is.broadpeak FALSE 
read A549-EtOH-GR-Rep1-GSM2095220.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000 peaks are left after cleaning
 A549-EtOH-GR-Rep2-GSM2095221.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-A549-EtOH-GR-Rep1-GSM2095220-vs-Rep2-GSM2095221-uri.sav 
EM is done

EM is saved at: IDR-A549-EtOH-GR-Rep1-GSM2095220-vs-Rep2-GSM2095221-em.sav 
EM estimation for the following files
A549-EtOH-GR-Rep1-GSM2095220.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
A549-EtOH-GR-Rep2-GSM2095221.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
$p
[1] 0.666435

$rho1
[1] 0.914031

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-A549-EtOH-GR-Rep1-GSM2095220-vs-Rep2-GSM2095221-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 10218.87

$x.mean2
[1] 19556.89

$y.mean1
[1] 10139.81

$y.mean2
[1] 19714.41

$x.sd1
[1] 6879.719

$x.sd2
[1] 5008.117

$y.sd1
[1] 6810.3

$y.sd2
[1] 4898.533