python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13004-rep1-S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13004-rep1-S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13004-rep2-S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13004-rep2-S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13006-rep1-S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13006-rep1-S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13006-rep2-S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13006-rep2-S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13189-rep1-JT_CTCFvalidationRNAseq_170303_S9-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13189-rep1-JT_CTCFvalidationRNAseq_170303_S9-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13189-rep2-JT_CTCFvalidationRNAseq_170303_S10-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13189-rep2-JT_CTCFvalidationRNAseq_170303_S10-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13190-rep1-JT_CTCFvalidationRNAseq_170303_S11-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13190-rep1-JT_CTCFvalidationRNAseq_170303_S11-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13190-rep2-JT_CTCFvalidationRNAseq_170303_S12-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13190-rep2-JT_CTCFvalidationRNAseq_170303_S12-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 15171-rep1-JT_CTCFvalidationRNAseq_170303_S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 15171-rep1-JT_CTCFvalidationRNAseq_170303_S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 15171-rep2-JT_CTCFvalidationRNAseq_170303_S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 15171-rep2-JT_CTCFvalidationRNAseq_170303_S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 15173-rep1-JT_CTCFvalidationRNAseq_170303_S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 15173-rep1-JT_CTCFvalidationRNAseq_170303_S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 15173-rep2-JT_CTCFvalidationRNAseq_170303_S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 15173-rep2-JT_CTCFvalidationRNAseq_170303_S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4293-rep1-JT_CTCFvalidationRNAseq_170303_S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4293-rep1-JT_CTCFvalidationRNAseq_170303_S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4293-rep1-S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4293-rep1-S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4293-rep2-JT_CTCFvalidationRNAseq_170303_S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4293-rep2-JT_CTCFvalidationRNAseq_170303_S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4293-rep2-S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4293-rep2-S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4371-rep1-JT_CTCFvalidationRNAseq_170303_S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4371-rep1-JT_CTCFvalidationRNAseq_170303_S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4371-rep1-S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4371-rep1-S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4371-rep2-JT_CTCFvalidationRNAseq_170303_S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4371-rep2-JT_CTCFvalidationRNAseq_170303_S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4371-rep2-S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4371-rep2-S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.RPM.wig -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13004-rep1-S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13004-rep1-S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13004-rep2-S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13004-rep2-S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13006-rep1-S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13006-rep1-S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13006-rep2-S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13006-rep2-S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13189-rep1-JT_CTCFvalidationRNAseq_170303_S9-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13189-rep1-JT_CTCFvalidationRNAseq_170303_S9-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13189-rep2-JT_CTCFvalidationRNAseq_170303_S10-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13189-rep2-JT_CTCFvalidationRNAseq_170303_S10-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13190-rep1-JT_CTCFvalidationRNAseq_170303_S11-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13190-rep1-JT_CTCFvalidationRNAseq_170303_S11-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 13190-rep2-JT_CTCFvalidationRNAseq_170303_S12-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 13190-rep2-JT_CTCFvalidationRNAseq_170303_S12-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 15171-rep1-JT_CTCFvalidationRNAseq_170303_S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 15171-rep1-JT_CTCFvalidationRNAseq_170303_S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 15171-rep2-JT_CTCFvalidationRNAseq_170303_S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 15171-rep2-JT_CTCFvalidationRNAseq_170303_S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 15173-rep1-JT_CTCFvalidationRNAseq_170303_S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 15173-rep1-JT_CTCFvalidationRNAseq_170303_S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== 15173-rep2-JT_CTCFvalidationRNAseq_170303_S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes 15173-rep2-JT_CTCFvalidationRNAseq_170303_S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4293-rep1-JT_CTCFvalidationRNAseq_170303_S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4293-rep1-JT_CTCFvalidationRNAseq_170303_S1-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4293-rep1-S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4293-rep1-S5-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4293-rep2-JT_CTCFvalidationRNAseq_170303_S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4293-rep2-JT_CTCFvalidationRNAseq_170303_S2-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4293-rep2-S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4293-rep2-S6-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4371-rep1-JT_CTCFvalidationRNAseq_170303_S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4371-rep1-JT_CTCFvalidationRNAseq_170303_S3-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4371-rep1-S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4371-rep1-S7-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4371-rep2-JT_CTCFvalidationRNAseq_170303_S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4371-rep2-JT_CTCFvalidationRNAseq_170303_S4-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== N4371-rep2-S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.bam /oak/stanford/groups/akundaje/marinovg/genomes/hg19/hg19.chrom.sizes N4371-rep2-S8-2x50mers-STAR2.5.3a-GENCODEV19/STAR-2.5.3a-aAligned.sortedByCoord.out.unique.RPM.wig -nomulti -RPM -notitle &