/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Homo_sapiens-human_ChIP_1-ERR022295.36mers.unique.merged.sorted.bam -c Homo_sapiens-human_input_1-ERR022276.36mers.unique.merged.sorted.bam -n Homo_sapiens-human_ChIP_1-ERR022295.36mers.unique.merged.sorted.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Macaca_mulatta-macaque_ChIP_1-ERR022289.36mers.unique.merged.sorted.bam -c Macaca_mulatta-macaque_input_1-ERR022292.36mers.unique.merged.sorted.bam -n Macaca_mulatta-macaque_ChIP_1-ERR022289.36mers.unique.merged.sorted.MACS-2.1.0 -g 3097179960 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Mus_musculus-mouse_ChIP_1-ERR022291.36mers.unique.merged.sorted.bam -c Mus_musculus-mouse_input_1-ERR022272.36mers.unique.merged.sorted.bam -n Mus_musculus-mouse_ChIP_1-ERR022291.36mers.unique.merged.sorted.MACS-2.1.0 -g mm -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Rattus_norvegicus-rat_ChIP_1-ERR022308.36mers.unique.merged.sorted.bam -c Rattus_norvegicus-rat_input_1-ERR022310.36mers.unique.merged.sorted.bam -n Rattus_norvegicus-rat_ChIP_1-ERR022308.36mers.unique.merged.sorted.MACS-2.1.0 -g 2909698938 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Canis_familiaris-dog_ChIP_1-ERR022286.36mers.unique.merged.sorted.bam -c Canis_familiaris-dog_input_1-ERR022270.36mers.unique.merged.sorted.bam -n Canis_familiaris-dog_ChIP_1-ERR022286.36mers.unique.merged.sorted.MACS-2.1.0 -g 2410976875 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Monodelphis_domesticus-opossum_ChIP_1-ERR022306.36mers.unique.merged.sorted.bam -c Monodelphis_domesticus-opossum_input_1-ERR022302.36mers.unique.merged.sorted.bam -n Monodelphis_domesticus-opossum_ChIP_1-ERR022306.36mers.unique.merged.sorted.MACS-2.1.0 -g 3605631728 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Homo_sapiens-human_ChIP_1-ERR022295.36mers.unique.bam -c Homo_sapiens-human_input_1-ERR022276.36mers.unique.bam -n Homo_sapiens-human_ChIP_1-ERR022295.36mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Homo_sapiens-human_ChIP_2-ERR022303.36mers.unique.bam -c Homo_sapiens-human_input_2-ERR022300.36mers.unique.bam -n Homo_sapiens-human_ChIP_2-ERR022303.36mers.unique.MACS-2.1.0 -g hs -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Macaca_mulatta-macaque_ChIP_1-ERR022289.36mers.unique.bam -c Macaca_mulatta-macaque_input_1-ERR022292.36mers.unique.bam -n Macaca_mulatta-macaque_ChIP_1-ERR022289.36mers.unique.MACS-2.1.0 -g 3097179960 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Macaca_mulatta-macaque_ChIP_2-ERR022274.36mers.unique.bam -c Macaca_mulatta-macaque_input_2-ERR022287.36mers.unique.bam -n Macaca_mulatta-macaque_ChIP_2-ERR022274.36mers.unique.MACS-2.1.0 -g 3097179960 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Macaca_mulatta-macaque_ChIP_3-ERR022275.36mers.unique.bam -c Macaca_mulatta-macaque_input_2-ERR022287.36mers.unique.bam -n Macaca_mulatta-macaque_ChIP_3-ERR022275.36mers.unique.MACS-2.1.0 -g 3097179960 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Mus_musculus-mouse_ChIP_1-ERR022291.36mers.unique.bam -c Mus_musculus-mouse_input_1-ERR022272.36mers.unique.bam -n Mus_musculus-mouse_ChIP_1-ERR022291.36mers.unique.MACS-2.1.0 -g mm -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Mus_musculus-mouse_ChIP_2-ERR022305.36mers.unique.bam -c Mus_musculus-mouse_input_2-ERR022296.36mers.unique.bam -n Mus_musculus-mouse_ChIP_2-ERR022305.36mers.unique.MACS-2.1.0 -g mm -f BAM --keep-dup all
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Rattus_norvegicus-rat_ChIP_1-ERR022308.36mers.unique.bam -c Rattus_norvegicus-rat_input_1-ERR022310.36mers.unique.bam -n Rattus_norvegicus-rat_ChIP_1-ERR022308.36mers.unique.MACS-2.1.0 -g 2909698938 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Rattus_norvegicus-rat_ChIP_2-ERR022309.36mers.unique.bam -c Rattus_norvegicus-rat_input_2-ERR022311.36mers.unique.bam -n Rattus_norvegicus-rat_ChIP_2-ERR022309.36mers.unique.MACS-2.1.0 -g 2909698938 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Canis_familiaris-dog_ChIP_1-ERR022286.36mers.unique.bam -c Canis_familiaris-dog_input_1-ERR022270.36mers.unique.bam -n Canis_familiaris-dog_ChIP_1-ERR022286.36mers.unique.MACS-2.1.0 -g 2410976875 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Canis_familiaris-dog_ChIP_2-ERR022304.36mers.unique.bam -c Canis_familiaris-dog_input_2-ERR022271.36mers.unique.bam -n Canis_familiaris-dog_ChIP_2-ERR022304.36mers.unique.MACS-2.1.0 -g 2410976875 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Monodelphis_domesticus-opossum_ChIP_1-ERR022306.36mers.unique.bam -c Monodelphis_domesticus-opossum_input_1-ERR022302.36mers.unique.bam -n Monodelphis_domesticus-opossum_ChIP_1-ERR022306.36mers.unique.MACS-2.1.0 -g 3605631728 -f BAM
/oak/stanford/groups/akundaje/marinovg/programs/MACS-2.1.0/bin/macs2 callpeak -t Monodelphis_domesticus-opossum_ChIP_2-ERR022301.36mers.unique.bam -c Monodelphis_domesticus-opossum_input_2-ERR022307.36mers.unique.bam -n Monodelphis_domesticus-opossum_ChIP_2-ERR022301.36mers.unique.MACS-2.1.0 -g 3605631728 -f BAM