cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA1-Rep2-ENCFF001MOM.mm10.36mers.unique.bam -i=G1E-Control-Rep2-ENCFF001MPG.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM-Rep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA1-Control-Rep2-ENCFF001MSL.mm10.36mers.unique.bam -i=G1E-ER4-24h-Control-Rep2-ENCFF001MSW.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL-Rep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM.ChIP.pooled.sorted.bam -i=G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM.Control.pooled.sorted.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM-Pooled
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL.ChIP.pooled.sorted.bam -i=G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL.Control.pooled.sorted.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL-Pooled