Index of /kundaje/marinovg/oak/various/papers/2019_NComm_CTCF-screen/2017-07-14-CRISPR-RNA-seq

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]13004-1_S1.fastq.ReadLengthDist2017-07-16 10:07 486  
[ ]13004-1_S1.fastq.lines2017-07-16 10:05 9  
[ ]13004-2_S2.fastq.ReadLengthDist2017-07-16 10:07 478  
[ ]13004-2_S2.fastq.lines2017-07-16 10:07 9  
[ ]13006-1_S3.fastq.ReadLengthDist2017-07-16 18:46 459  
[ ]13006-1_S3.fastq.lines2017-07-16 18:44 9  
[ ]13006-2_S4.fastq.ReadLengthDist2017-07-16 18:44 460  
[ ]13006-2_S4.fastq.lines2017-07-16 18:44 9  
[ ]13189-1_JT_CTCFvalidationRNAseq_170303_S9.fastq.ReadLengthDist2017-07-16 18:47 469  
[ ]13189-1_JT_CTCFvalidationRNAseq_170303_S9.fastq.lines2017-07-16 18:47 10  
[ ]13189-2_JT_CTCFvalidationRNAseq_170303_S10.fastq.ReadLengthDist2017-07-16 18:48 466  
[ ]13189-2_JT_CTCFvalidationRNAseq_170303_S10.fastq.lines2017-07-16 18:46 10  
[ ]13190-1_JT_CTCFvalidationRNAseq_170303_S11.fastq.ReadLengthDist2017-07-16 18:46 469  
[ ]13190-1_JT_CTCFvalidationRNAseq_170303_S11.fastq.lines2017-07-16 18:46 10  
[ ]13190-2_JT_CTCFvalidationRNAseq_170303_S12.fastq.ReadLengthDist2017-07-16 18:46 456  
[ ]13190-2_JT_CTCFvalidationRNAseq_170303_S12.fastq.lines2017-07-16 18:45 9  
[ ]15171-1_JT_CTCFvalidationRNAseq_170303_S5.fastq.ReadLengthDist2017-07-16 18:47 470  
[ ]15171-1_JT_CTCFvalidationRNAseq_170303_S5.fastq.lines2017-07-16 18:48 10  
[ ]15171-2_JT_CTCFvalidationRNAseq_170303_S6.fastq.ReadLengthDist2017-07-16 18:47 472  
[ ]15171-2_JT_CTCFvalidationRNAseq_170303_S6.fastq.lines2017-07-16 18:48 10  
[ ]15173-1_JT_CTCFvalidationRNAseq_170303_S7.fastq.ReadLengthDist2017-07-16 18:47 461  
[ ]15173-1_JT_CTCFvalidationRNAseq_170303_S7.fastq.lines2017-07-16 18:45 9  
[ ]15173-2_JT_CTCFvalidationRNAseq_170303_S8.fastq.ReadLengthDist2017-07-16 18:48 469  
[ ]15173-2_JT_CTCFvalidationRNAseq_170303_S8.fastq.lines2017-07-16 18:47 10  
[ ]Coordinate_overlap.DE-genes.files2017-07-20 22:45 4.9K 
[ ]Coordinate_overlap.table2017-07-20 22:47 4.8K 
[ ]Coordinate_overlap.target_loci.files2017-07-20 23:16 830  
[ ]DESeq-RSEM.protein_coding.overlap.counts.table2017-07-20 22:18 4.8K 
[ ]DESeq-RSEM.protein_coding.overlap.files2017-07-20 22:17 4.7K 
[ ]DESeq-RSEM.protein_coding.overlap.fraction.table2017-07-20 22:18 19K 
[DIR]DESeq2-RSEM/2017-08-17 21:25 -  
[ ]N4293-1_JT_CTCFvalidationRNAseq_170303_S1.fastq.ReadLengthDist2017-07-16 18:48 504  
[ ]N4293-1_JT_CTCFvalidationRNAseq_170303_S1.fastq.lines2017-07-16 18:46 10  
[ ]N4293-1_S5.fastq.ReadLengthDist2017-07-16 18:44 463  
[ ]N4293-1_S5.fastq.lines2017-07-16 18:44 9  
[ ]N4293-2_JT_CTCFvalidationRNAseq_170303_S2.fastq.ReadLengthDist2017-07-16 18:47 467  
[ ]N4293-2_JT_CTCFvalidationRNAseq_170303_S2.fastq.lines2017-07-16 18:46 10  
[ ]N4293-2_S6.fastq.ReadLengthDist2017-07-16 18:46 460  
[ ]N4293-2_S6.fastq.lines2017-07-16 18:43 9  
[ ]N4371-1_JT_CTCFvalidationRNAseq_170303_S3.fastq.ReadLengthDist2017-07-16 18:48 466  
[ ]N4371-1_JT_CTCFvalidationRNAseq_170303_S3.fastq.lines2017-07-16 18:45 10  
[ ]N4371-1_S7.fastq.ReadLengthDist2017-07-16 18:44 456  
[ ]N4371-1_S7.fastq.lines2017-07-16 18:44 9  
[ ]N4371-2_JT_CTCFvalidationRNAseq_170303_S4.fastq.ReadLengthDist2017-07-16 18:47 478  
[ ]N4371-2_JT_CTCFvalidationRNAseq_170303_S4.fastq.lines2017-07-16 18:48 10  
[ ]N4371-2_S8.fastq.ReadLengthDist2017-07-16 18:46 459  
[ ]N4371-2_S8.fastq.lines2017-07-16 18:44 9  
[ ]RSEM.condor2017-07-17 05:16 8.1K 
[ ]RSEM.genes.TPM.files2017-07-17 10:02 2.6K 
[ ]RSEM.genes.TPM.sumDups.protein_coding.log2FPKM+1.min10TPM.atr2017-07-17 10:13 618  
[IMG]RSEM.genes.TPM.sumDups.protein_coding.log2FPKM+1.min10TPM.cdt2017-07-17 10:13 1.9M 
[ ]RSEM.genes.TPM.sumDups.protein_coding.log2FPKM+1.min10TPM.gtr2017-07-17 10:13 353K 
[ ]RSEM.genes.TPM.sumDups.protein_coding.log2FPKM+1.min10TPM.jtv2017-07-17 10:20 933  
[IMG]RSEM.genes.TPM.sumDups.protein_coding.log2FPKM+1.min10TPM.png2017-07-17 10:21 43K 
[ ]RSEM.genes.TPM.sumDups.protein_coding.log2FPKM+1.min10TPM.table2017-07-17 10:11 2.4M 
[ ]RSEM.genes.TPM.sumDups.protein_coding.normalizedToMean.min10TPM.atr2017-07-17 10:15 620  
[IMG]RSEM.genes.TPM.sumDups.protein_coding.normalizedToMean.min10TPM.cdt2017-07-17 10:15 2.0M 
[ ]RSEM.genes.TPM.sumDups.protein_coding.normalizedToMean.min10TPM.gtr2017-07-17 10:15 353K 
[ ]RSEM.genes.TPM.sumDups.protein_coding.normalizedToMean.min10TPM.jtv2017-07-17 10:21 932  
[IMG]RSEM.genes.TPM.sumDups.protein_coding.normalizedToMean.min10TPM.png2017-07-17 10:21 75K 
[ ]RSEM.genes.TPM.sumDups.protein_coding.normalizedToMean.min10TPM.table2017-07-17 10:11 2.7M 
[ ]RSEM.genes.TPM.table2017-07-17 10:04 7.2M 
[ ]RSEM.genes.TPM.table.sumDups2017-07-17 10:05 5.2M 
[ ]RSEM.genes.TPM.table.sumDups.protein_coding2017-07-17 10:08 2.0M 
[ ]RSEM.genes.expected_counts.files2017-07-17 10:02 2.6K 
[ ]RSEM.genes.expected_counts.table2017-07-17 10:04 7.5M 
[ ]RSEM.genes.expected_counts.table.sumDups2017-07-17 10:05 5.4M 
[TXT]RSEM.sh2017-07-17 05:16 7.6K 
[ ]SAMstats.files2017-07-17 07:35 1.5K 
[TXT]SAMstats.sh2017-07-15 20:17 7.2K 
[ ]SAMstats.table2017-07-17 09:34 1.7K 
[DIR]SAMstats/2017-07-19 05:13 -  
[ ]STAR.condor2017-07-17 02:47 19K 
[TXT]STAR.sh2017-07-15 20:16 18K 
[TXT]countreads.sh2017-07-14 21:45 2.1K 
[ ]coverage.files2017-07-14 21:27 1.5K 
[TXT]coverage.sh2017-07-15 20:18 7.2K 
[ ]coverage.table2017-07-17 11:28 30K 
[DIR]coverage/2017-07-19 05:14 -  
[TXT]fastReadLengthDist.sh2017-07-15 11:53 3.6K 
[ ]guides-4247-4247.1KB-vs-genes-intersection22017-07-20 23:23 557  
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[ ]guides-4247-4247.100KB.bed2017-07-20 22:39 24  
[ ]guides-5226-5226.1KB-vs-genes-intersection22017-07-20 23:23 381  
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[ ]guides-5226-5226.100KB.bed2017-07-20 22:39 25  
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[ ]guides-11279-11279.100KB-vs-genes-intersection22017-07-20 23:23 323  
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[ ]guides-13023-13023.100KB-vs-genes-intersection22017-07-20 23:24 272  
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[ ]guides-14954-14954.100KB-vs-genes-intersection22017-07-20 23:23 47  
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[ ]guides-15171-15171.100KB-vs-genes-intersection22017-07-20 23:24 259  
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[TXT]gzip.sh2017-07-15 12:28 2.1K 
[DIR]leafCutter/2017-07-18 23:44 -  
[TXT]makewigglefromBAM.sh2017-07-15 20:17 15K 
[ ]sam_reads_in_genes.files2017-07-14 21:30 1.7K 
[TXT]sam_reads_in_genes.sh2017-07-15 20:18 8.4K 
[ ]sam_reads_in_genes.table2017-07-17 09:49 1.6K 
[DIR]sam_reads_in_genes/2017-07-19 05:14 -  
[TXT]samtools-index.sh2017-07-15 20:17 3.7K 
[TXT]trim-paired.sh2017-07-15 20:13 12K 
[TXT]trimfastq-rerun.sh2017-07-15 11:30 31K 
[TXT]trimfastq.sh2017-07-14 22:01 7.6K 
[ ]z2017-07-20 23:29 27K 
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