<?xml version='1.0' encoding='UTF-8' standalone='yes'?>
<!-- Document definition -->
<!DOCTYPE MEME[
<!ELEMENT MEME (
  training_set,
  model, 
  motifs, 
  scanned_sites_summary?
)>
<!ATTLIST MEME 
  version CDATA #REQUIRED
  release CDATA #REQUIRED
>
<!-- Training-set elements -->
<!ELEMENT training_set (alphabet, ambigs, sequence+, letter_frequencies)>
<!ATTLIST training_set datafile CDATA #REQUIRED length CDATA #REQUIRED>
<!ELEMENT alphabet (letter+)>
<!ATTLIST alphabet id (amino-acid|nucleotide) #REQUIRED
                   length CDATA #REQUIRED>
<!ELEMENT ambigs (letter+)>
<!ELEMENT letter EMPTY>
<!ATTLIST letter id ID #REQUIRED>
<!ATTLIST letter symbol CDATA #REQUIRED>
<!ELEMENT sequence EMPTY>
<!ATTLIST sequence id ID #REQUIRED
                   name CDATA #REQUIRED
                   length CDATA #REQUIRED
                   weight CDATA #REQUIRED
>
<!ELEMENT letter_frequencies (alphabet_array)>

<!-- Model elements -->
<!ELEMENT model (
  command_line,
  host,
  type,
  nmotifs,
  evalue_threshold,
  object_function,
  min_width,
  max_width,
  minic,
  wg,
  ws,
  endgaps,
  minsites,
  maxsites,
  wnsites,
  prob,
  spmap,
  spfuzz,
  prior,
  beta,
  maxiter,
  distance,
  num_sequences,
  num_positions,
  seed,
  seqfrac,
  strands,
  priors_file,
  reason_for_stopping,
  background_frequencies
)>
<!ELEMENT command_line (#PCDATA)*>
<!ELEMENT host (#PCDATA)*>
<!ELEMENT type (#PCDATA)*>
<!ELEMENT nmotifs (#PCDATA)*>
<!ELEMENT evalue_threshold (#PCDATA)*>
<!ELEMENT object_function (#PCDATA)*>
<!ELEMENT min_width (#PCDATA)*>
<!ELEMENT max_width (#PCDATA)*>
<!ELEMENT minic (#PCDATA)*>
<!ELEMENT wg (#PCDATA)*>
<!ELEMENT ws (#PCDATA)*>
<!ELEMENT endgaps (#PCDATA)*>
<!ELEMENT minsites (#PCDATA)*>
<!ELEMENT maxsites (#PCDATA)*>
<!ELEMENT wnsites (#PCDATA)*>
<!ELEMENT prob (#PCDATA)*>
<!ELEMENT spmap (#PCDATA)*>
<!ELEMENT spfuzz (#PCDATA)*>
<!ELEMENT prior (#PCDATA)*>
<!ELEMENT beta (#PCDATA)*>
<!ELEMENT maxiter (#PCDATA)*>
<!ELEMENT distance (#PCDATA)*>
<!ELEMENT num_sequences (#PCDATA)*>
<!ELEMENT num_positions (#PCDATA)*>
<!ELEMENT seed (#PCDATA)*>
<!ELEMENT seqfrac (#PCDATA)*>
<!ELEMENT strands (#PCDATA)*>
<!ELEMENT priors_file (#PCDATA)*>
<!ELEMENT reason_for_stopping (#PCDATA)*>
<!ELEMENT background_frequencies (alphabet_array)>
<!ATTLIST background_frequencies source CDATA #REQUIRED>

<!-- Motif elements -->
<!ELEMENT motifs (motif+)>
<!ELEMENT motif (scores, probabilities, regular_expression?, contributing_sites)>
<!ATTLIST motif id ID #REQUIRED
                name CDATA #REQUIRED
                width CDATA #REQUIRED
                sites CDATA #REQUIRED
                llr CDATA #REQUIRED
                ic CDATA #REQUIRED
                re CDATA #REQUIRED
                bayes_threshold CDATA #REQUIRED
                e_value CDATA #REQUIRED
                elapsed_time CDATA #REQUIRED
                url CDATA ""
>
<!ELEMENT scores (alphabet_matrix)>
<!ELEMENT probabilities (alphabet_matrix)>
<!ELEMENT regular_expression (#PCDATA)*>

<!-- Contributing site elements -->
<!-- Contributing sites are motif occurences found during the motif discovery phase -->
<!ELEMENT contributing_sites (contributing_site+)>
<!ELEMENT contributing_site (left_flank, site, right_flank)>
<!ATTLIST contributing_site sequence_id IDREF #REQUIRED
                          position CDATA #REQUIRED
                          strand (plus|minus|none) 'none'
                          pvalue CDATA #REQUIRED
>
<!-- The left_flank contains the sequence for 10 bases to the left of the motif start -->
<!ELEMENT left_flank (#PCDATA)>
<!-- The site contains the sequence for the motif instance -->
<!ELEMENT site (letter_ref+)>
<!-- The right_flank contains the sequence for 10 bases to the right of the motif end -->
<!ELEMENT right_flank (#PCDATA)>

<!-- Scanned site elements -->
<!-- Scanned sites are motif occurences found during the sequence scan phase -->
<!ELEMENT scanned_sites_summary (scanned_sites+)>
<!ATTLIST scanned_sites_summary p_thresh CDATA #REQUIRED>
<!ELEMENT scanned_sites (scanned_site*)>
<!ATTLIST scanned_sites sequence_id IDREF #REQUIRED
                        pvalue CDATA #REQUIRED
                        num_sites CDATA #REQUIRED>
<!ELEMENT scanned_site EMPTY>
<!ATTLIST scanned_site  motif_id IDREF #REQUIRED
                        strand (plus|minus|none) 'none'
                        position CDATA #REQUIRED
                        pvalue CDATA #REQUIRED>

<!-- Utility elements -->
<!-- A reference to a letter in the alphabet -->
<!ELEMENT letter_ref EMPTY>
<!ATTLIST letter_ref letter_id IDREF #REQUIRED>
<!-- A alphabet-array contains one floating point value for each letter in an alphabet -->
<!ELEMENT alphabet_array (value+)>
<!ELEMENT value (#PCDATA)>
<!ATTLIST value letter_id IDREF #REQUIRED>

<!-- A alphabet_matrix contains one alphabet_array for each position in a motif -->
<!ELEMENT alphabet_matrix (alphabet_array+)>

]>
<!-- Begin document body -->
<MEME version="4.6.1" release="Mon Mar 21 15:08:38 EST 2011">
<training_set datafile="GATAWeakEnh.radius25bp.fa" length="34">
<alphabet id="nucleotide" length="4">
<letter id="letter_A" symbol="A"/>
<letter id="letter_C" symbol="C"/>
<letter id="letter_G" symbol="G"/>
<letter id="letter_T" symbol="T"/>
</alphabet>
<ambigs>
<letter id="letter_B" symbol="B"/>
<letter id="letter_D" symbol="D"/>
<letter id="letter_H" symbol="H"/>
<letter id="letter_K" symbol="K"/>
<letter id="letter_M" symbol="M"/>
<letter id="letter_N" symbol="N"/>
<letter id="letter_R" symbol="R"/>
<letter id="letter_S" symbol="S"/>
<letter id="letter_U" symbol="U"/>
<letter id="letter_V" symbol="V"/>
<letter id="letter_W" symbol="W"/>
<letter id="letter_Y" symbol="Y"/>
<letter id="letter_star" symbol="*"/>
<letter id="letter_-" symbol="-"/>
<letter id="letter_X" symbol="X"/>
</ambigs>
<sequence id="sequence_0" name="chr10:117106397-117106447" length="50" weight="1.000000" />
<sequence id="sequence_1" name="chr11:78069770-78069820" length="50" weight="1.000000" />
<sequence id="sequence_2" name="chr11:78069842-78069892" length="50" weight="1.000000" />
<sequence id="sequence_3" name="chr12:86801037-86801087" length="50" weight="1.000000" />
<sequence id="sequence_4" name="chr1:86479354-86479404" length="50" weight="1.000000" />
<sequence id="sequence_5" name="chr1:151953825-151953875" length="50" weight="1.000000" />
<sequence id="sequence_6" name="chr2:27389724-27389774" length="50" weight="1.000000" />
<sequence id="sequence_7" name="chr2:168050459-168050509" length="50" weight="1.000000" />
<sequence id="sequence_8" name="chr2:27344060-27344110" length="50" weight="1.000000" />
<sequence id="sequence_9" name="chr4:107008367-107008417" length="50" weight="1.000000" />
<sequence id="sequence_10" name="chr4:155788432-155788482" length="50" weight="1.000000" />
<sequence id="sequence_11" name="chr5:84811694-84811744" length="50" weight="1.000000" />
<sequence id="sequence_12" name="chr6:72279697-72279747" length="50" weight="1.000000" />
<sequence id="sequence_13" name="chr6:88189797-88189847" length="50" weight="1.000000" />
<sequence id="sequence_14" name="chr7:125472347-125472397" length="50" weight="1.000000" />
<sequence id="sequence_15" name="chr7:103865868-103865918" length="50" weight="1.000000" />
<sequence id="sequence_16" name="chr7:79742562-79742612" length="50" weight="1.000000" />
<sequence id="sequence_17" name="chr7:126042331-126042381" length="50" weight="1.000000" />
<sequence id="sequence_18" name="chr7:127091453-127091503" length="50" weight="1.000000" />
<sequence id="sequence_19" name="chr7:123366237-123366287" length="50" weight="1.000000" />
<sequence id="sequence_20" name="chr7:127770687-127770737" length="50" weight="1.000000" />
<sequence id="sequence_21" name="chr7:111179583-111179633" length="50" weight="1.000000" />
<sequence id="sequence_22" name="chr7:120980149-120980199" length="50" weight="1.000000" />
<sequence id="sequence_23" name="chr7:109115177-109115227" length="50" weight="1.000000" />
<sequence id="sequence_24" name="chr7:128301213-128301263" length="50" weight="1.000000" />
<sequence id="sequence_25" name="chr7:79358677-79358727" length="50" weight="1.000000" />
<sequence id="sequence_26" name="chr7:66196838-66196888" length="50" weight="1.000000" />
<sequence id="sequence_27" name="chr7:125428772-125428822" length="50" weight="1.000000" />
<sequence id="sequence_28" name="chr8:80493945-80493995" length="50" weight="1.000000" />
<sequence id="sequence_29" name="chr8:36283776-36283826" length="50" weight="1.000000" />
<sequence id="sequence_30" name="chr8:122315040-122315090" length="50" weight="1.000000" />
<sequence id="sequence_31" name="chr9:45803590-45803640" length="50" weight="1.000000" />
<sequence id="sequence_32" name="chrX:150564810-150564860" length="50" weight="1.000000" />
<sequence id="sequence_33" name="chrX:150549826-150549876" length="50" weight="1.000000" />
<letter_frequencies>
<alphabet_array>
<value letter_id="letter_A">0.256</value>
<value letter_id="letter_C">0.256</value>
<value letter_id="letter_G">0.276</value>
<value letter_id="letter_T">0.212</value>
</alphabet_array>
</letter_frequencies>
</training_set>
<model>
<command_line>meme GATAWeakEnh.radius25bp.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o GATAWeakEnh.radius25bp.meme.maxw25 </command_line>
<host>pongo</host>
<type>zoops</type>
<nmotifs>10</nmotifs>
<evalue_threshold>inf</evalue_threshold>
<object_function>E-value of product of p-values</object_function>
<min_width>8</min_width>
<max_width>25</max_width>
<minic>    0.00</minic>
<wg>11</wg>
<ws>1</ws>
<endgaps>yes</endgaps>
<minsites>2</minsites>
<maxsites>34</maxsites>
<wnsites>0.8</wnsites>
<prob>1</prob>
<spmap>uni</spmap>
<spfuzz>0.5</spfuzz>
<prior>dirichlet</prior>
<beta>0.01</beta>
<maxiter>50</maxiter>
<distance>1e-05</distance>
<num_sequences>34</num_sequences>
<num_positions>1700</num_positions>
<seed>0</seed>
<seqfrac>       1</seqfrac>
<strands>forward</strands>
<priors_file></priors_file>
<reason_for_stopping>Stopped because nmotifs = 10 reached.</reason_for_stopping>
<background_frequencies source="dataset with add-one prior applied">
<alphabet_array>
<value letter_id="letter_A">0.256</value>
<value letter_id="letter_C">0.256</value>
<value letter_id="letter_G">0.276</value>
<value letter_id="letter_T">0.212</value>
</alphabet_array>
</background_frequencies>
</model>
<motifs>
<motif id="motif_1" name="1" width="8" sites="25" ic="8.5" re="8.5" llr="147" e_value="3.7e+000" bayes_threshold="6.99147" elapsed_time="0.744000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">32</value>
<value letter_id="letter_C">141</value>
<value letter_id="letter_G">-1129</value>
<value letter_id="letter_T">-1129</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">149</value>
<value letter_id="letter_C">-1129</value>
<value letter_id="letter_G">-1129</value>
<value letter_id="letter_T">40</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-1129</value>
<value letter_id="letter_C">-1129</value>
<value letter_id="letter_G">138</value>
<value letter_id="letter_T">40</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">64</value>
<value letter_id="letter_C">-1129</value>
<value letter_id="letter_G">112</value>
<value letter_id="letter_T">-1129</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-1129</value>
<value letter_id="letter_C">-1129</value>
<value letter_id="letter_G">2</value>
<value letter_id="letter_T">176</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-9</value>
<value letter_id="letter_C">78</value>
<value letter_id="letter_G">-20</value>
<value letter_id="letter_T">-141</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">91</value>
<value letter_id="letter_C">-1129</value>
<value letter_id="letter_G">-1129</value>
<value letter_id="letter_T">129</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-1129</value>
<value letter_id="letter_C">-1129</value>
<value letter_id="letter_G">180</value>
<value letter_id="letter_T">-241</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.320000</value>
<value letter_id="letter_C">0.680000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.720000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.280000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.720000</value>
<value letter_id="letter_T">0.280000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.400000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.600000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.280000</value>
<value letter_id="letter_T">0.720000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.240000</value>
<value letter_id="letter_C">0.440000</value>
<value letter_id="letter_G">0.240000</value>
<value letter_id="letter_T">0.080000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.480000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.520000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.960000</value>
<value letter_id="letter_T">0.040000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
[CA][AT][GT][GA][TG][CAG][TA]G
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_12" position="7" strand="plus" pvalue="1.59e-05" >
<left_flank>CCACGCC</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TGAACTCCCG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_20" position="10" strand="plus" pvalue="1.00e-04" >
<left_flank>TGATAAACTG</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>GGAGGATAAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_3" position="6" strand="plus" pvalue="1.00e-04" >
<left_flank>CACTCA</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CAACCAAATC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_18" position="16" strand="plus" pvalue="1.96e-04" >
<left_flank>AGCAAGGTGA</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>GTGAGGGGTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_24" position="37" strand="plus" pvalue="2.88e-04" >
<left_flank>CCCAAGCCAC</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>ACCCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_25" position="23" strand="plus" pvalue="3.18e-04" >
<left_flank>GCTGCAAGAG</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>ATTGCAGAGG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_11" position="28" strand="plus" pvalue="3.18e-04" >
<left_flank>TTTGTCGGCA</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CCTATTGCAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_33" position="33" strand="plus" pvalue="5.96e-04" >
<left_flank>GGCTTTATCT</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CAGGCTCAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_30" position="41" strand="plus" pvalue="5.96e-04" >
<left_flank>TGTCTGTGGC</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>G</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_19" position="25" strand="plus" pvalue="5.96e-04" >
<left_flank>CTGAGACTCT</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>ACTCTCTGCC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="37" strand="plus" pvalue="5.96e-04" >
<left_flank>TCTGAGCCAG</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TGACC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_22" position="2" strand="plus" pvalue="7.66e-04" >
<left_flank>TG</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>ACACCTTCAT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="32" strand="plus" pvalue="8.55e-04" >
<left_flank>GTGGGGCTTG</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>AGGCATTTCT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_14" position="42" strand="plus" pvalue="9.65e-04" >
<left_flank>GGAGTGCTCA</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_7" position="18" strand="plus" pvalue="9.65e-04" >
<left_flank>TGCGATAGAG</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>GCGGGTGTCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_10" position="8" strand="plus" pvalue="1.06e-03" >
<left_flank>TTCAAAGG</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CAATATGCTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="0" strand="plus" pvalue="1.06e-03" >
<left_flank></left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CACGTGCTAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_28" position="14" strand="plus" pvalue="1.17e-03" >
<left_flank>AATGCTAGCC</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TCAACGGATA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_17" position="42" strand="plus" pvalue="1.17e-03" >
<left_flank>CCTTCAAAAA</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="1" strand="plus" pvalue="1.17e-03" >
<left_flank>T</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>AGGCCCACTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_32" position="20" strand="plus" pvalue="1.39e-03" >
<left_flank>AGTCATCACA</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TATGTGACAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="27" strand="plus" pvalue="2.00e-03" >
<left_flank>AAAGGCAGGA</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>TGGCTGTAAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_16" position="16" strand="plus" pvalue="3.11e-03" >
<left_flank>CTCCAAACTA</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>CTGTTTCCTT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_29" position="32" strand="plus" pvalue="3.36e-03" >
<left_flank>AACATGTTTC</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>CAAGCTGTAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_23" position="4" strand="plus" pvalue="3.48e-03" >
<left_flank>GGGT</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
</site>
<right_flank>GGGACAGCTG</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_2" name="2" width="21" sites="3" ic="29.4" re="31.2" llr="65" e_value="1.3e+002" bayes_threshold="8.85373" elapsed_time="1.296000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">38</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">65</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">185</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">127</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">27</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">27</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">127</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">38</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">138</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">38</value>
<value letter_id="letter_C">138</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.333333</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.666667</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.333333</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.333333</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.666667</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.666667</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.666667</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
A[TC][ACT][TC]TG[TC][GC][TG]T[TG]T[GC]T[TA][TC][AC]T[TC][CA]C
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_14" position="10" strand="plus" pvalue="2.33e-11" >
<left_flank>GCCAATGCCA</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>CGGAGTGCTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_21" position="11" strand="plus" pvalue="4.82e-11" >
<left_flank>CACAGAGAGC</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>TGATAGCGTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_0" position="15" strand="plus" pvalue="3.47e-10" >
<left_flank>GCTGAGGCCC</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>ACGTGGCAAG</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_3" name="3" width="14" sites="7" ic="16.5" re="16.6" llr="81" e_value="4.5e+002" bayes_threshold="7.32447" elapsed_time="1.824000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">174</value>
<value letter_id="letter_C">-84</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">105</value>
<value letter_id="letter_T">101</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">74</value>
<value letter_id="letter_G">-95</value>
<value letter_id="letter_T">101</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">-84</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">201</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">148</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">5</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">116</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">-95</value>
<value letter_id="letter_T">43</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">148</value>
<value letter_id="letter_G">5</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">116</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">-95</value>
<value letter_id="letter_T">43</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">186</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-84</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">201</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">148</value>
<value letter_id="letter_G">5</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">-945</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-945</value>
<value letter_id="letter_C">116</value>
<value letter_id="letter_G">-95</value>
<value letter_id="letter_T">43</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">174</value>
<value letter_id="letter_C">-945</value>
<value letter_id="letter_G">-945</value>
<value letter_id="letter_T">-57</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.857143</value>
<value letter_id="letter_C">0.142857</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.571429</value>
<value letter_id="letter_T">0.428571</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.428571</value>
<value letter_id="letter_G">0.142857</value>
<value letter_id="letter_T">0.428571</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.142857</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.857143</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.714286</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.285714</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.571429</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.142857</value>
<value letter_id="letter_T">0.285714</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.714286</value>
<value letter_id="letter_G">0.285714</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.571429</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.142857</value>
<value letter_id="letter_T">0.285714</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.142857</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.857143</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.714286</value>
<value letter_id="letter_G">0.285714</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.571429</value>
<value letter_id="letter_G">0.142857</value>
<value letter_id="letter_T">0.285714</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.857143</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.142857</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
A[GT][CT]T[AG][AT][CG][AT]GT[CG]C[CT]A
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_20" position="31" strand="plus" pvalue="2.45e-07" >
<left_flank>GGATAATGTC</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GCAGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_22" position="30" strand="plus" pvalue="3.24e-07" >
<left_flank>CTGGATCAGA</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>CACATA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_32" position="29" strand="plus" pvalue="1.28e-06" >
<left_flank>ACATGGCAGT</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>TCTCAGA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_4" position="2" strand="plus" pvalue="2.03e-06" >
<left_flank>GA</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>GGGCAAGTGG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_23" position="17" strand="plus" pvalue="4.49e-06" >
<left_flank>GTTTGGGGAC</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>TAAGGGCCTG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_15" position="22" strand="plus" pvalue="5.11e-06" >
<left_flank>AGACATGGTC</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GCATGTAAGT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_6" position="12" strand="plus" pvalue="7.95e-06" >
<left_flank>GCAGCCTAAC</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>CCCCTGGAAA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_4" name="4" width="9" sites="3" ic="16.2" re="16.8" llr="35" e_value="1.5e+003" bayes_threshold="8.54994" elapsed_time="2.272000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">38</value>
<value letter_id="letter_C">138</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">38</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">165</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">-823</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-823</value>
<value letter_id="letter_C">-823</value>
<value letter_id="letter_G">-823</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.333333</value>
<value letter_id="letter_C">0.666667</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.333333</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.666667</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
C[CA][TC]TCATCT
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_22" position="13" strand="plus" pvalue="2.22e-06" >
<left_flank>AGATGTGACA</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>GGATCAGAAG</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_8" position="12" strand="plus" pvalue="4.44e-06" >
<left_flank>CAGCCACCAC</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>GAACGCACTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_26" position="39" strand="plus" pvalue="7.12e-06" >
<left_flank>ACCCAGAGGC</left_flank>
<site>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>CC</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_5" name="5" width="12" sites="2" ic="22.0" re="22.5" llr="31" e_value="6.2e+003" bayes_threshold="9.37069" elapsed_time="2.708000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">185</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">96</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">123</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">96</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">123</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">185</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
GCT[AT][CT]CCTGATA
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_10" position="38" strand="plus" pvalue="3.59e-08" >
<left_flank>GAACGATGCG</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank></right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_1" position="21" strand="plus" pvalue="1.75e-07" >
<left_flank>GTGCTAGGCT</left_flank>
<site>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GTGGTCAGCG</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_6" name="6" width="8" sites="2" ic="15.0" re="15.8" llr="22" e_value="3.3e+003" bayes_threshold="9.51175" elapsed_time="3.100000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">185</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">96</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">123</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
TGT[CT]TCCT
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_16" position="25" strand="plus" pvalue="7.75e-06" >
<left_flank>ACAGGTGTTC</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>TAGCTACAAA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_17" position="20" strand="plus" pvalue="1.71e-05" >
<left_flank>GCTGGAGGCT</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
</site>
<right_flank>AGACCCTTCA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_7" name="7" width="10" sites="2" ic="18.0" re="18.6" llr="26" e_value="8.9e+003" bayes_threshold="9.44294" elapsed_time="3.496000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">96</value>
<value letter_id="letter_C">96</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">96</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">123</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.500000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
T[AC]CTCT[CT]CCA
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_24" position="16" strand="plus" pvalue="1.14e-06" >
<left_flank>TGGCGAGGAG</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>ACCCAAGCCA</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_9" position="4" strand="plus" pvalue="2.51e-06" >
<left_flank>TAGA</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_A"/>
</site>
<right_flank>GATAAAGGCA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_8" name="8" width="10" sites="2" ic="18.0" re="18.5" llr="26" e_value="1.2e+004" bayes_threshold="9.44294" elapsed_time="3.876000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">96</value>
<value letter_id="letter_G">85</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">85</value>
<value letter_id="letter_T">123</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.500000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.500000</value>
<value letter_id="letter_T">0.500000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
ACTCT[CG]T[GT]CC
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_2" position="6" strand="plus" pvalue="1.18e-06" >
<left_flank>GCCCAG</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>TGCTCCACAC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_19" position="33" strand="plus" pvalue="1.92e-06" >
<left_flank>CTCAGGGCAG</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>AGGGATG</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_9" name="9" width="8" sites="2" ic="16.0" re="16.1" llr="22" e_value="1.2e+004" bayes_threshold="8.66217" elapsed_time="4.232000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">185</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">185</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">1.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
TGCTAGCC
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_28" position="6" strand="plus" pvalue="1.47e-05" >
<left_flank>TTTAAA</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>AATGTGTGTC</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_23" position="39" strand="plus" pvalue="1.47e-05" >
<left_flank>GATAAGGGCC</left_flank>
<site>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_G"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>CGA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
<motif id="motif_10" name="10" width="8" sites="2" ic="16.0" re="16.0" llr="22" e_value="1.7e+004" bayes_threshold="8.66217" elapsed_time="4.608000">
<scores>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">223</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">196</value>
<value letter_id="letter_C">-765</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">-765</value>
<value letter_id="letter_C">196</value>
<value letter_id="letter_G">-765</value>
<value letter_id="letter_T">-765</value>
</alphabet_array>
</alphabet_matrix>
</scores>
<probabilities>
<alphabet_matrix>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">1.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">1.000000</value>
<value letter_id="letter_C">0.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
<alphabet_array>
<value letter_id="letter_A">0.000000</value>
<value letter_id="letter_C">1.000000</value>
<value letter_id="letter_G">0.000000</value>
<value letter_id="letter_T">0.000000</value>
</alphabet_array>
</alphabet_matrix>
</probabilities>
<regular_expression>
ATAAAACC
</regular_expression>
<contributing_sites>
<contributing_site sequence_id="sequence_31" position="33" strand="plus" pvalue="1.53e-05" >
<left_flank>GGAGGCAGAG</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>CCAGCTACT</right_flank>
</contributing_site>
<contributing_site sequence_id="sequence_26" position="9" strand="plus" pvalue="1.53e-05" >
<left_flank>GAGAGAGGA</left_flank>
<site>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_T"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_A"/>
<letter_ref letter_id="letter_C"/>
<letter_ref letter_id="letter_C"/>
</site>
<right_flank>AAAGGTTCCA</right_flank>
</contributing_site>
</contributing_sites>
</motif>
</motifs>
<scanned_sites_summary p_thresh="0.0001">
<scanned_sites sequence_id="sequence_0" pvalue="2.78e-05" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="15" pvalue="3.47e-10"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_1" pvalue="3.41e-04" num_sites="1"><scanned_site motif_id="motif_5" strand="plus" position="21" pvalue="1.75e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_2" pvalue="3.13e-03" num_sites="1"><scanned_site motif_id="motif_8" strand="plus" position="6" pvalue="1.18e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_3" pvalue="5.50e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_4" pvalue="6.41e-04" num_sites="1"><scanned_site motif_id="motif_3" strand="plus" position="2" pvalue="2.03e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_5" pvalue="9.76e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_6" pvalue="7.76e-02" num_sites="1"><scanned_site motif_id="motif_3" strand="plus" position="12" pvalue="7.95e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_7" pvalue="2.95e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_8" pvalue="1.55e-01" num_sites="1"><scanned_site motif_id="motif_4" strand="plus" position="12" pvalue="4.44e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_9" pvalue="3.34e-04" num_sites="1"><scanned_site motif_id="motif_7" strand="plus" position="4" pvalue="2.51e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_10" pvalue="7.51e-04" num_sites="1"><scanned_site motif_id="motif_5" strand="plus" position="38" pvalue="3.59e-08"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_11" pvalue="1.60e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_12" pvalue="4.26e-02" num_sites="1"><scanned_site motif_id="motif_1" strand="plus" position="7" pvalue="1.59e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_13" pvalue="7.83e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_14" pvalue="9.89e-09" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="10" pvalue="2.33e-11"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_15" pvalue="6.36e-04" num_sites="1"><scanned_site motif_id="motif_3" strand="plus" position="22" pvalue="5.11e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_16" pvalue="5.24e-03" num_sites="1"><scanned_site motif_id="motif_6" strand="plus" position="25" pvalue="7.75e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_17" pvalue="1.54e-04" num_sites="1"><scanned_site motif_id="motif_6" strand="plus" position="20" pvalue="1.71e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_18" pvalue="9.13e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_19" pvalue="3.47e-03" num_sites="1"><scanned_site motif_id="motif_8" strand="plus" position="33" pvalue="1.92e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_20" pvalue="5.77e-04" num_sites="1"><scanned_site motif_id="motif_3" strand="plus" position="31" pvalue="2.45e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_21" pvalue="1.23e-07" num_sites="1"><scanned_site motif_id="motif_2" strand="plus" position="11" pvalue="4.82e-11"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_22" pvalue="1.65e-05" num_sites="2"><scanned_site motif_id="motif_4" strand="plus" position="13" pvalue="2.22e-06"/>
<scanned_site motif_id="motif_3" strand="plus" position="30" pvalue="3.24e-07"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_23" pvalue="2.08e-03" num_sites="2"><scanned_site motif_id="motif_3" strand="plus" position="17" pvalue="4.49e-06"/>
<scanned_site motif_id="motif_9" strand="plus" position="39" pvalue="1.47e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_24" pvalue="2.03e-03" num_sites="1"><scanned_site motif_id="motif_7" strand="plus" position="16" pvalue="1.14e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_25" pvalue="2.16e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_26" pvalue="7.49e-04" num_sites="2"><scanned_site motif_id="motif_10" strand="plus" position="9" pvalue="1.53e-05"/>
<scanned_site motif_id="motif_4" strand="plus" position="39" pvalue="7.12e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_27" pvalue="7.53e-01" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_28" pvalue="4.11e-02" num_sites="1"><scanned_site motif_id="motif_9" strand="plus" position="6" pvalue="1.47e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_29" pvalue="1.86e-02" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_30" pvalue="3.49e-02" num_sites="0"></scanned_sites>
<scanned_sites sequence_id="sequence_31" pvalue="5.26e-01" num_sites="1"><scanned_site motif_id="motif_10" strand="plus" position="33" pvalue="1.53e-05"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_32" pvalue="3.60e-04" num_sites="1"><scanned_site motif_id="motif_3" strand="plus" position="29" pvalue="1.28e-06"/>
</scanned_sites>
<scanned_sites sequence_id="sequence_33" pvalue="9.98e-02" num_sites="0"></scanned_sites>
</scanned_sites_summary>
</MEME>
