# /woldlab/castor/proj/programs/meme-4.6.1/bin/dreme -p SPP-300K-C2C12-60h-MEF2-37C-16272-vs-16504-Pooled.IDR_0.02.radius50bp.fa -n None -mink 3 -maxk 8 -e 0.05 -g 100 # ( /woldlab/castor/proj/programs/meme-4.6.1/bin/dreme -m 5 -p SPP-300K-C2C12-60h-MEF2-37C-16272-vs-16504-Pooled.IDR_0.02.radius50bp.fa ) # svn: E155007: '/woldlab/castor/home/georgi/papers/2017-ENCODE-enhancers/2016-10-30-muscle-plots' is not a working copy MEME version 4.5 ALPHABET= ACGT strands: + - Background letter frequencies (from A 0.263 C 0.237 G 0.237 T 0.264 # VALUES AFTER ERASING BEST WORD # WORD RC_WORD p P n N p-value E-value BEST DAAATA TATTTH 6166 16057 2006 16057 2.1e-642 9.8e-638 9.8e-638 TAAATA TATTTA 1976 16057 608 16057 1.2e-181 5.5e-177 AAAATA TATTTT 3703 16057 978 16057 1.8e-428 8.2e-424 GAAATA TATTTC 1405 16057 603 16057 2.3e-078 1.0e-073 MOTIF DAAATA 9.8e-638 letter-probability matrix: alength= 4 w= 6 nsites= 7616 E= 9.8e-638 0.537684 0.000000 0.191176 0.271140 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 log-odds matrix: alength= 4 w= 6 n= 7616 bayes= 0 E= 9.8e-638 1.031086 -10.816220 -0.306805 0.039392 1.926093 -10.816220 -10.815590 -10.973232 1.926093 -10.816220 -10.815590 -10.973232 1.926093 -10.816220 -10.815590 -10.973232 -10.968914 -10.816220 -10.815590 1.921775 1.926093 -10.816220 -10.815590 -10.973232 BEST CAGCTGYB VRCAGCTG 3798 16057 633 16057 8.5e-626 3.9e-621 2.0e-623 CAGCTGTG CACAGCTG 846 16057 150 16057 5.3e-122 2.4e-117 CAGCTGCG CGCAGCTG 137 16057 43 16057 5.4e-013 2.5e-008 CAGCTGCC GGCAGCTG 798 16057 164 16057 1.1e-103 4.8e-099 CAGCTGCT AGCAGCTG 1266 16057 177 16057 1.1e-211 5.0e-207 CAGCTGTT AACAGCTG 1108 16057 119 16057 1.2e-208 5.3e-204 CAGCTGTC GACAGCTG 1141 16057 115 16057 1.3e-220 6.1e-216 MOTIF CAGCTGYB 3.9e-621 letter-probability matrix: alength= 4 w= 8 nsites= 4373 E= 3.9e-621 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.410473 0.000000 0.589527 0.000000 0.375029 0.177910 0.447062 log-odds matrix: alength= 4 w= 8 n= 4373 bayes= 0 E= 3.9e-621 -10.169066 2.078366 -10.015741 -10.173384 1.925672 -10.016372 -10.015741 -10.173384 -10.169066 -10.016372 2.078996 -10.173384 -10.169066 2.078366 -10.015741 -10.173384 -10.169066 -10.016372 -10.015741 1.921354 -10.169066 -10.016372 2.078996 -10.173384 -10.169066 0.794200 -10.015741 1.159212 -10.169066 0.663988 -0.410262 0.760307 BEST TKAGTCAB VTGACTMA 2762 16057 415 16057 2.6e-465 1.2e-460 3.4e-475 TTAGTCAT ATGACTAA 257 16057 58 16057 1.3e-031 5.8e-027 TTAGTCAG CTGACTAA 132 16057 56 16057 1.3e-008 6.0e-004 TTAGTCAC GTGACTAA 209 16057 40 16057 2.7e-029 1.2e-024 TGAGTCAG CTGACTCA 667 16057 115 16057 9.7e-098 4.4e-093 TGAGTCAC GTGACTCA 845 16057 77 16057 1.2e-168 5.6e-164 TGAGTCAT ATGACTCA 796 16057 72 16057 3.8e-159 1.7e-154 MOTIF TKAGTCAB 1.2e-460 letter-probability matrix: alength= 4 w= 8 nsites= 2960 E= 1.2e-460 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.797297 0.202703 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.362500 0.275676 0.361824 log-odds matrix: alength= 4 w= 8 n= 2960 bayes= 0 E= 1.2e-460 -9.606669 -9.453975 -9.453344 1.920882 -9.606669 -9.453975 1.751838 -0.379766 1.925200 -9.453975 -9.453344 -9.610987 -9.606669 -9.453975 2.078524 -9.610987 -9.606669 -9.453975 -9.453344 1.920882 -9.606669 2.077894 -9.453344 -9.610987 1.925200 -9.453975 -9.453344 -9.610987 -9.606669 0.614803 0.220848 0.455102 BEST RVCCACA TGTGGBY 4400 16057 1736 16057 1.4e-321 6.2e-317 3.0e-342 AACCACA TGTGGTT 1500 16057 299 16057 1.1e-202 5.1e-198 GACCACA TGTGGTC 831 16057 249 16057 2.4e-076 1.1e-071 GGCCACA TGTGGCC 563 16057 304 16057 1.8e-019 8.1e-015 AGCCACA TGTGGCT 1020 16057 376 16057 4.2e-072 1.9e-067 GCCCACA TGTGGGC 504 16057 293 16057 1.8e-014 8.0e-010 ACCCACA TGTGGGT 591 16057 314 16057 3.4e-021 1.5e-016 MOTIF RVCCACA 6.2e-317 letter-probability matrix: alength= 4 w= 7 nsites= 5182 E= 6.2e-317 0.625048 0.000000 0.374952 0.000000 0.469124 0.216326 0.314550 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 log-odds matrix: alength= 4 w= 7 n= 5182 bayes= 0 E= 6.2e-317 1.248032 -10.261052 0.664391 -10.418064 0.834182 -0.129195 0.411120 -10.418064 -10.413746 2.078520 -10.260421 -10.418064 -10.413746 2.078520 -10.260421 -10.418064 1.925826 -10.261052 -10.260421 -10.418064 -10.413746 2.078520 -10.260421 -10.418064 1.925826 -10.261052 -10.260421 -10.418064 BEST CACCTGYY RRCAGGTG 1181 16057 341 16057 1.0e-113 4.5e-109 1.1e-115 CACCTGTC GACAGGTG 321 16057 60 16057 5.4e-045 2.4e-040 CACCTGCC GGCAGGTG 193 16057 104 16057 1.2e-007 5.3e-003 CACCTGCT AGCAGGTG 339 16057 110 16057 7.2e-029 3.2e-024 CACCTGTT AACAGGTG 371 16057 71 16057 5.4e-051 2.4e-046 MOTIF CACCTGYY 4.5e-109 letter-probability matrix: alength= 4 w= 8 nsites= 1271 E= 4.5e-109 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.433517 0.000000 0.566483 0.000000 0.422502 0.000000 0.577498 log-odds matrix: alength= 4 w= 8 n= 1271 bayes= 0 E= 4.5e-109 -8.389621 2.075956 -8.236296 -8.393939 1.923262 -8.236927 -8.236296 -8.393939 -8.389621 2.075956 -8.236296 -8.393939 -8.389621 2.075956 -8.236296 -8.393939 -8.389621 -8.236927 -8.236296 1.918944 -8.389621 -8.236927 2.076587 -8.393939 -8.389621 0.871598 -8.236296 1.099917 -8.389621 0.834536 -8.236296 1.127662 # 5 motifs with E-value < 0.05 found. #elapsed time: 626.43 seconds