/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Homo_sapiens-human_ChIP_1-ERR022295.36mers.unique.merged.bam Homo_sapiens-human_ChIP_1-ERR022295.36mers.unique.bam Homo_sapiens-human_ChIP_2-ERR022303.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Macaca_mulatta-macaque_ChIP_1-ERR022289.36mers.unique.merged.bam Macaca_mulatta-macaque_ChIP_1-ERR022289.36mers.unique.bam Macaca_mulatta-macaque_ChIP_2-ERR022274.36mers.unique.bam Macaca_mulatta-macaque_ChIP_3-ERR022275.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Mus_musculus-mouse_ChIP_1-ERR022291.36mers.unique.merged.bam Mus_musculus-mouse_ChIP_1-ERR022291.36mers.unique.bam Mus_musculus-mouse_ChIP_2-ERR022305.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Rattus_norvegicus-rat_ChIP_1-ERR022308.36mers.unique.merged.bam Rattus_norvegicus-rat_ChIP_1-ERR022308.36mers.unique.bam Rattus_norvegicus-rat_ChIP_2-ERR022309.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Canis_familiaris-dog_ChIP_1-ERR022286.36mers.unique.merged.bam Canis_familiaris-dog_ChIP_1-ERR022286.36mers.unique.bam Canis_familiaris-dog_ChIP_2-ERR022304.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Monodelphis_domesticus-opossum_ChIP_1-ERR022306.36mers.unique.merged.bam Monodelphis_domesticus-opossum_ChIP_1-ERR022306.36mers.unique.bam Monodelphis_domesticus-opossum_ChIP_2-ERR022301.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Homo_sapiens-human_input_1-ERR022276.36mers.unique.merged.bam Homo_sapiens-human_input_1-ERR022276.36mers.unique.bam Homo_sapiens-human_input_2-ERR022300.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Macaca_mulatta-macaque_input_1-ERR022292.36mers.unique.merged.bam Macaca_mulatta-macaque_input_1-ERR022292.36mers.unique.bam Macaca_mulatta-macaque_input_2-ERR022287.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Mus_musculus-mouse_input_1-ERR022272.36mers.unique.merged.bam Mus_musculus-mouse_input_1-ERR022272.36mers.unique.bam Mus_musculus-mouse_input_2-ERR022296.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Rattus_norvegicus-rat_input_1-ERR022310.36mers.unique.merged.bam Rattus_norvegicus-rat_input_1-ERR022310.36mers.unique.bam Rattus_norvegicus-rat_input_2-ERR022311.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Canis_familiaris-dog_input_1-ERR022270.36mers.unique.merged.bam Canis_familiaris-dog_input_1-ERR022270.36mers.unique.bam Canis_familiaris-dog_input_2-ERR022271.36mers.unique.bam Canis_familiaris-dog_input_3-ERR022285.36mers.unique.bam
/oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools merge -f Monodelphis_domesticus-opossum_input_1-ERR022302.36mers.unique.merged.bam Monodelphis_domesticus-opossum_input_1-ERR022302.36mers.unique.bam Monodelphis_domesticus-opossum_input_2-ERR022307.36mers.unique.bam