cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA1-Rep1-ENCFF001MOE.mm10.36mers.unique.bam -i=G1E-Control-Rep1-ENCFF001MOR.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM-Rep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA1-Rep2-ENCFF001MOM.mm10.36mers.unique.bam -i=G1E-Control-Rep2-ENCFF001MPG.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA1-ENCFF001MOE-vs-ENCFF001MOM-Rep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA2-Rep1-ENCFF001MOI.mm10.36mers.unique.bam -i=G1E-Control-Rep1-ENCFF001MOR.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA2-ENCFF001MOI-vs-ENCFF001MOM-Rep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-GATA2-Rep2-ENCFF001MOM.mm10.36mers.unique.bam -i=G1E-Control-Rep2-ENCFF001MPG.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-GATA2-ENCFF001MOI-vs-ENCFF001MOM-Rep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-TAL1-Rep1-ENCFF001MPN.mm10.36mers.unique.bam -i=G1E-Control-Rep1-ENCFF001MOR.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-TAL1-ENCFF001MPN-vs-ENCFF001MPP-Rep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-TAL1-Rep2-ENCFF001MPP.mm10.36mers.unique.bam -i=G1E-Control-Rep2-ENCFF001MPG.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-TAL1-ENCFF001MPN-vs-ENCFF001MPP-Rep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-TAL1-Rep1-ENCFF001MTO.mm10.36mers.unique.bam -i=G1E-ER4-24h-Control-Rep1-ENCFF001MSM.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-TAL1-ENCFF001MTO-vs-ENCFF001MTM-Rep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-TAL1-Rep2-ENCFF001MTM.mm10.36mers.unique.bam -i=G1E-ER4-24h-Control-Rep2-ENCFF001MSW.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-TAL1-ENCFF001MTO-vs-ENCFF001MTM-Rep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA2-Rep1-ENCFF001MSD.mm10.36mers.unique.bam -i=G1E-ER4-24h-Control-Rep1-ENCFF001MSM.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA2-ENCFF001MSD-vs-ENCFF001MSI-Rep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA2-Rep2-ENCFF001MSI.mm10.36mers.unique.bam -i=G1E-ER4-24h-Control-Rep2-ENCFF001MSW.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA2-ENCFF001MSD-vs-ENCFF001MSI-Rep2
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA1-Control-Rep1-ENCFF001MRX.mm10.36mers.unique.bam -i=G1E-ER4-24h-Control-Rep1-ENCFF001MSM.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL-Rep1
cd /N/dc2/projects/marinovg/papers/2017-ENCODE-enhancers/2016-09-30-mm10-hg20-migration-G1E; Rscript /N/dc2/projects/marinovg/code/spp/spp_package/run_spp.R -c=G1E-ER4-24h-GATA1-Control-Rep2-ENCFF001MSL.mm10.36mers.unique.bam -i=G1E-ER4-24h-Control-Rep2-ENCFF001MSW.mm10.36mers.unique.bam -p=16 -npeak=300000 -savr -savp -rf -odir=SPP-300K-G1E-ER4-24h-GATA1-Control-ENCFF001MRX-vs-ENCFF001MSL-Rep2