******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= mm10.Cross_Differentiation.liftOver.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:45311444-45312243 1.0000 799 chr15:34795064-34795760 1.0000 696 chr15:85698553-85699119 1.0000 566 chr16:47842998-47843731 1.0000 733 chr1:134092570-134093219 1.0000 649 chr1:135770524-135771765 1.0000 1241 chr1:75344260-75345310 1.0000 1050 chr1:91413901-91414660 1.0000 759 chr1:135668102-135668958 1.0000 856 chr1:134098990-134100352 1.0000 1362 chr1:134195091-134196873 1.0000 1782 chr1:135843983-135845220 1.0000 1237 chr1:134244219-134245778 1.0000 1559 chr1:134079056-134080037 1.0000 981 chr1:135534977-135536185 1.0000 1208 chr1:135861587-135863192 1.0000 1605 chr1:136228027-136229131 1.0000 1104 chr1:92787053-92787745 1.0000 692 chr3:88138602-88139038 1.0000 436 chr3:87982114-87984371 1.0000 2257 chr6:72259181-72260517 1.0000 1336 chr7:45460723-45461396 1.0000 673 chr8:123884590-123885381 1.0000 791 chrX:167091787-167092426 1.0000 639 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme mm10.Cross_Differentiation.liftOver.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o mm10.Cross_Differentiation.liftOver.meme.maxw25 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 24 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 25011 N= 24 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.229 C 0.271 G 0.267 T 0.234 Background letter frequencies (from dataset with add-one prior applied): A 0.229 C 0.271 G 0.267 T 0.234 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 21 sites = 19 llr = 256 E-value = 1.1e-008 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A :12:554121535::618621 pos.-specific C ::::11:3::13:13111::3 probability G 498a4366494449538:476 matrix T 6::::1::4::11:2111:1: bits 2.1 1.9 * 1.7 * * 1.5 * * * * Relative 1.3 *** * * * Entropy 1.1 **** * * * *** (19.4 bits) 0.9 **** * * ** **** 0.6 ***** ** ** ** ****** 0.4 ***** ***** ********* 0.2 ********************* 0.0 --------------------- Multilevel TGGGAAGGGGAGAGGAGAAGG consensus G A GGACT GAG CG GAC sequence A C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr1:135770524-135771765 629 1.42e-09 GAGGTGGGGT GGGGAGGCTGAGGGGAGAAGG GATGGGCTCG chr3:87982114-87984371 1552 1.02e-08 TCTGTGTGTG TGGGGGGGGGCAGGGAGAGGG CTAAATTCTA chr1:134079056-134080037 298 1.16e-08 TCCCGTGCTG TGGGAGGCAGGCGGGAGAGGG CCTTGGACCT chr1:75344260-75345310 171 1.92e-08 GCCGGGGCTG GGGGGAGGTGCCAGGAGAAAG AATTGCAAAG chr3:88138602-88139038 123 3.89e-08 CACGTGACCC GGAGGGGGTGGAGGCAGAAGC TGGGGGTGGG chr1:134195091-134196873 939 4.35e-08 TCTCATGAGC TGGGCAGGGGAGAGTGGAGGC CCTGTCCAGG chr16:47842998-47843731 40 6.02e-08 GGCACTATGA TGGGAAGGAGACGCCAGAGGG TGGAGGGTGT chr1:136228027-136229131 427 1.23e-07 AGAGCAGGGG TGGGGAGGGGAGGGTGGAATC CAGGCGGAGG chr1:135534977-135536185 1111 1.80e-07 TGGGCCTGTA GGGGGTAAGGGGAGGAGAAAG GTCTCAACAA chr7:45460723-45461396 562 2.16e-07 GGAAGCCACA GGGGACAAGGAAAGGAGAGAG GTACACAAAT chr1:134098990-134100352 589 2.58e-07 GACTGAGGCT TGGGAAGGGGAGACCGGCAGG AAAGAAAGTC chr1:91413901-91414660 737 2.58e-07 GGAAGACCTT TGAGGAAGGGAAAGTACAAGC AG chr1:135861587-135863192 367 3.65e-07 ACTTGACCAA GGGGAGGGGAGCAGGAGAGGA GAAATCACAC chr1:135843983-135845220 540 5.95e-07 GCAGAGACGA TGAGGCAGTGGGGGTGGAGGC CCTCTCTCCT chr1:92787053-92787745 185 1.09e-06 CTGTGTCTAT GGGGGAAGAGAGGGCCGCAGG GGCTGTGGGG chr1:135668102-135668958 687 1.35e-06 GACTAAGACA TAAGAGGCTGATAGGGGAAGC ACAGCCCCTA chr6:72259181-72260517 273 1.66e-06 ATGAAAAAGG GGGGAAAGAGGATGGAAAAGA GGAAGAAAAG chr15:34795064-34795760 333 4.00e-06 TTGCATCAGA TAGGCAGCTGGCAGGGGTGGG GGCCAGCCTT chr8:123884590-123885381 16 5.93e-06 CCTTTACAGA TGGGATACTGGAAGCTTAAAG ACAAGGACTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:135770524-135771765 1.4e-09 628_[+1]_592 chr3:87982114-87984371 1e-08 1551_[+1]_685 chr1:134079056-134080037 1.2e-08 297_[+1]_663 chr1:75344260-75345310 1.9e-08 170_[+1]_859 chr3:88138602-88139038 3.9e-08 122_[+1]_293 chr1:134195091-134196873 4.3e-08 938_[+1]_823 chr16:47842998-47843731 6e-08 39_[+1]_673 chr1:136228027-136229131 1.2e-07 426_[+1]_657 chr1:135534977-135536185 1.8e-07 1110_[+1]_77 chr7:45460723-45461396 2.2e-07 561_[+1]_91 chr1:134098990-134100352 2.6e-07 588_[+1]_753 chr1:91413901-91414660 2.6e-07 736_[+1]_2 chr1:135861587-135863192 3.6e-07 366_[+1]_1218 chr1:135843983-135845220 6e-07 539_[+1]_677 chr1:92787053-92787745 1.1e-06 184_[+1]_487 chr1:135668102-135668958 1.3e-06 686_[+1]_149 chr6:72259181-72260517 1.7e-06 272_[+1]_1043 chr15:34795064-34795760 4e-06 332_[+1]_343 chr8:123884590-123885381 5.9e-06 15_[+1]_755 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=19 chr1:135770524-135771765 ( 629) GGGGAGGCTGAGGGGAGAAGG 1 chr3:87982114-87984371 ( 1552) TGGGGGGGGGCAGGGAGAGGG 1 chr1:134079056-134080037 ( 298) TGGGAGGCAGGCGGGAGAGGG 1 chr1:75344260-75345310 ( 171) GGGGGAGGTGCCAGGAGAAAG 1 chr3:88138602-88139038 ( 123) GGAGGGGGTGGAGGCAGAAGC 1 chr1:134195091-134196873 ( 939) TGGGCAGGGGAGAGTGGAGGC 1 chr16:47842998-47843731 ( 40) TGGGAAGGAGACGCCAGAGGG 1 chr1:136228027-136229131 ( 427) TGGGGAGGGGAGGGTGGAATC 1 chr1:135534977-135536185 ( 1111) GGGGGTAAGGGGAGGAGAAAG 1 chr7:45460723-45461396 ( 562) GGGGACAAGGAAAGGAGAGAG 1 chr1:134098990-134100352 ( 589) TGGGAAGGGGAGACCGGCAGG 1 chr1:91413901-91414660 ( 737) TGAGGAAGGGAAAGTACAAGC 1 chr1:135861587-135863192 ( 367) GGGGAGGGGAGCAGGAGAGGA 1 chr1:135843983-135845220 ( 540) TGAGGCAGTGGGGGTGGAGGC 1 chr1:92787053-92787745 ( 185) GGGGGAAGAGAGGGCCGCAGG 1 chr1:135668102-135668958 ( 687) TAAGAGGCTGATAGGGGAAGC 1 chr6:72259181-72260517 ( 273) GGGGAAAGAGGATGGAAAAGA 1 chr15:34795064-34795760 ( 333) TAGGCAGCTGGCAGGGGTGGG 1 chr8:123884590-123885381 ( 16) TGGGATACTGGAAGCTTAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 24531 bayes= 10.5282 E= 1.1e-008 -1089 -1089 66 131 -112 -1089 174 -1089 -12 -1089 156 -1089 -1089 -1089 191 -1089 105 -136 66 -1089 105 -136 24 -115 69 -1089 124 -1089 -112 -4 124 -1089 -12 -1089 66 66 -212 -1089 183 -1089 105 -136 66 -1089 47 -4 47 -215 120 -1089 66 -215 -1089 -136 174 -1089 -1089 -4 98 -15 134 -236 24 -215 -212 -236 166 -215 188 -136 -1089 -215 134 -1089 66 -1089 -12 -1089 146 -215 -112 22 112 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 19 E= 1.1e-008 0.000000 0.000000 0.421053 0.578947 0.105263 0.000000 0.894737 0.000000 0.210526 0.000000 0.789474 0.000000 0.000000 0.000000 1.000000 0.000000 0.473684 0.105263 0.421053 0.000000 0.473684 0.105263 0.315789 0.105263 0.368421 0.000000 0.631579 0.000000 0.105263 0.263158 0.631579 0.000000 0.210526 0.000000 0.421053 0.368421 0.052632 0.000000 0.947368 0.000000 0.473684 0.105263 0.421053 0.000000 0.315789 0.263158 0.368421 0.052632 0.526316 0.000000 0.421053 0.052632 0.000000 0.105263 0.894737 0.000000 0.000000 0.263158 0.526316 0.210526 0.578947 0.052632 0.315789 0.052632 0.052632 0.052632 0.842105 0.052632 0.842105 0.105263 0.000000 0.052632 0.578947 0.000000 0.421053 0.000000 0.210526 0.000000 0.736842 0.052632 0.105263 0.315789 0.578947 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TG]G[GA]G[AG][AG][GA][GC][GTA]G[AG][GAC][AG]G[GCT][AG]GA[AG][GA][GC] -------------------------------------------------------------------------------- Time 22.18 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 21 sites = 24 llr = 270 E-value = 9.3e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 11::34:11:18:42:3:::2 pos.-specific C 6755535799927345375a5 probability G 2:::1::1::::2:311:2:: matrix T 12551351:1::1423333:3 bits 2.1 1.9 1.7 * 1.5 ** * * Relative 1.3 **** * Entropy 1.1 ** * **** * * (16.2 bits) 0.9 ** * **** * * 0.6 *** * ***** * * 0.4 **** ******** * **** 0.2 ************** ****** 0.0 --------------------- Multilevel CCCTCACCCCCACACCCCCCC consensus TTCACT GTGTTTT T sequence T CA A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr1:91413901-91414660 192 2.32e-09 CCCTTAGAGT CCCCCATCCCCACTACCCCCA GTCCCTCTCA chr3:88138602-88139038 185 4.32e-08 TGTTTGTCTG CCCCCACCCCCACATCCTGCC CACCCAACTG chr8:123884590-123885381 433 5.05e-08 GCTGCCCGGC TCCTCCTCCCCACCCCACCCC GCCCCCTCCA chr1:134244219-134245778 1197 1.58e-07 GCTCTCTGGG CCTCCACCCCCCCCTTTCCCC TGTTCCCTCT chr3:87982114-87984371 193 2.33e-07 GGTGTCACCG CCCTGTCCCCCCCTCCCCCCC AGTTCTGCTT chr1:135861587-135863192 1285 2.99e-07 CTTCTTCTGC CTCTCCTACCCACACCACTCC CTCAAATCAG chr1:135668102-135668958 448 4.28e-07 TCCAGGACTT CACTCCTCCCCAGCCCACTCC ACATCTGCCC chr16:47842998-47843731 691 4.81e-07 GATCCTAGAA CCCCACTCCCCATATTTTCCT TGTTCTCCTT chr1:134195091-134196873 1183 9.37e-07 GGAGGCTCAG GCTCAGTCCCCACACCATCCC CCAGGGACAG chrX:167091787-167092426 278 1.16e-06 TCATCCTTTG CTCTATTTCCCACCACACCCA ATCCCCTGGG chr6:72259181-72260517 637 1.28e-06 TCCAGTGATG CCTCCATCCCCACACTCTGTC CCCTTCTGGG chr1:134098990-134100352 1028 1.57e-06 CCCAACACCT GCTCCATCACCACCTCTCCCA CACAGCGCAG chr15:34795064-34795760 483 1.57e-06 GAGGTCCCTG GCTTAACCCTCACTGTCCTCC TGTACTTTGC chr1:135843983-135845220 1045 1.73e-06 GCTAGACAGA ACTTCACCCCAACTAGTCCCC AGCAGTGAGT chr1:135534977-135536185 166 2.53e-06 GCGTGTGTGT CTTTTCCCCCCAGTCTTTTCT CTAGTTTAGG chr1:134079056-134080037 831 3.62e-06 TCCATCAGTT CCCTGCCCCTCCCTCTTCCCT GATTGTTTTC chr1:75344260-75345310 525 5.10e-06 GCAACTCGAG TCCCCTCCCCCACTGGGCCCT CCTCTCCTTG chr15:85698553-85699119 36 5.10e-06 TTTAGTCTCT CACTATTTCCCAGAATCCTCT CTCTTCCTGC chr1:136228027-136229131 882 6.01e-06 AAGACTGGTC GTCCGACCCCCAGAGCTTCCA GGAGCTTAGG chr1:135770524-135771765 1190 1.11e-05 CACAACAAAC CATTTCCTCCAACTCCTCCCA CATTTTGGTA chr10:45311444-45312243 365 1.48e-05 GGCAGAGGCC CTTTCCTGCCCATCACCTGCT CCTGTCAGTT chr7:45460723-45461396 461 4.02e-05 GGTCAGAGTT ACTCATTAACCACAGTGCTCC AGAACCTGAC chr1:134092570-134093219 72 4.49e-05 CCAGGTTCCT CCCCATCGCCCAGTGACCACT GGAAAACTGA chr1:92787053-92787745 362 1.55e-04 TGGGCAGCTG ACTTCACGCCACAAGCATGCT GGGCAGCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:91413901-91414660 2.3e-09 191_[+2]_547 chr3:88138602-88139038 4.3e-08 184_[+2]_231 chr8:123884590-123885381 5.1e-08 432_[+2]_338 chr1:134244219-134245778 1.6e-07 1196_[+2]_342 chr3:87982114-87984371 2.3e-07 192_[+2]_2044 chr1:135861587-135863192 3e-07 1284_[+2]_300 chr1:135668102-135668958 4.3e-07 447_[+2]_388 chr16:47842998-47843731 4.8e-07 690_[+2]_22 chr1:134195091-134196873 9.4e-07 1182_[+2]_579 chrX:167091787-167092426 1.2e-06 277_[+2]_341 chr6:72259181-72260517 1.3e-06 636_[+2]_679 chr1:134098990-134100352 1.6e-06 1027_[+2]_314 chr15:34795064-34795760 1.6e-06 482_[+2]_193 chr1:135843983-135845220 1.7e-06 1044_[+2]_172 chr1:135534977-135536185 2.5e-06 165_[+2]_1022 chr1:134079056-134080037 3.6e-06 830_[+2]_130 chr1:75344260-75345310 5.1e-06 524_[+2]_505 chr15:85698553-85699119 5.1e-06 35_[+2]_510 chr1:136228027-136229131 6e-06 881_[+2]_202 chr1:135770524-135771765 1.1e-05 1189_[+2]_31 chr10:45311444-45312243 1.5e-05 364_[+2]_414 chr7:45460723-45461396 4e-05 460_[+2]_192 chr1:134092570-134093219 4.5e-05 71_[+2]_557 chr1:92787053-92787745 0.00015 361_[+2]_310 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=21 seqs=24 chr1:91413901-91414660 ( 192) CCCCCATCCCCACTACCCCCA 1 chr3:88138602-88139038 ( 185) CCCCCACCCCCACATCCTGCC 1 chr8:123884590-123885381 ( 433) TCCTCCTCCCCACCCCACCCC 1 chr1:134244219-134245778 ( 1197) CCTCCACCCCCCCCTTTCCCC 1 chr3:87982114-87984371 ( 193) CCCTGTCCCCCCCTCCCCCCC 1 chr1:135861587-135863192 ( 1285) CTCTCCTACCCACACCACTCC 1 chr1:135668102-135668958 ( 448) CACTCCTCCCCAGCCCACTCC 1 chr16:47842998-47843731 ( 691) CCCCACTCCCCATATTTTCCT 1 chr1:134195091-134196873 ( 1183) GCTCAGTCCCCACACCATCCC 1 chrX:167091787-167092426 ( 278) CTCTATTTCCCACCACACCCA 1 chr6:72259181-72260517 ( 637) CCTCCATCCCCACACTCTGTC 1 chr1:134098990-134100352 ( 1028) GCTCCATCACCACCTCTCCCA 1 chr15:34795064-34795760 ( 483) GCTTAACCCTCACTGTCCTCC 1 chr1:135843983-135845220 ( 1045) ACTTCACCCCAACTAGTCCCC 1 chr1:135534977-135536185 ( 166) CTTTTCCCCCCAGTCTTTTCT 1 chr1:134079056-134080037 ( 831) CCCTGCCCCTCCCTCTTCCCT 1 chr1:75344260-75345310 ( 525) TCCCCTCCCCCACTGGGCCCT 1 chr15:85698553-85699119 ( 36) CACTATTTCCCAGAATCCTCT 1 chr1:136228027-136229131 ( 882) GTCCGACCCCCAGAGCTTCCA 1 chr1:135770524-135771765 ( 1190) CATTTCCTCCAACTCCTCCCA 1 chr10:45311444-45312243 ( 365) CTTTCCTGCCCATCACCTGCT 1 chr7:45460723-45461396 ( 461) ACTCATTAACCACAGTGCTCC 1 chr1:134092570-134093219 ( 72) CCCCATCGCCCAGTGACCACT 1 chr1:92787053-92787745 ( 362) ACTTCACGCCACAAGCATGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 24531 bayes= 10.4438 E= 9.3e-005 -87 121 -68 -149 -87 130 -1123 -17 -1123 100 -1123 97 -1123 76 -1123 121 35 88 -109 -149 71 30 -268 10 -1123 88 -1123 110 -145 130 -109 -90 -145 176 -1123 -1123 -1123 176 -1123 -149 -87 169 -1123 -1123 187 -70 -1123 -1123 -245 130 -36 -149 71 -12 -1123 68 -13 47 -9 -49 -245 100 -168 51 13 30 -168 51 -1123 130 -1123 51 -245 100 -68 10 -1123 182 -1123 -248 -13 76 -1123 51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 24 E= 9.3e-005 0.125000 0.625000 0.166667 0.083333 0.125000 0.666667 0.000000 0.208333 0.000000 0.541667 0.000000 0.458333 0.000000 0.458333 0.000000 0.541667 0.291667 0.500000 0.125000 0.083333 0.375000 0.333333 0.041667 0.250000 0.000000 0.500000 0.000000 0.500000 0.083333 0.666667 0.125000 0.125000 0.083333 0.916667 0.000000 0.000000 0.000000 0.916667 0.000000 0.083333 0.125000 0.875000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.041667 0.666667 0.208333 0.083333 0.375000 0.250000 0.000000 0.375000 0.208333 0.375000 0.250000 0.166667 0.041667 0.541667 0.083333 0.333333 0.250000 0.333333 0.083333 0.333333 0.000000 0.666667 0.000000 0.333333 0.041667 0.541667 0.166667 0.250000 0.000000 0.958333 0.000000 0.041667 0.208333 0.458333 0.000000 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- C[CT][CT][TC][CA][ACT][CT]CCCCA[CG][ATC][CGA][CT][CTA][CT][CT]C[CTA] -------------------------------------------------------------------------------- Time 44.74 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 14 sites = 24 llr = 237 E-value = 1.1e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 6333874918:115 pos.-specific C ::::1::::::391 probability G :677135:8:95:1 matrix T 4:::::21:1:1:3 bits 2.1 1.9 1.7 * 1.5 * * Relative 1.3 * ** * Entropy 1.1 * * * **** * (14.2 bits) 0.9 ****** **** * 0.6 *********** * 0.4 *********** ** 0.2 ************** 0.0 -------------- Multilevel AGGGAAGAGAGGCA consensus TAAA GA C T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------- chr1:75344260-75345310 772 2.06e-07 GGGATGTTCG TGGGAAAAGAGCCT CTTGGGGGTC chr3:88138602-88139038 3 2.49e-07 GC TGGGAATAGAGGCA AGAAAATGGC chr3:87982114-87984371 1637 3.43e-07 TCCTGAGAGG AGGGAGAAGAGCCT GAACTACCCT chr1:134195091-134196873 62 4.27e-07 CTCTAATGAA AAGAAAAAGAGGCT GTATAAAGGG chr1:134244219-134245778 107 9.25e-07 AGGCTGAGGG AGGGCAGAGAGGCT ACAGATCAAC chr15:34795064-34795760 453 1.13e-06 CAGAAGAGAG AAGGAAGAAAGCCA GGCCCAGAGG chr7:45460723-45461396 115 1.44e-06 CTCAGAAGCC TGGGAAGAGAGCAA AGGGAAACGA chrX:167091787-167092426 172 2.05e-06 CCTAGGCTCT AGAGCAAAGAGCCA CTGACTGACT chr1:135843983-135845220 476 2.05e-06 CCTGGAGGGT TGAAAGAAGAGGCA CCCCAGGACT chr1:134098990-134100352 82 2.25e-06 TGCCTGTATT TGGGAGAAGAGACA CCATCTGGCT chr1:91413901-91414660 322 5.43e-06 CCGCTTCCGC AGAGAAAAGCGGCA GGCCGGCCAG chr1:135861587-135863192 131 7.10e-06 AGTTCTAGAA AAGACAGAGAGCCT TGTAACTCTG chr6:72259181-72260517 458 8.76e-06 TAGCATGCCC AAAGAGAAGTGGCT GGTGCTAAAA chr1:136228027-136229131 460 8.76e-06 GGCGGAGGTC TGGAAGGAGAGGCC AGCCACCTCC chr1:135770524-135771765 776 1.03e-05 GAACTGCAGA AGAGAAGAAAGGAT GGATCTCCAG chr1:92787053-92787745 616 1.88e-05 GTTGTATGTG AAGGAAGAGACTCT ACCTTCCTCG chr10:45311444-45312243 508 2.40e-05 TGCCATGCTC AGGGTGGAGAGACA GAGCCTGGTA chr1:135534977-135536185 250 3.28e-05 GCACTTTAAA AAGCAAAAGAGCCG TAAAAGTCAG chr8:123884590-123885381 359 5.07e-05 GGCAATGGTA TAAAAATAGAAGCA GGCAGTGGGC chr1:134079056-134080037 651 5.81e-05 CACTGTTTGG TGGGAGGAGTGTCG AGGAGAGTAT chr1:135668102-135668958 402 5.81e-05 TGGCCTTGAA TGGGGAGTGAGTCA CGGGGCCTGG chr15:85698553-85699119 206 5.81e-05 GTGGCTTCTC ACGGAGTAGAGGCC CTTAGGAATT chr1:134092570-134093219 303 2.09e-04 TTCCGGTCTC AAAGGATTAAGGCA TCTGTGACTG chr16:47842998-47843731 317 2.32e-04 ATATCAGAGC AGAAAAGACTGCAA AAGCACTTAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:75344260-75345310 2.1e-07 771_[+3]_265 chr3:88138602-88139038 2.5e-07 2_[+3]_420 chr3:87982114-87984371 3.4e-07 1636_[+3]_607 chr1:134195091-134196873 4.3e-07 61_[+3]_1707 chr1:134244219-134245778 9.2e-07 106_[+3]_1439 chr15:34795064-34795760 1.1e-06 452_[+3]_230 chr7:45460723-45461396 1.4e-06 114_[+3]_545 chrX:167091787-167092426 2.1e-06 171_[+3]_454 chr1:135843983-135845220 2.1e-06 475_[+3]_748 chr1:134098990-134100352 2.3e-06 81_[+3]_1267 chr1:91413901-91414660 5.4e-06 321_[+3]_424 chr1:135861587-135863192 7.1e-06 130_[+3]_1461 chr6:72259181-72260517 8.8e-06 457_[+3]_865 chr1:136228027-136229131 8.8e-06 459_[+3]_631 chr1:135770524-135771765 1e-05 775_[+3]_452 chr1:92787053-92787745 1.9e-05 615_[+3]_63 chr10:45311444-45312243 2.4e-05 507_[+3]_278 chr1:135534977-135536185 3.3e-05 249_[+3]_945 chr8:123884590-123885381 5.1e-05 358_[+3]_419 chr1:134079056-134080037 5.8e-05 650_[+3]_317 chr1:135668102-135668958 5.8e-05 401_[+3]_441 chr15:85698553-85699119 5.8e-05 205_[+3]_347 chr1:134092570-134093219 0.00021 302_[+3]_333 chr16:47842998-47843731 0.00023 316_[+3]_403 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=14 seqs=24 chr1:75344260-75345310 ( 772) TGGGAAAAGAGCCT 1 chr3:88138602-88139038 ( 3) TGGGAATAGAGGCA 1 chr3:87982114-87984371 ( 1637) AGGGAGAAGAGCCT 1 chr1:134195091-134196873 ( 62) AAGAAAAAGAGGCT 1 chr1:134244219-134245778 ( 107) AGGGCAGAGAGGCT 1 chr15:34795064-34795760 ( 453) AAGGAAGAAAGCCA 1 chr7:45460723-45461396 ( 115) TGGGAAGAGAGCAA 1 chrX:167091787-167092426 ( 172) AGAGCAAAGAGCCA 1 chr1:135843983-135845220 ( 476) TGAAAGAAGAGGCA 1 chr1:134098990-134100352 ( 82) TGGGAGAAGAGACA 1 chr1:91413901-91414660 ( 322) AGAGAAAAGCGGCA 1 chr1:135861587-135863192 ( 131) AAGACAGAGAGCCT 1 chr6:72259181-72260517 ( 458) AAAGAGAAGTGGCT 1 chr1:136228027-136229131 ( 460) TGGAAGGAGAGGCC 1 chr1:135770524-135771765 ( 776) AGAGAAGAAAGGAT 1 chr1:92787053-92787745 ( 616) AAGGAAGAGACTCT 1 chr10:45311444-45312243 ( 508) AGGGTGGAGAGACA 1 chr1:135534977-135536185 ( 250) AAGCAAAAGAGCCG 1 chr8:123884590-123885381 ( 359) TAAAAATAGAAGCA 1 chr1:134079056-134080037 ( 651) TGGGAGGAGTGTCG 1 chr1:135668102-135668958 ( 402) TGGGGAGTGAGTCA 1 chr15:85698553-85699119 ( 206) ACGGAGTAGAGGCC 1 chr1:134092570-134093219 ( 303) AAAGGATTAAGGCA 1 chr16:47842998-47843731 ( 317) AGAAAAGACTGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 24699 bayes= 10.0058 E= 1.1e-003 145 -1123 -1123 68 54 -270 123 -1123 54 -1123 132 -1123 13 -270 141 -1123 171 -112 -168 -248 154 -1123 32 -1123 71 -1123 78 -49 200 -1123 -1123 -149 -87 -270 164 -1123 187 -270 -1123 -90 -245 -270 178 -1123 -145 30 78 -90 -87 169 -1123 -1123 113 -170 -168 51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 24 E= 1.1e-003 0.625000 0.000000 0.000000 0.375000 0.333333 0.041667 0.625000 0.000000 0.333333 0.000000 0.666667 0.000000 0.250000 0.041667 0.708333 0.000000 0.750000 0.125000 0.083333 0.041667 0.666667 0.000000 0.333333 0.000000 0.375000 0.000000 0.458333 0.166667 0.916667 0.000000 0.000000 0.083333 0.125000 0.041667 0.833333 0.000000 0.833333 0.041667 0.000000 0.125000 0.041667 0.041667 0.916667 0.000000 0.083333 0.333333 0.458333 0.125000 0.125000 0.875000 0.000000 0.000000 0.500000 0.083333 0.083333 0.333333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- [AT][GA][GA][GA]A[AG][GA]AGAG[GC]C[AT] -------------------------------------------------------------------------------- Time 66.51 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 8 sites = 24 llr = 204 E-value = 1.0e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 14:8:::: pos.-specific C ::9::a:: probability G 851:a::a matrix T :1:2::a: bits 2.1 * 1.9 * ** 1.7 **** 1.5 ****** Relative 1.3 ****** Entropy 1.1 * ****** (12.3 bits) 0.9 * ****** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCAGCTG consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr7:45460723-45461396 370 2.00e-05 TGTGTGGTCA GGCAGCTG TACGGCTCTG chr3:87982114-87984371 327 2.00e-05 GTAAACTCTT GGCAGCTG TGTAGGAGAC chr1:92787053-92787745 354 2.00e-05 GGCCGGGCTG GGCAGCTG ACTTCACGCC chr1:136228027-136229131 403 2.00e-05 GGCCAGGGTT GGCAGCTG TTAGCCAGAG chr1:134244219-134245778 937 2.00e-05 CAGGAGGGGT GGCAGCTG TTTCCCTCGG chr1:134195091-134196873 1218 2.00e-05 GGACAGGAAT GGCAGCTG CTGCAGCTTC chr1:91413901-91414660 301 2.00e-05 CGTGACAGTT GGCAGCTG CAGCCGCTTC chr1:135770524-135771765 852 2.00e-05 AGGCTCCACG GGCAGCTG TGTCACCAGG chr10:45311444-45312243 305 2.00e-05 CTGTGAGGCA GGCAGCTG GTGGATGAAT chr8:123884590-123885381 416 3.72e-05 TGGCTCTGTC GACAGCTG CTGCCCGGCT chr1:134098990-134100352 1301 3.72e-05 CCTGAACACG GACAGCTG TGCCCCGTGG chr1:135668102-135668958 297 3.72e-05 CCAGCTGAGA GACAGCTG TGCCCCAGGC chr15:85698553-85699119 270 3.72e-05 GAGTTATCCG GACAGCTG TAGTTGCACA chr1:134092570-134093219 504 5.76e-05 AGGAGGGCGG GGCTGCTG CGCAGGGCGG chr16:47842998-47843731 211 7.51e-05 GTCTTGAAAG GACTGCTG GGAAATTTAG chr1:135861587-135863192 882 1.10e-04 GGAGGGGTGA GTCAGCTG CTCTGCCTCG chr1:135534977-135536185 514 1.10e-04 AGGAGGCTGG AGCAGCTG CCTCTGCCCT chr1:75344260-75345310 843 1.10e-04 GGGAATCCCC AGCAGCTG GCAATCGGCC chr6:72259181-72260517 31 1.61e-04 GGGTGGACTG GAGAGCTG GCTCAGCAGT chr15:34795064-34795760 117 1.61e-04 CCCGTTCCCT GAGAGCTG TCTGGATCTA chr3:88138602-88139038 214 1.79e-04 CCCACCCAAC TGCAGCTG CCACCACATC chrX:167091787-167092426 250 2.49e-04 GCCCTGTTCT GTCTGCTG ATCTTGTGAG chr1:135843983-135845220 781 2.81e-04 TGAAAATAGA AACTGCTG GCAACCTTCT chr1:134079056-134080037 951 4.68e-04 GGGGCTCAGG GACTGGTG CCAGGAAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:45460723-45461396 2e-05 369_[+4]_296 chr3:87982114-87984371 2e-05 326_[+4]_1923 chr1:92787053-92787745 2e-05 353_[+4]_331 chr1:136228027-136229131 2e-05 402_[+4]_694 chr1:134244219-134245778 2e-05 936_[+4]_615 chr1:134195091-134196873 2e-05 1217_[+4]_557 chr1:91413901-91414660 2e-05 300_[+4]_451 chr1:135770524-135771765 2e-05 851_[+4]_382 chr10:45311444-45312243 2e-05 304_[+4]_487 chr8:123884590-123885381 3.7e-05 415_[+4]_368 chr1:134098990-134100352 3.7e-05 1300_[+4]_54 chr1:135668102-135668958 3.7e-05 296_[+4]_552 chr15:85698553-85699119 3.7e-05 269_[+4]_289 chr1:134092570-134093219 5.8e-05 503_[+4]_138 chr16:47842998-47843731 7.5e-05 210_[+4]_515 chr1:135861587-135863192 0.00011 881_[+4]_716 chr1:135534977-135536185 0.00011 513_[+4]_687 chr1:75344260-75345310 0.00011 842_[+4]_200 chr6:72259181-72260517 0.00016 30_[+4]_1298 chr15:34795064-34795760 0.00016 116_[+4]_572 chr3:88138602-88139038 0.00018 213_[+4]_215 chrX:167091787-167092426 0.00025 249_[+4]_382 chr1:135843983-135845220 0.00028 780_[+4]_449 chr1:134079056-134080037 0.00047 950_[+4]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=8 seqs=24 chr7:45460723-45461396 ( 370) GGCAGCTG 1 chr3:87982114-87984371 ( 327) GGCAGCTG 1 chr1:92787053-92787745 ( 354) GGCAGCTG 1 chr1:136228027-136229131 ( 403) GGCAGCTG 1 chr1:134244219-134245778 ( 937) GGCAGCTG 1 chr1:134195091-134196873 ( 1218) GGCAGCTG 1 chr1:91413901-91414660 ( 301) GGCAGCTG 1 chr1:135770524-135771765 ( 852) GGCAGCTG 1 chr10:45311444-45312243 ( 305) GGCAGCTG 1 chr8:123884590-123885381 ( 416) GACAGCTG 1 chr1:134098990-134100352 ( 1301) GACAGCTG 1 chr1:135668102-135668958 ( 297) GACAGCTG 1 chr15:85698553-85699119 ( 270) GACAGCTG 1 chr1:134092570-134093219 ( 504) GGCTGCTG 1 chr16:47842998-47843731 ( 211) GACTGCTG 1 chr1:135861587-135863192 ( 882) GTCAGCTG 1 chr1:135534977-135536185 ( 514) AGCAGCTG 1 chr1:75344260-75345310 ( 843) AGCAGCTG 1 chr6:72259181-72260517 ( 31) GAGAGCTG 1 chr15:34795064-34795760 ( 117) GAGAGCTG 1 chr3:88138602-88139038 ( 214) TGCAGCTG 1 chrX:167091787-167092426 ( 250) GTCTGCTG 1 chr1:135843983-135845220 ( 781) AACTGCTG 1 chr1:134079056-134080037 ( 951) GACTGGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 24843 bayes= 10.462 E= 1.0e-002 -87 -1123 164 -248 71 -1123 102 -149 -1123 176 -168 -1123 179 -1123 -1123 -17 -1123 -1123 191 -1123 -1123 182 -268 -1123 -1123 -1123 -1123 210 -1123 -1123 191 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 1.0e-002 0.125000 0.000000 0.833333 0.041667 0.375000 0.000000 0.541667 0.083333 0.000000 0.916667 0.083333 0.000000 0.791667 0.000000 0.000000 0.208333 0.000000 0.000000 1.000000 0.000000 0.000000 0.958333 0.041667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- G[GA]C[AT]GCTG -------------------------------------------------------------------------------- Time 87.74 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 11 sites = 24 llr = 218 E-value = 4.8e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A :3:::1::::: pos.-specific C 973a13957:6 probability G :::::51:::1 matrix T 1:8:92:5393 bits 2.1 1.9 * 1.7 ** 1.5 * ** * * Relative 1.3 * *** * * Entropy 1.1 * *** **** (13.1 bits) 0.9 ***** **** 0.6 ***** ***** 0.4 ***** ***** 0.2 *********** 0.0 ----------- Multilevel CCTCTGCTCTC consensus AC C CT T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr6:72259181-72260517 155 3.17e-07 CTGACCAATA CCTCTGCTCTC TGCAGGTATC chr1:134244219-134245778 1182 3.17e-07 CTCTCCTTGT CCTCTGCTCTC TGGGCCTCCA chr3:88138602-88139038 320 1.28e-06 GCTCCAGGGC CCTCTGCTCTT GTCCCCAGGT chr1:134079056-134080037 174 2.24e-06 CGGTGTCTCG CCTCTCCCCTC CGCCTGCGCC chrX:167091787-167092426 628 4.85e-06 GACCCTTCTG CCTCTCCTTTC T chr1:135668102-135668958 470 4.85e-06 GCCCACTCCA CATCTGCCCTC CAGATGTCTG chr7:45460723-45461396 662 9.14e-06 AAAATGGCTT CCTCTTCCCTT C chr1:135534977-135536185 522 1.02e-05 GGAGCAGCTG CCTCTGCCCTG CTTCTGGGGG chr1:92787053-92787745 67 1.21e-05 ATCCTGCCAG CCTCTTCCTTC TGACGCTTTG chr3:87982114-87984371 1851 1.35e-05 CTTCTAGCTT CCCCTGCTTTC TCCACCCTGA chr1:135843983-135845220 437 1.35e-05 TGGCCACCTT CCTCTACTCTT ATGCTACCTG chr1:134195091-134196873 631 1.92e-05 AGCTGCGGGA CATCTGCTCTG GTGGTTTTCA chr8:123884590-123885381 485 2.17e-05 CAACAGCACC CCCCTTCCCTC TGCTGTCCCT chr15:85698553-85699119 18 2.30e-05 GCTCTCCCTG CATCTCCTTTT AGTCTCTCAC chr1:135861587-135863192 683 2.57e-05 CAGAGTGTGT CCTCTGGCCTC CGCTGGCCTT chr1:134092570-134093219 192 2.57e-05 GCTGATATGC TCTCTGCTCTT TGGAGGAAAC chr1:135770524-135771765 520 2.72e-05 ACCAACTTCC CCCCTGCTCTG GCAGCCAGGG chr1:91413901-91414660 161 5.97e-05 TCTCCACGCT CACCTCCCTTC CCCGCGAGTC chr15:34795064-34795760 560 6.51e-05 GACAATGACC CCTCCCCCCTT CTTGGATGTT chr1:134098990-134100352 996 9.26e-05 CTTTGCTCAT CATCTTGTCTC ATGCCTGTTC chr1:75344260-75345310 546 1.06e-04 ACTGGGCCCT CCTCTCCTTGC AGCCCCTCCC chr10:45311444-45312243 57 1.45e-04 AGGGTAATGC CGCCTGCCCTT GAGAATCCTT chr1:136228027-136229131 477 2.35e-04 AGAGGCCAGC CACCTCCTCAC TGAGTCAGCC chr16:47842998-47843731 721 5.11e-04 TTGTTCTCCT TCTCCACCTTC TG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:72259181-72260517 3.2e-07 154_[+5]_1171 chr1:134244219-134245778 3.2e-07 1181_[+5]_367 chr3:88138602-88139038 1.3e-06 319_[+5]_106 chr1:134079056-134080037 2.2e-06 173_[+5]_797 chrX:167091787-167092426 4.9e-06 627_[+5]_1 chr1:135668102-135668958 4.9e-06 469_[+5]_376 chr7:45460723-45461396 9.1e-06 661_[+5]_1 chr1:135534977-135536185 1e-05 521_[+5]_676 chr1:92787053-92787745 1.2e-05 66_[+5]_615 chr3:87982114-87984371 1.3e-05 1850_[+5]_396 chr1:135843983-135845220 1.3e-05 436_[+5]_790 chr1:134195091-134196873 1.9e-05 630_[+5]_1141 chr8:123884590-123885381 2.2e-05 484_[+5]_296 chr15:85698553-85699119 2.3e-05 17_[+5]_538 chr1:135861587-135863192 2.6e-05 682_[+5]_912 chr1:134092570-134093219 2.6e-05 191_[+5]_447 chr1:135770524-135771765 2.7e-05 519_[+5]_711 chr1:91413901-91414660 6e-05 160_[+5]_588 chr15:34795064-34795760 6.5e-05 559_[+5]_126 chr1:134098990-134100352 9.3e-05 995_[+5]_356 chr1:75344260-75345310 0.00011 545_[+5]_494 chr10:45311444-45312243 0.00014 56_[+5]_732 chr1:136228027-136229131 0.00023 476_[+5]_617 chr16:47842998-47843731 0.00051 720_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=11 seqs=24 chr6:72259181-72260517 ( 155) CCTCTGCTCTC 1 chr1:134244219-134245778 ( 1182) CCTCTGCTCTC 1 chr3:88138602-88139038 ( 320) CCTCTGCTCTT 1 chr1:134079056-134080037 ( 174) CCTCTCCCCTC 1 chrX:167091787-167092426 ( 628) CCTCTCCTTTC 1 chr1:135668102-135668958 ( 470) CATCTGCCCTC 1 chr7:45460723-45461396 ( 662) CCTCTTCCCTT 1 chr1:135534977-135536185 ( 522) CCTCTGCCCTG 1 chr1:92787053-92787745 ( 67) CCTCTTCCTTC 1 chr3:87982114-87984371 ( 1851) CCCCTGCTTTC 1 chr1:135843983-135845220 ( 437) CCTCTACTCTT 1 chr1:134195091-134196873 ( 631) CATCTGCTCTG 1 chr8:123884590-123885381 ( 485) CCCCTTCCCTC 1 chr15:85698553-85699119 ( 18) CATCTCCTTTT 1 chr1:135861587-135863192 ( 683) CCTCTGGCCTC 1 chr1:134092570-134093219 ( 192) TCTCTGCTCTT 1 chr1:135770524-135771765 ( 520) CCCCTGCTCTG 1 chr1:91413901-91414660 ( 161) CACCTCCCTTC 1 chr15:34795064-34795760 ( 560) CCTCCCCCCTT 1 chr1:134098990-134100352 ( 996) CATCTTGTCTC 1 chr1:75344260-75345310 ( 546) CCTCTCCTTGC 1 chr10:45311444-45312243 ( 57) CGCCTGCCCTT 1 chr1:136228027-136229131 ( 477) CACCTCCTCAC 1 chr16:47842998-47843731 ( 721) TCTCCACCTTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 24771 bayes= 10.4578 E= 4.8e-002 -1123 176 -1123 -149 13 139 -268 -1123 -1123 -12 -1123 168 -1123 188 -1123 -1123 -1123 -170 -1123 197 -145 11 78 -49 -1123 176 -168 -1123 -1123 76 -1123 121 -1123 139 -1123 32 -245 -1123 -268 197 -1123 111 -109 32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 24 E= 4.8e-002 0.000000 0.916667 0.000000 0.083333 0.250000 0.708333 0.041667 0.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.083333 0.000000 0.916667 0.083333 0.291667 0.458333 0.166667 0.000000 0.916667 0.083333 0.000000 0.000000 0.458333 0.000000 0.541667 0.000000 0.708333 0.000000 0.291667 0.041667 0.000000 0.041667 0.916667 0.000000 0.583333 0.125000 0.291667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- C[CA][TC]CT[GC]C[TC][CT]T[CT] -------------------------------------------------------------------------------- Time 108.76 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 25 sites = 8 llr = 163 E-value = 3.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A :::::11::::::1:::3::1::1: pos.-specific C :1:3:::3:1:34::43:11:3:1: probability G :5:818:8:838:614:616:516: matrix T a4a:919:a18:639381839391a bits 2.1 * * * * 1.9 * * * * 1.7 * * * * 1.5 * * * * * * * * * Relative 1.3 * * * * * * * * * * * Entropy 1.1 * *** *** *** * * * * * * (29.5 bits) 0.9 * *********** * * * * * * 0.6 *************** ***** * * 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel TGTGTGTGTGTGTGTCTGTGTGTGT consensus T C C GCCT GCA T C sequence T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr6:72259181-72260517 1044 1.67e-15 GTCCCAGATT TGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT chr1:134079056-134080037 730 1.67e-15 TGGCAGTGTC TGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT chr1:91413901-91414660 484 1.67e-15 GCGGGAGGGG TGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGT chr1:134195091-134196873 1369 1.89e-09 AGAGCAGACG TTTGTGTGTCTGCTTTCACTTCTGT ACAAAGAACT chr1:75344260-75345310 1013 2.01e-09 GGCTTTAGCG TGTGGGTGTGGGTGTCCATCTCTTT TGCCCTACAG chr1:134092570-134093219 317 7.38e-09 GATTAAGGCA TCTGTGACTGGCCATCTGTGTTTCT ACCTAGCTTT chr1:135534977-135536185 881 1.04e-08 CTTTTCTTTC TTTCTTTCTTTCCTTTTTTTTTTGT TTTTTGTTTT chr1:134244219-134245778 697 1.43e-08 ACTATCGACT TTTCTATGTGTGTGGCTGGGAGGAT TTGGTGGTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6:72259181-72260517 1.7e-15 1043_[+6]_268 chr1:134079056-134080037 1.7e-15 729_[+6]_227 chr1:91413901-91414660 1.7e-15 483_[+6]_251 chr1:134195091-134196873 1.9e-09 1368_[+6]_389 chr1:75344260-75345310 2e-09 1012_[+6]_13 chr1:134092570-134093219 7.4e-09 316_[+6]_308 chr1:135534977-135536185 1e-08 880_[+6]_303 chr1:134244219-134245778 1.4e-08 696_[+6]_838 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=25 seqs=8 chr6:72259181-72260517 ( 1044) TGTGTGTGTGTGTGTGTGTGTGTGT 1 chr1:134079056-134080037 ( 730) TGTGTGTGTGTGTGTGTGTGTGTGT 1 chr1:91413901-91414660 ( 484) TGTGTGTGTGTGTGTGTGTGTGTGT 1 chr1:134195091-134196873 ( 1369) TTTGTGTGTCTGCTTTCACTTCTGT 1 chr1:75344260-75345310 ( 1013) TGTGGGTGTGGGTGTCCATCTCTTT 1 chr1:134092570-134093219 ( 317) TCTGTGACTGGCCATCTGTGTTTCT 1 chr1:135534977-135536185 ( 881) TTTCTTTCTTTCCTTTTTTTTTTGT 1 chr1:134244219-134245778 ( 697) TTTCTATGTGTGTGGCTGGGAGGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 24435 bayes= 12.3133 E= 3.8e-001 -965 -965 -965 210 -965 -111 91 68 -965 -965 -965 210 -965 -12 149 -965 -965 -965 -109 190 -87 -965 149 -90 -87 -965 -965 190 -965 -12 149 -965 -965 -965 -965 210 -965 -111 149 -90 -965 -965 -9 168 -965 -12 149 -965 -965 47 -965 142 -87 -965 123 10 -965 -965 -109 190 -965 47 49 10 -965 -12 -965 168 13 -965 123 -90 -965 -111 -109 168 -965 -111 123 10 -87 -965 -965 190 -965 -12 91 10 -965 -965 -109 190 -87 -111 123 -90 -965 -965 -965 210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 8 E= 3.8e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.500000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.125000 0.875000 0.125000 0.000000 0.750000 0.125000 0.125000 0.000000 0.000000 0.875000 0.000000 0.250000 0.750000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.125000 0.750000 0.125000 0.000000 0.000000 0.250000 0.750000 0.000000 0.250000 0.750000 0.000000 0.000000 0.375000 0.000000 0.625000 0.125000 0.000000 0.625000 0.250000 0.000000 0.000000 0.125000 0.875000 0.000000 0.375000 0.375000 0.250000 0.000000 0.250000 0.000000 0.750000 0.250000 0.000000 0.625000 0.125000 0.000000 0.125000 0.125000 0.750000 0.000000 0.125000 0.625000 0.250000 0.125000 0.000000 0.000000 0.875000 0.000000 0.250000 0.500000 0.250000 0.000000 0.000000 0.125000 0.875000 0.125000 0.125000 0.625000 0.125000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- T[GT]T[GC]TGT[GC]TG[TG][GC][TC][GT]T[CGT][TC][GA]T[GT]T[GCT]TGT -------------------------------------------------------------------------------- Time 129.41 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 15 sites = 24 llr = 230 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A ::512126::311:3 pos.-specific C 5a:1498::3:2762 probability G 3::82:::a835::: matrix T 2:5:2::4::42245 bits 2.1 1.9 * * 1.7 * * 1.5 * * Relative 1.3 * ** * Entropy 1.1 ** ***** * (13.8 bits) 0.9 *** ***** * 0.6 *** ***** *** 0.4 **** ***** *** 0.2 **** ********** 0.0 --------------- Multilevel CCAGCCCAGGTGCCT consensus G T A T CATTTA sequence G G C T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr3:87982114-87984371 1950 3.17e-07 TCAGCCCTCT CCAGCCCTGGTGCCC AGGGGCTCCT chr1:134092570-134093219 57 3.17e-07 AAGATGGATA CCAGGCCAGGTTCCT CCCCATCGCC chr1:134195091-134196873 960 4.82e-07 GAGTGGAGGC CCTGTCCAGGATCCT GGGCTGCTCA chr8:123884590-123885381 78 8.74e-07 TCCCAGGAAG GCAGCCCTGGGGCTT CTGTCTGTGG chr1:75344260-75345310 58 1.24e-06 TTGAGTCCTC CCTGGCCAGGACCCT CTCCAGTGAC chr1:135668102-135668958 309 3.50e-06 CAGCTGTGCC CCAGGCCAGGGACCA CTGTGCAGCC chr1:134098990-134100352 633 4.01e-06 ATGATATCAC CCTGCCCTGCTGTCT GCCATTCTTA chr1:92787053-92787745 385 4.55e-06 AGCATGCTGG GCAGCCCAGCTGTCT GGGGCCGCAC chr1:136228027-136229131 41 5.16e-06 CAAAGCCAAG GCTGGCCAGGGGCCC AAGGACCGGT chr15:85698553-85699119 395 6.53e-06 CTGTCACAGC CCTGCCCTGGACTCA TGTGGACAGT chr1:135843983-135845220 608 1.12e-05 TTCTTCTCCC TCTGCCAAGGGGCCA CCACTTGTCA chr1:135861587-135863192 562 1.51e-05 GTAGGAATGA CCTCACCAGGTTCTT GTGGGGATTA chr1:135534977-135536185 960 1.66e-05 TGTAGCCCTG GCAGTCCTGGAACTC ACTCTGTAGA chr1:134244219-134245778 1239 1.66e-05 TCGCCCACAT GCTGCCCAGCTGTCC CTGTCCCTGT chr15:34795064-34795760 235 2.17e-05 TCTGCGCTGA CCACTCCAGCAGCCA TGTGACTGAA chr6:72259181-72260517 959 2.59e-05 TGCAAGCAAG GCTGACCTGGACACT GGATGTGTAA chr16:47842998-47843731 5 3.31e-05 CACT CCAAACCAGGAGATA ATGGGGCCTT chr1:91413901-91414660 32 4.18e-05 CCAACTGCCC CCAGTCAAGCTTCTC CTTCCTTGTT chr3:88138602-88139038 335 5.21e-05 GCTCTTGTCC CCAGGTCTGGTCCCA AGGCACCCGG chr10:45311444-45312243 625 5.59e-05 GGCATGCCCT CCAGACCAGGCATTT TTAAGCAGTT chrX:167091787-167092426 412 6.42e-05 GCTACTCTTT TCTACCATGGAGCTT TTATCTACTA chr1:135770524-135771765 380 6.42e-05 TGGAATGCCT GCTGTACTGCTGCTA GGGTAAAAGC chr7:45460723-45461396 88 9.40e-05 CAGGACGGGC TCATACCAGGGTCTA ATCTCAGAAG chr1:134079056-134080037 539 1.92e-04 CCTCGTGTTT TCAGCAATGGGGATT GTATTCTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:87982114-87984371 3.2e-07 1949_[+7]_293 chr1:134092570-134093219 3.2e-07 56_[+7]_578 chr1:134195091-134196873 4.8e-07 959_[+7]_808 chr8:123884590-123885381 8.7e-07 77_[+7]_699 chr1:75344260-75345310 1.2e-06 57_[+7]_978 chr1:135668102-135668958 3.5e-06 308_[+7]_533 chr1:134098990-134100352 4e-06 632_[+7]_715 chr1:92787053-92787745 4.6e-06 384_[+7]_293 chr1:136228027-136229131 5.2e-06 40_[+7]_1049 chr15:85698553-85699119 6.5e-06 394_[+7]_157 chr1:135843983-135845220 1.1e-05 607_[+7]_615 chr1:135861587-135863192 1.5e-05 561_[+7]_1029 chr1:135534977-135536185 1.7e-05 959_[+7]_234 chr1:134244219-134245778 1.7e-05 1238_[+7]_306 chr15:34795064-34795760 2.2e-05 234_[+7]_447 chr6:72259181-72260517 2.6e-05 958_[+7]_363 chr16:47842998-47843731 3.3e-05 4_[+7]_714 chr1:91413901-91414660 4.2e-05 31_[+7]_713 chr3:88138602-88139038 5.2e-05 334_[+7]_87 chr10:45311444-45312243 5.6e-05 624_[+7]_160 chrX:167091787-167092426 6.4e-05 411_[+7]_213 chr1:135770524-135771765 6.4e-05 379_[+7]_847 chr7:45460723-45461396 9.4e-05 87_[+7]_571 chr1:134079056-134080037 0.00019 538_[+7]_428 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=15 seqs=24 chr3:87982114-87984371 ( 1950) CCAGCCCTGGTGCCC 1 chr1:134092570-134093219 ( 57) CCAGGCCAGGTTCCT 1 chr1:134195091-134196873 ( 960) CCTGTCCAGGATCCT 1 chr8:123884590-123885381 ( 78) GCAGCCCTGGGGCTT 1 chr1:75344260-75345310 ( 58) CCTGGCCAGGACCCT 1 chr1:135668102-135668958 ( 309) CCAGGCCAGGGACCA 1 chr1:134098990-134100352 ( 633) CCTGCCCTGCTGTCT 1 chr1:92787053-92787745 ( 385) GCAGCCCAGCTGTCT 1 chr1:136228027-136229131 ( 41) GCTGGCCAGGGGCCC 1 chr15:85698553-85699119 ( 395) CCTGCCCTGGACTCA 1 chr1:135843983-135845220 ( 608) TCTGCCAAGGGGCCA 1 chr1:135861587-135863192 ( 562) CCTCACCAGGTTCTT 1 chr1:135534977-135536185 ( 960) GCAGTCCTGGAACTC 1 chr1:134244219-134245778 ( 1239) GCTGCCCAGCTGTCC 1 chr15:34795064-34795760 ( 235) CCACTCCAGCAGCCA 1 chr6:72259181-72260517 ( 959) GCTGACCTGGACACT 1 chr16:47842998-47843731 ( 5) CCAAACCAGGAGATA 1 chr1:91413901-91414660 ( 32) CCAGTCAAGCTTCTC 1 chr3:88138602-88139038 ( 335) CCAGGTCTGGTCCCA 1 chr10:45311444-45312243 ( 625) CCAGACCAGGCATTT 1 chrX:167091787-167092426 ( 412) TCTACCATGGAGCTT 1 chr1:135770524-135771765 ( 380) GCTGTACTGCTGCTA 1 chr7:45460723-45461396 ( 88) TCATACCAGGGTCTA 1 chr1:134079056-134080037 ( 539) TCAGCAATGGGGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 24675 bayes= 10.0044 E= 2.2e+001 -1123 100 13 -49 -1123 188 -1123 -1123 124 -1123 -1123 97 -145 -170 157 -248 -13 47 -36 -17 -145 169 -1123 -248 -46 162 -1123 -1123 135 -1123 -1123 83 -1123 -1123 191 -1123 -1123 -12 149 -1123 54 -270 -9 68 -87 -70 91 -17 -87 130 -1123 -17 -1123 111 -1123 83 54 -38 -1123 97 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 24 E= 2.2e+001 0.000000 0.541667 0.291667 0.166667 0.000000 1.000000 0.000000 0.000000 0.541667 0.000000 0.000000 0.458333 0.083333 0.083333 0.791667 0.041667 0.208333 0.375000 0.208333 0.208333 0.083333 0.875000 0.000000 0.041667 0.166667 0.833333 0.000000 0.000000 0.583333 0.000000 0.000000 0.416667 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.333333 0.041667 0.250000 0.375000 0.125000 0.166667 0.500000 0.208333 0.125000 0.666667 0.000000 0.208333 0.000000 0.583333 0.000000 0.416667 0.333333 0.208333 0.000000 0.458333 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- [CG]C[AT]G[CAGTA]CC[AT]G[GC][TAG][GT][CT][CT][TAC] -------------------------------------------------------------------------------- Time 150.37 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 14 sites = 24 llr = 229 E-value = 6.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A 13::56:1:3:6:: pos.-specific C 9::43::38:3:32 probability G ::a5::851:7162 matrix T :8::2431:7:316 bits 2.1 1.9 * 1.7 * 1.5 * * Relative 1.3 *** * Entropy 1.1 *** ** ** (13.8 bits) 0.9 *** ** *** 0.6 ******* ****** 0.4 ******* ****** 0.2 ************** 0.0 -------------- Multilevel CTGGAAGGCTGAGT consensus A CCTTC ACTCG sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------- chr8:123884590-123885381 317 5.23e-07 CCTCCACCAA CTGGAAGGCTGATT TCACGCAAGA chr1:134195091-134196873 731 5.23e-07 TGCCTGCAGC CTGGTTGGCAGAGT CCCAGATCCT chr15:34795064-34795760 384 1.34e-06 GGGCTCTGTT CTGCATGGCAGAGG TTCAAAGTCC chr1:134244219-134245778 652 2.08e-06 GGAATGTGAC CAGGAAGCCTCAGT TTTGCCGTCT chr1:75344260-75345310 299 2.08e-06 CCGAGTAAGG CTGGAATGCTGGGT CACCCAGTAG chr1:135861587-135863192 193 2.41e-06 GTGGGAGTAG CTGGATGTCTGAGG AAGTCCATCT chr10:45311444-45312243 148 2.41e-06 CTGGAAAAAA CTGGATGACTGTGT TAGGTTGCTA chr1:92787053-92787745 289 2.77e-06 GGGGTGGGAA CAGCTAGGCAGAGT TCTGAGCTGG chr1:136228027-136229131 601 4.58e-06 GCCTCCGTCG CTGCATGGCAGACG ACTGAGCAGA chr3:87982114-87984371 1377 1.36e-05 GCTGTCAACC CTGCCAGCCTCTCT GGTGGGGGGA chr1:134098990-134100352 156 1.36e-05 CCACACTAAC CTGCCAGACTGAGC TGGGCCGCTC chr1:135770524-135771765 904 1.50e-05 GAATGCCAGG CTGGATGCCAGGCT GCCCTGAGGC chr6:72259181-72260517 1210 1.81e-05 CAGGTTACCC CAGGAATCCTCTGT GTCCATCTCC chr1:135668102-135668958 338 1.99e-05 GCAGCCACAC CTGGCTGGCTAACT CCAGACAGCC chr7:45460723-45461396 274 2.59e-05 ACGCTGAGCT CAGCTAGGCAGTGG GGCGGGCGGC chr16:47842998-47843731 94 2.59e-05 CCAGGGTTGC CTGGAATGGTGATT AAAACTGTAT chr1:91413901-91414660 671 3.89e-05 ACTTCAGTGG CTGCCTGCCTGGGC ACCGTTGAGG chrX:167091787-167092426 194 4.53e-05 CACTGACTGA CTGCCTTGCTCTGC TCTGCTTGAG chr1:134092570-134093219 483 5.64e-05 CCGCCCCGCC CTGGCTGGGACAGG AGGGCGGGGC chr15:85698553-85699119 516 6.05e-05 CACTGCCCCC CTGGTAGTGTCACT GATCCCCCTG chr3:88138602-88139038 164 6.49e-05 GGGGAGACTA CTGTAAGGTTGTGT TTGTCTGCCC chr1:135534977-135536185 576 6.94e-05 TATAGCAGCT CAGCAATTCTCAGC TCCTTTGGCA chr1:134079056-134080037 964 6.94e-05 TGGTGCCAGG AAGCTAGGCAGACT ACTG chr1:135843983-135845220 688 8.42e-05 CATGGTCTGG ATGGCATCCTGTCT CCCTAATCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr8:123884590-123885381 5.2e-07 316_[+8]_461 chr1:134195091-134196873 5.2e-07 730_[+8]_1038 chr15:34795064-34795760 1.3e-06 383_[+8]_299 chr1:134244219-134245778 2.1e-06 651_[+8]_894 chr1:75344260-75345310 2.1e-06 298_[+8]_738 chr1:135861587-135863192 2.4e-06 192_[+8]_1399 chr10:45311444-45312243 2.4e-06 147_[+8]_638 chr1:92787053-92787745 2.8e-06 288_[+8]_390 chr1:136228027-136229131 4.6e-06 600_[+8]_490 chr3:87982114-87984371 1.4e-05 1376_[+8]_867 chr1:134098990-134100352 1.4e-05 155_[+8]_1193 chr1:135770524-135771765 1.5e-05 903_[+8]_324 chr6:72259181-72260517 1.8e-05 1209_[+8]_113 chr1:135668102-135668958 2e-05 337_[+8]_505 chr7:45460723-45461396 2.6e-05 273_[+8]_386 chr16:47842998-47843731 2.6e-05 93_[+8]_626 chr1:91413901-91414660 3.9e-05 670_[+8]_75 chrX:167091787-167092426 4.5e-05 193_[+8]_432 chr1:134092570-134093219 5.6e-05 482_[+8]_153 chr15:85698553-85699119 6.1e-05 515_[+8]_37 chr3:88138602-88139038 6.5e-05 163_[+8]_259 chr1:135534977-135536185 6.9e-05 575_[+8]_619 chr1:134079056-134080037 6.9e-05 963_[+8]_4 chr1:135843983-135845220 8.4e-05 687_[+8]_536 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=14 seqs=24 chr8:123884590-123885381 ( 317) CTGGAAGGCTGATT 1 chr1:134195091-134196873 ( 731) CTGGTTGGCAGAGT 1 chr15:34795064-34795760 ( 384) CTGCATGGCAGAGG 1 chr1:134244219-134245778 ( 652) CAGGAAGCCTCAGT 1 chr1:75344260-75345310 ( 299) CTGGAATGCTGGGT 1 chr1:135861587-135863192 ( 193) CTGGATGTCTGAGG 1 chr10:45311444-45312243 ( 148) CTGGATGACTGTGT 1 chr1:92787053-92787745 ( 289) CAGCTAGGCAGAGT 1 chr1:136228027-136229131 ( 601) CTGCATGGCAGACG 1 chr3:87982114-87984371 ( 1377) CTGCCAGCCTCTCT 1 chr1:134098990-134100352 ( 156) CTGCCAGACTGAGC 1 chr1:135770524-135771765 ( 904) CTGGATGCCAGGCT 1 chr6:72259181-72260517 ( 1210) CAGGAATCCTCTGT 1 chr1:135668102-135668958 ( 338) CTGGCTGGCTAACT 1 chr7:45460723-45461396 ( 274) CAGCTAGGCAGTGG 1 chr16:47842998-47843731 ( 94) CTGGAATGGTGATT 1 chr1:91413901-91414660 ( 671) CTGCCTGCCTGGGC 1 chrX:167091787-167092426 ( 194) CTGCCTTGCTCTGC 1 chr1:134092570-134093219 ( 483) CTGGCTGGGACAGG 1 chr15:85698553-85699119 ( 516) CTGGTAGTGTCACT 1 chr3:88138602-88139038 ( 164) CTGTAAGGTTGTGT 1 chr1:135534977-135536185 ( 576) CAGCAATTCTCAGC 1 chr1:134079056-134080037 ( 964) AAGCTAGGCAGACT 1 chr1:135843983-135845220 ( 688) ATGGCATCCTGTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 24699 bayes= 10.4536 E= 6.1e+000 -145 176 -1123 -1123 13 -1123 -1123 168 -1123 -1123 191 -1123 -1123 62 102 -248 113 11 -1123 -17 135 -1123 -1123 83 -1123 -1123 149 10 -145 -12 102 -90 -1123 162 -109 -248 54 -1123 -1123 151 -245 11 132 -1123 135 -1123 -109 32 -1123 11 123 -149 -1123 -70 -36 142 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 24 E= 6.1e+000 0.083333 0.916667 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.416667 0.541667 0.041667 0.500000 0.291667 0.000000 0.208333 0.583333 0.000000 0.000000 0.416667 0.000000 0.000000 0.750000 0.250000 0.083333 0.250000 0.541667 0.125000 0.000000 0.833333 0.125000 0.041667 0.333333 0.000000 0.000000 0.666667 0.041667 0.291667 0.666667 0.000000 0.583333 0.000000 0.125000 0.291667 0.000000 0.291667 0.625000 0.083333 0.000000 0.166667 0.208333 0.625000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- C[TA]G[GC][ACT][AT][GT][GC]C[TA][GC][AT][GC][TG] -------------------------------------------------------------------------------- Time 171.12 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 25 sites = 4 llr = 98 E-value = 2.9e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A a:a38a:583aa3383a53883a83 pos.-specific C :a:8:::::5:::::::::3:::3: probability G :::::::33::::53::3::35::: matrix T ::::3:a3:3::83:8:38::3::8 bits 2.1 * * ** ** * * 1.9 *** ** ** * * 1.7 *** ** ** * * 1.5 *** ** ** * * Relative 1.3 *** *** * *** *** *** *** Entropy 1.1 ******* * *** *** *** *** (35.5 bits) 0.9 ******* * *** *** *** *** 0.6 ********* *** ******* *** 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel ACACAATAACAATGATAATAAGAAT consensus AT GGA AAGA GACGA CA sequence T T T T T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr16:47842998-47843731 567 1.05e-12 GGAGAGGGAA ACAATATAATAATAATAATAATAAT AATAATAATA chr1:135861587-135863192 535 2.12e-12 TTCTTCCTCC ACACAATGGCAATGATAGTAGGAAT GACCTCACCA chr6:72259181-72260517 218 3.33e-12 CCGAACACAA ACACAATTAAAAATAAAATAAAAAT ATTTATTAAG chrX:167091787-167092426 99 2.36e-11 ATAATGTCTT ACACAATAACAATGGTATACAGACA TAAGGAAAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:47842998-47843731 1e-12 566_[+9]_142 chr1:135861587-135863192 2.1e-12 534_[+9]_1046 chr6:72259181-72260517 3.3e-12 217_[+9]_1094 chrX:167091787-167092426 2.4e-11 98_[+9]_516 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=25 seqs=4 chr16:47842998-47843731 ( 567) ACAATATAATAATAATAATAATAAT 1 chr1:135861587-135863192 ( 535) ACACAATGGCAATGATAGTAGGAAT 1 chr6:72259181-72260517 ( 218) ACACAATTAAAAATAAAATAAAAAT 1 chrX:167091787-167092426 ( 99) ACACAATAACAATGGTATACAGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 24435 bayes= 12.5764 E= 2.9e+002 213 -865 -865 -865 -865 188 -865 -865 213 -865 -865 -865 13 147 -865 -865 171 -865 -865 10 213 -865 -865 -865 -865 -865 -865 209 113 -865 -9 10 171 -865 -9 -865 13 88 -865 10 213 -865 -865 -865 213 -865 -865 -865 13 -865 -865 168 13 -865 90 10 171 -865 -9 -865 13 -865 -865 168 213 -865 -865 -865 113 -865 -9 10 13 -865 -865 168 171 -12 -865 -865 171 -865 -9 -865 13 -865 90 10 213 -865 -865 -865 171 -12 -865 -865 13 -865 -865 168 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 4 E= 2.9e+002 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 0.750000 0.000000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.500000 0.000000 0.250000 0.250000 0.750000 0.000000 0.250000 0.000000 0.250000 0.500000 0.000000 0.250000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 0.250000 0.000000 0.500000 0.250000 0.750000 0.000000 0.250000 0.000000 0.250000 0.000000 0.000000 0.750000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.250000 0.250000 0.250000 0.000000 0.000000 0.750000 0.750000 0.250000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.250000 0.000000 0.500000 0.250000 1.000000 0.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.250000 0.000000 0.000000 0.750000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- ACA[CA][AT]AT[AGT][AG][CAT]AA[TA][GAT][AG][TA]A[AGT][TA][AC][AG][GAT]A[AC][TA] -------------------------------------------------------------------------------- Time 191.74 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 20 sites = 11 llr = 162 E-value = 4.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A :2554a127::559882318 pos.-specific C 13:14:::::::2:2:143: probability G 65:43:97:9a53::27:22 matrix T 3:5::::131:1:1:::45: bits 2.1 * 1.9 * * 1.7 * * * 1.5 ** ** *** * Relative 1.3 ** *** *** * Entropy 1.1 * ** *** *** * (21.3 bits) 0.9 * ****** **** * 0.6 * ** ************ * 0.4 ****************** * 0.2 ******************** 0.0 -------------------- Multilevel GGTAAAGGAGGAAAAAGCTA consensus TCAGC T GG TC sequence G A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- chr7:45460723-45461396 526 6.25e-10 TGGACAAGGC TGTAAAGGTGGAAAAAGATA AAACCCGGAA chr1:135861587-135863192 924 1.60e-09 TGGCCAACCA GCTACAGGAGGTAAAAGTTA GGCGTTGATG chr1:135668102-135668958 137 1.27e-08 CATCCCAACT GAAACAGAAGGAGAAAGTCA CCTGCTTTCC chr1:134244219-134245778 1031 2.70e-08 GACAGCTGGG GCTGAAGGAGGACAAAGATG GGCACCCTGC chr1:135770524-135771765 731 3.30e-08 GAAAGAATGG CGAGAAGGTGGGAAAAGCCA GAGAGTCCAG chr3:87982114-87984371 283 4.85e-08 CAGAGGCCAA GGTGCAGGAGGGGACAGTAA GATGGGGGAA chr6:72259181-72260517 294 6.39e-08 ATGGAAAAGA GGAAGAAAAGGAAAAAACTA AAAGGTTTGT chr1:75344260-75345310 654 2.89e-07 AGCATGGGAG GGTGGAGGAGGGCTAACTTA TCCGAGGCAA chr1:136228027-136229131 808 3.32e-07 TCAAGCAAAG TCTAGAGGATGAAAAGGAGA ATAAAAGGAA chr1:134195091-134196873 905 4.32e-07 AGGAGGCTAC GAACAAGGAGGGAACAGCCG GACCTCTCAT chr1:135843983-135845220 956 1.40e-06 ACCTCTGGGG TGAACAGTTGGGGAAGACGA TGGATTTCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:45460723-45461396 6.2e-10 525_[+10]_128 chr1:135861587-135863192 1.6e-09 923_[+10]_662 chr1:135668102-135668958 1.3e-08 136_[+10]_700 chr1:134244219-134245778 2.7e-08 1030_[+10]_509 chr1:135770524-135771765 3.3e-08 730_[+10]_491 chr3:87982114-87984371 4.9e-08 282_[+10]_1955 chr6:72259181-72260517 6.4e-08 293_[+10]_1023 chr1:75344260-75345310 2.9e-07 653_[+10]_377 chr1:136228027-136229131 3.3e-07 807_[+10]_277 chr1:134195091-134196873 4.3e-07 904_[+10]_858 chr1:135843983-135845220 1.4e-06 955_[+10]_262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=20 seqs=11 chr7:45460723-45461396 ( 526) TGTAAAGGTGGAAAAAGATA 1 chr1:135861587-135863192 ( 924) GCTACAGGAGGTAAAAGTTA 1 chr1:135668102-135668958 ( 137) GAAACAGAAGGAGAAAGTCA 1 chr1:134244219-134245778 ( 1031) GCTGAAGGAGGACAAAGATG 1 chr1:135770524-135771765 ( 731) CGAGAAGGTGGGAAAAGCCA 1 chr3:87982114-87984371 ( 283) GGTGCAGGAGGGGACAGTAA 1 chr6:72259181-72260517 ( 294) GGAAGAAAAGGAAAAAACTA 1 chr1:75344260-75345310 ( 654) GGTGGAGGAGGGCTAACTTA 1 chr1:136228027-136229131 ( 808) TCTAGAGGATGAAAAGGAGA 1 chr1:134195091-134196873 ( 905) GAACAAGGAGGGAACAGCCG 1 chr1:135843983-135845220 ( 956) TGAACAGTTGGGGAAGACGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 24555 bayes= 12.1505 E= 4.7e+002 -1010 -157 125 22 -33 1 103 -1010 99 -1010 -1010 122 125 -157 45 -1010 67 42 3 -1010 213 -1010 -1010 -1010 -133 -1010 177 -1010 -33 -1010 145 -136 167 -1010 -1010 22 -1010 -1010 177 -136 -1010 -1010 190 -1010 99 -1010 77 -136 125 -57 3 -1010 199 -1010 -1010 -136 184 -57 -1010 -1010 184 -1010 -55 -1010 -33 -157 145 -1010 25 42 -1010 64 -133 1 -55 96 184 -1010 -55 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 11 E= 4.7e+002 0.000000 0.090909 0.636364 0.272727 0.181818 0.272727 0.545455 0.000000 0.454545 0.000000 0.000000 0.545455 0.545455 0.090909 0.363636 0.000000 0.363636 0.363636 0.272727 0.000000 1.000000 0.000000 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.181818 0.000000 0.727273 0.090909 0.727273 0.000000 0.000000 0.272727 0.000000 0.000000 0.909091 0.090909 0.000000 0.000000 1.000000 0.000000 0.454545 0.000000 0.454545 0.090909 0.545455 0.181818 0.272727 0.000000 0.909091 0.000000 0.000000 0.090909 0.818182 0.181818 0.000000 0.000000 0.818182 0.000000 0.181818 0.000000 0.181818 0.090909 0.727273 0.000000 0.272727 0.363636 0.000000 0.363636 0.090909 0.272727 0.181818 0.454545 0.818182 0.000000 0.181818 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- [GT][GC][TA][AG][ACG]AGG[AT]GG[AG][AG]AAAG[CTA][TC]A -------------------------------------------------------------------------------- Time 211.95 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:45311444-45312243 1.71e-06 102_[+9(3.94e-05)]_20_[+8(2.41e-06)]_143_[+4(2.00e-05)]_52_[+2(1.48e-05)]_122_[+3(2.40e-05)]_77_[+3(9.85e-05)]_12_[+7(5.59e-05)]_160 chr15:34795064-34795760 6.49e-11 234_[+7(2.17e-05)]_83_[+1(4.00e-06)]_30_[+8(1.34e-06)]_55_[+3(1.13e-06)]_16_[+2(1.57e-06)]_56_[+5(6.51e-05)]_126 chr15:85698553-85699119 2.65e-06 17_[+5(2.30e-05)]_7_[+2(5.10e-06)]_149_[+3(5.81e-05)]_50_[+4(3.72e-05)]_117_[+7(6.53e-06)]_106_[+8(6.05e-05)]_37 chr16:47842998-47843731 3.56e-14 4_[+7(3.31e-05)]_20_[+1(6.02e-08)]_33_[+8(2.59e-05)]_103_[+4(7.51e-05)]_348_[+9(1.05e-12)]_99_[+2(4.81e-07)]_22 chr1:134092570-134093219 5.09e-09 56_[+7(3.17e-07)]_[+2(4.49e-05)]_99_[+5(2.57e-05)]_114_[+6(7.38e-09)]_141_[+8(5.64e-05)]_7_[+4(5.76e-05)]_138 chr1:135770524-135771765 4.63e-12 45_[+8(8.42e-05)]_320_[+7(6.42e-05)]_57_[+3(5.07e-05)]_34_[+4(5.76e-05)]_12_[+5(2.72e-05)]_48_[+1(9.33e-05)]_29_[+1(1.42e-09)]_81_[+10(3.30e-08)]_25_[+3(1.03e-05)]_62_[+4(2.00e-05)]_44_[+8(1.50e-05)]_272_[+2(1.11e-05)]_31 chr1:75344260-75345310 1.44e-17 13_[+6(2.90e-05)]_19_[+7(1.24e-06)]_98_[+1(1.92e-08)]_107_[+8(2.08e-06)]_24_[+10(7.13e-05)]_168_[+2(5.10e-06)]_108_[+10(2.89e-07)]_98_[+3(2.06e-07)]_227_[+6(2.01e-09)]_13 chr1:91413901-91414660 7.07e-20 13_[+2(7.54e-07)]_19_[+2(6.15e-05)]_59_[+2(2.50e-05)]_6_[+5(5.97e-05)]_20_[+2(2.32e-09)]_13_[+5(8.10e-05)]_23_[+4(5.76e-05)]_33_[+4(2.00e-05)]_13_[+3(5.43e-06)]_148_[+6(1.67e-15)]_68_[+4(5.76e-05)]_86_[+8(3.89e-05)]_52_[+1(2.58e-07)]_2 chr1:135668102-135668958 2.15e-12 136_[+10(1.27e-08)]_140_[+4(3.72e-05)]_4_[+7(3.50e-06)]_14_[+8(1.99e-05)]_50_[+3(5.81e-05)]_32_[+2(4.28e-07)]_1_[+5(4.85e-06)]_206_[+1(1.35e-06)]_149 chr1:134098990-134100352 5.98e-08 41_[+7(8.31e-05)]_25_[+3(2.25e-06)]_60_[+8(1.36e-05)]_245_[+7(3.31e-05)]_22_[+2(9.43e-05)]_116_[+1(2.58e-07)]_23_[+7(4.01e-06)]_203_[+1(5.08e-05)]_124_[+5(9.26e-05)]_21_[+2(1.57e-06)]_252_[+4(3.72e-05)]_54 chr1:134195091-134196873 3.77e-19 61_[+3(4.27e-07)]_255_[+5(2.96e-05)]_27_[+3(8.68e-05)]_248_[+5(1.92e-05)]_65_[+8(2.82e-05)]_10_[+8(5.23e-07)]_160_[+10(4.32e-07)]_14_[+1(4.35e-08)]_[+7(4.82e-07)]_208_[+2(9.37e-07)]_14_[+4(2.00e-05)]_143_[+6(1.89e-09)]_160_[+10(3.46e-05)]_209 chr1:135843983-135845220 6.78e-10 436_[+5(1.35e-05)]_28_[+3(2.05e-06)]_50_[+1(5.95e-07)]_2_[+5(8.60e-05)]_3_[+6(5.99e-05)]_6_[+7(1.12e-05)]_65_[+8(8.42e-05)]_254_[+10(1.40e-06)]_69_[+2(1.73e-06)]_172 chr1:134244219-134245778 8.41e-16 106_[+3(9.25e-07)]_374_[+8(3.89e-05)]_143_[+8(2.08e-06)]_31_[+6(1.43e-08)]_215_[+4(2.00e-05)]_76_[+4(3.72e-05)]_2_[+10(2.70e-08)]_131_[+5(3.17e-07)]_4_[+2(1.58e-07)]_21_[+7(1.66e-05)]_237_[+5(2.30e-05)]_58 chr1:134079056-134080037 8.00e-16 6_[+1(6.82e-05)]_146_[+5(2.24e-06)]_113_[+1(1.16e-08)]_332_[+3(5.81e-05)]_65_[+6(1.67e-15)]_1_[+6(1.67e-15)]_50_[+2(3.62e-06)]_112_[+8(6.94e-05)]_4 chr1:135534977-135536185 2.33e-10 165_[+2(2.53e-06)]_63_[+3(3.28e-05)]_142_[+1(5.08e-05)]_95_[+5(1.02e-05)]_43_[+8(6.94e-05)]_291_[+6(1.04e-08)]_2_[+6(6.69e-06)]_27_[+7(1.66e-05)]_36_[+5(5.97e-05)]_89_[+1(1.80e-07)]_77 chr1:135861587-135863192 3.60e-19 130_[+3(7.10e-06)]_48_[+8(2.41e-06)]_67_[+1(5.43e-05)]_72_[+1(3.65e-07)]_63_[+8(5.25e-05)]_70_[+9(2.12e-12)]_2_[+7(1.51e-05)]_106_[+5(2.57e-05)]_26_[+2(6.47e-05)]_67_[+2(8.23e-05)]_28_[+1(2.89e-05)]_46_[+10(1.60e-09)]_341_[+2(2.99e-07)]_14_[+7(8.84e-05)]_271 chr1:136228027-136229131 1.08e-11 5_[+1(3.23e-05)]_14_[+7(5.16e-06)]_251_[+7(6.00e-05)]_81_[+4(2.00e-05)]_16_[+1(1.23e-07)]_12_[+3(8.76e-06)]_127_[+8(4.58e-06)]_193_[+10(3.32e-07)]_54_[+2(6.01e-06)]_59_[+4(2.00e-05)]_77_[+4(2.00e-05)]_50 chr1:92787053-92787745 5.13e-10 7_[+6(2.18e-05)]_34_[+5(1.21e-05)]_60_[+8(1.12e-05)]_33_[+1(1.09e-06)]_83_[+8(2.77e-06)]_51_[+4(2.00e-05)]_23_[+7(4.55e-06)]_216_[+3(1.88e-05)]_63 chr3:88138602-88139038 2.47e-13 2_[+3(2.49e-07)]_106_[+1(3.89e-08)]_20_[+8(6.49e-05)]_7_[+2(4.32e-08)]_114_[+5(1.28e-06)]_4_[+7(5.21e-05)]_87 chr3:87982114-87984371 6.48e-14 192_[+2(2.33e-07)]_69_[+10(4.85e-08)]_24_[+4(2.00e-05)]_74_[+3(3.24e-06)]_4_[+1(7.26e-05)]_109_[+10(2.18e-05)]_127_[+1(5.26e-05)]_313_[+2(1.48e-05)]_165_[+10(1.90e-05)]_133_[+8(1.36e-05)]_161_[+1(1.02e-08)]_64_[+3(3.43e-07)]_200_[+5(1.35e-05)]_69_[+5(9.26e-05)]_8_[+7(3.17e-07)]_293 chr6:72259181-72260517 2.37e-27 154_[+5(3.17e-07)]_52_[+9(3.33e-12)]_33_[+10(2.89e-07)]_1_[+9(4.25e-05)]_136_[+3(8.76e-06)]_165_[+2(1.28e-06)]_182_[+3(4.39e-05)]_105_[+7(2.59e-05)]_70_[+6(1.67e-15)]_24_[+6(2.58e-05)]_92_[+8(1.81e-05)]_113 chr7:45460723-45461396 1.58e-14 87_[+7(9.40e-05)]_12_[+3(1.44e-06)]_28_[+10(5.57e-06)]_97_[+8(2.59e-05)]_82_[+4(2.00e-05)]_83_[+2(4.02e-05)]_9_[+5(3.85e-05)]_24_[+10(6.25e-10)]_16_[+1(2.16e-07)]_79_[+5(9.14e-06)]_1 chr8:123884590-123885381 6.04e-11 15_[+1(5.93e-06)]_41_[+7(8.74e-07)]_196_[+2(4.74e-05)]_7_[+8(5.23e-07)]_28_[+3(5.07e-05)]_43_[+4(3.72e-05)]_9_[+2(5.05e-08)]_12_[+2(2.64e-07)]_16_[+7(6.00e-05)]_5_[+2(6.01e-06)]_14_[+2(6.15e-05)]_213 chrX:167091787-167092426 2.87e-12 98_[+9(2.36e-11)]_48_[+3(2.05e-06)]_8_[+8(4.53e-05)]_70_[+2(1.16e-06)]_66_[+9(2.09e-05)]_22_[+7(6.42e-05)]_36_[+5(6.51e-05)]_154_[+5(4.85e-06)]_1 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************