Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Homo_sapiens-human_ChIP_1-ERR022295.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Homo_sapiens-human_ChIP_1-ERR022295.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Homo_sapiens-human_ChIP_2-ERR022303.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Homo_sapiens-human_ChIP_2-ERR022303.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Homo_sapiens-human_input_1-ERR022276.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Homo_sapiens-human_input_1-ERR022276.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Homo_sapiens-human_input_2-ERR022300.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Homo_sapiens-human_input_2-ERR022300.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Macaca_mulatta-macaque_ChIP_1-ERR022289.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Macaca_mulatta-macaque_ChIP_1-ERR022289.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Macaca_mulatta-macaque_ChIP_2-ERR022274.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Macaca_mulatta-macaque_ChIP_2-ERR022274.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Macaca_mulatta-macaque_ChIP_3-ERR022275.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Macaca_mulatta-macaque_ChIP_3-ERR022275.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Macaca_mulatta-macaque_input_1-ERR022292.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Macaca_mulatta-macaque_input_1-ERR022292.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Macaca_mulatta-macaque_input_2-ERR022287.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Macaca_mulatta-macaque_input_2-ERR022287.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Mus_musculus-mouse_ChIP_1-ERR022291.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mus_musculus-mouse_ChIP_1-ERR022291.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Mus_musculus-mouse_ChIP_2-ERR022305.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mus_musculus-mouse_ChIP_2-ERR022305.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Mus_musculus-mouse_input_1-ERR022272.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mus_musculus-mouse_input_1-ERR022272.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Mus_musculus-mouse_input_2-ERR022296.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Mus_musculus-mouse_input_2-ERR022296.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Rattus_norvegicus-rat_ChIP_1-ERR022308.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Rattus_norvegicus-rat_ChIP_1-ERR022308.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Rattus_norvegicus-rat_ChIP_2-ERR022309.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Rattus_norvegicus-rat_ChIP_2-ERR022309.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Rattus_norvegicus-rat_input_1-ERR022310.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Rattus_norvegicus-rat_input_1-ERR022310.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Rattus_norvegicus-rat_input_2-ERR022311.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Rattus_norvegicus-rat_input_2-ERR022311.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Canis_familiaris-dog_ChIP_1-ERR022286.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-dog_ChIP_1-ERR022286.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Canis_familiaris-dog_ChIP_2-ERR022304.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-dog_ChIP_2-ERR022304.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Canis_familiaris-dog_input_1-ERR022270.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-dog_input_1-ERR022270.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Canis_familiaris-dog_input_2-ERR022271.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-dog_input_2-ERR022271.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Canis_familiaris-dog_input_3-ERR022285.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Canis_familiaris-dog_input_3-ERR022285.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Monodelphis_domesticus-opossum_ChIP_1-ERR022306.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domesticus-opossum_ChIP_1-ERR022306.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Monodelphis_domesticus-opossum_ChIP_2-ERR022301.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domesticus-opossum_ChIP_2-ERR022301.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Monodelphis_domesticus-opossum_input_1-ERR022302.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domesticus-opossum_input_1-ERR022302.36mers.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=Monodelphis_domesticus-opossum_input_2-ERR022307.36mers.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=Monodelphis_domesticus-opossum_input_2-ERR022307.36mers.unique.QC