zcat 13004-1_S1_L00*_R1_001.fastq.gz | wc -l > 13004-1_S1.fastq.lines
zcat 13004-2_S2_L00*_R1_001.fastq.gz | wc -l > 13004-2_S2.fastq.lines
zcat 13006-1_S3_L00*_R1_001.fastq.gz | wc -l > 13006-1_S3.fastq.lines
zcat 13006-2_S4_L00*_R1_001.fastq.gz | wc -l > 13006-2_S4.fastq.lines
zcat 13189-1_JT_CTCFvalidationRNAseq_170303_S9_L00*_R1_001.fastq.gz | wc -l > 13189-1_JT_CTCFvalidationRNAseq_170303_S9.fastq.lines
zcat 13189-2_JT_CTCFvalidationRNAseq_170303_S10_L00*_R1_001.fastq.gz | wc -l > 13189-2_JT_CTCFvalidationRNAseq_170303_S10.fastq.lines
zcat 13190-1_JT_CTCFvalidationRNAseq_170303_S11_L00*_R1_001.fastq.gz | wc -l > 13190-1_JT_CTCFvalidationRNAseq_170303_S11.fastq.lines
zcat 13190-2_JT_CTCFvalidationRNAseq_170303_S12_L00*_R1_001.fastq.gz | wc -l > 13190-2_JT_CTCFvalidationRNAseq_170303_S12.fastq.lines
zcat 15171-1_JT_CTCFvalidationRNAseq_170303_S5_L00*_R1_001.fastq.gz | wc -l > 15171-1_JT_CTCFvalidationRNAseq_170303_S5.fastq.lines
zcat 15171-2_JT_CTCFvalidationRNAseq_170303_S6_L00*_R1_001.fastq.gz | wc -l > 15171-2_JT_CTCFvalidationRNAseq_170303_S6.fastq.lines
zcat 15173-1_JT_CTCFvalidationRNAseq_170303_S7_L00*_R1_001.fastq.gz | wc -l > 15173-1_JT_CTCFvalidationRNAseq_170303_S7.fastq.lines
zcat 15173-2_JT_CTCFvalidationRNAseq_170303_S8_L00*_R1_001.fastq.gz | wc -l > 15173-2_JT_CTCFvalidationRNAseq_170303_S8.fastq.lines
zcat N4293-1_JT_CTCFvalidationRNAseq_170303_S1_L00*_R1_001.fastq.gz | wc -l > N4293-1_JT_CTCFvalidationRNAseq_170303_S1.fastq.lines
zcat N4293-1_S5_L00*_R1_001.fastq.gz | wc -l > N4293-1_S5.fastq.lines
zcat N4293-2_JT_CTCFvalidationRNAseq_170303_S2_L00*_R1_001.fastq.gz | wc -l > N4293-2_JT_CTCFvalidationRNAseq_170303_S2.fastq.lines
zcat N4293-2_S6_L00*_R1_001.fastq.gz | wc -l > N4293-2_S6.fastq.lines
zcat N4371-1_JT_CTCFvalidationRNAseq_170303_S3_L00*_R1_001.fastq.gz | wc -l > N4371-1_JT_CTCFvalidationRNAseq_170303_S3.fastq.lines
zcat N4371-1_S7_L00*_R1_001.fastq.gz | wc -l > N4371-1_S7.fastq.lines
zcat N4371-2_JT_CTCFvalidationRNAseq_170303_S4_L00*_R1_001.fastq.gz | wc -l > N4371-2_JT_CTCFvalidationRNAseq_170303_S4.fastq.lines
zcat N4371-2_S8_L00*_R1_001.fastq.gz | wc -l > N4371-2_S8.fastq.lines