python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 13004_1_CTCFvalidationRNAseq_170812_S9-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-13004_1_CTCFvalidationRNAseq_170812_S9 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 13004_2_CTCFvalidationRNAseq_170812_S10-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-13004_2_CTCFvalidationRNAseq_170812_S10 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 13006_1_CTCFvalidationRNAseq_170812_S11-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-13006_1_CTCFvalidationRNAseq_170812_S11 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 13006_2_CTCFvalidationRNAseq_170812_S12-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-13006_2_CTCFvalidationRNAseq_170812_S12 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 12040-GH549_1_CTCFvalidationRNAseq_170812_S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-12040-GH549_1_CTCFvalidationRNAseq_170812_S1 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 12040-GH549_2_CTCFvalidationRNAseq_170812_S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-12040-GH549_2_CTCFvalidationRNAseq_170812_S2 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 12042-GH550_1_CTCFvalidationRNAseq_170812_S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-12042-GH550_1_CTCFvalidationRNAseq_170812_S3 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 12042-GH550_2_CTCFvalidationRNAseq_170812_S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-12042-GH550_2_CTCFvalidationRNAseq_170812_S4 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 14376-GH551_1_CTCFvalidationRNAseq_170812_S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-14376-GH551_1_CTCFvalidationRNAseq_170812_S5 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 14376-GH551_2_CTCFvalidationRNAseq_170812_S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-14376-GH551_2_CTCFvalidationRNAseq_170812_S6 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 14377-GH552_1_CTCFvalidationRNAseq_170812_S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-14377-GH552_1_CTCFvalidationRNAseq_170812_S7 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf 14377-GH552_2_CTCFvalidationRNAseq_170812_S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-14377-GH552_2_CTCFvalidationRNAseq_170812_S8 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf N4293_1_CTCFvalidationRNAseq_170812_S13-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-N4293_1_CTCFvalidationRNAseq_170812_S13 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf N4293_2_CTCFvalidationRNAseq_170812_S14-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-N4293_2_CTCFvalidationRNAseq_170812_S14 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf N4871_1_CTCFvalidationRNAseq_170812_S15-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-N4871_1_CTCFvalidationRNAseq_170812_S15 -normalize -singlemodelgenes &
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19-refSeq.withNames.gtf N4871_2_CTCFvalidationRNAseq_170812_S16-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig.bz2 1000 coverage-N4871_2_CTCFvalidationRNAseq_170812_S16 -normalize -singlemodelgenes &