python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py 13004_1_CTCFvalidationRNAseq_170812_S9_L001_R1_001.fastq.gz,13004_1_CTCFvalidationRNAseq_170812_S9_L002_R1_001.fastq.gz 13004_1_CTCFvalidationRNAseq_170812_S9_L001_R2_001.fastq.gz,13004_1_CTCFvalidationRNAseq_170812_S9_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 13004_1_CTCFvalidationRNAseq_170812_S9.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py 13004_2_CTCFvalidationRNAseq_170812_S10_L001_R1_001.fastq.gz,13004_2_CTCFvalidationRNAseq_170812_S10_L002_R1_001.fastq.gz 13004_2_CTCFvalidationRNAseq_170812_S10_L001_R2_001.fastq.gz,13004_2_CTCFvalidationRNAseq_170812_S10_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 13004_2_CTCFvalidationRNAseq_170812_S10.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py 13006_1_CTCFvalidationRNAseq_170812_S11_L001_R1_001.fastq.gz,13006_1_CTCFvalidationRNAseq_170812_S11_L002_R1_001.fastq.gz 13006_1_CTCFvalidationRNAseq_170812_S11_L001_R2_001.fastq.gz,13006_1_CTCFvalidationRNAseq_170812_S11_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 13006_1_CTCFvalidationRNAseq_170812_S11.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py 13006_2_CTCFvalidationRNAseq_170812_S12_L001_R1_001.fastq.gz,13006_2_CTCFvalidationRNAseq_170812_S12_L002_R1_001.fastq.gz 13006_2_CTCFvalidationRNAseq_170812_S12_L001_R2_001.fastq.gz,13006_2_CTCFvalidationRNAseq_170812_S12_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 13006_2_CTCFvalidationRNAseq_170812_S12.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py GH549_1_CTCFvalidationRNAseq_170812_S1_L001_R1_001.fastq.gz,GH549_1_CTCFvalidationRNAseq_170812_S1_L002_R1_001.fastq.gz GH549_1_CTCFvalidationRNAseq_170812_S1_L001_R2_001.fastq.gz,GH549_1_CTCFvalidationRNAseq_170812_S1_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 12040-GH549_1_CTCFvalidationRNAseq_170812_S1.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py GH549_2_CTCFvalidationRNAseq_170812_S2_L001_R1_001.fastq.gz,GH549_2_CTCFvalidationRNAseq_170812_S2_L002_R1_001.fastq.gz GH549_2_CTCFvalidationRNAseq_170812_S2_L001_R2_001.fastq.gz,GH549_2_CTCFvalidationRNAseq_170812_S2_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 12040-GH549_2_CTCFvalidationRNAseq_170812_S2.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py GH550_1_CTCFvalidationRNAseq_170812_S3_L001_R1_001.fastq.gz,GH550_1_CTCFvalidationRNAseq_170812_S3_L002_R1_001.fastq.gz GH550_1_CTCFvalidationRNAseq_170812_S3_L001_R2_001.fastq.gz,GH550_1_CTCFvalidationRNAseq_170812_S3_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 12042-GH550_1_CTCFvalidationRNAseq_170812_S3.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py GH550_2_CTCFvalidationRNAseq_170812_S4_L001_R1_001.fastq.gz,GH550_2_CTCFvalidationRNAseq_170812_S4_L002_R1_001.fastq.gz GH550_2_CTCFvalidationRNAseq_170812_S4_L001_R2_001.fastq.gz,GH550_2_CTCFvalidationRNAseq_170812_S4_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 12042-GH550_2_CTCFvalidationRNAseq_170812_S4.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py GH551_1_CTCFvalidationRNAseq_170812_S5_L001_R1_001.fastq.gz,GH551_1_CTCFvalidationRNAseq_170812_S5_L002_R1_001.fastq.gz GH551_1_CTCFvalidationRNAseq_170812_S5_L001_R2_001.fastq.gz,GH551_1_CTCFvalidationRNAseq_170812_S5_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 14376-GH551_1_CTCFvalidationRNAseq_170812_S5.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py GH551_2_CTCFvalidationRNAseq_170812_S6_L001_R1_001.fastq.gz,GH551_2_CTCFvalidationRNAseq_170812_S6_L002_R1_001.fastq.gz GH551_2_CTCFvalidationRNAseq_170812_S6_L001_R2_001.fastq.gz,GH551_2_CTCFvalidationRNAseq_170812_S6_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 14376-GH551_2_CTCFvalidationRNAseq_170812_S6.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py GH552_1_CTCFvalidationRNAseq_170812_S7_L001_R1_001.fastq.gz,GH552_1_CTCFvalidationRNAseq_170812_S7_L002_R1_001.fastq.gz GH552_1_CTCFvalidationRNAseq_170812_S7_L001_R2_001.fastq.gz,GH552_1_CTCFvalidationRNAseq_170812_S7_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 14377-GH552_1_CTCFvalidationRNAseq_170812_S7.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py GH552_2_CTCFvalidationRNAseq_170812_S8_L001_R1_001.fastq.gz,GH552_2_CTCFvalidationRNAseq_170812_S8_L002_R1_001.fastq.gz GH552_2_CTCFvalidationRNAseq_170812_S8_L001_R2_001.fastq.gz,GH552_2_CTCFvalidationRNAseq_170812_S8_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - 14377-GH552_2_CTCFvalidationRNAseq_170812_S8.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py N4293_1_CTCFvalidationRNAseq_170812_S13_L001_R1_001.fastq.gz,N4293_1_CTCFvalidationRNAseq_170812_S13_L002_R1_001.fastq.gz N4293_1_CTCFvalidationRNAseq_170812_S13_L001_R2_001.fastq.gz,N4293_1_CTCFvalidationRNAseq_170812_S13_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - N4293_1_CTCFvalidationRNAseq_170812_S13.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py N4293_2_CTCFvalidationRNAseq_170812_S14_L001_R1_001.fastq.gz,N4293_2_CTCFvalidationRNAseq_170812_S14_L002_R1_001.fastq.gz N4293_2_CTCFvalidationRNAseq_170812_S14_L001_R2_001.fastq.gz,N4293_2_CTCFvalidationRNAseq_170812_S14_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - N4293_2_CTCFvalidationRNAseq_170812_S14.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py N4871_1_CTCFvalidationRNAseq_170812_S15_L001_R1_001.fastq.gz,N4871_1_CTCFvalidationRNAseq_170812_S15_L002_R1_001.fastq.gz N4871_1_CTCFvalidationRNAseq_170812_S15_L001_R2_001.fastq.gz,N4871_1_CTCFvalidationRNAseq_170812_S15_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - N4871_1_CTCFvalidationRNAseq_170812_S15.50mers
python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited.py N4871_2_CTCFvalidationRNAseq_170812_S16_L001_R1_001.fastq.gz,N4871_2_CTCFvalidationRNAseq_170812_S16_L002_R1_001.fastq.gz N4871_2_CTCFvalidationRNAseq_170812_S16_L001_R2_001.fastq.gz,N4871_2_CTCFvalidationRNAseq_170812_S16_L002_R2_001.fastq.gz -trim 50 50 -minReadLen 50 | python /oak/stanford/groups/akundaje/marinovg/code/PEFastqToTabDelimited-reverse.py - N4871_2_CTCFvalidationRNAseq_170812_S16.50mers