universe=vanilla

environment=

executable=/usr/bin/Rscript

log=IDR-SPP-ind.$(Process).log
output=IDR-SPP-ind.$(Process).out
error=IDR-SPP-ind.$(Process).err

request_cpus = 1
request_memory = 4000
request_disk = 0

Requirements = (Machine != "myostatin.cacr.caltech.edu")

arguments=batch-consistency-analysis.r SPP-300K-HepG2-CTCF-Broad-Rep1/HepG2-CTCF-Rep1-Broad.hg20-male.36mers.unique_VS_HepG2-Control-Rep1-Broad.hg20-male.36mers.unique.regionPeak SPP-300K-HepG2-CTCF-Broad-Rep2/HepG2-CTCF-Rep2-Broad.hg20-male.36mers.unique_VS_HepG2-Control-Rep2-Broad.hg20-male.36mers.unique.regionPeak -1 IDR-SPP-HepG2-CTCF-Broad 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-CTCF-Broad-Rep1/K562-CTCF-Rep1-Broad.hg20-female.36mers.unique_VS_K562-Control-Rep1-Broad.hg20-female.36mers.unique.regionPeak SPP-300K-K562-CTCF-Broad-Rep2/K562-CTCF-Rep2-Broad.hg20-female.36mers.unique_VS_K562-Control-Rep1-Broad.hg20-female.36mers.unique.regionPeak -1 IDR-SPP-K562-CTCF-Broad 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-HepG2-CTCF-HA-Rep1/HepG2-CTCF-Rep1-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep1-HA.hg20-male.36mers.unique.regionPeak SPP-300K-HepG2-CTCF-HA-Rep2/HepG2-CTCF-Rep2-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep2-HA.hg20-male.36mers.unique.regionPeak -1 IDR-SPP-HepG2-CTCF-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-HepG2-FOSL2-HA-Rep1/HepG2-FOSL2-Rep1-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep1-HA.hg20-male.36mers.unique.regionPeak SPP-300K-HepG2-FOSL2-HA-Rep2/HepG2-FOSL2-Rep2-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep2-HA.hg20-male.36mers.unique.regionPeak -1 IDR-SPP-HepG2-FOSL2-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-HepG2-FOXA1-sc101058-HA-Rep1/HepG2-FOXA1-sc101058-Rep1-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep1-HA.hg20-male.36mers.unique.regionPeak SPP-300K-HepG2-FOXA1-sc101058-HA-Rep2/HepG2-FOXA1-sc101058-Rep2-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep2-HA.hg20-male.36mers.unique.regionPeak -1 IDR-SPP-HepG2-FOXA1-sc101058-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-HepG2-FOXA1-sc6553-HA-Rep1/HepG2-FOXA1-sc6553-Rep1-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep1-HA.hg20-male.36mers.unique.regionPeak SPP-300K-HepG2-FOXA1-sc6553-HA-Rep2/HepG2-FOXA1-sc6553-Rep2-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep2-HA.hg20-male.36mers.unique.regionPeak -1 IDR-SPP-HepG2-FOXA1-sc6553-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-HepG2-FOXA2-HA-Rep1/HepG2-FOXA2-Rep1-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep1-HA.hg20-male.36mers.unique.regionPeak SPP-300K-HepG2-FOXA2-HA-Rep2/HepG2-FOXA2-Rep2-HA.hg20-male.36mers.unique_VS_HepG2-1PCR-Input-Rep2-HA.hg20-male.36mers.unique.regionPeak -1 IDR-SPP-HepG2-FOXA2-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-CTCF-HA-Rep1/K562-CTCF-Rep1-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V2-Rep2-HA.hg20-female.36mers.unique.regionPeak SPP-300K-K562-CTCF-HA-Rep2/K562-CTCF-Rep2-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V2-Rep2-HA.hg20-female.36mers.unique.regionPeak -1 IDR-SPP-K562-CTCF-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-CTCF-V0416101-HA-Rep1/K562-CTCF-V0416101-Rep1-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V0416101-Rep1-HA.hg20-female.36mers.unique.regionPeak SPP-300K-K562-CTCF-V0416101-HA-Rep2/K562-CTCF-V0416101-Rep2-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V0416101-Rep2-HA.hg20-female.36mers.unique.regionPeak -1 IDR-SPP-K562-CTCF-V0416101-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-MAX-V0416101-HA-Rep1/K562-MAX-V0416101-Rep1-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V0416101-Rep1-HA.hg20-female.36mers.unique.regionPeak SPP-300K-K562-MAX-V0416101-HA-Rep2/K562-MAX-V0416101-Rep2-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V0416101-Rep2-HA.hg20-female.36mers.unique.regionPeak -1 IDR-SPP-K562-MAX-V0416101-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-TEAD4-HA-Rep1/K562-TEAD4-Rep1-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V2-Rep2-HA.hg20-female.36mers.unique.regionPeak SPP-300K-K562-TEAD4-HA-Rep2/K562-TEAD4-Rep2-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V2-Rep2-HA.hg20-female.36mers.unique.regionPeak -1 IDR-SPP-K562-TEAD4-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-USF1-V0416101-HA-Rep1/K562-USF1-V0416101-Rep1-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V0416101-Rep1-HA.hg20-female.36mers.unique.regionPeak SPP-300K-K562-USF1-V0416101-HA-Rep2/K562-USF1-V0416101-Rep2-HA.hg20-female.36mers.unique_VS_K562-1PCR-Input-V0416101-Rep2-HA.hg20-female.36mers.unique.regionPeak -1 IDR-SPP-K562-USF1-V0416101-HA 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-JunD-IggRabbit-SYDH-Rep1/K562-JunD-IggRabbit-Rep1-SYDH.hg20-female.36mers.unique_VS_K562-IggRabbit-SYDH.hg20-female.36mers.unique.regionPeak SPP-300K-K562-JunD-IggRabbit-SYDH-Rep2/K562-JunD-IggRabbit-Rep2-SYDH.hg20-female.36mers.unique_VS_K562-IggRabbit-SYDH.hg20-female.36mers.unique.regionPeak -1 IDR-SPP-K562-JunD-IggRabbit-SYDH 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-MAX-IggRabbit-SYDH-Rep1/K562-MAX-IggRabbit-Rep1-SYDH.hg20-female.36mers.unique_VS_K562-IggRabbit-SYDH.hg20-female.36mers.unique.regionPeak SPP-300K-K562-MAX-IggRabbit-SYDH-Rep2/K562-MAX-IggRabbit-Rep2-SYDH.hg20-female.36mers.unique_VS_K562-IggRabbit-SYDH.hg20-female.36mers.unique.regionPeak -1 IDR-SPP-K562-MAX-IggRabbit-SYDH 0 F signal.value
queue
arguments=batch-consistency-analysis.r SPP-300K-K562-MAX-SYDH-Rep1/K562-MAX-Rep1-SYDH.hg20-female.27mers.unique_VS_K562-Input-SYDH.hg20-female.27mers.unique.regionPeak SPP-300K-K562-MAX-SYDH-Rep2/K562-MAX-Rep2-SYDH.hg20-female.27mers.unique_VS_K562-Input-SYDH.hg20-female.27mers.unique.regionPeak -1 IDR-SPP-K562-MAX-SYDH 0 F signal.value
queue