is.broadpeak FALSE 
read G1E-H3K27ac-534.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000 peaks are left after cleaning
 G1E-H3K27ac-535.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-G1E-H3K27ac-534-vs-535-uri.sav 
EM is done

EM is saved at: IDR-G1E-H3K27ac-534-vs-535-em.sav 
EM estimation for the following files
G1E-H3K27ac-534.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
G1E-H3K27ac-535.mm10.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
$p
[1] 0.5983821

$rho1
[1] 0.9067662

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-G1E-H3K27ac-534-vs-535-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 16261.88

$x.mean2
[1] 36598.49

$y.mean1
[1] 16153.83

$y.mean2
[1] 36759.34

$x.sd1
[1] 11128.43

$x.sd2
[1] 7958.194

$y.sd1
[1] 11059.73

$y.sd2
[1] 7682.235