Index of /kundaje/marinovg/oak/various/papers/2018-ENCODE-enhancers/2016-10-26-CTCF

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]ERANGE2016-10-27 07:43 442  
[ ]IDR-G1E-npeaks-aboveIDR.files2016-10-29 06:14 912  
[ ]IDR-G1E-npeaks-aboveIDR.table2016-10-29 06:15 1.6K 
[TXT]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-Rout.txt2016-10-28 04:39 1.7K 
[ ]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-em.sav.bz22016-10-28 04:39 11M 
[TXT]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-npeaks-aboveIDR.txt2016-10-28 04:39 11K 
[ ]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-overlapped-peaks.txt.bz22016-10-28 04:39 4.6M 
[ ]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-plot.ps2016-10-29 06:12 20K 
[ ]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-uri.sav.bz22016-10-28 04:29 25M 
[TXT]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-Rout.txt2016-10-28 02:45 1.5K 
[ ]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-em.sav.bz22016-10-28 02:45 5.8M 
[TXT]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-npeaks-aboveIDR.txt2016-10-28 02:45 8.9K 
[ ]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-overlapped-peaks.txt.bz22016-10-28 02:45 2.4M 
[ ]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-plot.ps2016-10-29 06:12 18K 
[ ]IDR-SPP-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-uri.sav.bz22016-10-28 02:39 19M 
[TXT]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-Rout.txt2016-10-29 04:38 1.7K 
[ ]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-em.sav.bz22016-10-29 04:38 11M 
[TXT]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-npeaks-aboveIDR.txt2016-10-29 04:38 10K 
[ ]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-overlapped-peaks.txt.bz22016-10-29 04:38 4.3M 
[ ]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-plot.ps2016-10-29 06:12 20K 
[ ]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoReps-uri.sav.bz22016-10-29 04:07 26M 
[TXT]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-Rout.txt2016-10-28 06:55 1.4K 
[ ]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-em.sav.bz22016-10-28 06:55 6.1M 
[TXT]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-npeaks-aboveIDR.txt2016-10-28 06:55 8.1K 
[ ]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-overlapped-peaks.txt.bz22016-10-28 06:55 2.5M 
[ ]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-plot.ps2016-10-29 06:12 18K 
[ ]IDR-SPP-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-uri.sav.bz22016-10-28 06:55 21M 
[TXT]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-PooledPseudoReps-Rout.txt2016-10-28 20:10 1.6K 
[ ]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-PooledPseudoReps-em.sav.bz22016-10-28 20:10 7.7M 
[TXT]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-PooledPseudoReps-npeaks-aboveIDR.txt2016-10-28 20:10 9.1K 
[ ]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-PooledPseudoReps-overlapped-peaks.txt.bz22016-10-28 20:10 2.9M 
[ ]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-PooledPseudoReps-plot.ps2016-10-29 06:12 20K 
[ ]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-PooledPseudoReps-uri.sav.bz22016-10-28 20:03 27M 
[TXT]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-Rout.txt2016-10-27 23:32 1.4K 
[ ]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-em.sav.bz22016-10-27 23:32 7.5M 
[TXT]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-npeaks-aboveIDR.txt2016-10-27 23:32 7.2K 
[ ]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-overlapped-peaks.txt.bz22016-10-27 23:32 2.9M 
[ ]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-plot.ps2016-10-29 06:12 19K 
[ ]IDR-SPP-G1E-CTCF-Rep1-vs-Rep2-PSU-uri.sav.bz22016-10-27 23:24 28M 
[TXT]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-PooledPseudoReps-Rout.txt2016-10-27 23:43 1.7K 
[ ]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-PooledPseudoReps-em.sav.bz22016-10-27 23:43 8.1M 
[TXT]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-PooledPseudoReps-npeaks-aboveIDR.txt2016-10-27 23:43 9.8K 
[ ]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-PooledPseudoReps-overlapped-peaks.txt.bz22016-10-27 23:43 3.1M 
[ ]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-PooledPseudoReps-plot.ps2016-10-29 06:12 20K 
[ ]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-PooledPseudoReps-uri.sav.bz22016-10-27 23:34 27M 
[TXT]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-Rout.txt2016-10-27 23:09 1.4K 
[ ]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-em.sav.bz22016-10-27 23:09 7.1M 
[TXT]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-npeaks-aboveIDR.txt2016-10-27 23:09 7.9K 
[ ]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-overlapped-peaks.txt.bz22016-10-27 23:09 2.8M 
[ ]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-plot.ps2016-10-29 06:12 19K 
[ ]IDR-SPP-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-uri.sav.bz22016-10-27 23:05 25M 
[TXT]IDR-commands.txt2016-10-26 18:17 32K 
[ ]IDR-ind-pseudoreps.condor2016-10-27 07:14 5.0K 
[ ]IDR-ind.condor2016-10-27 07:13 1.9K 
[ ]IDR-pool-pseudoreps.condor2016-10-27 07:14 2.3K 
[ ]IDR.commands.config2016-10-26 18:17 1.3K 
[ ]NA_peaks.encodePeak2016-10-27 19:59 40  
[TXT]README.txt2016-10-27 19:59 7.5K 
[ ]Rscript.condor2016-10-26 18:09 3.5K 
[ ]SAMstats-A549-1PCR_Input-V0416101_Rep1-HA.36mers.unique2016-10-26 20:00 155  
[ ]SAMstats-A549-1PCR_Input-V0416101_Rep2-HA.36mers.unique2016-10-26 19:44 155  
[ ]SAMstats-A549-1PCR_Input-V0416101_Rep3-HA.36mers.unique2016-10-26 19:39 155  
[ ]SAMstats-A549-100nM-Dex-1h-1PCR_Input-Rep1-HA.36mers.unique2016-10-26 19:34 155  
[ ]SAMstats-A549-100nM-Dex-1h-1PCR_Input-Rep1_V0422111-HA.36mers.unique2016-10-26 20:14 155  
[ ]SAMstats-A549-100nM-Dex-1h-CTCF-Rep1-HA.36mers.unique2016-10-26 19:49 155  
[ ]SAMstats-A549-100nM-Dex-1h-CTCF-Rep2-HA.36mers.unique2016-10-26 19:36 155  
[ ]SAMstats-A549-EtOH-1h-1PCR_Input-Rep1-HA.36mers.unique2016-10-26 19:42 155  
[ ]SAMstats-A549-EtOH-1h-1PCR_Input-V0416101-HA.36mers.unique2016-10-26 19:50 155  
[ ]SAMstats-A549-EtOH-1h-1PCR_Input-V0416101_Rep1-HA.36mers.unique2016-10-26 20:15 155  
[ ]SAMstats-A549-EtOH-1h-CTCF-Rep1-HA.36mers.unique2016-10-26 19:49 155  
[ ]SAMstats-A549-EtOH-1h-CTCF-Rep2-HA.36mers.unique2016-10-26 19:34 155  
[ ]SAMstats-G1E-CTCF-Rep1-PSU.36mers.unique2016-10-26 19:30 155  
[ ]SAMstats-G1E-CTCF-Rep2-PSU.36mers.unique2016-10-26 19:45 155  
[ ]SAMstats-G1E-ER4-CTCF-Rep1-PSU.36mers.unique2016-10-26 19:33 155  
[ ]SAMstats-G1E-ER4-CTCF-Rep2-PSU.36mers.unique2016-10-26 19:29 155  
[ ]SAMstats.files2016-10-26 18:02 1.3K 
[ ]SAMstats.table2016-10-26 22:34 1.1K 
[DIR]SPP-300K-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-Pooled/2016-10-29 06:12 -  
[DIR]SPP-300K-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoRep1/2016-10-29 06:12 -  
[DIR]SPP-300K-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoRep2/2016-10-29 06:12 -  
[DIR]SPP-300K-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-Rep1/2016-10-29 06:13 -  
[DIR]SPP-300K-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-Rep2/2016-10-29 06:13 -  
[DIR]SPP-300K-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-Rep2PseudoRep1/2016-10-26 22:50 -  
[DIR]SPP-300K-A549-100nM-Dex-1h-CTCF-Rep1-vs-Rep2-HA-Rep2PseudoRep2/2016-10-26 22:50 -  
[DIR]SPP-300K-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-Pooled/2016-10-29 06:13 -  
[DIR]SPP-300K-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoRep1/2016-10-29 06:13 -  
[DIR]SPP-300K-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-PooledPseudoRep2/2016-10-29 06:13 -  
[DIR]SPP-300K-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-Rep1/2016-10-29 06:13 -  
[DIR]SPP-300K-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-Rep2/2016-10-29 06:13 -  
[DIR]SPP-300K-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-Rep2PseudoRep1/2016-10-26 22:50 -  
[DIR]SPP-300K-A549-EtOH-1h-CTCF-Rep1-vs-Rep2-HA-Rep2PseudoRep2/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-CTCF-Rep1-vs-Rep2-PSU-Pooled/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-CTCF-Rep1-vs-Rep2-PSU-PooledPseudoRep1/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-CTCF-Rep1-vs-Rep2-PSU-PooledPseudoRep2/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-CTCF-Rep1-vs-Rep2-PSU-Rep1/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-CTCF-Rep1-vs-Rep2-PSU-Rep2/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-CTCF-Rep1-vs-Rep2-PSU-Rep2PseudoRep1/2016-10-26 22:50 -  
[DIR]SPP-300K-G1E-CTCF-Rep1-vs-Rep2-PSU-Rep2PseudoRep2/2016-10-26 22:50 -  
[DIR]SPP-300K-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-Pooled/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-PooledPseudoRep1/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-PooledPseudoRep2/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-Rep1/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-Rep2/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-Rep2PseudoRep1/2016-10-29 06:13 -  
[DIR]SPP-300K-G1E-ER4-CTCF-Rep1--vs-Rep2-PSU-Rep2PseudoRep2/2016-10-26 22:50 -  
[ ]SPP-ind-pseudoreps.condor2016-10-26 22:55 5.9K 
[ ]SPP-ind-rerun.condor2016-10-27 14:22 643  
[ ]SPP-ind.condor2016-10-27 08:59 1.6K 
[ ]SPP-pooled-pseudoreps-rerun.condor2016-10-27 18:08 699  
[ ]SPP-pooled-pseudoreps.condor2016-10-26 22:55 2.8K 
[ ]SPP-pooled.condor2016-10-26 22:55 1.4K 
[ ]batch-consistency-analysis.r2016-10-27 19:59 5.6K 
[ ]batch-consistency-plot-merged2.r2016-10-27 19:59 8.2K 
[ ]batch-consistency-plot.r2016-10-27 19:59 2.5K 
[ ]findall.log2016-10-27 07:34 9.2K 
[ ]functions-all-clayton-12-13.r2016-10-27 19:59 94K 
[TXT]genome_table.txt2016-10-27 19:59 376  
[TXT]idrOverlap2npk.sh2016-10-27 19:59 1.3K 
[ ]map.condor2016-10-26 17:58 9.5K 
[TXT]peakCallingPipelineForIdr.txt2016-10-27 19:59 349  
[TXT]submit.idrmerge.lsf.sh2016-10-27 19:59 2.5K 
[TXT]submit.idrpair.lsf.sh2016-10-27 19:59 2.8K 
[ ]z2016-10-27 07:50 2.5K 
[ ]zz-region-stats-ERANGE2016-10-27 07:43 579  
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