is.broadpeak FALSE 
read C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  96571 peaks
 96571 peaks are left after cleaning
 C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-uri.sav 
EM is done

EM is saved at: IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-em.sav 
EM estimation for the following files
C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_RED-5933_IP_E2-17872.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
C2C12-myoblast-H3K27ac-AM_39113_31814008-RT_Fix_BLK-5933_IP_D2-17871.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
$p
[1] 0.6715482

$rho1
[1] 0.8814808

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-C2C12-myoblast-H3K27ac-17871-vs-17872-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 16976.14

$x.mean2
[1] 33785.23

$y.mean1
[1] 17064.98

$y.mean2
[1] 33603.9

$x.sd1
[1] 11419.89

$x.sd2
[1] 7573.471

$y.sd1
[1] 11457.49

$y.sd2
[1] 7851.656