python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 13004_1_CTCFvalidationRNAseq_170812_S9-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-13004_1_CTCFvalidationRNAseq_170812_S9 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 13004_2_CTCFvalidationRNAseq_170812_S10-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-13004_2_CTCFvalidationRNAseq_170812_S10 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 13006_1_CTCFvalidationRNAseq_170812_S11-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-13006_1_CTCFvalidationRNAseq_170812_S11 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 13006_2_CTCFvalidationRNAseq_170812_S12-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-13006_2_CTCFvalidationRNAseq_170812_S12 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 12040-GH549_1_CTCFvalidationRNAseq_170812_S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-12040-GH549_1_CTCFvalidationRNAseq_170812_S1 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 12040-GH549_2_CTCFvalidationRNAseq_170812_S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-12040-GH549_2_CTCFvalidationRNAseq_170812_S2 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 12042-GH550_1_CTCFvalidationRNAseq_170812_S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-12042-GH550_1_CTCFvalidationRNAseq_170812_S3 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 12042-GH550_2_CTCFvalidationRNAseq_170812_S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-12042-GH550_2_CTCFvalidationRNAseq_170812_S4 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 14376-GH551_1_CTCFvalidationRNAseq_170812_S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-14376-GH551_1_CTCFvalidationRNAseq_170812_S5 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 14376-GH551_2_CTCFvalidationRNAseq_170812_S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-14376-GH551_2_CTCFvalidationRNAseq_170812_S6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 14377-GH552_1_CTCFvalidationRNAseq_170812_S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-14377-GH552_1_CTCFvalidationRNAseq_170812_S7 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 14377-GH552_2_CTCFvalidationRNAseq_170812_S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-14377-GH552_2_CTCFvalidationRNAseq_170812_S8 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py N4293_1_CTCFvalidationRNAseq_170812_S13-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-N4293_1_CTCFvalidationRNAseq_170812_S13 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py N4293_2_CTCFvalidationRNAseq_170812_S14-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-N4293_2_CTCFvalidationRNAseq_170812_S14 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py N4871_1_CTCFvalidationRNAseq_170812_S15-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-N4871_1_CTCFvalidationRNAseq_170812_S15 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py N4871_2_CTCFvalidationRNAseq_170812_S16-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-Aligned.sortedByCoord.out.bam SAMstats-N4871_2_CTCFvalidationRNAseq_170812_S16 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.19/samtools -paired &