******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= mm10.Cross_Differentiation_expanded.liftOver.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:45311444-45312243 1.0000 799 chr11:95990733-95991563 1.0000 830 chr15:34795064-34795760 1.0000 696 chr15:25915728-25916468 1.0000 740 chr15:85698553-85699119 1.0000 566 chr15:77888063-77888703 1.0000 640 chr16:30063016-30064679 1.0000 1663 chr16:47842998-47843731 1.0000 733 chr1:134092570-134093219 1.0000 649 chr1:135770524-135771765 1.0000 1241 chr1:75344260-75345310 1.0000 1050 chr1:92787053-92787878 1.0000 825 chr1:91413901-91414660 1.0000 759 chr1:134091600-134093367 1.0000 1767 chr1:135668102-135668958 1.0000 856 chr1:134098990-134100352 1.0000 1362 chr1:135933277-135934547 1.0000 1270 chr1:134195091-134196873 1.0000 1782 chr1:135843983-135845220 1.0000 1237 chr1:134244219-134245778 1.0000 1559 chr1:135534977-135536185 1.0000 1208 chr1:134079056-134080037 1.0000 981 chr1:135861587-135863192 1.0000 1605 chr1:75361825-75362213 1.0000 388 chr1:136228027-136229131 1.0000 1104 chr1:92787053-92787745 1.0000 692 chr1:177441252-177442123 1.0000 871 chr3:88138276-88138625 1.0000 349 chr3:88138602-88139038 1.0000 436 chr3:87982114-87984371 1.0000 2257 chr4:43038998-43039732 1.0000 734 chr4:74251643-74252226 1.0000 583 chr6:72259181-72260517 1.0000 1336 chr6:108668244-108668981 1.0000 737 chr7:45460723-45461396 1.0000 673 chr8:123882342-123885242 1.0000 2900 chr8:123884590-123885381 1.0000 791 chr8:126583914-126584586 1.0000 672 chrX:167091787-167092426 1.0000 639 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme mm10.Cross_Differentiation_expanded.liftOver.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o mm10.Cross_Differentiation_expanded.liftOver.meme.maxw25 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 39 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 39980 N= 39 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.226 C 0.279 G 0.273 T 0.222 Background letter frequencies (from dataset with add-one prior applied): A 0.226 C 0.279 G 0.273 T 0.222 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 24 sites = 33 llr = 405 E-value = 1.4e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :2511:3:442423:432132522 pos.-specific C 25:::1:1::111123:1325::2 probability G 62:989692685668277553186 matrix T 215:1:1131::11:2:111:4:: bits 2.2 2.0 1.7 1.5 * Relative 1.3 * * * * * Entropy 1.1 **** * * * * * (17.7 bits) 0.9 ****** * * * * 0.7 * ****** *** * * ** 0.4 * ************* ** *** 0.2 *************** ******** 0.0 ------------------------ Multilevel GCTGGGGGAGGGGGGAGGGGCAGG consensus CGA A TA A A CA CAGT A sequence G G A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ chr16:30063016-30064679 842 2.64e-10 GTCCCGGCGG GCTGGGGGTGGGGGGTGGCGATGG GGGGTGGGGA chr11:95990733-95991563 376 6.89e-09 GGTGGCAGCA GCTGGGGGAGGAGGGGAGCCCTGC AGGCCGCGCC chr1:134091600-134093367 1456 1.41e-08 CCCCGCCCTG GCTGGGACAGGAGGGCGGGGCTGC TGCGCAGGGC chr1:134092570-134093219 486 1.41e-08 CCCCGCCCTG GCTGGGACAGGAGGGCGGGGCTGC TGCGCAGGGC chr1:135861587-135863192 363 3.57e-08 GCTCACTTGA CCAAGGGGAGGGGAGCAGGAGAGG AGAAATCACA chr3:88138602-88139038 123 4.59e-08 CACGTGACCC GGAGGGGGTGGAGGCAGAAGCTGG GGGTGGGGGG chr1:92787053-92787745 182 4.59e-08 CAGCTGTGTC TATGGGGGAAGAGAGGGCCGCAGG GGCTGTGGGG chr1:134079056-134080037 294 4.59e-08 GGACTCCCGT GCTGTGGGAGGCAGGCGGGAGAGG GCCTTGGACC chr1:92787053-92787878 182 4.59e-08 CAGCTGTGTC TATGGGGGAAGAGAGGGCCGCAGG GGCTGTGGGG chr4:74251643-74252226 269 5.86e-08 CTCCGAGCCG GGAGGGAGGGGAGCGCGGCGGAGG GATTCCGTGG chr3:88138276-88138625 213 1.48e-07 GAGAAGTTGG GATGGGGGTTGGGGGGAGCGGAGC AAGAAGGCGA chr1:136228027-136229131 420 2.29e-07 GTTAGCCAGA GCAGGGGTGGGGAGGGGAGGGTGG AATCCAGGCG chr1:135534977-135536185 1108 2.29e-07 GAGTGGGCCT GTAGGGGGTAAGGGGAGGAGAAAG GTCTCAACAA chr3:87982114-87984371 1548 2.55e-07 CCCATCTGTG TGTGTGGGGGGGGGCAGGGAGAGG GCTAAATTCT chr1:135770524-135771765 631 6.92e-07 GGTGGGGTGG GGAGGCTGAGGGGAGAAGGGATGG GCTCGTTCTG chr1:134244219-134245778 99 8.35e-07 GCCTACAGAG GCTGAGGGAGGGCAGAGAGGCTAC AGATCAACGT chr15:25915728-25916468 541 8.35e-07 CTCTCCTGTG GCTGTGGTAAAATGGAGGGACAGG GCTGTGCTGA chr15:34795064-34795760 445 9.16e-07 GTCTCCCACA GAAGAGAGAAGGAAGAAAGCCAGG CCCAGAGGTC chr8:123882342-123885242 1298 1.10e-06 ATCTCCTGAC TCAGGGGGAAGCTGCAGGCAGAGA CGATGACTTG chr8:126583914-126584586 446 1.44e-06 TGGGGCGGGG CGTGGGGGTACAGAGTGGAGCTGA GAGCGCGTGG chr1:75344260-75345310 167 1.71e-06 TCTGGCCGGG GCTGGGGGGAGGTGCCAGGAGAAA GAATTGCAAA chr10:45311444-45312243 506 2.02e-06 AGTGCCATGC TCAGGGTGGAGAGACAGAGCCTGG TAGCTGCTTA chr1:135933277-135934547 831 2.60e-06 GTGAAGGACT CATGGGGGTGGGGGGAGGGCGCAA GCAGAAGCCA chr4:43038998-43039732 470 2.82e-06 ACTTGTTAGA CCTGGGAGGTGGGAGAGGTTGTGG TACAAGAAGA chr15:77888063-77888703 549 3.05e-06 ACCCCTGTCA GCTGGGAGGAGGATGTGGGAAGGC TTCCTGGAGA chr6:108668244-108668981 489 5.26e-06 CGAGGGCACG GGAGGGAGCGCAGGGTGGGGTAGG AGCTGGGTTT chr1:135843983-135845220 227 5.26e-06 GGACTTGCTT CTTGGGGGTAACAGGAGGCGAGGG GAGACAGAAT chr1:177441252-177442123 84 6.10e-06 AAGTTTATCT GAAGGGAGAGAGGTGCAACACAAA ATAAGGTCTC chr1:134098990-134100352 591 6.56e-06 CTGAGGCTTG GGAAGGGGAGACCGGCAGGAAAGA AAGTCAGAAT chr16:47842998-47843731 53 9.37e-06 GAAGGAGACG CCAGAGGGTGGAGGGTGTTCATGA TATATCTCCA chr7:45460723-45461396 277 1.07e-05 CTGAGCTCAG CTAGGCAGTGGGGCGGGCGGCAGG CCACACCCGG chr6:72259181-72260517 16 1.50e-05 GGGGTTAGGG GTAAAGGGTGGACTGGAGAGCTGG CTCAGCAGTT chr1:134195091-134196873 402 1.93e-05 AGTCAAGGCC TCTAGGAGGAGAAGGCATCTCAGC CACAGAAGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:30063016-30064679 2.6e-10 841_[+1]_798 chr11:95990733-95991563 6.9e-09 375_[+1]_431 chr1:134091600-134093367 1.4e-08 1455_[+1]_288 chr1:134092570-134093219 1.4e-08 485_[+1]_140 chr1:135861587-135863192 3.6e-08 362_[+1]_1219 chr3:88138602-88139038 4.6e-08 122_[+1]_290 chr1:92787053-92787745 4.6e-08 181_[+1]_487 chr1:134079056-134080037 4.6e-08 293_[+1]_664 chr1:92787053-92787878 4.6e-08 181_[+1]_620 chr4:74251643-74252226 5.9e-08 268_[+1]_291 chr3:88138276-88138625 1.5e-07 212_[+1]_113 chr1:136228027-136229131 2.3e-07 419_[+1]_661 chr1:135534977-135536185 2.3e-07 1107_[+1]_77 chr3:87982114-87984371 2.5e-07 1547_[+1]_686 chr1:135770524-135771765 6.9e-07 630_[+1]_587 chr1:134244219-134245778 8.3e-07 98_[+1]_1437 chr15:25915728-25916468 8.3e-07 540_[+1]_176 chr15:34795064-34795760 9.2e-07 444_[+1]_228 chr8:123882342-123885242 1.1e-06 1297_[+1]_1579 chr8:126583914-126584586 1.4e-06 445_[+1]_203 chr1:75344260-75345310 1.7e-06 166_[+1]_860 chr10:45311444-45312243 2e-06 505_[+1]_270 chr1:135933277-135934547 2.6e-06 830_[+1]_416 chr4:43038998-43039732 2.8e-06 469_[+1]_241 chr15:77888063-77888703 3.1e-06 548_[+1]_68 chr6:108668244-108668981 5.3e-06 488_[+1]_225 chr1:135843983-135845220 5.3e-06 226_[+1]_987 chr1:177441252-177442123 6.1e-06 83_[+1]_764 chr1:134098990-134100352 6.6e-06 590_[+1]_748 chr16:47842998-47843731 9.4e-06 52_[+1]_657 chr7:45460723-45461396 1.1e-05 276_[+1]_373 chr6:72259181-72260517 1.5e-05 15_[+1]_1297 chr1:134195091-134196873 1.9e-05 401_[+1]_1357 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=24 seqs=33 chr16:30063016-30064679 ( 842) GCTGGGGGTGGGGGGTGGCGATGG 1 chr11:95990733-95991563 ( 376) GCTGGGGGAGGAGGGGAGCCCTGC 1 chr1:134091600-134093367 ( 1456) GCTGGGACAGGAGGGCGGGGCTGC 1 chr1:134092570-134093219 ( 486) GCTGGGACAGGAGGGCGGGGCTGC 1 chr1:135861587-135863192 ( 363) CCAAGGGGAGGGGAGCAGGAGAGG 1 chr3:88138602-88139038 ( 123) GGAGGGGGTGGAGGCAGAAGCTGG 1 chr1:92787053-92787745 ( 182) TATGGGGGAAGAGAGGGCCGCAGG 1 chr1:134079056-134080037 ( 294) GCTGTGGGAGGCAGGCGGGAGAGG 1 chr1:92787053-92787878 ( 182) TATGGGGGAAGAGAGGGCCGCAGG 1 chr4:74251643-74252226 ( 269) GGAGGGAGGGGAGCGCGGCGGAGG 1 chr3:88138276-88138625 ( 213) GATGGGGGTTGGGGGGAGCGGAGC 1 chr1:136228027-136229131 ( 420) GCAGGGGTGGGGAGGGGAGGGTGG 1 chr1:135534977-135536185 ( 1108) GTAGGGGGTAAGGGGAGGAGAAAG 1 chr3:87982114-87984371 ( 1548) TGTGTGGGGGGGGGCAGGGAGAGG 1 chr1:135770524-135771765 ( 631) GGAGGCTGAGGGGAGAAGGGATGG 1 chr1:134244219-134245778 ( 99) GCTGAGGGAGGGCAGAGAGGCTAC 1 chr15:25915728-25916468 ( 541) GCTGTGGTAAAATGGAGGGACAGG 1 chr15:34795064-34795760 ( 445) GAAGAGAGAAGGAAGAAAGCCAGG 1 chr8:123882342-123885242 ( 1298) TCAGGGGGAAGCTGCAGGCAGAGA 1 chr8:126583914-126584586 ( 446) CGTGGGGGTACAGAGTGGAGCTGA 1 chr1:75344260-75345310 ( 167) GCTGGGGGGAGGTGCCAGGAGAAA 1 chr10:45311444-45312243 ( 506) TCAGGGTGGAGAGACAGAGCCTGG 1 chr1:135933277-135934547 ( 831) CATGGGGGTGGGGGGAGGGCGCAA 1 chr4:43038998-43039732 ( 470) CCTGGGAGGTGGGAGAGGTTGTGG 1 chr15:77888063-77888703 ( 549) GCTGGGAGGAGGATGTGGGAAGGC 1 chr6:108668244-108668981 ( 489) GGAGGGAGCGCAGGGTGGGGTAGG 1 chr1:135843983-135845220 ( 227) CTTGGGGGTAACAGGAGGCGAGGG 1 chr1:177441252-177442123 ( 84) GAAGGGAGAGAGGTGCAACACAAA 1 chr1:134098990-134100352 ( 591) GGAAGGGGAGACCGGCAGGAAAGA 1 chr16:47842998-47843731 ( 53) CCAGAGGGTGGAGGGTGTTCATGA 1 chr7:45460723-45461396 ( 277) CTAGGCAGTGGGGCGGGCGGCAGG 1 chr6:72259181-72260517 ( 16) GTAAAGGGTGGACTGGAGAGCTGG 1 chr1:134195091-134196873 ( 402) TCTAGGAGGAGAAGGCATCTCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 39083 bayes= 10.9756 E= 1.4e-017 -1169 -39 115 -29 -31 80 -36 -87 101 -1169 -1169 130 -90 -1169 169 -1169 -90 -1169 153 -129 -1169 -220 178 -1169 42 -1169 122 -187 -1169 -220 169 -187 91 -320 -17 45 69 -1169 108 -187 -58 -220 153 -1169 91 -120 73 -1169 -31 -162 122 -129 27 -220 108 -129 -1169 -88 164 -1169 69 -3 -36 -55 42 -1169 135 -1169 -31 -162 129 -187 -90 12 92 -187 27 -88 92 -187 -9 71 15 -287 119 -320 -217 83 -58 -1169 164 -1169 -9 -39 108 -1169 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 33 E= 1.4e-017 0.000000 0.212121 0.606061 0.181818 0.181818 0.484848 0.212121 0.121212 0.454545 0.000000 0.000000 0.545455 0.121212 0.000000 0.878788 0.000000 0.121212 0.000000 0.787879 0.090909 0.000000 0.060606 0.939394 0.000000 0.303030 0.000000 0.636364 0.060606 0.000000 0.060606 0.878788 0.060606 0.424242 0.030303 0.242424 0.303030 0.363636 0.000000 0.575758 0.060606 0.151515 0.060606 0.787879 0.000000 0.424242 0.121212 0.454545 0.000000 0.181818 0.090909 0.636364 0.090909 0.272727 0.060606 0.575758 0.090909 0.000000 0.151515 0.848485 0.000000 0.363636 0.272727 0.212121 0.151515 0.303030 0.000000 0.696970 0.000000 0.181818 0.090909 0.666667 0.060606 0.121212 0.303030 0.515152 0.060606 0.272727 0.151515 0.515152 0.060606 0.212121 0.454545 0.303030 0.030303 0.515152 0.030303 0.060606 0.393939 0.151515 0.000000 0.848485 0.000000 0.212121 0.212121 0.575758 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [GC][CG][TA]GGG[GA]G[ATG][GA]G[GA]G[GA]G[ACG][GA]G[GC][GA][CGA][AT]G[GAC] -------------------------------------------------------------------------------- Time 54.05 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 21 sites = 36 llr = 404 E-value = 1.6e-017 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 1:5:231:11:::21:21:11 pos.-specific C 8a23425a35a4868738965 probability G 1:25311:13:::1:::1:11 matrix T ::22143:52:522135:124 bits 2.2 2.0 1.7 * * * 1.5 * * * Relative 1.3 * * * * Entropy 1.1 * * * * * * (16.2 bits) 0.9 ** * *** ** ** 0.7 ** * *** ***** 0.4 ** * * ** *********** 0.2 **** **************** 0.0 --------------------- Multilevel CCAGCTCCTCCTCCCCTCCCC consensus CGAT CG CTT TC T sequence T A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr8:123884590-123885381 428 1.97e-09 CAGCTGCTGC CCGGCTCCTCCTCCCCACCCC ACCCCGCCCC chr8:123882342-123885242 2676 1.97e-09 CAGCTGCTGC CCGGCTCCTCCTCCCCACCCC ACCCCGCCCC chr8:126583914-126584586 136 1.15e-08 CCCCTCCTTC CCCCAACCTCCCCCCCTCCCC CAGCACACGC chr1:91413901-91414660 154 6.91e-08 CAACCCCTCT CCACGCTCACCTCCCTTCCCC GCGAGTCCCC chr1:135861587-135863192 809 9.28e-08 CTGTGACTAG ACCGCTCCTCCCCTCCTCCCC CTTACCAAGG chr3:87982114-87984371 193 1.23e-07 GGTGTCACCG CCCTGTCCCCCCCTCCCCCCC AGTTCTGCTT chr1:75361825-75362213 135 1.62e-07 TGAGACAGAG CCACTTCCTGCTCCACCCCCC CGTAGGCGGG chr1:135534977-135536185 792 3.10e-07 GCAACACAGA CCACTTTCCCCTTACTTCCCT GACTGCCTCC chr1:134244219-134245778 1197 3.52e-07 GCTCTCTGGG CCTCCACCCCCCCCTTTCCCC TGTTCCCTCT chr1:92787053-92787745 141 3.98e-07 CTTCCTCCTG CCAGGCACAGCTCCCCACCCT CAGGCAGGAC chr1:92787053-92787878 141 3.98e-07 CTTCCTCCTG CCAGGCACAGCTCCCCACCCT CAGGCAGGAC chr1:135668102-135668958 14 6.40e-07 ACACTTCTGC CCTGAATCTGCTCACTTCCAT TGCTCCCAGG chr1:134079056-134080037 831 7.17e-07 TCCATCAGTT CCCTGCCCCTCCCTCTTCCCT GATTGTTTTC chr11:95990733-95991563 481 8.03e-07 GGAGGGAAGC CCAGCGCCCCCCCCCCACCCA GCCCCTGGGT chr1:135770524-135771765 508 1.12e-06 GGGGCTGCTG CCACCAACTTCCCCCCTGCTC TGGCAGCCAG chr4:43038998-43039732 4 1.24e-06 ATG ACCTGTTCTCCTTTCTTCCCC TCCTAGTCTC chr16:30063016-30064679 1213 1.53e-06 CCGGCCGCCG CCGGCCCCCGCCTCCCTGCCC CCGGGGCGCG chr6:72259181-72260517 368 2.08e-06 GAGCCCAGGG CCAGCCCCGCCTCTCTCCCTT GCGCTTGGTT chr15:85698553-85699119 45 2.30e-06 TCACTATTTC CCAGAATCCTCTCTCTTCCTG CCGGTGTCCC chr15:77888063-77888703 171 2.53e-06 GCAGCTTTAT CCTGACCCGACTCCCCTCCCC CAACCTCTGC chr1:134098990-134100352 1031 3.07e-06 AACACCTGCT CCATCACCACCTCTCCCACAC AGCGCAGGCC chrX:167091787-167092426 457 3.37e-06 TGCAGTCATT GCATCTCCTCCTCCCTCCTAT AGCACTGCAA chr1:177441252-177442123 711 3.37e-06 CCGCCGCGGT CCGCGAGCTCCGCCCCTCCCC GAGAAGACCA chr16:47842998-47843731 709 3.70e-06 CCCATATTTT CCTTGTTCTCCTTCTCCACCT TCTG chr1:134091600-134093367 1032 4.06e-06 GGATACCAGG CCAGGTTCCTCCCCATCGCCC AGTGACCACT chr1:134092570-134093219 62 4.06e-06 GGATACCAGG CCAGGTTCCTCCCCATCGCCC AGTGACCACT chr1:135933277-135934547 447 4.85e-06 TAACACAGCT CCAGTTTCCACTCGCCTCCAT CCACACTCAG chr1:134195091-134196873 1540 6.30e-06 GCTGTCGGGT GCAGAACCTGCCTCCCTCCAG GGGGAGACAG chr4:74251643-74252226 244 8.10e-06 CGCGCCCGCG CCGCCTCCCGCCCACCTCCGA GCCGGGAGGG chr3:88138602-88139038 194 1.63e-05 GCCCCCACCC CCACATCCTGCCCACCCAACT GCAGCTGCCA chr10:45311444-45312243 363 3.03e-05 ATGGCAGAGG CCCTTTCCTGCCCATCACCTG CTCCTGTCAG chr15:25915728-25916468 391 3.91e-05 TGGGAGCCAG GCGCCATCTGCTTTCCACTTT AGTGGAGTTG chr1:135843983-135845220 53 4.97e-05 ATAGGAACAA ACCCCAGCTGCTCCACTGCTC ATGTCAGTGT chr1:75344260-75345310 552 4.97e-05 CCCTCCTCTC CTTGCAGCCCCTCCCCTATCT TGAGTGGCAG chr1:136228027-136229131 966 5.27e-05 GAAGCAGGCA GCTGGGCCTTCCTGCCACCCT CCCCAGAAGG chr15:34795064-34795760 164 9.55e-05 TTGCTAAGAT CCATGTACTCCCTATCTCTGA GCCTGGAAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:123884590-123885381 2e-09 427_[+2]_343 chr8:123882342-123885242 2e-09 2675_[+2]_204 chr8:126583914-126584586 1.2e-08 135_[+2]_516 chr1:91413901-91414660 6.9e-08 153_[+2]_585 chr1:135861587-135863192 9.3e-08 808_[+2]_776 chr3:87982114-87984371 1.2e-07 192_[+2]_2044 chr1:75361825-75362213 1.6e-07 134_[+2]_233 chr1:135534977-135536185 3.1e-07 791_[+2]_396 chr1:134244219-134245778 3.5e-07 1196_[+2]_342 chr1:92787053-92787745 4e-07 140_[+2]_531 chr1:92787053-92787878 4e-07 140_[+2]_664 chr1:135668102-135668958 6.4e-07 13_[+2]_822 chr1:134079056-134080037 7.2e-07 830_[+2]_130 chr11:95990733-95991563 8e-07 480_[+2]_329 chr1:135770524-135771765 1.1e-06 507_[+2]_713 chr4:43038998-43039732 1.2e-06 3_[+2]_710 chr16:30063016-30064679 1.5e-06 1212_[+2]_430 chr6:72259181-72260517 2.1e-06 367_[+2]_948 chr15:85698553-85699119 2.3e-06 44_[+2]_501 chr15:77888063-77888703 2.5e-06 170_[+2]_449 chr1:134098990-134100352 3.1e-06 1030_[+2]_311 chrX:167091787-167092426 3.4e-06 456_[+2]_162 chr1:177441252-177442123 3.4e-06 710_[+2]_140 chr16:47842998-47843731 3.7e-06 708_[+2]_4 chr1:134091600-134093367 4.1e-06 1031_[+2]_715 chr1:134092570-134093219 4.1e-06 61_[+2]_567 chr1:135933277-135934547 4.9e-06 446_[+2]_803 chr1:134195091-134196873 6.3e-06 1539_[+2]_222 chr4:74251643-74252226 8.1e-06 243_[+2]_319 chr3:88138602-88139038 1.6e-05 193_[+2]_222 chr10:45311444-45312243 3e-05 362_[+2]_416 chr15:25915728-25916468 3.9e-05 390_[+2]_329 chr1:135843983-135845220 5e-05 52_[+2]_1164 chr1:75344260-75345310 5e-05 551_[+2]_478 chr1:136228027-136229131 5.3e-05 965_[+2]_118 chr15:34795064-34795760 9.5e-05 163_[+2]_512 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=36 chr8:123884590-123885381 ( 428) CCGGCTCCTCCTCCCCACCCC 1 chr8:123882342-123885242 ( 2676) CCGGCTCCTCCTCCCCACCCC 1 chr8:126583914-126584586 ( 136) CCCCAACCTCCCCCCCTCCCC 1 chr1:91413901-91414660 ( 154) CCACGCTCACCTCCCTTCCCC 1 chr1:135861587-135863192 ( 809) ACCGCTCCTCCCCTCCTCCCC 1 chr3:87982114-87984371 ( 193) CCCTGTCCCCCCCTCCCCCCC 1 chr1:75361825-75362213 ( 135) CCACTTCCTGCTCCACCCCCC 1 chr1:135534977-135536185 ( 792) CCACTTTCCCCTTACTTCCCT 1 chr1:134244219-134245778 ( 1197) CCTCCACCCCCCCCTTTCCCC 1 chr1:92787053-92787745 ( 141) CCAGGCACAGCTCCCCACCCT 1 chr1:92787053-92787878 ( 141) CCAGGCACAGCTCCCCACCCT 1 chr1:135668102-135668958 ( 14) CCTGAATCTGCTCACTTCCAT 1 chr1:134079056-134080037 ( 831) CCCTGCCCCTCCCTCTTCCCT 1 chr11:95990733-95991563 ( 481) CCAGCGCCCCCCCCCCACCCA 1 chr1:135770524-135771765 ( 508) CCACCAACTTCCCCCCTGCTC 1 chr4:43038998-43039732 ( 4) ACCTGTTCTCCTTTCTTCCCC 1 chr16:30063016-30064679 ( 1213) CCGGCCCCCGCCTCCCTGCCC 1 chr6:72259181-72260517 ( 368) CCAGCCCCGCCTCTCTCCCTT 1 chr15:85698553-85699119 ( 45) CCAGAATCCTCTCTCTTCCTG 1 chr15:77888063-77888703 ( 171) CCTGACCCGACTCCCCTCCCC 1 chr1:134098990-134100352 ( 1031) CCATCACCACCTCTCCCACAC 1 chrX:167091787-167092426 ( 457) GCATCTCCTCCTCCCTCCTAT 1 chr1:177441252-177442123 ( 711) CCGCGAGCTCCGCCCCTCCCC 1 chr16:47842998-47843731 ( 709) CCTTGTTCTCCTTCTCCACCT 1 chr1:134091600-134093367 ( 1032) CCAGGTTCCTCCCCATCGCCC 1 chr1:134092570-134093219 ( 62) CCAGGTTCCTCCCCATCGCCC 1 chr1:135933277-135934547 ( 447) CCAGTTTCCACTCGCCTCCAT 1 chr1:134195091-134196873 ( 1540) GCAGAACCTGCCTCCCTCCAG 1 chr4:74251643-74252226 ( 244) CCGCCTCCCGCCCACCTCCGA 1 chr3:88138602-88139038 ( 194) CCACATCCTGCCCACCCAACT 1 chr10:45311444-45312243 ( 363) CCCTTTCCTGCCCATCACCTG 1 chr15:25915728-25916468 ( 391) GCGCCATCTGCTTTCCACTTT 1 chr1:135843983-135845220 ( 53) ACCCCAGCTGCTCCACTGCTC 1 chr1:75344260-75345310 ( 552) CTTGCAGCCCCTCCCCTATCT 1 chr1:136228027-136229131 ( 966) GCTGGGCCTTCCTGCCACCCT 1 chr15:34795064-34795760 ( 164) CCATGTACTCCCTATCTCTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 39200 bayes= 10.9359 E= 1.6e-017 -144 153 -130 -1181 -1181 180 -1181 -300 106 -52 -71 -41 -1181 13 79 0 -44 48 29 -100 43 -52 -230 100 -102 92 -171 32 -1181 184 -1181 -1181 -102 26 -230 117 -202 76 16 -41 -1181 184 -1181 -1181 -1181 67 -329 125 -1181 148 -1181 0 -44 100 -230 0 -102 148 -1181 -100 -1181 132 -1181 46 -2 -16 -1181 125 -102 143 -98 -1181 -302 163 -1181 -100 -70 120 -230 -41 -144 76 -171 70 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 36 E= 1.6e-017 0.083333 0.805556 0.111111 0.000000 0.000000 0.972222 0.000000 0.027778 0.472222 0.194444 0.166667 0.166667 0.000000 0.305556 0.472222 0.222222 0.166667 0.388889 0.333333 0.111111 0.305556 0.194444 0.055556 0.444444 0.111111 0.527778 0.083333 0.277778 0.000000 1.000000 0.000000 0.000000 0.111111 0.333333 0.055556 0.500000 0.055556 0.472222 0.305556 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 0.444444 0.027778 0.527778 0.000000 0.777778 0.000000 0.222222 0.166667 0.555556 0.055556 0.222222 0.111111 0.777778 0.000000 0.111111 0.000000 0.694444 0.000000 0.305556 0.222222 0.250000 0.000000 0.527778 0.111111 0.750000 0.138889 0.000000 0.027778 0.861111 0.000000 0.111111 0.138889 0.638889 0.055556 0.166667 0.083333 0.472222 0.083333 0.361111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- CCA[GCT][CG][TA][CT]C[TC][CG]C[TC][CT][CT]C[CT][TCA]CCC[CT] -------------------------------------------------------------------------------- Time 107.26 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 25 sites = 34 llr = 398 E-value = 1.3e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 11:::222222::3:::1::212:1 pos.-specific C :24362244::3a236724139432 probability G 32221:211132::1:::411:11: matrix T 554536443755:564382741368 bits 2.2 2.0 1.7 * 1.5 * Relative 1.3 * Entropy 1.1 * *** * * (16.9 bits) 0.9 * * * *** * * ** 0.7 ** ********* * * ** 0.4 * **** *********** * ** 0.2 ****** ****************** 0.0 ------------------------- Multilevel TTCTCTTTCTTTCTTCCTCTTCCTT consensus GGTCT CCTAGC ACTT G C TC sequence G A A A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr1:135534977-135536185 872 8.36e-13 GAGCCAACTC TTTTCTTTCTTTCTTTCTTTCCTTT TTTTTTTGTT chr1:134195091-134196873 326 3.52e-10 GTCTGAGACC TTCTCCATCTTCCTTCTTGTTCCTT GAGGTGATGG chr1:135770524-135771765 1086 1.09e-08 TAATTGTTCG TTCTCTCTCTGTCTCTCTCTACCGT GCTTATGTTT chr1:134079056-134080037 854 1.92e-08 TCTTCCCTGA TTGTTTTCCTTCCTTTTTGTGCACT GAGGCTTTTG chr3:88138276-88138625 17 2.20e-08 CCTTCTGAAT GTCTCTGCAATTCTTCCTGTTCCTA TAGTTTCTAA chr11:95990733-95991563 714 6.24e-08 GGACCGGGAC TTTGCCCTTTGTCTCCCTCTCCTCT CCCTCTGCAG chr3:87982114-87984371 1836 1.02e-07 GAACCAGTGC TTCTTCTTCTAGCTTCCCCTGCTTT CTCCACCCTG chr1:75361825-75362213 178 1.29e-07 TTCTGCTGCT TTTTTTTTTTTTCCCCCTGGGCCTC TTGTTCTACC chr15:25915728-25916468 515 1.45e-07 GGTCCTGTGA GATCCATCATTTCTTTCTCTCCTGT GGCTGTGGTA chr15:34795064-34795760 487 3.57e-07 TCCCTGGCTT AACCCTCACTGTCCTCCTGTACTTT GCCTGAGGGA chr4:43038998-43039732 511 4.91e-07 AGAACACCTA GGCTCATTCTATCCTTCCCTTCACT CTCAAGACAC chr10:45311444-45312243 165 5.44e-07 ACTGTGTTAG GTTGCTAGATTTCATCTTCTCCATC TGTAGCTCAA chr1:92787053-92787745 52 6.04e-07 AATGCTACCA AGGTCATCCTGCCAGCCTCTTCCTT CTGACGCTTT chr1:92787053-92787878 52 6.04e-07 AATGCTACCA AGGTCATCCTGCCAGCCTCTTCCTT CTGACGCTTT chr1:134244219-134245778 780 8.18e-07 CTAAGCACTG ATGTTTGCATAGCTTTTTGGCCCTT CCCACCCTAA chr1:135843983-135845220 697 9.04e-07 GATGGCATCC TGTCTCCCTAATCTGTCTGTCCCTT CAGAATGTTG chr8:123884590-123885381 536 1.33e-06 CTCTCCTCAC TCCCTTCCCTTCCCTCTCCTTCCTC CGCCCCTACC chr8:123882342-123885242 2784 1.33e-06 CTCTCCTCAC TCCCTTCCCTTCCCTCTCCTTCCTC CGCCCCTACC chr1:134091600-134093367 1149 1.47e-06 AACACCGACG TTGGCTGATATGCTCTCTGCTCTTT GGAGGAAACT chr1:134092570-134093219 179 1.47e-06 AACACCGACG TTGGCTGATATGCTCTCTGCTCTTT GGAGGAAACT chr6:72259181-72260517 1123 1.61e-06 ACGTTGAGTT GTCTTTCACAATCACTTCCTACCTT TTATACTGAG chr1:91413901-91414660 80 3.03e-06 CCGCCTAAGC GCCTCTCATTTCCCTCTAGTTCCTC CGCATCCTCT chr16:47842998-47843731 346 3.31e-06 CTTACTATGT TACTCATCGTTTCTTCCTCTCAGCT GTTTATAAGC chr7:45460723-45461396 647 4.28e-06 AGACCAAGTC CCCTTAAAATGGCTTCCTCTTCCCT TC chr4:74251643-74252226 386 5.50e-06 CCTCAGGGGA GGCCGCACTTTTCATCCCTTTCATT CGGGTGGCGT chr16:30063016-30064679 1143 9.59e-06 GAGCACAGCA GCTGCTATTTACCTTCTTGGCTTCT CCCGGGGACC chrX:167091787-167092426 257 1.04e-05 TCTGTCTGCT GATCTTGTGAGTCATCCTTTGCTCT ATTTCCCACC chr1:177441252-177442123 24 1.40e-05 AGGGCAGAAA TTTTCTACATTTCCTCTTTGCTGGT TAGGCACAAA chr15:85698553-85699119 20 1.74e-05 TCTCCCTGCA TCTCCTTTTAGTCTCTCACTATTTC CCAGAATCCT chr1:134098990-134100352 963 2.15e-05 AATATCCCTG GGTCTCTTAGGCCACTCTGTCCCCT TTGCTCATCA chr1:136228027-136229131 765 2.30e-05 GGAACTGACA TGGACTTTTTTGCACTCTGGAATTT CAGTTTTTTC chr1:135933277-135934547 292 2.64e-05 AGACCTACTC TGCGCTAGACACCATTCTTTTCACT TGACAAAGTT chr1:135861587-135863192 515 3.22e-05 CAGCGTTACT ATGTCTGGGTTTCTTCCTCCACACA ATGGCAATGA chr15:77888063-77888703 232 4.72e-05 GGTTGTTTTG TTTTGTTTTGTTTTGTCTTATCCTT TTCAGAATTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:135534977-135536185 8.4e-13 871_[+3]_312 chr1:134195091-134196873 3.5e-10 325_[+3]_1432 chr1:135770524-135771765 1.1e-08 1085_[+3]_131 chr1:134079056-134080037 1.9e-08 853_[+3]_103 chr3:88138276-88138625 2.2e-08 16_[+3]_308 chr11:95990733-95991563 6.2e-08 713_[+3]_92 chr3:87982114-87984371 1e-07 1835_[+3]_397 chr1:75361825-75362213 1.3e-07 177_[+3]_186 chr15:25915728-25916468 1.5e-07 514_[+3]_201 chr15:34795064-34795760 3.6e-07 486_[+3]_185 chr4:43038998-43039732 4.9e-07 510_[+3]_199 chr10:45311444-45312243 5.4e-07 164_[+3]_610 chr1:92787053-92787745 6e-07 51_[+3]_616 chr1:92787053-92787878 6e-07 51_[+3]_749 chr1:134244219-134245778 8.2e-07 779_[+3]_755 chr1:135843983-135845220 9e-07 696_[+3]_516 chr8:123884590-123885381 1.3e-06 535_[+3]_231 chr8:123882342-123885242 1.3e-06 2783_[+3]_92 chr1:134091600-134093367 1.5e-06 1148_[+3]_594 chr1:134092570-134093219 1.5e-06 178_[+3]_446 chr6:72259181-72260517 1.6e-06 1122_[+3]_189 chr1:91413901-91414660 3e-06 79_[+3]_655 chr16:47842998-47843731 3.3e-06 345_[+3]_363 chr7:45460723-45461396 4.3e-06 646_[+3]_2 chr4:74251643-74252226 5.5e-06 385_[+3]_173 chr16:30063016-30064679 9.6e-06 1142_[+3]_496 chrX:167091787-167092426 1e-05 256_[+3]_358 chr1:177441252-177442123 1.4e-05 23_[+3]_823 chr15:85698553-85699119 1.7e-05 19_[+3]_522 chr1:134098990-134100352 2.1e-05 962_[+3]_375 chr1:136228027-136229131 2.3e-05 764_[+3]_315 chr1:135933277-135934547 2.6e-05 291_[+3]_954 chr1:135861587-135863192 3.2e-05 514_[+3]_1066 chr15:77888063-77888703 4.7e-05 231_[+3]_384 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=25 seqs=34 chr1:135534977-135536185 ( 872) TTTTCTTTCTTTCTTTCTTTCCTTT 1 chr1:134195091-134196873 ( 326) TTCTCCATCTTCCTTCTTGTTCCTT 1 chr1:135770524-135771765 ( 1086) TTCTCTCTCTGTCTCTCTCTACCGT 1 chr1:134079056-134080037 ( 854) TTGTTTTCCTTCCTTTTTGTGCACT 1 chr3:88138276-88138625 ( 17) GTCTCTGCAATTCTTCCTGTTCCTA 1 chr11:95990733-95991563 ( 714) TTTGCCCTTTGTCTCCCTCTCCTCT 1 chr3:87982114-87984371 ( 1836) TTCTTCTTCTAGCTTCCCCTGCTTT 1 chr1:75361825-75362213 ( 178) TTTTTTTTTTTTCCCCCTGGGCCTC 1 chr15:25915728-25916468 ( 515) GATCCATCATTTCTTTCTCTCCTGT 1 chr15:34795064-34795760 ( 487) AACCCTCACTGTCCTCCTGTACTTT 1 chr4:43038998-43039732 ( 511) GGCTCATTCTATCCTTCCCTTCACT 1 chr10:45311444-45312243 ( 165) GTTGCTAGATTTCATCTTCTCCATC 1 chr1:92787053-92787745 ( 52) AGGTCATCCTGCCAGCCTCTTCCTT 1 chr1:92787053-92787878 ( 52) AGGTCATCCTGCCAGCCTCTTCCTT 1 chr1:134244219-134245778 ( 780) ATGTTTGCATAGCTTTTTGGCCCTT 1 chr1:135843983-135845220 ( 697) TGTCTCCCTAATCTGTCTGTCCCTT 1 chr8:123884590-123885381 ( 536) TCCCTTCCCTTCCCTCTCCTTCCTC 1 chr8:123882342-123885242 ( 2784) TCCCTTCCCTTCCCTCTCCTTCCTC 1 chr1:134091600-134093367 ( 1149) TTGGCTGATATGCTCTCTGCTCTTT 1 chr1:134092570-134093219 ( 179) TTGGCTGATATGCTCTCTGCTCTTT 1 chr6:72259181-72260517 ( 1123) GTCTTTCACAATCACTTCCTACCTT 1 chr1:91413901-91414660 ( 80) GCCTCTCATTTCCCTCTAGTTCCTC 1 chr16:47842998-47843731 ( 346) TACTCATCGTTTCTTCCTCTCAGCT 1 chr7:45460723-45461396 ( 647) CCCTTAAAATGGCTTCCTCTTCCCT 1 chr4:74251643-74252226 ( 386) GGCCGCACTTTTCATCCCTTTCATT 1 chr16:30063016-30064679 ( 1143) GCTGCTATTTACCTTCTTGGCTTCT 1 chrX:167091787-167092426 ( 257) GATCTTGTGAGTCATCCTTTGCTCT 1 chr1:177441252-177442123 ( 24) TTTTCTACATTTCCTCTTTGCTGGT 1 chr15:85698553-85699119 ( 20) TCTCCTTTTAGTCTCTCACTATTTC 1 chr1:134098990-134100352 ( 963) GGTCTCTTAGGCCACTCTGTCCCCT 1 chr1:136228027-136229131 ( 765) TGGACTTTTTTGCACTCTGGAATTT 1 chr1:135933277-135934547 ( 292) TGCGCTAGACACCATTCTTTTCACT 1 chr1:135861587-135863192 ( 515) ATGTCTGGGTTTCTTCCTCCACACA 1 chr15:77888063-77888703 ( 232) TTTTGTTTTGTTTTGTCTTATCCTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 39044 bayes= 10.2337 E= 1.3e-010 -62 -324 11 125 -94 -66 -21 108 -1173 56 -21 67 -294 -7 -63 125 -1173 115 -221 54 -36 -66 -1173 154 -14 -24 -63 78 -36 34 -163 78 6 34 -163 54 -14 -324 -221 167 -14 -1173 -5 125 -1173 8 -63 125 -1173 180 -1173 -291 23 -44 -1173 125 -1173 -7 -121 148 -1173 100 -1173 99 -1173 134 -1173 40 -194 -66 -1173 178 -1173 66 49 -33 -294 -166 -89 173 -36 8 -121 89 -194 161 -1173 -133 -36 66 -221 54 -1173 8 -163 148 -194 -66 -1173 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 34 E= 1.3e-010 0.147059 0.029412 0.294118 0.529412 0.117647 0.176471 0.235294 0.470588 0.000000 0.411765 0.235294 0.352941 0.029412 0.264706 0.176471 0.529412 0.000000 0.617647 0.058824 0.323529 0.176471 0.176471 0.000000 0.647059 0.205882 0.235294 0.176471 0.382353 0.176471 0.352941 0.088235 0.382353 0.235294 0.352941 0.088235 0.323529 0.205882 0.029412 0.058824 0.705882 0.205882 0.000000 0.264706 0.529412 0.000000 0.294118 0.176471 0.529412 0.000000 0.970588 0.000000 0.029412 0.264706 0.205882 0.000000 0.529412 0.000000 0.264706 0.117647 0.617647 0.000000 0.558824 0.000000 0.441176 0.000000 0.705882 0.000000 0.294118 0.058824 0.176471 0.000000 0.764706 0.000000 0.441176 0.382353 0.176471 0.029412 0.088235 0.147059 0.735294 0.176471 0.294118 0.117647 0.411765 0.058824 0.852941 0.000000 0.088235 0.176471 0.441176 0.058824 0.323529 0.000000 0.294118 0.088235 0.617647 0.058824 0.176471 0.000000 0.764706 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [TG][TG][CTG][TC][CT]T[TCA][TC][CTA][TA][TGA][TC]C[TAC][TC][CT][CT]T[CG]T[TC]C[CT][TC]T -------------------------------------------------------------------------------- Time 159.18 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 21 sites = 39 llr = 400 E-value = 4.5e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 311356:548232635642a3 pos.-specific C :::::2:11:113:111:3:1 probability G :58722642:762353244:5 matrix T 751:314:21:1412:21::2 bits 2.2 * 2.0 * 1.7 * 1.5 * * Relative 1.3 * * Entropy 1.1 * * * * (14.8 bits) 0.9 * ** * ** * * 0.7 **** ** ** * * * 0.4 ******** *** * *** * 0.2 ************ ******** 0.0 --------------------- Multilevel TGGGAAGAAAGGTAGAAAGAG consensus AT AT TGG AACGAGGGC A sequence T A A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr3:87982114-87984371 39 2.10e-10 GGCAGGGTGG TGGGAAGGAAGGAAGAAGCAG AGAAAGCCTT chr8:123884590-123885381 353 6.28e-09 TGAGCAGGCA ATGGTATAAAAATAGAAGCAG GCAGTGGGCG chr8:123882342-123885242 2601 6.28e-09 TGAGCAGGCA ATGGTATAAAAATAGAAGCAG GCAGTGGGCG chr3:88138602-88139038 3 4.01e-08 GC TGGGAATAGAGGCAAGAAAAT GGCGTGATAC chr3:88138276-88138625 329 4.01e-08 TGCCCTAGGC TGGGAATAGAGGCAAGAAAAT chr7:45460723-45461396 153 1.06e-07 AATCATGAAA AGGGGCTAAAGGAAGAAACAG TAAGATGGGT chr1:92787053-92787745 649 1.06e-07 GTGGGACACC TTTGAAGGAAGGAAGAATGAT CTTCCTACTC chr1:92787053-92787878 649 1.06e-07 GTGGGACACC TTTGAAGGAAGGAAGAATGAT CTTCCTACTC chr6:108668244-108668981 629 1.66e-07 AATAACATAT TTTGTAGATAAATAAAAGCAG GCCCAGAGAC chrX:167091787-167092426 110 3.36e-07 CACAATAACA ATGGTATACAGACATAAGGAA AGGAGATCCT chr15:77888063-77888703 81 8.36e-07 ATCCAGGCGA TAGATAGATAGATAGATAGAT AGATAGATAG chr16:30063016-30064679 1510 1.07e-06 TGGGAGCCTG CGGGGAGAAAGGTAGAGAGAG TGGCGGAGGA chr1:135861587-135863192 990 1.20e-06 GTTGGTTTCT TTGGAGGAGAGGAACAGAGAG TCCAGTCATA chr6:72259181-72260517 281 3.31e-06 GGGGGGAAAG AGGATGGAAAAGAGGAAGAAA AGGAAAAAAC chr1:136228027-136229131 209 3.68e-06 AGGGGATCTA TTGGATTGTTGGTAGAGACAA TGGCAGACTA chr1:134098990-134100352 859 3.68e-06 TTTGGGGAGG TTGGACTAGAGACTGGAAAAT CCCAACAGAC chr1:91413901-91414660 739 4.53e-06 AAGACCTTTG AGGAAGGGAAAGTACAAGCAG chr1:134195091-134196873 879 5.01e-06 GGGGATTTCC TGGAGAGAAAGTGGGGAGGAG GCTACGAACA chr1:134091600-134093367 983 5.01e-06 GACACACGGA TTGGTAGGTAGGTGTCAACAC TGGCCTTTAC chr1:75344260-75345310 482 5.01e-06 TGTTCTGTTG ATGGTATGGAGCTGTGAAGAA AAGACTTGGG chr1:134092570-134093219 13 5.01e-06 GACACACGGA TTGGTAGGTAGGTGTCAACAC TGGCCTTTAC chr16:47842998-47843731 525 6.75e-06 CATCAAAACA TGGGAAGCAAGATGGATGTAA TGAAGTGACT chr1:135933277-135934547 642 7.44e-06 ATTCATCCGC TTTATATCAAAGCAAATGGAG GGCGTGGACA chr1:134244219-134245778 1027 8.18e-06 AAAGGACAGC TGGGGCTGAAGGAGGACAAAG ATGGGCACCC chr1:135770524-135771765 764 9.00e-06 AGTCCAGAGC TGGAACTGCAGAAGAGAAGAA AGGATGGATC chr1:135843983-135845220 858 9.88e-06 TCTGTTGGGT TTGGAAGAAGGACTTGAAGAG ACACTGGATT chr15:25915728-25916468 610 1.08e-05 GCAGTGGTTC TGTGACTATAGCCAAAGGCAG AGAGTTCCTG chr1:135668102-135668958 738 1.85e-05 ACTCCCAATC TGGGCATCAAGATATGGAGAT CCTGAGACAA chr1:135534977-135536185 107 2.38e-05 CTGGTGCCTC ATGCTGTGTAGATAGATGCAG AGCTGCCCAC chr1:177441252-177442123 269 4.15e-05 GCGGGGATCG TGAAAAGAAACGCAGCTGCAA CTTGAACAGA chr1:75361825-75362213 341 4.15e-05 AGACTACAGG AGGAAATCCAACTAAGAGAAG AAGCAGAGAA chr10:45311444-45312243 117 4.83e-05 TCTTACAGAT TTAAGAGAAAAACTGAATAAA CTGGAAAAAA chr1:134079056-134080037 651 6.02e-05 CACTGTTTGG TGGGAGGAGTGTCGAGGAGAG TATTTTCTGT chr4:74251643-74252226 455 6.47e-05 TAACCTCTTC TTGGTCGGGACGGAGCGGGAA GGGTGGCGGC chr4:43038998-43039732 559 7.45e-05 TTTTTACCCT AAGGAAGGTTAGGGTAAGAAT TCCTACCCAT chr11:95990733-95991563 277 9.79e-05 GCCTTCTGCC AGGGAGGGTTGGAAAGCTGAG CAGTCAGGGC chr15:34795064-34795760 16 1.36e-04 TACGGGCTTC TAAGGCTACAGGGAAGGACAG GGCTCCGAGG chr8:126583914-126584586 576 3.08e-04 ATCTGCGGTC ATGTATGAGAGGGAGTGGAAG CCCCCTCCAC chr15:85698553-85699119 164 8.46e-04 ACAGTACTGT TGAATGGGGTGGGGACTTGAA CCCAGAACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:87982114-87984371 2.1e-10 38_[+4]_2198 chr8:123884590-123885381 6.3e-09 352_[+4]_418 chr8:123882342-123885242 6.3e-09 2600_[+4]_279 chr3:88138602-88139038 4e-08 2_[+4]_413 chr3:88138276-88138625 4e-08 328_[+4] chr7:45460723-45461396 1.1e-07 152_[+4]_500 chr1:92787053-92787745 1.1e-07 648_[+4]_23 chr1:92787053-92787878 1.1e-07 648_[+4]_156 chr6:108668244-108668981 1.7e-07 628_[+4]_88 chrX:167091787-167092426 3.4e-07 109_[+4]_509 chr15:77888063-77888703 8.4e-07 80_[+4]_539 chr16:30063016-30064679 1.1e-06 1509_[+4]_133 chr1:135861587-135863192 1.2e-06 989_[+4]_595 chr6:72259181-72260517 3.3e-06 280_[+4]_1035 chr1:136228027-136229131 3.7e-06 208_[+4]_875 chr1:134098990-134100352 3.7e-06 858_[+4]_483 chr1:91413901-91414660 4.5e-06 738_[+4] chr1:134195091-134196873 5e-06 878_[+4]_883 chr1:134091600-134093367 5e-06 982_[+4]_764 chr1:75344260-75345310 5e-06 481_[+4]_548 chr1:134092570-134093219 5e-06 12_[+4]_616 chr16:47842998-47843731 6.7e-06 524_[+4]_188 chr1:135933277-135934547 7.4e-06 641_[+4]_608 chr1:134244219-134245778 8.2e-06 1026_[+4]_512 chr1:135770524-135771765 9e-06 763_[+4]_457 chr1:135843983-135845220 9.9e-06 857_[+4]_359 chr15:25915728-25916468 1.1e-05 609_[+4]_110 chr1:135668102-135668958 1.8e-05 737_[+4]_98 chr1:135534977-135536185 2.4e-05 106_[+4]_1081 chr1:177441252-177442123 4.1e-05 268_[+4]_582 chr1:75361825-75362213 4.1e-05 340_[+4]_27 chr10:45311444-45312243 4.8e-05 116_[+4]_662 chr1:134079056-134080037 6e-05 650_[+4]_310 chr4:74251643-74252226 6.5e-05 454_[+4]_108 chr4:43038998-43039732 7.5e-05 558_[+4]_155 chr11:95990733-95991563 9.8e-05 276_[+4]_533 chr15:34795064-34795760 0.00014 15_[+4]_660 chr8:126583914-126584586 0.00031 575_[+4]_76 chr15:85698553-85699119 0.00085 163_[+4]_382 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=21 seqs=39 chr3:87982114-87984371 ( 39) TGGGAAGGAAGGAAGAAGCAG 1 chr8:123884590-123885381 ( 353) ATGGTATAAAAATAGAAGCAG 1 chr8:123882342-123885242 ( 2601) ATGGTATAAAAATAGAAGCAG 1 chr3:88138602-88139038 ( 3) TGGGAATAGAGGCAAGAAAAT 1 chr3:88138276-88138625 ( 329) TGGGAATAGAGGCAAGAAAAT 1 chr7:45460723-45461396 ( 153) AGGGGCTAAAGGAAGAAACAG 1 chr1:92787053-92787745 ( 649) TTTGAAGGAAGGAAGAATGAT 1 chr1:92787053-92787878 ( 649) TTTGAAGGAAGGAAGAATGAT 1 chr6:108668244-108668981 ( 629) TTTGTAGATAAATAAAAGCAG 1 chrX:167091787-167092426 ( 110) ATGGTATACAGACATAAGGAA 1 chr15:77888063-77888703 ( 81) TAGATAGATAGATAGATAGAT 1 chr16:30063016-30064679 ( 1510) CGGGGAGAAAGGTAGAGAGAG 1 chr1:135861587-135863192 ( 990) TTGGAGGAGAGGAACAGAGAG 1 chr6:72259181-72260517 ( 281) AGGATGGAAAAGAGGAAGAAA 1 chr1:136228027-136229131 ( 209) TTGGATTGTTGGTAGAGACAA 1 chr1:134098990-134100352 ( 859) TTGGACTAGAGACTGGAAAAT 1 chr1:91413901-91414660 ( 739) AGGAAGGGAAAGTACAAGCAG 1 chr1:134195091-134196873 ( 879) TGGAGAGAAAGTGGGGAGGAG 1 chr1:134091600-134093367 ( 983) TTGGTAGGTAGGTGTCAACAC 1 chr1:75344260-75345310 ( 482) ATGGTATGGAGCTGTGAAGAA 1 chr1:134092570-134093219 ( 13) TTGGTAGGTAGGTGTCAACAC 1 chr16:47842998-47843731 ( 525) TGGGAAGCAAGATGGATGTAA 1 chr1:135933277-135934547 ( 642) TTTATATCAAAGCAAATGGAG 1 chr1:134244219-134245778 ( 1027) TGGGGCTGAAGGAGGACAAAG 1 chr1:135770524-135771765 ( 764) TGGAACTGCAGAAGAGAAGAA 1 chr1:135843983-135845220 ( 858) TTGGAAGAAGGACTTGAAGAG 1 chr15:25915728-25916468 ( 610) TGTGACTATAGCCAAAGGCAG 1 chr1:135668102-135668958 ( 738) TGGGCATCAAGATATGGAGAT 1 chr1:135534977-135536185 ( 107) ATGCTGTGTAGATAGATGCAG 1 chr1:177441252-177442123 ( 269) TGAAAAGAAACGCAGCTGCAA 1 chr1:75361825-75362213 ( 341) AGGAAATCCAACTAAGAGAAG 1 chr10:45311444-45312243 ( 117) TTAAGAGAAAAACTGAATAAA 1 chr1:134079056-134080037 ( 651) TGGGAGGAGTGTCGAGGAGAG 1 chr4:74251643-74252226 ( 455) TTGGTCGGGACGGAGCGGGAA 1 chr4:43038998-43039732 ( 559) AAGGAAGGTTAGGGTAAGAAT 1 chr11:95990733-95991563 ( 277) AGGGAGGGTTGGAAAGCTGAG 1 chr15:34795064-34795760 ( 16) TAAGGCTACAGGGAAGGACAG 1 chr8:126583914-126584586 ( 576) ATGTATGAGAGGGAGTGGAAG 1 chr15:85698553-85699119 ( 164) TGAATGGGGTGGGGACTTGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 39200 bayes= 9.97173 E= 4.5e-010 44 -344 -1193 159 -155 -1193 76 105 -114 -1193 149 -79 18 -344 134 -311 111 -344 -83 59 138 -63 -61 -211 -1193 -1193 105 97 118 -144 49 -1193 95 -144 -24 6 190 -1193 -341 -79 3 -244 139 -1193 44 -186 105 -211 3 -12 -83 69 150 -1193 5 -153 32 -244 83 -31 125 -112 17 -311 132 -244 -24 -53 95 -1193 67 -79 3 26 59 -311 214 -1193 -1193 -1193 18 -244 83 -11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 39 E= 4.5e-010 0.307692 0.025641 0.000000 0.666667 0.076923 0.000000 0.461538 0.461538 0.102564 0.000000 0.769231 0.128205 0.256410 0.025641 0.692308 0.025641 0.487179 0.025641 0.153846 0.333333 0.589744 0.179487 0.179487 0.051282 0.000000 0.000000 0.564103 0.435897 0.512821 0.102564 0.384615 0.000000 0.435897 0.102564 0.230769 0.230769 0.846154 0.000000 0.025641 0.128205 0.230769 0.051282 0.717949 0.000000 0.307692 0.076923 0.564103 0.051282 0.230769 0.256410 0.153846 0.358974 0.641026 0.000000 0.282051 0.076923 0.282051 0.051282 0.487179 0.179487 0.538462 0.128205 0.307692 0.025641 0.564103 0.051282 0.230769 0.153846 0.435897 0.000000 0.435897 0.128205 0.230769 0.333333 0.410256 0.025641 1.000000 0.000000 0.000000 0.000000 0.256410 0.051282 0.487179 0.205128 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- [TA][GT]G[GA][AT]A[GT][AG][AGT]A[GA][GA][TCA][AG][GA][AG][AG][AG][GCA]A[GAT] -------------------------------------------------------------------------------- Time 210.37 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 10 sites = 39 llr = 333 E-value = 1.1e-006 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A 523:8::::1 pos.-specific C :::9::9::: probability G 487::71:a2 matrix T 2:::23:a:6 bits 2.2 * 2.0 * 1.7 ** 1.5 * ** Relative 1.3 ** *** Entropy 1.1 **** *** (12.3 bits) 0.9 ******** 0.7 ********** 0.4 ********** 0.2 ********** 0.0 ---------- Multilevel AGGCAGCTGT consensus GAA TT G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chr7:45460723-45461396 369 1.09e-06 CTGTGTGGTC AGGCAGCTGT ACGGCTCTGG chr1:135770524-135771765 851 2.40e-06 AAGGCTCCAC GGGCAGCTGT GTCACCAGGG chr1:135668102-135668958 296 3.30e-06 TCCAGCTGAG AGACAGCTGT GCCCCAGGCC chr1:134091600-134093367 1282 4.19e-06 CAAAGGATTA AGGCATCTGT GACTGGCCAT chr1:134092570-134093219 312 4.19e-06 CAAAGGATTA AGGCATCTGT GACTGGCCAT chr8:123882342-123885242 299 5.28e-06 GAGTGAAGGG GGACAGCTGT GCTTGGGAAG chr1:134098990-134100352 1300 5.28e-06 ACCTGAACAC GGACAGCTGT GCCCCGTGGG chr15:85698553-85699119 269 5.28e-06 AGAGTTATCC GGACAGCTGT AGTTGCACAC chr3:87982114-87984371 326 8.32e-06 CGTAAACTCT TGGCAGCTGT GTAGGAGACC chr1:136228027-136229131 402 8.32e-06 TGGCCAGGGT TGGCAGCTGT TAGCCAGAGC chr1:134244219-134245778 936 8.32e-06 ACAGGAGGGG TGGCAGCTGT TTCCCTCGGC chr1:91413901-91414660 259 1.15e-05 CTGCAGGCCG AGGCTGCTGT CTGGCCCCAG chr15:34795064-34795760 334 1.15e-05 TGCATCAGAT AGGCAGCTGG CAGGGGTGGG chr10:45311444-45312243 304 1.15e-05 TCTGTGAGGC AGGCAGCTGG TGGATGAATC chr4:43038998-43039732 349 1.91e-05 AGCTGGCATT AAACAGCTGT GCCAGACTGT chr8:126583914-126584586 102 2.57e-05 TTTTGTCCGG AGGCTTCTGT AAACTTCACA chr1:135534977-135536185 846 2.57e-05 AAAGATGCTT AGGCATCTGG GACTAAGAGC chr4:74251643-74252226 327 2.79e-05 CGTGCGCAGC GAACAGCTGT CACCCAGTGC chr1:92787053-92787745 353 2.79e-05 TGGCCGGGCT GGGCAGCTGA CTTCACGCCA chr1:92787053-92787878 353 2.79e-05 TGGCCGGGCT GGGCAGCTGA CTTCACGCCA chr8:123884590-123885381 87 4.33e-05 GGCAGCCCTG GGGCTTCTGT CTGTGGTACC chr6:72259181-72260517 728 4.33e-05 AGACCGAGGA GGGCAGGTGT GGAGGAGTTG chr1:134195091-134196873 308 7.44e-05 AGACACGGGC AAGCAGGTGT CTGAGACCTT chr15:25915728-25916468 361 7.44e-05 TCTGTGAGGT TGGCATCTGG GTCCTCACAG chr11:95990733-95991563 422 7.97e-05 GGAGAAGGCC GAGCAGCTGA GAGGCCCGGC chr16:47842998-47843731 210 8.86e-05 CGTCTTGAAA GGACTGCTGG GAAATTTAGT chr3:88138276-88138625 174 9.67e-05 TTGACGTCAA TAGCAGCTGG TGGAGTTTGG chr6:108668244-108668981 431 1.13e-04 AAATAGGGCC TGGCTGCTGG CAAGGCCGCG chr1:135861587-135863192 1426 1.13e-04 CAGAGTCTGG GGACATGTGT TAGATGGTAC chr15:77888063-77888703 514 1.22e-04 CCAAGGAGAC AGGGAGCTGT GCACCCCCTC chrX:167091787-167092426 501 1.43e-04 TGCCTTCTGC AAACATCTGA AAAGTCCCTC chr1:177441252-177442123 605 1.43e-04 GCCCCTCCCC GCGCAGCTGT CGCCGCCGCC chr1:135843983-135845220 780 1.52e-04 ATGAAAATAG AAACTGCTGG CAACCTTCTG chr1:135933277-135934547 966 1.52e-04 AAGGAAACAA AGACAGGTGA CGGGTTTAGG chr1:134079056-134080037 12 1.96e-04 GTGGCTGAGG AAGTAGCTGT ATTAGAACGA chr1:75344260-75345310 712 2.36e-04 AAGGACTCTG GGACTTGTGT GGGTACAGCT chr3:88138602-88139038 158 2.58e-04 GGTGGGGGGG AGACTACTGT AAGGTTGTGT chr16:30063016-30064679 741 4.00e-04 AAGTGCGGTC AGGCATCTCG TGACCGCGGC chr1:75361825-75362213 164 4.33e-04 CCCGTAGGCG GGGCTTCTGC TGCTTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:45460723-45461396 1.1e-06 368_[+5]_295 chr1:135770524-135771765 2.4e-06 850_[+5]_381 chr1:135668102-135668958 3.3e-06 295_[+5]_551 chr1:134091600-134093367 4.2e-06 1281_[+5]_476 chr1:134092570-134093219 4.2e-06 311_[+5]_328 chr8:123882342-123885242 5.3e-06 298_[+5]_2592 chr1:134098990-134100352 5.3e-06 1299_[+5]_53 chr15:85698553-85699119 5.3e-06 268_[+5]_288 chr3:87982114-87984371 8.3e-06 325_[+5]_1922 chr1:136228027-136229131 8.3e-06 401_[+5]_693 chr1:134244219-134245778 8.3e-06 935_[+5]_614 chr1:91413901-91414660 1.1e-05 258_[+5]_491 chr15:34795064-34795760 1.1e-05 333_[+5]_353 chr10:45311444-45312243 1.1e-05 303_[+5]_486 chr4:43038998-43039732 1.9e-05 348_[+5]_376 chr8:126583914-126584586 2.6e-05 101_[+5]_561 chr1:135534977-135536185 2.6e-05 845_[+5]_353 chr4:74251643-74252226 2.8e-05 326_[+5]_247 chr1:92787053-92787745 2.8e-05 352_[+5]_330 chr1:92787053-92787878 2.8e-05 352_[+5]_463 chr8:123884590-123885381 4.3e-05 86_[+5]_695 chr6:72259181-72260517 4.3e-05 727_[+5]_599 chr1:134195091-134196873 7.4e-05 307_[+5]_1465 chr15:25915728-25916468 7.4e-05 360_[+5]_370 chr11:95990733-95991563 8e-05 421_[+5]_399 chr16:47842998-47843731 8.9e-05 209_[+5]_514 chr3:88138276-88138625 9.7e-05 173_[+5]_166 chr6:108668244-108668981 0.00011 430_[+5]_297 chr1:135861587-135863192 0.00011 1425_[+5]_170 chr15:77888063-77888703 0.00012 513_[+5]_117 chrX:167091787-167092426 0.00014 500_[+5]_129 chr1:177441252-177442123 0.00014 604_[+5]_257 chr1:135843983-135845220 0.00015 779_[+5]_448 chr1:135933277-135934547 0.00015 965_[+5]_295 chr1:134079056-134080037 0.0002 11_[+5]_960 chr1:75344260-75345310 0.00024 711_[+5]_329 chr3:88138602-88139038 0.00026 157_[+5]_269 chr16:30063016-30064679 0.0004 740_[+5]_913 chr1:75361825-75362213 0.00043 163_[+5]_215 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=10 seqs=39 chr7:45460723-45461396 ( 369) AGGCAGCTGT 1 chr1:135770524-135771765 ( 851) GGGCAGCTGT 1 chr1:135668102-135668958 ( 296) AGACAGCTGT 1 chr1:134091600-134093367 ( 1282) AGGCATCTGT 1 chr1:134092570-134093219 ( 312) AGGCATCTGT 1 chr8:123882342-123885242 ( 299) GGACAGCTGT 1 chr1:134098990-134100352 ( 1300) GGACAGCTGT 1 chr15:85698553-85699119 ( 269) GGACAGCTGT 1 chr3:87982114-87984371 ( 326) TGGCAGCTGT 1 chr1:136228027-136229131 ( 402) TGGCAGCTGT 1 chr1:134244219-134245778 ( 936) TGGCAGCTGT 1 chr1:91413901-91414660 ( 259) AGGCTGCTGT 1 chr15:34795064-34795760 ( 334) AGGCAGCTGG 1 chr10:45311444-45312243 ( 304) AGGCAGCTGG 1 chr4:43038998-43039732 ( 349) AAACAGCTGT 1 chr8:126583914-126584586 ( 102) AGGCTTCTGT 1 chr1:135534977-135536185 ( 846) AGGCATCTGG 1 chr4:74251643-74252226 ( 327) GAACAGCTGT 1 chr1:92787053-92787745 ( 353) GGGCAGCTGA 1 chr1:92787053-92787878 ( 353) GGGCAGCTGA 1 chr8:123884590-123885381 ( 87) GGGCTTCTGT 1 chr6:72259181-72260517 ( 728) GGGCAGGTGT 1 chr1:134195091-134196873 ( 308) AAGCAGGTGT 1 chr15:25915728-25916468 ( 361) TGGCATCTGG 1 chr11:95990733-95991563 ( 422) GAGCAGCTGA 1 chr16:47842998-47843731 ( 210) GGACTGCTGG 1 chr3:88138276-88138625 ( 174) TAGCAGCTGG 1 chr6:108668244-108668981 ( 431) TGGCTGCTGG 1 chr1:135861587-135863192 ( 1426) GGACATGTGT 1 chr15:77888063-77888703 ( 514) AGGGAGCTGT 1 chrX:167091787-167092426 ( 501) AAACATCTGA 1 chr1:177441252-177442123 ( 605) GCGCAGCTGT 1 chr1:135843983-135845220 ( 780) AAACTGCTGG 1 chr1:135933277-135934547 ( 966) AGACAGGTGA 1 chr1:134079056-134080037 ( 12) AAGTAGCTGT 1 chr1:75344260-75345310 ( 712) GGACTTGTGT 1 chr3:88138602-88139038 ( 158) AGACTACTGT 1 chr16:30063016-30064679 ( 741) AGGCATCTCG 1 chr1:75361825-75362213 ( 164) GGGCTTCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 39629 bayes= 9.98745 E= 1.1e-006 103 -1193 49 -53 -14 -344 149 -1193 56 -1193 129 -1193 -1193 177 -341 -311 177 -1193 -1193 6 -314 -1193 134 34 -1193 165 -109 -1193 -1193 -1193 -1193 217 -1193 -344 183 -1193 -82 -344 -24 147 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 39 E= 1.1e-006 0.461538 0.000000 0.384615 0.153846 0.205128 0.025641 0.769231 0.000000 0.333333 0.000000 0.666667 0.000000 0.000000 0.948718 0.025641 0.025641 0.769231 0.000000 0.000000 0.230769 0.025641 0.000000 0.692308 0.282051 0.000000 0.871795 0.128205 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.025641 0.974359 0.000000 0.128205 0.025641 0.230769 0.615385 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- [AG][GA][GA]C[AT][GT]CTG[TG] -------------------------------------------------------------------------------- Time 260.50 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 15 sites = 39 llr = 353 E-value = 2.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A :::53224::3:8:2 pos.-specific C 7a91:1317649::2 probability G 3::16753:111:a5 matrix T ::141::2332:2:1 bits 2.2 2.0 1.7 * * 1.5 * ** Relative 1.3 ** *** Entropy 1.1 ** *** (13.1 bits) 0.9 ** * ** *** 0.7 *** ** ** *** 0.4 ******* ** *** 0.2 ********** **** 0.0 --------------- Multilevel CCCAGGGACCCCAGG consensus G TAACGTTA A sequence A T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr1:135534977-135536185 472 6.06e-08 TTCCCGACTT CCCTGGGGCCTCAGG GCAGGCATGA chr15:25915728-25916468 253 4.22e-07 TATGCCAAGC CCCAGACACCACAGG AGCAGAATCA chr1:75344260-75345310 232 1.45e-06 AGAGGAGCGG GCCAGAGACCTCAGG GTGGGGGTGG chr1:92787053-92787745 266 2.26e-06 TAATCAGACT CCCAGGAGCTGCAGG GGTGGGAACA chr1:92787053-92787878 266 2.26e-06 TAATCAGACT CCCAGGAGCTGCAGG GGTGGGAACA chr1:134091600-134093367 1247 3.44e-06 CTCACAAAGG CCCTGGCGTCCCAGC CTTCCGGTCT chr1:134092570-134093219 277 3.44e-06 CTCACAAAGG CCCTGGCGTCCCAGC CTTCCGGTCT chr1:177441252-177442123 436 4.44e-06 GAGGGCCAGA CCCAGCGGCCCCAGG CTGGCCCTGG chr8:123882342-123885242 1504 7.24e-06 CTGCAGTCAC CCCAAGATCTCCAGA CTCAGGGGGA chr4:43038998-43039732 373 7.24e-06 GACTGTGGCT GCCAAGGACTACAGC TCCCAACATG chr1:136228027-136229131 890 7.24e-06 TCGTCCGACC CCCAGAGCTTCCAGG AGCTTAGGGT chr15:34795064-34795760 469 7.24e-06 GAAAGCCAGG CCCAGAGGTCCCTGG CTTAACCCTC chr1:135770524-135771765 201 8.12e-06 ATTCTGAGAA CCCTGGCTTCTCAGC TCTCATTGTA chr1:134244219-134245778 1110 1.14e-05 TTTCGTAGCA GCCTGGGACCTCTGA CCTCACTCTT chr1:134098990-134100352 232 1.26e-05 AGTGCAGCTC CCCAAGGCCCCGAGG AATGCCTTAC chr4:74251643-74252226 368 1.40e-05 TCCAAAGATT CCCAAAACCCTCAGG GGAGGCCGCA chr1:135843983-135845220 902 1.40e-05 AACAGACTTT CCCTAGCACCTCAGT TTAGTCAGGA chr8:126583914-126584586 193 1.71e-05 CGCGTGTGAC CCTCGGGGCCCCAGG CGCCAGCGCC chr1:134195091-134196873 1013 1.71e-05 ACCTGGAGCT GCCAGGCATTCCTGG CCTCCCAGAG chr16:30063016-30064679 1168 2.31e-05 CTTGGCTTCT CCCGGGGACCAGAGG CGGCCCCCGC chr7:45460723-45461396 549 2.55e-05 AAAGATAAAA CCCGGAAGCCACAGG GGACAAGGAA chr1:91413901-91414660 341 2.55e-05 CGGCAGGCCG GCCAGGAGCGACAGG TGTTGGCCGC chr3:87982114-87984371 1322 2.78e-05 CCCAGCCTCG CCCTGGGATGCCAGC TGTTGCCACT chr15:77888063-77888703 310 2.78e-05 CTGTAGCCAC CCCATGATCTGCAGG GGTGCGGTGA chr15:85698553-85699119 534 2.78e-05 GTCACTGATC CCCCTGGGCCTCAGA CTACCTGCCT chr1:135668102-135668958 313 3.35e-05 TGTGCCCCAG GCCAGGGACCACTGT GCAGCCACAC chr1:135861587-135863192 1315 3.99e-05 CCTCAAATCA GCCTGCCACTCCAGG AATCCTTCGG chr1:75361825-75362213 26 4.33e-05 GTCAGGCTAA GCCTGGGAACACAGA GGTGGATAAA chr6:72259181-72260517 579 6.04e-05 AGTGGGCAGT CCCAAAGGTTGCTGG GCTACAGTGA chr10:45311444-45312243 746 6.04e-05 GGAAGTTCAA CCCAAAGTTCAGAGA CCTACTAGCA chr8:123884590-123885381 180 6.53e-05 GCCTGTAGCT CCTTGGCCCTGCAGG GCAGGGGCCT chr6:108668244-108668981 530 6.53e-05 TTTAGGCAGA GCTTTGGATCCCAGG GCTAATTAAC chr16:47842998-47843731 661 6.53e-05 ATATCTAGTT ACCTGACACCCCAGA ATTTAGATCC chr1:134079056-134080037 893 1.18e-04 CTTTTGTAAA CACTAGCTCCCCAGA GGAAAGGCTT chr11:95990733-95991563 146 1.18e-04 GGGCCCTGTC CCCCAGGTTCAGAGA TGATTAGGAG chr1:135933277-135934547 887 1.26e-04 ACAGGTTCCT CCCTAGCATCTCATA TTGCAAGGAG chrX:167091787-167092426 162 1.54e-04 CAGTGTGGTG CCTAGGCTCTAGAGC AAAGAGCCAC chr3:88138602-88139038 312 2.25e-04 GTCCCTCAGC TCCAGGGCCCTCTGC TCTTGTCCCC chr3:88138276-88138625 86 2.53e-04 CCAGTAACAG GCCCTGAGCTACTGG CCCTTTAAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:135534977-135536185 6.1e-08 471_[+6]_722 chr15:25915728-25916468 4.2e-07 252_[+6]_473 chr1:75344260-75345310 1.4e-06 231_[+6]_804 chr1:92787053-92787745 2.3e-06 265_[+6]_412 chr1:92787053-92787878 2.3e-06 265_[+6]_545 chr1:134091600-134093367 3.4e-06 1246_[+6]_506 chr1:134092570-134093219 3.4e-06 276_[+6]_358 chr1:177441252-177442123 4.4e-06 435_[+6]_421 chr8:123882342-123885242 7.2e-06 1503_[+6]_1382 chr4:43038998-43039732 7.2e-06 372_[+6]_347 chr1:136228027-136229131 7.2e-06 889_[+6]_200 chr15:34795064-34795760 7.2e-06 468_[+6]_213 chr1:135770524-135771765 8.1e-06 200_[+6]_1026 chr1:134244219-134245778 1.1e-05 1109_[+6]_435 chr1:134098990-134100352 1.3e-05 231_[+6]_1116 chr4:74251643-74252226 1.4e-05 367_[+6]_201 chr1:135843983-135845220 1.4e-05 901_[+6]_321 chr8:126583914-126584586 1.7e-05 192_[+6]_465 chr1:134195091-134196873 1.7e-05 1012_[+6]_755 chr16:30063016-30064679 2.3e-05 1167_[+6]_481 chr7:45460723-45461396 2.5e-05 548_[+6]_110 chr1:91413901-91414660 2.5e-05 340_[+6]_404 chr3:87982114-87984371 2.8e-05 1321_[+6]_921 chr15:77888063-77888703 2.8e-05 309_[+6]_316 chr15:85698553-85699119 2.8e-05 533_[+6]_18 chr1:135668102-135668958 3.3e-05 312_[+6]_529 chr1:135861587-135863192 4e-05 1314_[+6]_276 chr1:75361825-75362213 4.3e-05 25_[+6]_348 chr6:72259181-72260517 6e-05 578_[+6]_743 chr10:45311444-45312243 6e-05 745_[+6]_39 chr8:123884590-123885381 6.5e-05 179_[+6]_597 chr6:108668244-108668981 6.5e-05 529_[+6]_193 chr16:47842998-47843731 6.5e-05 660_[+6]_58 chr1:134079056-134080037 0.00012 892_[+6]_74 chr11:95990733-95991563 0.00012 145_[+6]_670 chr1:135933277-135934547 0.00013 886_[+6]_369 chrX:167091787-167092426 0.00015 161_[+6]_463 chr3:88138602-88139038 0.00022 311_[+6]_110 chr3:88138276-88138625 0.00025 85_[+6]_249 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=15 seqs=39 chr1:135534977-135536185 ( 472) CCCTGGGGCCTCAGG 1 chr15:25915728-25916468 ( 253) CCCAGACACCACAGG 1 chr1:75344260-75345310 ( 232) GCCAGAGACCTCAGG 1 chr1:92787053-92787745 ( 266) CCCAGGAGCTGCAGG 1 chr1:92787053-92787878 ( 266) CCCAGGAGCTGCAGG 1 chr1:134091600-134093367 ( 1247) CCCTGGCGTCCCAGC 1 chr1:134092570-134093219 ( 277) CCCTGGCGTCCCAGC 1 chr1:177441252-177442123 ( 436) CCCAGCGGCCCCAGG 1 chr8:123882342-123885242 ( 1504) CCCAAGATCTCCAGA 1 chr4:43038998-43039732 ( 373) GCCAAGGACTACAGC 1 chr1:136228027-136229131 ( 890) CCCAGAGCTTCCAGG 1 chr15:34795064-34795760 ( 469) CCCAGAGGTCCCTGG 1 chr1:135770524-135771765 ( 201) CCCTGGCTTCTCAGC 1 chr1:134244219-134245778 ( 1110) GCCTGGGACCTCTGA 1 chr1:134098990-134100352 ( 232) CCCAAGGCCCCGAGG 1 chr4:74251643-74252226 ( 368) CCCAAAACCCTCAGG 1 chr1:135843983-135845220 ( 902) CCCTAGCACCTCAGT 1 chr8:126583914-126584586 ( 193) CCTCGGGGCCCCAGG 1 chr1:134195091-134196873 ( 1013) GCCAGGCATTCCTGG 1 chr16:30063016-30064679 ( 1168) CCCGGGGACCAGAGG 1 chr7:45460723-45461396 ( 549) CCCGGAAGCCACAGG 1 chr1:91413901-91414660 ( 341) GCCAGGAGCGACAGG 1 chr3:87982114-87984371 ( 1322) CCCTGGGATGCCAGC 1 chr15:77888063-77888703 ( 310) CCCATGATCTGCAGG 1 chr15:85698553-85699119 ( 534) CCCCTGGGCCTCAGA 1 chr1:135668102-135668958 ( 313) GCCAGGGACCACTGT 1 chr1:135861587-135863192 ( 1315) GCCTGCCACTCCAGG 1 chr1:75361825-75362213 ( 26) GCCTGGGAACACAGA 1 chr6:72259181-72260517 ( 579) CCCAAAGGTTGCTGG 1 chr10:45311444-45312243 ( 746) CCCAAAGTTCAGAGA 1 chr8:123884590-123885381 ( 180) CCTTGGCCCTGCAGG 1 chr6:108668244-108668981 ( 530) GCTTTGGATCCCAGG 1 chr16:47842998-47843731 ( 661) ACCTGACACCCCAGA 1 chr1:134079056-134080037 ( 893) CACTAGCTCCCCAGA 1 chr11:95990733-95991563 ( 146) CCCCAGGTTCAGAGA 1 chr1:135933277-135934547 ( 887) CCCTAGCATCTCATA 1 chrX:167091787-167092426 ( 162) CCTAGGCTCTAGAGC 1 chr3:88138602-88139038 ( 312) TCCAGGGCCCTCTGC 1 chr3:88138276-88138625 ( 86) GCCCTGAGCTACTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 39434 bayes= 9.98032 E= 2.8e-004 -314 131 -9 -311 -314 181 -1193 -1193 -1193 169 -1193 -111 111 -144 -241 69 18 -1193 123 -111 3 -244 139 -1193 -14 14 83 -1193 67 -112 29 -31 -314 126 -1193 47 -1193 120 -241 47 32 37 -109 6 -1193 165 -109 -1193 186 -1193 -1193 -31 -1193 -1193 183 -311 3 -63 98 -211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 39 E= 2.8e-004 0.025641 0.692308 0.256410 0.025641 0.025641 0.974359 0.000000 0.000000 0.000000 0.897436 0.000000 0.102564 0.487179 0.102564 0.051282 0.358974 0.256410 0.000000 0.641026 0.102564 0.230769 0.051282 0.717949 0.000000 0.205128 0.307692 0.487179 0.000000 0.358974 0.128205 0.333333 0.179487 0.025641 0.666667 0.000000 0.307692 0.000000 0.641026 0.051282 0.307692 0.282051 0.358974 0.128205 0.230769 0.000000 0.871795 0.128205 0.000000 0.820513 0.000000 0.000000 0.179487 0.000000 0.000000 0.974359 0.025641 0.230769 0.179487 0.538462 0.051282 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- [CG]CC[AT][GA][GA][GCA][AG][CT][CT][CAT]CAG[GA] -------------------------------------------------------------------------------- Time 309.88 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 20 sites = 7 llr = 144 E-value = 3.1e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A ::11::::::::1:1:1:3: pos.-specific C :1::11:::1:::1:::1:: probability G :6:9:9:a:91a17:a39:a matrix T a39:9:a:a:9:719:6:7: bits 2.2 * * * 2.0 * *** * * * 1.7 * *** * * * 1.5 * * * *** ** ** * Relative 1.3 * ********** ** *** Entropy 1.1 * ********** ** *** (29.7 bits) 0.9 * ************** *** 0.7 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel TGTGTGTGTGTGTGTGTGTG consensus T G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- chr6:72259181-72260517 1046 6.69e-13 CCCAGATTTG TGTGTGTGTGTGTGTGTGTG TGTGTGTGTG chr1:134079056-134080037 732 6.69e-13 GCAGTGTCTG TGTGTGTGTGTGTGTGTGTG TGTGTGTGTG chr1:91413901-91414660 484 6.69e-13 GCGGGAGGGG TGTGTGTGTGTGTGTGTGTG TGTGTGTGTG chr6:108668244-108668981 104 8.93e-10 TAAAAGGGGG TGTGTGTGTGTGAGAGAGAG AGAGAGCCAG chr1:75344260-75345310 1007 2.53e-09 GTGTGAGGCT TTAGCGTGTGGGTGTGGGTG TCCATCTCTT chr1:75361825-75362213 303 2.91e-09 TCCCTCACTA TTTGTCTGTCTGTTTGTCTG CCCTGGCTAG chr1:134244219-134245778 699 4.91e-09 TATCGACTTT TCTATGTGTGTGGCTGGGAG GATTTGGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:72259181-72260517 6.7e-13 1045_[+7]_271 chr1:134079056-134080037 6.7e-13 731_[+7]_230 chr1:91413901-91414660 6.7e-13 483_[+7]_256 chr6:108668244-108668981 8.9e-10 103_[+7]_614 chr1:75344260-75345310 2.5e-09 1006_[+7]_24 chr1:75361825-75362213 2.9e-09 302_[+7]_66 chr1:134244219-134245778 4.9e-09 698_[+7]_841 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=20 seqs=7 chr6:72259181-72260517 ( 1046) TGTGTGTGTGTGTGTGTGTG 1 chr1:134079056-134080037 ( 732) TGTGTGTGTGTGTGTGTGTG 1 chr1:91413901-91414660 ( 484) TGTGTGTGTGTGTGTGTGTG 1 chr6:108668244-108668981 ( 104) TGTGTGTGTGTGAGAGAGAG 1 chr1:75344260-75345310 ( 1007) TTAGCGTGTGGGTGTGGGTG 1 chr1:75361825-75362213 ( 303) TTTGTCTGTCTGTTTGTCTG 1 chr1:134244219-134245778 ( 699) TCTATGTGTGTGGCTGGGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 39239 bayes= 13.0582 E= 3.1e-004 -945 -945 -945 217 -945 -96 106 36 -66 -945 -945 195 -66 -945 165 -945 -945 -96 -945 195 -945 -96 165 -945 -945 -945 -945 217 -945 -945 187 -945 -945 -945 -945 217 -945 -96 165 -945 -945 -945 -93 195 -945 -945 187 -945 -66 -945 -93 168 -945 -96 139 -64 -66 -945 -945 195 -945 -945 187 -945 -66 -945 7 136 -945 -96 165 -945 34 -945 -945 168 -945 -945 187 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 7 E= 3.1e-004 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.571429 0.285714 0.142857 0.000000 0.000000 0.857143 0.142857 0.000000 0.857143 0.000000 0.000000 0.142857 0.000000 0.857143 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.142857 0.857143 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.142857 0.714286 0.000000 0.142857 0.714286 0.142857 0.142857 0.000000 0.000000 0.857143 0.000000 0.000000 1.000000 0.000000 0.142857 0.000000 0.285714 0.571429 0.000000 0.142857 0.857143 0.000000 0.285714 0.000000 0.000000 0.714286 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- T[GT]TGTGTGTGTGTGTG[TG]G[TA]G -------------------------------------------------------------------------------- Time 358.28 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 24 sites = 7 llr = 154 E-value = 1.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A a:913:49:a14461::a:::::: pos.-specific C :11633::a:7::::9a::a:197 probability G :9:34361:::6639:::a:3::: matrix T :::::4::::1::1:1::::7913 bits 2.2 * * * 2.0 * * ** 1.7 * ** **** 1.5 * * *** **** * Relative 1.3 *** *** ********* Entropy 1.1 *** **** ** ********** (31.7 bits) 0.9 *** ******* ********** 0.7 *** ****************** 0.4 ************************ 0.2 ************************ 0.0 ------------------------ Multilevel AGACGTGACACGGAGCCAGCTTCC consensus GACA AAG G T sequence CG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ chr1:134091600-134093367 1392 1.55e-12 CTCCCGGCCC AGAGGTGACACGGAGCCAGCGTCC CTTCTCAAGA chr1:134092570-134093219 422 1.55e-12 CTCCCGGCCC AGAGGTGACACGGAGCCAGCGTCC CTTCTCAAGA chr1:92787053-92787745 112 4.87e-12 TGTGATCCTA AGACCCAACACAAGGCCAGCTTCC TCCTGCCAGG chr1:92787053-92787878 112 4.87e-12 TGTGATCCTA AGACCCAACACAAGGCCAGCTTCC TCCTGCCAGG chr1:135861587-135863192 394 3.33e-10 AGGAGAAATC ACACGTAGCACAGAACCAGCTTCT TCTGGAGAGT chr1:91413901-91414660 591 4.88e-10 GCTGCTTTAG AGCCAGGACAAGGAGCCAGCTCCT AATCAGCCTT chr1:135843983-135845220 161 9.71e-10 TAGCCAGAGC AGAAAGGACATGATGTCAGCTTTC AGATGTGTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:134091600-134093367 1.6e-12 1391_[+8]_352 chr1:134092570-134093219 1.6e-12 421_[+8]_204 chr1:92787053-92787745 4.9e-12 111_[+8]_557 chr1:92787053-92787878 4.9e-12 111_[+8]_690 chr1:135861587-135863192 3.3e-10 393_[+8]_1188 chr1:91413901-91414660 4.9e-10 590_[+8]_145 chr1:135843983-135845220 9.7e-10 160_[+8]_1053 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=24 seqs=7 chr1:134091600-134093367 ( 1392) AGAGGTGACACGGAGCCAGCGTCC 1 chr1:134092570-134093219 ( 422) AGAGGTGACACGGAGCCAGCGTCC 1 chr1:92787053-92787745 ( 112) AGACCCAACACAAGGCCAGCTTCC 1 chr1:92787053-92787878 ( 112) AGACCCAACACAAGGCCAGCTTCC 1 chr1:135861587-135863192 ( 394) ACACGTAGCACAGAACCAGCTTCT 1 chr1:91413901-91414660 ( 591) AGCCAGGACAAGGAGCCAGCTCCT 1 chr1:135843983-135845220 ( 161) AGAAAGGACATGATGTCAGCTTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 39083 bayes= 12.2905 E= 1.0e+000 214 -945 -945 -945 -945 -96 165 -945 192 -96 -945 -945 -66 103 7 -945 34 4 65 -945 -945 4 7 95 92 -945 106 -945 192 -945 -93 -945 -945 184 -945 -945 214 -945 -945 -945 -66 136 -945 -64 92 -945 106 -945 92 -945 106 -945 134 -945 7 -64 -66 -945 165 -945 -945 162 -945 -64 -945 184 -945 -945 214 -945 -945 -945 -945 -945 187 -945 -945 184 -945 -945 -945 -945 7 168 -945 -96 -945 195 -945 162 -945 -64 -945 136 -945 36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 7 E= 1.0e+000 1.000000 0.000000 0.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.857143 0.142857 0.000000 0.000000 0.142857 0.571429 0.285714 0.000000 0.285714 0.285714 0.428571 0.000000 0.000000 0.285714 0.285714 0.428571 0.428571 0.000000 0.571429 0.000000 0.857143 0.000000 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.142857 0.714286 0.000000 0.142857 0.428571 0.000000 0.571429 0.000000 0.428571 0.000000 0.571429 0.000000 0.571429 0.000000 0.285714 0.142857 0.142857 0.000000 0.857143 0.000000 0.000000 0.857143 0.000000 0.142857 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.142857 0.000000 0.857143 0.000000 0.857143 0.000000 0.142857 0.000000 0.714286 0.000000 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- AGA[CG][GAC][TCG][GA]ACAC[GA][GA][AG]GCCAGC[TG]TC[CT] -------------------------------------------------------------------------------- Time 405.64 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 11 sites = 35 llr = 307 E-value = 6.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A :1::1:14171 pos.-specific C :4a9:::39:5 probability G a4:::8931:3 matrix T :1::92:::3: bits 2.2 2.0 1.7 * * * 1.5 * *** Relative 1.3 * ***** * Entropy 1.1 * ***** ** (12.7 bits) 0.9 * ***** ** 0.7 * ***** ** 0.4 * ********* 0.2 *********** 0.0 ----------- Multilevel GCCCTGGACAC consensus G G TG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr1:91413901-91414660 642 7.72e-07 TCCATCCTTA GGCCTGGACAC CACTAAGCAC chr11:95990733-95991563 255 7.72e-07 GGAGGACCCA GCCCTGGACAC AGCCTTCTGC chr1:136228027-136229131 14 2.46e-06 GATGAGAAAA GGCCTGGACAG TGGGCACAAA chr1:92787053-92787745 463 4.32e-06 AACAGCCTGG GGCCTGGCCAC CCACAGCCCA chr1:92787053-92787878 463 4.32e-06 AACAGCCTGG GGCCTGGCCAC CCACAGCCCA chr6:72259181-72260517 962 4.64e-06 AAGCAAGGCT GACCTGGACAC TGGATGTGTA chr15:85698553-85699119 398 5.71e-06 TCACAGCCCT GCCCTGGACTC ATGTGGACAG chr1:177441252-177442123 454 7.02e-06 CCCCAGGCTG GCCCTGGCCAG CTGCGGCCCC chr1:135861587-135863192 321 7.02e-06 AGGATGCTCT GGCCTGGCCAG CAGCAACCCG chr16:30063016-30064679 1094 7.02e-06 GCGCCAATGA GCCCTGGCCAG GCGCAGGGGG chr7:45460723-45461396 512 1.09e-05 CAACCCGACA GGCCTGGACAA GGCTGTAAAG chr1:134079056-134080037 324 1.17e-05 GAGGGCCTTG GACCTGGGCAG AGGAAGCGCG chr16:47842998-47843731 24 1.58e-05 GAGATAATGG GGCCTTGGCAC TATGATGGGA chr1:134091600-134093367 93 1.80e-05 GAACTGAGGA GTCCTGGACTC TCCTATCCAG chr8:123882342-123885242 922 2.20e-05 GTTGATGCCT GCCCTGGCCTG TCCCCTGGCT chr3:88138602-88139038 391 2.36e-05 GTGCCACACG GACCTGGACAA GTTTCTGGCG chr15:25915728-25916468 671 2.36e-05 CCTGGTGTTT GCCCTGAGCAC TGTCAAAAAC chr1:134195091-134196873 1466 2.46e-05 TCCTCAGAAA GTCCTGGGCTC CTGGGATGCT chr3:88138276-88138625 302 3.50e-05 ACAGAAATAC GTCCTGGGCAA ACTTTCTGCC chr1:134098990-134100352 1289 3.50e-05 CATGATCCCA GACCTGAACAC GGACAGCTGT chr1:135534977-135536185 32 4.18e-05 GGGGGAGGGT GACCTTGGCAG ATGCACCCTT chr4:43038998-43039732 111 4.88e-05 GCCCTCCTGA GCCCTTGCCTC GAGGAAGCCA chr3:87982114-87984371 526 4.88e-05 GCCCACGGAG GCCCTGGGGAC CCCCAGAAGG chr1:134244219-134245778 1508 5.30e-05 TTTCTTCTCT GCCCAGGCCAC CAACAATGTT chr1:135668102-135668958 419 7.43e-05 TGAGTCACGG GGCCTGGAATC CCAAGTCTTC chr4:74251643-74252226 514 8.54e-05 GGGCAGCACG GGCCTGGGCGC TCCGCGGTGC chr6:108668244-108668981 179 9.33e-05 GGAGCTCAGA GGCCTGGGATC TGGCGGCCTT chr1:135933277-135934547 663 1.02e-04 GCAAATGGAG GGCGTGGACAG AGCTGCTCAT chr1:135843983-135845220 350 1.19e-04 TGACCACTGG GCCCATGGCAC GTGGCACAGG chr1:75344260-75345310 56 1.45e-04 AGTTGAGTCC TCCCTGGCCAG GACCCTCTCC chr1:75361825-75362213 236 1.57e-04 ATGTCCCTGT GTCCTGAGCTG GCTCCCTGAT chr15:34795064-34795760 369 1.70e-04 GCCTTCCCGC GGCTTGGGCTC TGTTCTGCAT chr15:77888063-77888703 601 1.78e-04 CATAGGCCGA GCCCAGAACAG AGCTCCAGGT chr8:123884590-123885381 4 2.19e-04 TGT GGCCTTTACAG ATGGGATACT chr10:45311444-45312243 62 2.88e-04 AATGCCGCCT GCCCTTGAGAA TCCTTTTATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:91413901-91414660 7.7e-07 641_[+9]_107 chr11:95990733-95991563 7.7e-07 254_[+9]_565 chr1:136228027-136229131 2.5e-06 13_[+9]_1080 chr1:92787053-92787745 4.3e-06 462_[+9]_219 chr1:92787053-92787878 4.3e-06 462_[+9]_352 chr6:72259181-72260517 4.6e-06 961_[+9]_364 chr15:85698553-85699119 5.7e-06 397_[+9]_158 chr1:177441252-177442123 7e-06 453_[+9]_407 chr1:135861587-135863192 7e-06 320_[+9]_1274 chr16:30063016-30064679 7e-06 1093_[+9]_559 chr7:45460723-45461396 1.1e-05 511_[+9]_151 chr1:134079056-134080037 1.2e-05 323_[+9]_647 chr16:47842998-47843731 1.6e-05 23_[+9]_699 chr1:134091600-134093367 1.8e-05 92_[+9]_1664 chr8:123882342-123885242 2.2e-05 921_[+9]_1968 chr3:88138602-88139038 2.4e-05 390_[+9]_35 chr15:25915728-25916468 2.4e-05 670_[+9]_59 chr1:134195091-134196873 2.5e-05 1465_[+9]_306 chr3:88138276-88138625 3.5e-05 301_[+9]_37 chr1:134098990-134100352 3.5e-05 1288_[+9]_63 chr1:135534977-135536185 4.2e-05 31_[+9]_1166 chr4:43038998-43039732 4.9e-05 110_[+9]_613 chr3:87982114-87984371 4.9e-05 525_[+9]_1721 chr1:134244219-134245778 5.3e-05 1507_[+9]_41 chr1:135668102-135668958 7.4e-05 418_[+9]_427 chr4:74251643-74252226 8.5e-05 513_[+9]_59 chr6:108668244-108668981 9.3e-05 178_[+9]_548 chr1:135933277-135934547 0.0001 662_[+9]_597 chr1:135843983-135845220 0.00012 349_[+9]_877 chr1:75344260-75345310 0.00015 55_[+9]_984 chr1:75361825-75362213 0.00016 235_[+9]_142 chr15:34795064-34795760 0.00017 368_[+9]_317 chr15:77888063-77888703 0.00018 600_[+9]_29 chr8:123884590-123885381 0.00022 3_[+9]_777 chr10:45311444-45312243 0.00029 61_[+9]_727 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=11 seqs=35 chr1:91413901-91414660 ( 642) GGCCTGGACAC 1 chr11:95990733-95991563 ( 255) GCCCTGGACAC 1 chr1:136228027-136229131 ( 14) GGCCTGGACAG 1 chr1:92787053-92787745 ( 463) GGCCTGGCCAC 1 chr1:92787053-92787878 ( 463) GGCCTGGCCAC 1 chr6:72259181-72260517 ( 962) GACCTGGACAC 1 chr15:85698553-85699119 ( 398) GCCCTGGACTC 1 chr1:177441252-177442123 ( 454) GCCCTGGCCAG 1 chr1:135861587-135863192 ( 321) GGCCTGGCCAG 1 chr16:30063016-30064679 ( 1094) GCCCTGGCCAG 1 chr7:45460723-45461396 ( 512) GGCCTGGACAA 1 chr1:134079056-134080037 ( 324) GACCTGGGCAG 1 chr16:47842998-47843731 ( 24) GGCCTTGGCAC 1 chr1:134091600-134093367 ( 93) GTCCTGGACTC 1 chr8:123882342-123885242 ( 922) GCCCTGGCCTG 1 chr3:88138602-88139038 ( 391) GACCTGGACAA 1 chr15:25915728-25916468 ( 671) GCCCTGAGCAC 1 chr1:134195091-134196873 ( 1466) GTCCTGGGCTC 1 chr3:88138276-88138625 ( 302) GTCCTGGGCAA 1 chr1:134098990-134100352 ( 1289) GACCTGAACAC 1 chr1:135534977-135536185 ( 32) GACCTTGGCAG 1 chr4:43038998-43039732 ( 111) GCCCTTGCCTC 1 chr3:87982114-87984371 ( 526) GCCCTGGGGAC 1 chr1:134244219-134245778 ( 1508) GCCCAGGCCAC 1 chr1:135668102-135668958 ( 419) GGCCTGGAATC 1 chr4:74251643-74252226 ( 514) GGCCTGGGCGC 1 chr6:108668244-108668981 ( 179) GGCCTGGGATC 1 chr1:135933277-135934547 ( 663) GGCGTGGACAG 1 chr1:135843983-135845220 ( 350) GCCCATGGCAC 1 chr1:75344260-75345310 ( 56) TCCCTGGCCAG 1 chr1:75361825-75362213 ( 236) GTCCTGAGCTG 1 chr15:34795064-34795760 ( 369) GGCTTGGGCTC 1 chr15:77888063-77888703 ( 601) GCCCAGAACAG 1 chr8:123884590-123885381 ( 4) GGCCTTTACAG 1 chr10:45311444-45312243 ( 62) GCCCTTGAGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 39590 bayes= 10.2449 E= 6.7e-001 -1177 -1177 183 -296 -66 41 44 -96 -1177 184 -1177 -1177 -1177 176 -325 -296 -140 -1177 -1177 204 -1177 -1177 160 -37 -98 -1177 165 -296 82 -12 33 -1177 -198 167 -226 -1177 166 -1177 -325 21 -98 96 33 -1177 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 35 E= 6.7e-001 0.000000 0.000000 0.971429 0.028571 0.142857 0.371429 0.371429 0.114286 0.000000 1.000000 0.000000 0.000000 0.000000 0.942857 0.028571 0.028571 0.085714 0.000000 0.000000 0.914286 0.000000 0.000000 0.828571 0.171429 0.114286 0.000000 0.857143 0.028571 0.400000 0.257143 0.342857 0.000000 0.057143 0.885714 0.057143 0.000000 0.714286 0.000000 0.028571 0.257143 0.114286 0.542857 0.342857 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- G[CG]CCTGG[AGC]C[AT][CG] -------------------------------------------------------------------------------- Time 452.61 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 25 sites = 5 llr = 128 E-value = 1.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A ::2:6::::68a22::::a:::2:: pos.-specific C :24:42:::4::::444::a:a:42 probability G :84a:4:a::2:4::::::::::6: matrix T a::::4a:a:::48666a::a:8:8 bits 2.2 * * * * ** * 2.0 * * *** * ** * 1.7 * * *** * ***** 1.5 * * *** * * ****** Relative 1.3 * * *** ** * ****** * Entropy 1.1 ** ** ****** ********** * (36.9 bits) 0.9 ** ** ****** ************ 0.7 ** ** ****** ************ 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel TGCGAGTGTAAAGTTTTTACTCTGT consensus CG CT CG TACCC ACC sequence A C A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr8:123884590-123885381 119 1.35e-13 AGCCTGTTGC TGCGCTTGTAAATTCTCTACTCTGT TCCCAGAGCC chr8:123882342-123885242 2367 1.35e-13 AGCCTGTTGC TGCGCTTGTAAATTCTCTACTCTGT TCCCAGAGCC chr1:92787053-92787745 10 2.54e-13 CCACTTCTC TGGGAGTGTCAAGTTCTTACTCTCT AACAGTGAAT chr1:92787053-92787878 10 2.54e-13 CCACTTCTC TGGGAGTGTCAAGTTCTTACTCTCT AACAGTGAAT chrX:167091787-167092426 363 4.28e-11 AGATCAAAGT TCAGACTGTAGAAATTTTACTCAGC ATTTATATTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:123884590-123885381 1.4e-13 118_[+10]_648 chr8:123882342-123885242 1.4e-13 2366_[+10]_509 chr1:92787053-92787745 2.5e-13 9_[+10]_658 chr1:92787053-92787878 2.5e-13 9_[+10]_791 chrX:167091787-167092426 4.3e-11 362_[+10]_252 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=25 seqs=5 chr8:123884590-123885381 ( 119) TGCGCTTGTAAATTCTCTACTCTGT 1 chr8:123882342-123885242 ( 2367) TGCGCTTGTAAATTCTCTACTCTGT 1 chr1:92787053-92787745 ( 10) TGGGAGTGTCAAGTTCTTACTCTCT 1 chr1:92787053-92787878 ( 10) TGGGAGTGTCAAGTTCTTACTCTCT 1 chrX:167091787-167092426 ( 363) TCAGACTGTAGAAATTTTACTCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 39044 bayes= 13.1823 E= 1.4e+000 -897 -897 -897 217 -897 -48 155 -897 -18 52 55 -897 -897 -897 187 -897 141 52 -897 -897 -897 -48 55 85 -897 -897 -897 217 -897 -897 187 -897 -897 -897 -897 217 141 52 -897 -897 182 -897 -45 -897 214 -897 -897 -897 -18 -897 55 85 -18 -897 -897 185 -897 52 -897 143 -897 52 -897 143 -897 52 -897 143 -897 -897 -897 217 214 -897 -897 -897 -897 184 -897 -897 -897 -897 -897 217 -897 184 -897 -897 -18 -897 -897 185 -897 52 113 -897 -897 -48 -897 185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 5 E= 1.4e+000 0.000000 0.000000 0.000000 1.000000 0.000000 0.200000 0.800000 0.000000 0.200000 0.400000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 0.200000 0.400000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.600000 0.400000 0.000000 0.000000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.400000 0.400000 0.200000 0.000000 0.000000 0.800000 0.000000 0.400000 0.000000 0.600000 0.000000 0.400000 0.000000 0.600000 0.000000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.400000 0.600000 0.000000 0.000000 0.200000 0.000000 0.800000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- T[GC][CGA]G[AC][GTC]TGT[AC][AG]A[GTA][TA][TC][TC][TC]TACTC[TA][GC][TC] -------------------------------------------------------------------------------- Time 499.00 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:45311444-45312243 4.21e-08 116_[+4(4.83e-05)]_27_[+3(5.44e-07)]_114_[+5(1.15e-05)]_49_[+2(3.03e-05)]_30_[+7(8.99e-05)]_72_[+1(2.02e-06)]_216_[+6(6.04e-05)]_39 chr11:95990733-95991563 2.40e-12 73_[+3(8.53e-05)]_156_[+9(7.72e-07)]_11_[+4(9.79e-05)]_25_[+1(6.33e-05)]_29_[+1(6.89e-09)]_22_[+5(7.97e-05)]_14_[+2(4.97e-05)]_14_[+2(8.03e-07)]_91_[+9(1.70e-06)]_84_[+1(6.56e-06)]_2_[+3(6.24e-08)]_92 chr15:34795064-34795760 4.92e-08 13_[+1(1.15e-05)]_126_[+2(9.55e-05)]_149_[+5(1.15e-05)]_101_[+1(9.16e-07)]_[+6(7.24e-06)]_3_[+3(3.57e-07)]_185 chr15:25915728-25916468 7.10e-13 252_[+6(4.22e-07)]_75_[+7(4.26e-06)]_28_[+2(3.91e-05)]_103_[+3(1.45e-07)]_1_[+1(8.35e-07)]_45_[+4(1.08e-05)]_40_[+9(2.36e-05)]_59 chr15:85698553-85699119 1.09e-06 19_[+3(1.74e-05)]_[+2(2.30e-06)]_203_[+5(5.28e-06)]_119_[+9(5.71e-06)]_125_[+6(2.78e-05)]_18 chr15:77888063-77888703 5.73e-08 48_[+10(7.32e-05)]_7_[+4(8.36e-07)]_3_[+4(8.36e-07)]_3_[+4(8.36e-07)]_21_[+2(2.53e-06)]_40_[+3(4.72e-05)]_53_[+6(2.78e-05)]_224_[+1(3.05e-06)]_68 chr16:30063016-30064679 7.56e-10 409_[+9(5.30e-05)]_232_[+1(8.74e-06)]_165_[+1(2.64e-10)]_228_[+9(7.02e-06)]_38_[+3(9.59e-06)]_[+6(2.31e-05)]_30_[+2(1.53e-06)]_276_[+4(1.07e-06)]_44_[+3(3.91e-05)]_64 chr16:47842998-47843731 3.28e-07 23_[+9(1.58e-05)]_18_[+1(9.37e-06)]_133_[+5(8.86e-05)]_126_[+3(3.31e-06)]_154_[+4(6.75e-06)]_115_[+6(6.53e-05)]_33_[+2(3.70e-06)]_4 chr1:134092570-134093219 7.53e-19 12_[+4(5.01e-06)]_28_[+2(4.06e-06)]_96_[+3(1.47e-06)]_73_[+6(3.44e-06)]_20_[+5(4.19e-06)]_100_[+8(1.55e-12)]_40_[+1(1.41e-08)]_140 chr1:135770524-135771765 6.88e-10 200_[+6(8.12e-06)]_292_[+2(1.12e-06)]_102_[+1(6.92e-07)]_109_[+4(9.00e-06)]_66_[+5(2.40e-06)]_225_[+3(1.09e-08)]_131 chr1:75344260-75345310 5.50e-10 130_[+4(5.60e-05)]_15_[+1(1.71e-06)]_41_[+6(1.45e-06)]_235_[+4(5.01e-06)]_41_[+3(3.44e-05)]_341_[+6(2.10e-05)]_82_[+7(2.53e-09)]_24 chr1:92787053-92787878 6.36e-29 9_[+10(2.54e-13)]_17_[+3(6.04e-07)]_35_[+8(4.87e-12)]_5_[+2(3.98e-07)]_20_[+1(4.59e-08)]_33_[+10(7.95e-05)]_2_[+6(2.26e-06)]_72_[+5(2.79e-05)]_53_[+9(3.19e-05)]_36_[+9(4.32e-06)]_175_[+4(1.06e-07)]_156 chr1:91413901-91414660 5.01e-22 28_[+3(3.22e-05)]_26_[+3(3.03e-06)]_49_[+2(6.91e-08)]_84_[+5(1.15e-05)]_72_[+6(2.55e-05)]_128_[+7(6.69e-13)]_[+7(3.57e-09)]_20_[+8(9.24e-05)]_23_[+8(4.88e-10)]_27_[+9(7.72e-07)]_23_[+9(7.92e-05)]_52_[+4(4.53e-06)] chr1:134091600-134093367 7.96e-18 92_[+9(1.80e-05)]_201_[+7(6.30e-06)]_487_[+2(3.67e-05)]_150_[+4(5.01e-06)]_28_[+2(4.06e-06)]_96_[+3(1.47e-06)]_73_[+6(3.44e-06)]_20_[+5(4.19e-06)]_100_[+8(1.55e-12)]_40_[+1(1.41e-08)]_288 chr1:135668102-135668958 2.09e-06 13_[+2(6.40e-07)]_107_[+8(8.28e-05)]_130_[+5(3.30e-06)]_7_[+6(3.35e-05)]_91_[+9(7.43e-05)]_171_[+10(6.57e-05)]_112_[+4(1.85e-05)]_98 chr1:134098990-134100352 1.69e-07 231_[+6(1.26e-05)]_360_[+4(1.52e-06)]_231_[+4(3.68e-06)]_83_[+3(2.15e-05)]_43_[+2(3.07e-06)]_237_[+9(3.50e-05)]_[+5(5.28e-06)]_53 chr1:135933277-135934547 6.59e-06 291_[+3(2.64e-05)]_130_[+2(4.85e-06)]_174_[+4(7.44e-06)]_72_[+1(4.38e-05)]_72_[+1(2.60e-06)]_288_[+4(4.15e-05)]_107 chr1:134195091-134196873 2.89e-09 288_[+4(3.03e-05)]_16_[+3(3.52e-10)]_51_[+1(1.93e-05)]_453_[+4(5.01e-06)]_113_[+6(1.71e-05)]_338_[+3(9.02e-05)]_75_[+9(2.46e-05)]_22_[+2(1.21e-05)]_20_[+2(6.30e-06)]_115_[+10(2.76e-05)]_82 chr1:135843983-135845220 6.46e-10 52_[+2(4.97e-05)]_87_[+8(9.71e-10)]_42_[+1(5.26e-06)]_239_[+6(6.04e-05)]_80_[+3(9.54e-05)]_87_[+3(9.04e-07)]_136_[+4(9.88e-06)]_23_[+6(1.40e-05)]_321 chr1:134244219-134245778 4.36e-12 98_[+1(8.35e-07)]_576_[+7(4.91e-09)]_61_[+3(8.18e-07)]_131_[+5(8.32e-06)]_81_[+4(8.18e-06)]_62_[+6(1.14e-05)]_30_[+3(4.17e-05)]_17_[+2(3.52e-07)]_269_[+2(1.63e-05)]_[+9(5.30e-05)]_41 chr1:135534977-135536185 7.40e-17 31_[+9(4.18e-05)]_64_[+4(2.38e-05)]_32_[+3(2.30e-05)]_287_[+6(6.06e-08)]_305_[+2(3.10e-07)]_33_[+5(2.57e-05)]_16_[+3(8.36e-13)]_4_[+3(4.91e-07)]_133_[+8(8.28e-05)]_25_[+1(2.29e-07)]_77 chr1:134079056-134080037 5.23e-17 186_[+2(1.40e-05)]_86_[+1(4.59e-08)]_6_[+9(1.17e-05)]_316_[+4(6.02e-05)]_58_[+7(6.69e-13)]_[+7(6.69e-13)]_[+7(3.76e-09)]_41_[+2(7.17e-07)]_2_[+3(1.92e-08)]_103 chr1:135861587-135863192 4.19e-14 320_[+9(7.02e-06)]_31_[+1(3.57e-08)]_7_[+8(3.33e-10)]_97_[+3(3.22e-05)]_84_[+4(2.38e-05)]_164_[+2(9.28e-08)]_160_[+4(1.20e-06)]_304_[+6(3.99e-05)]_276 chr1:75361825-75362213 2.96e-13 25_[+6(4.33e-05)]_94_[+2(1.62e-07)]_22_[+3(1.29e-07)]_100_[+7(2.91e-09)]_18_[+4(4.15e-05)]_27 chr1:136228027-136229131 6.48e-09 13_[+9(2.46e-06)]_70_[+1(3.71e-05)]_90_[+4(3.68e-06)]_172_[+5(8.32e-06)]_8_[+1(2.29e-07)]_321_[+3(2.30e-05)]_27_[+4(2.58e-05)]_52_[+6(7.24e-06)]_56_[+5(1.15e-05)]_75_[+5(4.33e-05)]_20_[+4(5.60e-05)]_8 chr1:92787053-92787745 1.42e-29 9_[+10(2.54e-13)]_17_[+3(6.04e-07)]_35_[+8(4.87e-12)]_5_[+2(3.98e-07)]_20_[+1(4.59e-08)]_33_[+10(7.95e-05)]_2_[+6(2.26e-06)]_72_[+5(2.79e-05)]_53_[+9(3.19e-05)]_36_[+9(4.32e-06)]_175_[+4(1.06e-07)]_23 chr1:177441252-177442123 3.67e-08 23_[+3(1.40e-05)]_35_[+1(6.10e-06)]_161_[+4(4.15e-05)]_146_[+6(4.44e-06)]_3_[+9(7.02e-06)]_246_[+2(3.37e-06)]_140 chr3:88138276-88138625 5.65e-11 16_[+3(2.20e-08)]_132_[+5(9.67e-05)]_29_[+1(1.48e-07)]_65_[+9(3.50e-05)]_16_[+4(4.01e-08)] chr3:88138602-88139038 4.37e-11 2_[+4(4.01e-08)]_99_[+1(4.59e-08)]_18_[+7(1.73e-05)]_9_[+2(1.63e-05)]_176_[+9(2.36e-05)]_35 chr3:87982114-87984371 4.47e-15 38_[+4(2.10e-10)]_25_[+8(5.00e-05)]_84_[+2(1.23e-07)]_112_[+5(8.32e-06)]_5_[+8(2.99e-05)]_161_[+9(4.88e-05)]_24_[+1(8.51e-05)]_441_[+3(9.54e-05)]_141_[+2(2.66e-05)]_109_[+6(2.78e-05)]_211_[+1(2.55e-07)]_264_[+3(1.02e-07)]_192_[+2(2.32e-05)]_184 chr4:43038998-43039732 7.79e-09 3_[+2(1.24e-06)]_86_[+9(4.88e-05)]_227_[+5(1.91e-05)]_14_[+6(7.24e-06)]_82_[+1(2.82e-06)]_17_[+3(4.91e-07)]_23_[+4(7.45e-05)]_155 chr4:74251643-74252226 2.62e-08 243_[+2(8.10e-06)]_4_[+1(5.86e-08)]_34_[+5(2.79e-05)]_31_[+6(1.40e-05)]_3_[+3(5.50e-06)]_44_[+4(6.47e-05)]_38_[+9(8.54e-05)]_59 chr6:72259181-72260517 3.69e-14 15_[+1(1.50e-05)]_208_[+4(3.03e-05)]_12_[+4(3.31e-06)]_66_[+2(2.08e-06)]_190_[+6(6.04e-05)]_134_[+5(4.33e-05)]_43_[+4(1.55e-05)]_32_[+1(5.14e-05)]_104_[+9(4.64e-06)]_71_[+7(6.69e-13)]_[+7(6.69e-13)]_9_[+7(5.21e-05)]_10_[+3(1.61e-06)]_189 chr6:108668244-108668981 6.68e-09 22_[+4(4.83e-05)]_60_[+7(8.93e-10)]_55_[+9(9.33e-05)]_299_[+1(5.26e-06)]_17_[+6(6.53e-05)]_84_[+4(1.66e-07)]_88 chr7:45460723-45461396 4.64e-10 114_[+4(2.39e-06)]_17_[+4(1.06e-07)]_103_[+1(1.07e-05)]_68_[+5(1.09e-06)]_143_[+4(5.01e-06)]_6_[+6(2.55e-05)]_83_[+3(4.28e-06)]_2 chr8:123882342-123885242 2.62e-19 123_[+2(4.97e-05)]_154_[+5(5.28e-06)]_141_[+6(3.99e-05)]_326_[+2(2.32e-05)]_110_[+9(2.20e-05)]_349_[+6(3.65e-05)]_1_[+1(1.10e-06)]_34_[+6(8.21e-05)]_1_[+1(1.10e-06)]_34_[+6(3.65e-05)]_1_[+1(1.10e-06)]_34_[+6(7.24e-06)]_1_[+1(1.10e-06)]_681_[+10(1.20e-06)]_80_[+6(3.99e-05)]_22_[+10(1.35e-13)]_36_[+6(6.53e-05)]_158_[+4(6.28e-09)]_54_[+2(1.97e-09)]_77_[+3(3.01e-05)]_[+2(5.58e-05)]_81 chr8:123884590-123885381 3.24e-18 81_[+6(3.99e-05)]_22_[+10(1.35e-13)]_36_[+6(6.53e-05)]_158_[+4(6.28e-09)]_54_[+2(1.97e-09)]_77_[+3(3.01e-05)]_[+2(5.58e-05)]_220 chr8:126583914-126584586 2.39e-08 31_[+2(1.51e-05)]_49_[+5(2.57e-05)]_24_[+2(1.15e-08)]_36_[+6(1.71e-05)]_238_[+1(1.44e-06)]_107_[+7(3.64e-05)]_76 chrX:167091787-167092426 3.83e-10 109_[+4(3.36e-07)]_126_[+3(1.04e-05)]_81_[+10(4.28e-11)]_69_[+2(3.37e-06)]_162 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************