cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA1-Rep1-ENCFF001MOE.mm10.36mers.unique.pseudoRep1.bam -i=G1E-Control-Rep1-ENCFF001MOR.mm10.36mers.unique.pseudoRep1.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM-ss-Rep1PseudoRep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA1-Rep1-ENCFF001MOE.mm10.36mers.unique.pseudoRep2.bam -i=G1E-Control-Rep1-ENCFF001MOR.mm10.36mers.unique.pseudoRep2.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM-ss-Rep1PseudoRep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA1-Rep2-ENCFF001MOM.mm10.36mers.unique.pseudoRep1.bam -i=G1E-Control-Rep2-ENCFF001MPG.mm10.36mers.unique.30M.pseudoRep1.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM-ss-Rep2PseudoRep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA1-Rep2-ENCFF001MOM.mm10.36mers.unique.pseudoRep2.bam -i=G1E-Control-Rep2-ENCFF001MPG.mm10.36mers.unique.30M.pseudoRep2.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM-ss-Rep2PseudoRep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA1-Control-Rep1-ENCFF001MRX.mm10.36mers.unique.pseudoRep1.bam -i=G1E-ER4-24h-Control-Rep1-ENCFF001MSM.mm10.36mers.unique.pseudoRep1.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL-ss-Rep1PseudoRep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA1-Control-Rep1-ENCFF001MRX.mm10.36mers.unique.pseudoRep2.bam -i=G1E-ER4-24h-Control-Rep1-ENCFF001MSM.mm10.36mers.unique.pseudoRep2.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL-ss-Rep1PseudoRep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA1-Control-Rep2-ENCFF001MSL.mm10.36mers.unique.pseudoRep1.bam -i=G1E-ER4-24h-Control-Rep2-ENCFF001MSW.mm10.36mers.unique.30M.pseudoRep1.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL-ss-Rep2PseudoRep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA1-Control-Rep2-ENCFF001MSL.mm10.36mers.unique.pseudoRep2.bam -i=G1E-ER4-24h-Control-Rep2-ENCFF001MSW.mm10.36mers.unique.30M.pseudoRep2.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL-ss-Rep2PseudoRep2