<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence+, letter_frequencies)>
<!ATTLIST training_set datafile CDATA #REQUIRED length CDATA #REQUIRED>
<!ELEMENT alphabet (letter+)>
<!ATTLIST alphabet id (amino-acid|nucleotide) #REQUIRED
                   length CDATA #REQUIRED>
<!ELEMENT ambigs (letter+)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  min_width,
  max_width,
  minic,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  prob,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_sequences,
  num_positions,
  seed,
  seqfrac,
  strands,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT minic (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT prob (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_sequences (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT seqfrac (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif+)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                llr CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                e_value CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site+)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref+)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites+)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value+)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array+)>

]>
<!-- Begin document body -->
<MEME version="4.6.1" release="Mon Mar 21 15:08:38 EST 2011">
<training_set datafile="GATA_No_Function.radius25bp.fa" length="36">
<alphabet id="nucleotide" length="4">
<letter id="letter_A" symbol="A"/>
<letter id="letter_C" symbol="C"/>
<letter id="letter_G" symbol="G"/>
<letter id="letter_T" symbol="T"/>
</alphabet>
<ambigs>
<letter id="letter_B" symbol="B"/>
<letter id="letter_D" symbol="D"/>
<letter id="letter_H" symbol="H"/>
<letter id="letter_K" symbol="K"/>
<letter id="letter_M" symbol="M"/>
<letter id="letter_N" symbol="N"/>
<letter id="letter_R" symbol="R"/>
<letter id="letter_S" symbol="S"/>
<letter id="letter_U" symbol="U"/>
<letter id="letter_V" symbol="V"/>
<letter id="letter_W" symbol="W"/>
<letter id="letter_Y" symbol="Y"/>
<letter id="letter_star" symbol="*"/>
<letter id="letter_-" symbol="-"/>
<letter id="letter_X" symbol="X"/>
</ambigs>
<sequence id="sequence_0" name="chr11:78066078-78066128" length="50" weight="1.000000" />
<sequence id="sequence_1" name="chr11:121433515-121433565" length="50" weight="1.000000" />
<sequence id="sequence_2" name="chr11:96918280-96918330" length="50" weight="1.000000" />
<sequence id="sequence_3" name="chr11:96941206-96941256" length="50" weight="1.000000" />
<sequence id="sequence_4" name="chr16:17638395-17638445" length="50" weight="1.000000" />
<sequence id="sequence_5" name="chr17:4626384-4626434" length="50" weight="1.000000" />
<sequence id="sequence_6" name="chr18:78123212-78123262" length="50" weight="1.000000" />
<sequence id="sequence_7" name="chr1:133825637-133825687" length="50" weight="1.000000" />
<sequence id="sequence_8" name="chr1:155039378-155039428" length="50" weight="1.000000" />
<sequence id="sequence_9" name="chr2:35336422-35336472" length="50" weight="1.000000" />
<sequence id="sequence_10" name="chr2:27393912-27393962" length="50" weight="1.000000" />
<sequence id="sequence_11" name="chr3:21996079-21996129" length="50" weight="1.000000" />
<sequence id="sequence_12" name="chr5:147442107-147442157" length="50" weight="1.000000" />
<sequence id="sequence_13" name="chr6:38850175-38850225" length="50" weight="1.000000" />
<sequence id="sequence_14" name="chr6:88190792-88190842" length="50" weight="1.000000" />
<sequence id="sequence_15" name="chr6:38874545-38874595" length="50" weight="1.000000" />
<sequence id="sequence_16" name="chr7:81371653-81371703" length="50" weight="1.000000" />
<sequence id="sequence_17" name="chr7:126348348-126348398" length="50" weight="1.000000" />
<sequence id="sequence_18" name="chr7:66079564-66079614" length="50" weight="1.000000" />
<sequence id="sequence_19" name="chr7:81828601-81828651" length="50" weight="1.000000" />
<sequence id="sequence_20" name="chr7:83695979-83696029" length="50" weight="1.000000" />
<sequence id="sequence_21" name="chr7:80629549-80629599" length="50" weight="1.000000" />
<sequence id="sequence_22" name="chr7:100684841-100684891" length="50" weight="1.000000" />
<sequence id="sequence_23" name="chr7:83898483-83898533" length="50" weight="1.000000" />
<sequence id="sequence_24" name="chr7:103910226-103910276" length="50" weight="1.000000" />
<sequence id="sequence_25" name="chr7:65300616-65300666" length="50" weight="1.000000" />
<sequence id="sequence_26" name="chr7:128672443-128672493" length="50" weight="1.000000" />
<sequence id="sequence_27" name="chr7:126396996-126397046" length="50" weight="1.000000" />
<sequence id="sequence_28" name="chr7:90129415-90129465" length="50" weight="1.000000" />
<sequence id="sequence_29" name="chr7:126126718-126126768" length="50" weight="1.000000" />
<sequence id="sequence_30" name="chr7:103827971-103828021" length="50" weight="1.000000" />
<sequence id="sequence_31" name="chr8:122306953-122307003" length="50" weight="1.000000" />
<sequence id="sequence_32" name="chr8:122329138-122329188" length="50" weight="1.000000" />
<sequence id="sequence_33" name="chr8:122309363-122309413" length="50" weight="1.000000" />
<sequence id="sequence_34" name="chr9:110668775-110668825" length="50" weight="1.000000" />
<sequence id="sequence_35" name="chr9:96241584-96241634" length="50" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="letter_A">0.246</value>
<value letter_id="letter_C">0.264</value>
<value letter_id="letter_G">0.237</value>
<value letter_id="letter_T">0.254</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme GATA_No_Function.radius25bp.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o GATA_No_Function.radius25bp.meme.maxw25 </command_line>
<host>pongo</host>
<type>zoops</type>
<nmotifs>10</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>E-value of product of p-values</object_function>
<min_width>8</min_width>
<max_width>25</max_width>
<minic>    0.00</minic>
<wg>11</wg>
<ws>1</ws>
<endgaps>yes</endgaps>
<minsites>2</minsites>
<maxsites>36</maxsites>
<wnsites>0.8</wnsites>
<prob>1</prob>
<spmap>uni</spmap>
<spfuzz>0.5</spfuzz>
<prior>dirichlet</prior>
<beta>0.01</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_sequences>36</num_sequences>
<num_positions>1800</num_positions>
<seed>0</seed>
<seqfrac>       1</seqfrac>
<strands>forward</strands>
<priors_file></priors_file>
<reason_for_stopping>Stopped because nmotifs = 10 reached.</reason_for_stopping>
<background_frequencies source="dataset with add-one prior applied">
<alphabet_array>
<value letter_id="letter_A">0.246</value>
<value letter_id="letter_C">0.264</value>
<value letter_id="letter_G">0.237</value>
<value letter_id="letter_T">0.254</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="1" width="14" sites="10" ic="14.4" re="14.7" llr="102" e_value="3.2e+000" bayes_threshold="7.99522" elapsed_time="0.808000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-30</value>
<value letter_id="letter_C">-997</value>
<value letter_id="letter_G">176</value>
<value letter_id="letter_T">-997</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-997</value>
<value letter_id="letter_C">-997</value>
<value letter_id="letter_G">208</value>
<value letter_id="letter_T">-997</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-997</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">108</value>
<value letter_id="letter_T">-997</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-30</value>
<value letter_id="letter_C">-40</value>
<value letter_id="letter_G">134</value>
<value letter_id="letter_T">-997</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">29</value>
<value letter_id="letter_C">60</value>
<value letter_id="letter_G">-124</value>
<value letter_id="letter_T">-34</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">103</value>
<value letter_id="letter_C">-997</value>
<value letter_id="letter_G">-997</value>
<value letter_id="letter_T">98</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-997</value>
<value letter_id="letter_C">-140</value>
<value letter_id="letter_G">193</value>
<value letter_id="letter_T">-997</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">129</value>
<value letter_id="letter_C">-997</value>
<value letter_id="letter_G">-124</value>
<value letter_id="letter_T">24</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-129</value>
<value letter_id="letter_C">19</value>
<value letter_id="letter_G">34</value>
<value letter_id="letter_T">24</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">29</value>
<value letter_id="letter_C">-40</value>
<value letter_id="letter_G">-24</value>
<value letter_id="letter_T">24</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-997</value>
<value letter_id="letter_G">-997</value>
<value letter_id="letter_T">-997</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-997</value>
<value letter_id="letter_C">-997</value>
<value letter_id="letter_G">176</value>
<value letter_id="letter_T">-34</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">151</value>
<value letter_id="letter_C">19</value>
<value letter_id="letter_G">-997</value>
<value letter_id="letter_T">-997</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">187</value>
<value letter_id="letter_C">-140</value>
<value letter_id="letter_G">-997</value>
<value letter_id="letter_T">-997</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.200000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.800000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.200000</value>
<value letter_id="letter_C">0.200000</value>
<value letter_id="letter_G">0.600000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.300000</value>
<value letter_id="letter_C">0.400000</value>
<value letter_id="letter_G">0.100000</value>
<value letter_id="letter_T">0.200000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.100000</value>
<value letter_id="letter_G">0.900000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.600000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.100000</value>
<value letter_id="letter_T">0.300000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.100000</value>
<value letter_id="letter_C">0.300000</value>
<value letter_id="letter_G">0.300000</value>
<value letter_id="letter_T">0.300000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.300000</value>
<value letter_id="letter_C">0.200000</value>
<value letter_id="letter_G">0.200000</value>
<value letter_id="letter_T">0.300000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.800000</value>
<value letter_id="letter_T">0.200000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.700000</value>
<value letter_id="letter_C">0.300000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.900000</value>
<value letter_id="letter_C">0.100000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[GA]G[CG][GAC][CAT][AT]G[AT][CGT][ATCGC]A[GT][AC]A
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_9" position="6" strand="plus" pvalue="5.97e-07" >
<left_flank>GGCGCT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>ACAAGAATGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_35" position="34" strand="plus" pvalue="2.94e-06" >
<left_flank>TTGATAACTG</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>AT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="33" strand="plus" pvalue="5.04e-06" >
<left_flank>GCCTGCCAAT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="3" strand="plus" pvalue="6.82e-06" >
<left_flank>GAA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>ACACCATTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_26" position="20" strand="plus" pvalue="8.21e-06" >
<left_flank>TCTAGAGGCG</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>ACCTCCTGGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="24" strand="plus" pvalue="8.21e-06" >
<left_flank>GCTGACCTCA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>TGCAAGGAAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_29" position="29" strand="plus" pvalue="1.47e-05" >
<left_flank>TTACCAAGGA</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GTTCAGC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="16" strand="plus" pvalue="1.59e-05" >
<left_flank>CAAGGACCCT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>CTGACAGGCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_32" position="17" strand="plus" pvalue="1.99e-05" >
<left_flank>CTCTTTGTTG</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GGCTCAGATC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_22" position="29" strand="plus" pvalue="2.60e-05" >
<left_flank>TCAATGCTTT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>CAAGATA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_2" name="2" width="18" sites="6" ic="21.9" re="21.5" llr="89" e_value="1.5e+002" bayes_threshold="7.27906" elapsed_time="1.520000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">198</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-51</value>
<value letter_id="letter_T">171</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">49</value>
<value letter_id="letter_T">-61</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-56</value>
<value letter_id="letter_C">134</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-61</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">198</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">134</value>
<value letter_id="letter_G">-51</value>
<value letter_id="letter_T">-61</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">144</value>
<value letter_id="letter_C">-66</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-61</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-56</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">171</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">176</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-61</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-66</value>
<value letter_id="letter_G">49</value>
<value letter_id="letter_T">98</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">34</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">139</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">44</value>
<value letter_id="letter_C">-66</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">98</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">102</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">44</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">-51</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">176</value>
<value letter_id="letter_C">-66</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.166667</value>
<value letter_id="letter_T">0.833333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.333333</value>
<value letter_id="letter_T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.166667</value>
<value letter_id="letter_C">0.666667</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.666667</value>
<value letter_id="letter_G">0.166667</value>
<value letter_id="letter_T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.666667</value>
<value letter_id="letter_C">0.166667</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.166667</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.833333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.833333</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.166667</value>
<value letter_id="letter_G">0.333333</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.166667</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.166667</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.833333</value>
<value letter_id="letter_C">0.166667</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
TT[CG]CTCAATCA[TG][TC][TA]C[AC][CA]A
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_21" position="20" strand="plus" pvalue="1.16e-09" >
<left_flank>ATCCCGGCCA</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>ACACACTCTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_2" position="1" strand="plus" pvalue="5.69e-08" >
<left_flank>C</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>ACGCAACACA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_16" position="13" strand="plus" pvalue="9.51e-08" >
<left_flank>TAAAAGTGTT</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GACAGGCCTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_3" position="21" strand="plus" pvalue="1.11e-07" >
<left_flank>GGGCTCTTTG</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>CCTTAAGGGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_25" position="14" strand="plus" pvalue="1.30e-07" >
<left_flank>CATTCTCGGC</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>AATATGCTTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_11" position="25" strand="plus" pvalue="2.14e-07" >
<left_flank>AAGAAAACAT</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>TCTAGCC</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_3" name="3" width="14" sites="6" ic="17.1" re="17.4" llr="72" e_value="2.0e+002" bayes_threshold="7.44512" elapsed_time="2.120000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-66</value>
<value letter_id="letter_G">149</value>
<value letter_id="letter_T">-61</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">44</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">139</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">208</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-56</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">181</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-56</value>
<value letter_id="letter_C">34</value>
<value letter_id="letter_G">49</value>
<value letter_id="letter_T">-61</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">198</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">44</value>
<value letter_id="letter_C">-66</value>
<value letter_id="letter_G">108</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">176</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-51</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">208</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">44</value>
<value letter_id="letter_C">34</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">39</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-923</value>
<value letter_id="letter_C">-923</value>
<value letter_id="letter_G">-923</value>
<value letter_id="letter_T">198</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">144</value>
<value letter_id="letter_C">-66</value>
<value letter_id="letter_G">-51</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">144</value>
<value letter_id="letter_C">-66</value>
<value letter_id="letter_G">-51</value>
<value letter_id="letter_T">-923</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.166667</value>
<value letter_id="letter_G">0.666667</value>
<value letter_id="letter_T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.166667</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.833333</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.166667</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.333333</value>
<value letter_id="letter_T">0.166667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.166667</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.833333</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.166667</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.333333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.666667</value>
<value letter_id="letter_C">0.166667</value>
<value letter_id="letter_G">0.166667</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.666667</value>
<value letter_id="letter_C">0.166667</value>
<value letter_id="letter_G">0.166667</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
G[TA]GG[CG]T[GA]AAG[ACT]TAA
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_23" position="21" strand="plus" pvalue="2.72e-07" >
<left_flank>GCTGTGTTCA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>CTGTGTCGTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_13" position="7" strand="plus" pvalue="9.32e-07" >
<left_flank>CCCAGGA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>ACATTAGCAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_24" position="21" strand="plus" pvalue="1.07e-06" >
<left_flank>GTATATGACC</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GGGCTCAATC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_31" position="36" strand="plus" pvalue="1.72e-06" >
<left_flank>CGCTCGCTTG</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_28" position="19" strand="plus" pvalue="2.32e-06" >
<left_flank>GTCAGCCTTG</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>TCACTGTTGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="36" strand="plus" pvalue="2.81e-06" >
<left_flank>ATGAGCAGAG</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank></right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_4" name="4" width="11" sites="4" ic="17.3" re="17.6" llr="49" e_value="4.3e+002" bayes_threshold="8.48784" elapsed_time="2.680000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-865</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">208</value>
<value letter_id="letter_T">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">3</value>
<value letter_id="letter_C">-8</value>
<value letter_id="letter_G">-865</value>
<value letter_id="letter_T">98</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">161</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">8</value>
<value letter_id="letter_T">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-865</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">-865</value>
<value letter_id="letter_T">198</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-865</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">208</value>
<value letter_id="letter_T">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">-865</value>
<value letter_id="letter_T">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-865</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">208</value>
<value letter_id="letter_T">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-865</value>
<value letter_id="letter_C">150</value>
<value letter_id="letter_G">8</value>
<value letter_id="letter_T">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">161</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">-865</value>
<value letter_id="letter_T">-2</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-865</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">208</value>
<value letter_id="letter_T">-865</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">161</value>
<value letter_id="letter_C">-865</value>
<value letter_id="letter_G">-865</value>
<value letter_id="letter_T">-2</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.250000</value>
<value letter_id="letter_C">0.250000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.750000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.250000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.750000</value>
<value letter_id="letter_G">0.250000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.750000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.250000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.750000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.250000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
G[TAC][AG]TGAG[CG][AT]G[AT]
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_9" position="24" strand="plus" pvalue="3.87e-07" >
<left_flank>AAAGAAACAA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GGAGGCTGAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_30" position="18" strand="plus" pvalue="9.58e-07" >
<left_flank>TCTCTATCCT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>TTGGCCCTTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_23" position="0" strand="plus" pvalue="1.36e-06" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>GCTGTGTTCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="7" strand="plus" pvalue="5.51e-06" >
<left_flank>TCTGGCA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>CATGCCTGGC</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_5" name="5" width="20" sites="2" ic="33.0" re="33.4" llr="46" e_value="3.1e+003" bayes_threshold="9.12153" elapsed_time="3.236000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">102</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">197</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">108</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">108</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">102</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">102</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">102</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">197</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">108</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
GG[AT]ATG[CG]A[GT]CA[AC]A[AT][AT]TGG[GT]A
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_10" position="7" strand="plus" pvalue="1.98e-11" >
<left_flank>GTTTGCT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>CTCCTAGAGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_12" position="22" strand="plus" pvalue="8.19e-11" >
<left_flank>TCGCAGTTGA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>ATGTCATC</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_6" name="6" width="13" sites="2" ic="24.0" re="24.2" llr="34" e_value="2.4e+003" bayes_threshold="8.56605" elapsed_time="3.768000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">197</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">108</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
ACG[CT]TCAGGC[GT]GG
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_31" position="0" strand="plus" pvalue="1.27e-08" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TCCAACGCGG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_6" position="27" strand="plus" pvalue="5.38e-08" >
<left_flank>GATGCTACTT</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CTTCCTGGTG</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_7" name="7" width="13" sites="2" ic="22.0" re="22.4" llr="31" e_value="4.0e+003" bayes_threshold="9.41574" elapsed_time="4.256000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">108</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">102</value>
<value letter_id="letter_C">92</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
GAGG[CT]AG[CG][CT][AC]GAG
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_18" position="19" strand="plus" pvalue="4.12e-08" >
<left_flank>GTCGAGCGTC</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CCACGATAGG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="0" strand="plus" pvalue="1.68e-07" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>ATCTCAGAGC</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_8" name="8" width="9" sites="2" ic="17.0" re="17.3" llr="24" e_value="4.0e+003" bayes_threshold="9.56033" elapsed_time="4.716000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">108</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">197</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
G[GT]AGATAAA
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_21" position="2" strand="plus" pvalue="3.05e-06" >
<left_flank>AG</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>TCCCGGCCAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_10" position="35" strand="plus" pvalue="6.31e-06" >
<left_flank>GACTCCTAGA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>CAGGTG</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_9" name="9" width="11" sites="7" ic="14.4" re="14.5" llr="70" e_value="7.4e+002" bayes_threshold="8.90388" elapsed_time="5.176000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">22</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">159</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">22</value>
<value letter_id="letter_C">144</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">122</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">75</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">186</value>
<value letter_id="letter_T">-83</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">208</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">170</value>
<value letter_id="letter_G">-73</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-78</value>
<value letter_id="letter_C">11</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">117</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">27</value>
<value letter_id="letter_T">149</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">27</value>
<value letter_id="letter_T">149</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">186</value>
<value letter_id="letter_T">-83</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.285714</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.714286</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.285714</value>
<value letter_id="letter_C">0.714286</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.571429</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.428571</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.857143</value>
<value letter_id="letter_T">0.142857</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.857143</value>
<value letter_id="letter_G">0.142857</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.142857</value>
<value letter_id="letter_C">0.285714</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.571429</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.285714</value>
<value letter_id="letter_T">0.714286</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.285714</value>
<value letter_id="letter_T">0.714286</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.857143</value>
<value letter_id="letter_T">0.142857</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[GA][CA]C[AT]GGC[TC][TG][TG]G
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_1" position="32" strand="plus" pvalue="9.37e-07" >
<left_flank>GGCCAGCACT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CCCCTCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="21" strand="plus" pvalue="6.89e-06" >
<left_flank>GAGGTGACAT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TGCTTATCTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_33" position="34" strand="plus" pvalue="9.85e-06" >
<left_flank>ATCCTCCGGG</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CACTA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_29" position="8" strand="plus" pvalue="9.85e-06" >
<left_flank>ACAGGTTT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TTACCAAGGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_16" position="31" strand="plus" pvalue="1.07e-05" >
<left_flank>TCATCTCCAA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>GCACCAGG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="3" strand="plus" pvalue="2.46e-05" >
<left_flank>GCC</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>GCTGACCTCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_30" position="38" strand="plus" pvalue="3.18e-05" >
<left_flank>ATTGGCCCTT</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>G</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_10" name="10" width="9" sites="2" ic="17.0" re="17.2" llr="24" e_value="4.1e+003" bayes_threshold="9.56033" elapsed_time="5.612000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">202</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">192</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">102</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">97</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">207</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
GAGCAGC[AT]G
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_20" position="33" strand="plus" pvalue="6.65e-06" >
<left_flank>TTTTTCTATC</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>ATGGCGCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="35" strand="plus" pvalue="6.65e-06" >
<left_flank>ATCTCTTCCA</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TGAGCA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
<scanned_sites_summary p_thresh="0.0001">
<scanned_sites sequence_id="sequence_0" pvalue="1.01e-01" num_sites="1"><scanned_site motif_id="motif_10" strand="plus" position="35" pvalue="6.65e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_1" pvalue="1.22e-04" num_sites="2"><scanned_site motif_id="motif_1" strand="plus" position="16" pvalue="1.59e-05"/>
<scanned_site motif_id="motif_9" strand="plus" position="32" pvalue="9.37e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_2" pvalue="1.18e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="1" pvalue="5.69e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_3" pvalue="3.01e-03" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="21" pvalue="1.11e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_4" pvalue="1.01e-04" num_sites="2"><scanned_site motif_id="motif_4" strand="plus" position="7" pvalue="5.51e-06"/>
<scanned_site motif_id="motif_9" strand="plus" position="21" pvalue="6.89e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_5" pvalue="1.00e+00" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_6" pvalue="2.46e-03" num_sites="1"><scanned_site motif_id="motif_6" strand="plus" position="27" pvalue="5.38e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_7" pvalue="1.55e-03" num_sites="2"><scanned_site motif_id="motif_9" strand="plus" position="3" pvalue="2.46e-05"/>
<scanned_site motif_id="motif_1" strand="plus" position="24" pvalue="8.21e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_8" pvalue="2.43e-05" num_sites="2"><scanned_site motif_id="motif_7" strand="plus" position="0" pvalue="1.68e-07"/>
<scanned_site motif_id="motif_1" strand="plus" position="33" pvalue="5.04e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_9" pvalue="1.24e-11" num_sites="3"><scanned_site motif_id="motif_1" strand="plus" position="6" pvalue="5.97e-07"/>
<scanned_site motif_id="motif_4" strand="plus" position="24" pvalue="3.87e-07"/>
<scanned_site motif_id="motif_3" strand="plus" position="36" pvalue="2.81e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_10" pvalue="4.71e-09" num_sites="2"><scanned_site motif_id="motif_5" strand="plus" position="7" pvalue="1.98e-11"/>
<scanned_site motif_id="motif_8" strand="plus" position="35" pvalue="6.31e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_11" pvalue="2.19e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="25" pvalue="2.14e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_12" pvalue="1.46e-05" num_sites="1"><scanned_site motif_id="motif_5" strand="plus" position="22" pvalue="8.19e-11"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_13" pvalue="8.50e-04" num_sites="1"><scanned_site motif_id="motif_3" strand="plus" position="7" pvalue="9.32e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_14" pvalue="7.91e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="3" pvalue="6.82e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_15" pvalue="7.07e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_16" pvalue="7.54e-06" num_sites="2"><scanned_site motif_id="motif_2" strand="plus" position="13" pvalue="9.51e-08"/>
<scanned_site motif_id="motif_9" strand="plus" position="31" pvalue="1.07e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_17" pvalue="7.24e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_18" pvalue="1.04e-03" num_sites="1"><scanned_site motif_id="motif_7" strand="plus" position="19" pvalue="4.12e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_19" pvalue="9.52e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_20" pvalue="2.13e-03" num_sites="1"><scanned_site motif_id="motif_10" strand="plus" position="33" pvalue="6.65e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_21" pvalue="1.77e-05" num_sites="2"><scanned_site motif_id="motif_8" strand="plus" position="2" pvalue="3.05e-06"/>
<scanned_site motif_id="motif_2" strand="plus" position="20" pvalue="1.16e-09"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_22" pvalue="1.39e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="29" pvalue="2.60e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_23" pvalue="1.56e-07" num_sites="2"><scanned_site motif_id="motif_4" strand="plus" position="0" pvalue="1.36e-06"/>
<scanned_site motif_id="motif_3" strand="plus" position="21" pvalue="2.72e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_24" pvalue="7.41e-03" num_sites="1"><scanned_site motif_id="motif_3" strand="plus" position="21" pvalue="1.07e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_25" pvalue="3.50e-02" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="14" pvalue="1.30e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_26" pvalue="5.25e-04" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="20" pvalue="8.21e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_27" pvalue="6.23e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_28" pvalue="8.10e-03" num_sites="1"><scanned_site motif_id="motif_3" strand="plus" position="19" pvalue="2.32e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_29" pvalue="1.38e-03" num_sites="2"><scanned_site motif_id="motif_9" strand="plus" position="8" pvalue="9.85e-06"/>
<scanned_site motif_id="motif_1" strand="plus" position="29" pvalue="1.47e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_30" pvalue="2.48e-04" num_sites="2"><scanned_site motif_id="motif_4" strand="plus" position="18" pvalue="9.58e-07"/>
<scanned_site motif_id="motif_9" strand="plus" position="38" pvalue="3.18e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_31" pvalue="4.08e-06" num_sites="2"><scanned_site motif_id="motif_6" strand="plus" position="0" pvalue="1.27e-08"/>
<scanned_site motif_id="motif_3" strand="plus" position="36" pvalue="1.72e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_32" pvalue="4.21e-03" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="17" pvalue="1.99e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_33" pvalue="7.36e-02" num_sites="1"><scanned_site motif_id="motif_9" strand="plus" position="34" pvalue="9.85e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_34" pvalue="5.98e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_35" pvalue="4.20e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="34" pvalue="2.94e-06"/>
</scanned_sites>
</scanned_sites_summary>
</MEME>
