP/@@download/ENCFF587UBP.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001XMX bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZV 846025 John Stamatoyannopoulos, UW 945c5c42b7eed394da0967d381ec73ec https://www.encodeproject.org/files/ENCFF001XMX/@@download/ENCFF001XMX.bed.gz hg19 archived inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF001XMY bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAC 766079 John Stamatoyannopoulos, UW 642d32758871ebed798792c9a8f867fb https://www.encodeproject.org/files/ENCFF001XMY/@@download/ENCFF001XMY.bed.gz hg19 archived inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF002DCD bed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GZV, ENCFF001HAC 955846 ENCODE Consortium Analysis Working Group 2b14a190e67d2dffff232a8955932ef7 https://www.encodeproject.org/files/ENCFF002DCD/@@download/ENCFF002DCD.bed.gz hg19 archived inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF990ZZT bed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF326KOS, ENCFF411SQU, ENCFF419RSJ, ENCFF912COX 745994 ENCODE Processing Pipeline c42c86eb94bae94b98236b240447bc21 https://www.encodeproject.org/files/ENCFF990ZZT/@@download/ENCFF990ZZT.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF179QAX bed narrowPeak conservative idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF326KOS, ENCFF411SQU, ENCFF419RSJ, ENCFF912COX 689366 ENCODE Processing Pipeline 1ac6d0bda7b2b55daa560607f2064dba https://www.encodeproject.org/files/ENCFF179QAX/@@download/ENCFF179QAX.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF326KOS bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF761FZT, ENCFF851MPE 3528620 ENCODE Processing Pipeline 3388a9b76fcbd7418f5683d213a46368 https://www.encodeproject.org/files/ENCFF326KOS/@@download/ENCFF326KOS.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF912COX bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF628ZLC, ENCFF851MPE 3805041 ENCODE Processing Pipeline e520506ddb1adec80ca1298016964107 https://www.encodeproject.org/files/ENCFF912COX/@@download/ENCFF912COX.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF411SQU bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF628ZLC, ENCFF761FZT, ENCFF851MPE 4157836 ENCODE Processing Pipeline 842d84cb6a5e4091c22ac391ffdb31a0 https://www.encodeproject.org/files/ENCFF411SQU/@@download/ENCFF411SQU.bed.gz GRCh38 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF450FYB bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF054SRM, ENCFF610PHZ 3540401 ENCODE Processing Pipeline a6f63c9f563d046e48146a95d85ce651 https://www.encodeproject.org/files/ENCFF450FYB/@@download/ENCFF450FYB.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF504EWS bed narrowPeak conservative idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF146XLM, ENCFF450FYB, ENCFF532LQQ 692123 ENCODE Processing Pipeline f8987f07ffba71095281c33f52562898 https://www.encodeproject.org/files/ENCFF504EWS/@@download/ENCFF504EWS.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF532LQQ bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF364PXD, ENCFF610PHZ 3817285 ENCODE Processing Pipeline a0b5b1b9b91a6d0b9a4a0f52496581c7 https://www.encodeproject.org/files/ENCFF532LQQ/@@download/ENCFF532LQQ.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF146XLM bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF054SRM, ENCFF364PXD, ENCFF610PHZ 4174681 ENCODE Processing Pipeline 9464adaeb43e86e33b9bbc9baf335608 https://www.encodeproject.org/files/ENCFF146XLM/@@download/ENCFF146XLM.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF882YQH bed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 immortalized cell line adult male 72 year Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF146XLM, ENCFF450FYB, ENCFF532LQQ 759010 ENCODE Processing Pipeline 7251e79d7216a84cc06fd9967db74d19 https://www.encodeproject.org/files/ENCFF882YQH/@@download/ENCFF882YQH.bed.gz hg19 released inconsistent platforms, moderate library complexity, low read depth, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF001XTQ bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HWO 764075 John Stamatoyannopoulos, UW 5477edaaa4ae7c17ab6288a99066c007 https://www.encodeproject.org/files/ENCFF001XTQ/@@download/ENCFF001XTQ.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF001XTS bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HWP 859303 John Stamatoyannopoulos, UW 772bfb88e8cf6aad3cae3467a73f969d https://www.encodeproject.org/files/ENCFF001XTS/@@download/ENCFF001XTS.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF002DDQ bed narrowPeak optimal idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HWO, ENCFF001HWP 837045 ENCODE Consortium Analysis Working Group b5b6873cc98fdcb33c369f06cb4ce76b https://www.encodeproject.org/files/ENCFF002DDQ/@@download/ENCFF002DDQ.bed.gz hg19 archived inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF821CAK bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF727MWW, ENCFF863LNN, ENCFF902PDL 3846590 ENCODE Processing Pipeline 6fe1011ed9b997055bf0b27e0134f76b https://www.encodeproject.org/files/ENCFF821CAK/@@download/ENCFF821CAK.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF833LSO bed narrowPeak conservative idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF116ONS, ENCFF453SOO, ENCFF821CAK 683562 ENCODE Processing Pipeline f9c78cd5160c32aa7f2640e99b8ac86e https://www.encodeproject.org/files/ENCFF833LSO/@@download/ENCFF833LSO.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF453SOO bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF727MWW, ENCFF863LNN 1882219 ENCODE Processing Pipeline 9c8669e6872848a21b9b0c96662e1955 https://www.encodeproject.org/files/ENCFF453SOO/@@download/ENCFF453SOO.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF401ONY bed narrowPeak optimal idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF116ONS, ENCFF453SOO, ENCFF821CAK 707859 ENCODE Processing Pipeline bd9ebf6bcf664839e8f8464a465ebea0 https://www.encodeproject.org/files/ENCFF401ONY/@@download/ENCFF401ONY.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF116ONS bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell unknown unknown unknown Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF727MWW, ENCFF902PDL 2413791 ENCODE Processing Pipeline 4f2cc4f0d15588e8ef5b158611ddeea3 https://www.encodeproject.org/files/ENCFF116ONS/@@download/ENCFF116ONS.bed.gz hg19 released inconsistent platforms, moderate library complexity, mild to moderate bottlenecking, low read length insufficient read depth, severe bottlenecking ENCFF407AVQ bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-01-12 ENCODE 1 ENCFF624TDL, ENCFF754MHP, ENCFF832PWH 6331374 ENCODE Processing Pipeline 2192572c25185115a03da81a49056dcc https://www.encodeproject.org/files/ENCFF407AVQ/@@download/ENCFF407AVQ.bed.gz GRCh38 released mixed run types, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF032DEW bed narrowPeak conservative idr thresholded peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-01-12 ENCODE 1, 2 ENCFF001TDO, ENCFF227KPY, ENCFF399PZK, ENCFF524ADR 1077256 ENCODE Processing Pipeline 2af95dd3b3a987bf9d9c29d4340c0e5b https://www.encodeproject.org/files/ENCFF032DEW/@@download/ENCFF032DEW.bed.gz hg19 released mixed run types, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF067GVZ bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-01-12 ENCODE 1, 2 ENCFF160MJQ, ENCFF624TDL, ENCFF754MHP, ENCFF832PWH 7039156 ENCODE Processing Pipeline c973e25a4b6ab447e779730c6aa72de4 https://www.encodeproject.org/files/ENCFF067GVZ/@@download/ENCFF067GVZ.bed.gz GRCh38 released mixed run types, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF227KPY bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-01-12 ENCODE 1 ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 6427945 ENCODE Processing Pipeline be3dae88aff168362e1ea5418de02669 https://www.encodeproject.org/files/ENCFF227KPY/@@download/ENCFF227KPY.bed.gz hg19 released mixed run types, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF920OTP bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-01-12 ENCODE 2 ENCFF160MJQ, ENCFF754MHP, ENCFF832PWH 6812357 ENCODE Processing Pipeline 976e55815f02f0044611871a31ed7fa7 https://www.encodeproject.org/files/ENCFF920OTP/@@download/ENCFF920OTP.bed.gz GRCh38 released mixed run types, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF616KNI bed narrowPeak optimal idr thresholded peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-01-12 ENCODE 1, 2 ENCFF067GVZ, ENCFF407AVQ, ENCFF419RSJ, ENCFF920OTP 1080844 ENCODE Processing Pipeline f183ac930c3b377b88287518294e6d63 https://www.encodeproject.org/files/ENCFF616KNI/@@download/ENCFF616KNI.bed.gz GRCh38 released mixed run types, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF524ADR bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-01-12 ENCODE 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ 6900017 ENCODE Processing Pipeline fe9024e9b222cd67f905db8441a16dc3 https://www.encodeproject.org/files/ENCFF524ADR/@@download/ENCFF524ADR.bed.gz hg19 released mixed run types, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF399PZK bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 immortalized cell line unknown unknown unknown Homo sapiens CTCF-human ENCAB000AXX DNA False 2017-01-12 ENCODE 1, 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 7035060 ENCODE Processing Pipeline 899d67bf2a186b1e1c4307c7366fdb12 https://www.encodeproject.org/files/ENCFF399PZK/@@download/ENCFF399PZK.bed.gz hg19 released mixed run types, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF398VGB bed narrowPeak peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF446KCO, ENCFF667NBG 6453063 ENCODE Processing Pipeline a7c0fedf24ba4507e174641879f1a881 https://www.encodeproject.org/files/ENCFF398VGB/@@download/ENCFF398VGB.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF401DFB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF398VGB 491150 ENCODE Processing Pipeline f2d354244aac6561aaf810112b904fe9 https://www.encodeproject.org/files/ENCFF401DFB/@@download/ENCFF401DFB.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF555BRJ bed narrowPeak peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF686NWU, ENCFF797ERZ 6459146 ENCODE Processing Pipeline 3c1ea78b7c391137d6087e2d8462c0b1 https://www.encodeproject.org/files/ENCFF555BRJ/@@download/ENCFF555BRJ.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF026ZWL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF555BRJ 486155 ENCODE Processing Pipeline fd432cfc247ed205e9108572ec4479cb https://www.encodeproject.org/files/ENCFF026ZWL/@@download/ENCFF026ZWL.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF251IXD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-08 ENCODE 1 ENCFF001TDO, ENCFF618NMD 557584 ENCODE Processing Pipeline e9d98a6b9e9199c4a09277e57142c981 https://www.encodeproject.org/files/ENCFF251IXD/@@download/ENCFF251IXD.bed.gz hg19 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF618NMD bed narrowPeak peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-08 ENCODE 1 ENCFF267XAF, ENCFF972JKW 5609470 ENCODE Processing Pipeline 749bb05ad9a11d370a9568a6d71ca03a https://www.encodeproject.org/files/ENCFF618NMD/@@download/ENCFF618NMD.bed.gz hg19 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF616QVQ bed narrowPeak peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-08 ENCODE 1 ENCFF046ZDT, ENCFF418LUT 5695864 ENCODE Processing Pipeline a38546da6be34d5791809e2ec382db5a https://www.encodeproject.org/files/ENCFF616QVQ/@@download/ENCFF616QVQ.bed.gz GRCh38 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF607VAP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-07-08 ENCODE 1 ENCFF419RSJ, ENCFF616QVQ 590648 ENCODE Processing Pipeline 176f9881f51a368d8940388b458249fe https://www.encodeproject.org/files/ENCFF607VAP/@@download/ENCFF607VAP.bed.gz GRCh38 released antibody characterized with exemption, low read depth experiment not submitted to GEO, missing unfiltered alignments ENCFF485ZSI bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell adult female 27 year, 43 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF520GVQ 5468945 ENCODE Processing Pipeline e8a1f5c43574d77028d65bead41854c9 https://www.encodeproject.org/files/ENCFF485ZSI/@@download/ENCFF485ZSI.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF603MIK bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell adult female 27 year, 43 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 2 ENCFF157DVB, ENCFF248YTS 5314419 ENCODE Processing Pipeline ee5a355f368bb1f332b14bf6fe358d49 https://www.encodeproject.org/files/ENCFF603MIK/@@download/ENCFF603MIK.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF209GQK bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell adult female 27 year, 43 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF157DVB, ENCFF248YTS, ENCFF520GVQ 5958213 ENCODE Processing Pipeline c232d4bdab08b6e453bb224225971cec https://www.encodeproject.org/files/ENCFF209GQK/@@download/ENCFF209GQK.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF449NOT bed narrowPeak conservative idr thresholded peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell adult female 27 year, 43 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF209GQK, ENCFF485ZSI, ENCFF603MIK 887114 ENCODE Processing Pipeline 00020b4b010d07d38f7110db620ee494 https://www.encodeproject.org/files/ENCFF449NOT/@@download/ENCFF449NOT.bed.gz hg19 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF910TER bed narrowPeak optimal idr thresholded peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell adult female 27 year, 43 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF578KAH, ENCFF855NJI, ENCFF890TVV 884292 ENCODE Processing Pipeline 0f1faa172b8c46f8eac9ac3874c20c16 https://www.encodeproject.org/files/ENCFF910TER/@@download/ENCFF910TER.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF578KAH bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell adult female 27 year, 43 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1 ENCFF112XEQ 5428061 ENCODE Processing Pipeline 6ba116246109d47d0b87056ffd88e21a https://www.encodeproject.org/files/ENCFF578KAH/@@download/ENCFF578KAH.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF855NJI bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell adult female 27 year, 43 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 2 ENCFF685DBQ 5234024 ENCODE Processing Pipeline abcc8e045c65823f9e876e63d02362cf https://www.encodeproject.org/files/ENCFF855NJI/@@download/ENCFF855NJI.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF890TVV bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell adult female 27 year, 43 year Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF112XEQ, ENCFF685DBQ 5932661 ENCODE Processing Pipeline 2a45a7265c3fc00dc0631fd608a40858 https://www.encodeproject.org/files/ENCFF890TVV/@@download/ENCFF890TVV.bed.gz GRCh38 released low read depth, moderate library complexity, mild to moderate bottlenecking, low read length ENCFF536OEM bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 immortalized cell line adult male 48 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF654OKM 6456581 ENCODE Processing Pipeline 67ca50ace187082751a8ac217c988297 https://www.encodeproject.org/files/ENCFF536OEM/@@download/ENCFF536OEM.bed.gz hg19 released mixed read lengths, moderate library complexity, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF607FHS bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 immortalized cell line adult male 48 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP 6332816 ENCODE Processing Pipeline eb8dba5e0c5c90d342f6ffcbf32ae0c0 https://www.encodeproject.org/files/ENCFF607FHS/@@download/ENCFF607FHS.bed.gz hg19 released mixed read lengths, moderate library complexity, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF344EMX bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 immortalized cell line adult male 48 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP, ENCFF654OKM 6877157 ENCODE Processing Pipeline 610201e7eec5da32b9cd391a42b960ee https://www.encodeproject.org/files/ENCFF344EMX/@@download/ENCFF344EMX.bed.gz hg19 released mixed read lengths, moderate library complexity, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF862VFJ bed narrowPeak conservative idr thresholded peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 immortalized cell line adult male 48 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF001TDO, ENCFF344EMX, ENCFF536OEM, ENCFF607FHS 1500244 ENCODE Processing Pipeline 3ea35f80ad188673c48542f634d09d79 https://www.encodeproject.org/files/ENCFF862VFJ/@@download/ENCFF862VFJ.bed.gz hg19 released mixed read lengths, moderate library complexity, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF821IRB bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 immortalized cell line adult male 48 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF046QZN, ENCFF120JNQ, ENCFF537BWA, ENCFF931HUP 6804360 ENCODE Processing Pipeline 82dca660a97f47c704bda5eb8bd90db3 https://www.encodeproject.org/files/ENCFF821IRB/@@download/ENCFF821IRB.bed.gz GRCh38 released mixed read lengths, moderate library complexity, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF418CJB bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 immortalized cell line adult male 48 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1 ENCFF046QZN, ENCFF537BWA, ENCFF931HUP 6458509 ENCODE Processing Pipeline 01d284d301fa117c0ccbfb9b3e73a91d https://www.encodeproject.org/files/ENCFF418CJB/@@download/ENCFF418CJB.bed.gz GRCh38 released mixed read lengths, moderate library complexity, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF499TID bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 immortalized cell line adult male 48 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 2 ENCFF046QZN, ENCFF120JNQ, ENCFF537BWA 6228126 ENCODE Processing Pipeline 7db81b8766af6935d1143bd597fff90b https://www.encodeproject.org/files/ENCFF499TID/@@download/ENCFF499TID.bed.gz GRCh38 released mixed read lengths, moderate library complexity, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF186NOM bed narrowPeak optimal idr thresholded peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 immortalized cell line adult male 48 year Homo sapiens CTCF-human ENCAB000AXX DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF418CJB, ENCFF419RSJ, ENCFF499TID, ENCFF821IRB 1485614 ENCODE Processing Pipeline 522a8b46a6dbd17244d52faf5f2c27b7 https://www.encodeproject.org/files/ENCFF186NOM/@@download/ENCFF186NOM.bed.gz GRCh38 released mixed read lengths, moderate library complexity, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF032RWR bed narrowPeak peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF025ZGL, ENCFF055UXI 6296645 ENCODE Processing Pipeline 52df0559d48701f0f1836733f84bf255 https://www.encodeproject.org/files/ENCFF032RWR/@@download/ENCFF032RWR.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF458RNI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF032RWR 751630 ENCODE Processing Pipeline 2644bc4914a644c1dd9e5a310e4b4978 https://www.encodeproject.org/files/ENCFF458RNI/@@download/ENCFF458RNI.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF725HCJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF492GFG 737361 ENCODE Processing Pipeline be10a1f2bef5fdab6df6f3bcf6bcccce https://www.encodeproject.org/files/ENCFF725HCJ/@@download/ENCFF725HCJ.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF492GFG bed narrowPeak peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2017-01-30 ENCODE 1 ENCFF084AUO, ENCFF667TEE 6250466 ENCODE Processing Pipeline f40c75784168dbe2147484d85b49f93c https://www.encodeproject.org/files/ENCFF492GFG/@@download/ENCFF492GFG.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF142FYE bed narrowPeak peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF744HKB, ENCFF928FSC 5990872 ENCODE Processing Pipeline f8dd3e03ef057fbc2f714c956e7f72d8 https://www.encodeproject.org/files/ENCFF142FYE/@@download/ENCFF142FYE.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF665OBP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF142FYE 646417 ENCODE Processing Pipeline 457b941cc82434201d517028c3f5d598 https://www.encodeproject.org/files/ENCFF665OBP/@@download/ENCFF665OBP.bed.gz hg19 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF749PCR bed narrowPeak peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF196CKN, ENCFF621CXJ 5996749 ENCODE Processing Pipeline b48732b32e020b3e6d00c1d2a8fa5715 https://www.encodeproject.org/files/ENCFF749PCR/@@download/ENCFF749PCR.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF136LAP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue adult female 53 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF749PCR 654499 ENCODE Processing Pipeline c7b0f4129596c4f3e6978adca81e9426 https://www.encodeproject.org/files/ENCFF136LAP/@@download/ENCFF136LAP.bed.gz GRCh38 released antibody characterized with exemption, mild to moderate bottlenecking experiment not submitted to GEO ENCFF245JXB bed narrowPeak peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF259DRG, ENCFF837NJP 7170562 ENCODE Processing Pipeline a44cb707f8b90ef0f032ad67b19427dd https://www.encodeproject.org/files/ENCFF245JXB/@@download/ENCFF245JXB.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF215GGE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF245JXB 807987 ENCODE Processing Pipeline 06122543cfa22e6b6427b66949f470f2 https://www.encodeproject.org/files/ENCFF215GGE/@@download/ENCFF215GGE.bed.gz hg19 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF411KGD bed narrowPeak peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF626LKC, ENCFF693ANZ 7174687 ENCODE Processing Pipeline 168d0ffe9709a443c30286b0b7c045e7 https://www.encodeproject.org/files/ENCFF411KGD/@@download/ENCFF411KGD.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO ENCFF574FIL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue adult male 54 year Homo sapiens CTCF-human ENCAB830JLB DNA False 2016-11-07 ENCODE 1 ENCFF411KGD, ENCFF419RSJ 807722 ENCODE Processing Pipeline 8371b117d5252bb3767d2f28a355ac8f https://www.encodeproject.org/files/ENCFF574FIL/@@download/ENCFF574FIL.bed.gz GRCh38 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking experiment not submitted to GEO