is.broadpeak FALSE 
read A549-EtOH-1h-H3K27ac-ENCFF000AKR.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  100000 peaks
 100000 peaks are left after cleaning
 A549-EtOH-1h-H3K27ac-ENCFF000AKS.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort :  66391 peaks
 66391  peaks are left after cleaninghalf.width= reported 
significant measure= p.value 
URI is done
URI is saved at: IDR-A549-EtOH-1h-H3K27ac-ENCFF000AKR-vs-ENCFF000AKS-uri.sav 
EM is done

EM is saved at: IDR-A549-EtOH-1h-H3K27ac-ENCFF000AKR-vs-ENCFF000AKS-em.sav 
EM estimation for the following files
A549-EtOH-1h-H3K27ac-ENCFF000AKR.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
A549-EtOH-1h-H3K27ac-ENCFF000AKS.hg20-male.36mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.top100K-p-value-sort
$p
[1] 0.746737

$rho1
[1] 0.7592444

$rho2
[1] 0

Write overlapped peaks and local idr to: IDR-A549-EtOH-1h-H3K27ac-ENCFF000AKR-vs-ENCFF000AKS-overlapped-peaks.txt
Write number of peaks above IDR cutoff [0.01, 0.25]: npeaks-aboveIDR.txt
Marginal mean of two components:
$x.mean1
[1] 18557.14

$x.mean2
[1] 35240.82

$y.mean1
[1] 18901.43

$y.mean2
[1] 34228.59

$x.sd1
[1] 11850.6

$x.sd2
[1] 7834.777

$y.sd1
[1] 12204.81

$y.sd2
[1] 8290.627