******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.6.1 (Release date: Mon Mar 21 15:08:38 EST 2011) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= GATAWeakEnh.fa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr10:117106045-11710679 1.0000 754 chr11:78069758-78069976 1.0000 218 chr11:78069377-78070213 1.0000 836 chr12:86800698-86801426 1.0000 728 chr1:151953533-151954167 1.0000 634 chr1:86479043-86479715 1.0000 672 chr2:27343968-27344203 1.0000 235 chr2:168050257-168050711 1.0000 454 chr2:27389454-27390044 1.0000 590 chr4:107008070-107008715 1.0000 645 chr4:155788121-155788794 1.0000 673 chr5:84811415-84812023 1.0000 608 chr6:88189623-88190022 1.0000 399 chr6:72279407-72280038 1.0000 631 chr7:79358353-79359052 1.0000 699 chr7:120979850-120980499 1.0000 649 chr7:127770413-127771012 1.0000 599 chr7:127091179-127091778 1.0000 599 chr7:126042071-126042642 1.0000 571 chr7:66196514-66197213 1.0000 699 chr7:125428498-125429097 1.0000 599 chr7:79742313-79742862 1.0000 549 chr7:109114853-109115552 1.0000 699 chr7:103865594-103866193 1.0000 599 chr7:125472048-125472697 1.0000 649 chr7:128300914-128301562 1.0000 648 chr7:111179334-111179883 1.0000 549 chr7:123365988-123366537 1.0000 549 chr8:36283382-36284221 1.0000 839 chr8:80493297-80494643 1.0000 1346 chr8:122314938-122315193 1.0000 255 chr9:45803277-45803954 1.0000 677 chrX:150564665-150565006 1.0000 341 chrX:150549751-150549952 1.0000 201 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme GATAWeakEnh.fa -maxw 25 -dna -nmotifs 10 -maxsize 200000 -o GATAWeakEnh.bed.meme.maxw25 model: mod= zoops nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 8 maxw= 25 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 34 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 20393 N= 34 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.265 C 0.247 G 0.244 T 0.245 Background letter frequencies (from dataset with add-one prior applied): A 0.265 C 0.247 G 0.244 T 0.245 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 21 sites = 34 llr = 337 E-value = 6.9e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A 2::12:11232141:617:21 pos.-specific C 239237776514169281657 probability G :4:1411:1:26131:113:1 matrix T 6316:222125:41:3:112: bits 2.0 1.8 1.6 1.4 * Relative 1.2 * * * Entropy 1.0 * * * (14.3 bits) 0.8 * *** * * * * 0.6 * * *** * ****** * 0.4 ************ ******** 0.2 ********************* 0.0 --------------------- Multilevel TGCTGCCCCCTGACCACACCC consensus AC CCT T AACTG T GT sequence CT A A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------------- chr7:125428498-125429097 385 6.84e-11 CAGGCAACTC TGCTCCCCCCTCACCCCACCC CTCAAATTGT chr7:126042071-126042642 545 8.83e-08 GAGCACTTCC CCCTACCCCCAGAACACACCC AGGAAC chr7:125472048-125472697 246 1.71e-07 CTGTTTCAAT CTCTGGCCCCTGACCACACTA GCAGCCCCAA chr7:79358353-79359052 658 1.71e-07 CTGTTTCCAC TGCACCCCCAAGTCCACTGCC TCCTGTGTCC chr2:27389454-27390044 236 1.94e-07 CTCAGGCTAC ACCCACCCCATCACCACTCCC ACCAGTGACC chr8:122314938-122315193 99 2.84e-07 GCCCACCACG TGTGGCCCACTGACCTCACCC CCTTCCGGAC chr11:78069377-78070213 473 5.85e-07 CAGGCCCAGA CTCTGTTCCTGCTCCACACCC TGATTGCAGA chr11:78069758-78069976 92 5.85e-07 CAGGCCCAGA CTCTGTTCCTGCTCCACACCC TGATTGCAGA chr2:168050257-168050711 128 1.16e-06 CGGAGCTCCC TGCAGCCCTCTGACCACCGCG GATGCTGGTT chr7:127091179-127091778 68 1.61e-06 GAAGTGGTTC TTCACCACACTGACCACATCC CCAGGTTGCC chr7:66196514-66197213 640 2.00e-06 GGAGGAAGCC TGCTAGCCCTTGGGCCCACAC ATGGCTTCAG chr7:109114853-109115552 654 2.22e-06 ACTTAGGGTT TTCTCCCCCCCATCCTCTCTC AGAACAAATG chr7:123365988-123366537 399 2.47e-06 CCTGACTCCC TGCTGCACCATCTGCCCTCTC TAGATTATCT chr7:127770413-127771012 404 3.37e-06 GGGCCAGCTG TGCGGCCCCAAGTCGACATCC ACTCCAGTTG chrX:150549751-150549952 40 6.11e-06 TCTTCTTCTC TCCCACGCCCTGGGCTCATCC TAGGGAGTAG chr1:151953533-151954167 344 6.73e-06 GCCTCAGCAT ATCTGCCTGCAGGCCTCAGTC TGGAGCAGGA chr5:84811415-84812023 98 8.14e-06 AAATATGAAA ATCCACTCATTGTCCCCAGCC TGATTGTATC chr7:128300914-128301562 51 8.95e-06 CTAGAGGGTC TCTCTCCCTCTGAGCTCACCC CTTTTTCTTT chr4:107008070-107008715 518 9.82e-06 AGAGGACGTT CCCTGCCTGCAGACCTCAGTG CCTCCTAGCA chr8:36283382-36284221 312 1.18e-05 GGGGGCAGAC TGCTCCTCAGTGTGCACACAG GTCACACTGT chr7:111179334-111179883 235 1.29e-05 CTCTTCTGGA ACCCACCCCCAGGGCTCACAG AGAGCATCCT chr1:86479043-86479715 182 1.29e-05 CTGACACACT TCCTGCCTGTGCACCTCCCAC CTAAGTGTGA chr2:27343968-27344203 67 2.02e-05 ACTGCTCAGA CCCAGCCCAAGCAGCAAACTC TCCTTATCAG chr6:72279407-72280038 120 2.20e-05 TTTGTAATTA TGCCCCCCCCCACACACACAC ACACATATGC chr4:155788121-155788794 493 2.61e-05 GGCCTTTCCA TCCTCCCATCTCCCCACGCCA TGAAGCTGCC chr6:88189623-88190022 317 3.36e-05 GGCTGGGCTG TGTTGCCCCAGCTGCAAGGCC TTGGCCGAGG chr10:117106045-11710679 461 3.65e-05 TGACTCAGCC ATCACCCTCAAGACCAAAGCA AACATACAGT chrX:150564665-150565006 184 3.96e-05 TATGTGACAG TCCTATCTCAGAACCACAGAA GCAAGGCTCT chr9:45803277-45803954 530 3.96e-05 CTCTTTGGCT TGCTCTCCCCAGTTCTCAGGA GCCAAGTGAA chr12:86800698-86801426 4 8.67e-05 CAA AGCTCTCCAATGACTCAACTC CCAGGGAGGC chr7:103865594-103866193 195 9.34e-05 TAAAAATGCC ATATGCTTTTTCTCCCCACCC TTTGTCCTAC chr7:79742313-79742862 395 1.45e-04 ACTCATGGGC CGCTGTCACCTCCCGAGACAC CGAGGTGGCT chr8:80493297-80494643 453 3.05e-04 GTCCAGCGCC TGCCCTGACCTCTGCAGTCTC TATGTCCAGT chr7:120979850-120980499 398 3.70e-04 ATAGTACAAC TGCTGGTTCCTGATAACCTCC TGGAGACGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:125428498-125429097 6.8e-11 384_[+1]_194 chr7:126042071-126042642 8.8e-08 544_[+1]_6 chr7:125472048-125472697 1.7e-07 245_[+1]_383 chr7:79358353-79359052 1.7e-07 657_[+1]_21 chr2:27389454-27390044 1.9e-07 235_[+1]_334 chr8:122314938-122315193 2.8e-07 98_[+1]_136 chr11:78069377-78070213 5.8e-07 472_[+1]_343 chr11:78069758-78069976 5.8e-07 91_[+1]_106 chr2:168050257-168050711 1.2e-06 127_[+1]_306 chr7:127091179-127091778 1.6e-06 67_[+1]_511 chr7:66196514-66197213 2e-06 639_[+1]_39 chr7:109114853-109115552 2.2e-06 653_[+1]_25 chr7:123365988-123366537 2.5e-06 398_[+1]_130 chr7:127770413-127771012 3.4e-06 403_[+1]_175 chrX:150549751-150549952 6.1e-06 39_[+1]_141 chr1:151953533-151954167 6.7e-06 343_[+1]_270 chr5:84811415-84812023 8.1e-06 97_[+1]_490 chr7:128300914-128301562 8.9e-06 50_[+1]_577 chr4:107008070-107008715 9.8e-06 517_[+1]_107 chr8:36283382-36284221 1.2e-05 311_[+1]_507 chr7:111179334-111179883 1.3e-05 234_[+1]_294 chr1:86479043-86479715 1.3e-05 181_[+1]_470 chr2:27343968-27344203 2e-05 66_[+1]_148 chr6:72279407-72280038 2.2e-05 119_[+1]_491 chr4:155788121-155788794 2.6e-05 492_[+1]_160 chr6:88189623-88190022 3.4e-05 316_[+1]_62 chr10:117106045-11710679 3.6e-05 460_[+1]_273 chrX:150564665-150565006 4e-05 183_[+1]_137 chr9:45803277-45803954 4e-05 529_[+1]_127 chr12:86800698-86801426 8.7e-05 3_[+1]_704 chr7:103865594-103866193 9.3e-05 194_[+1]_384 chr7:79742313-79742862 0.00014 394_[+1]_134 chr8:80493297-80494643 0.00031 452_[+1]_873 chr7:120979850-120980499 0.00037 397_[+1]_231 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=21 seqs=34 chr7:125428498-125429097 ( 385) TGCTCCCCCCTCACCCCACCC 1 chr7:126042071-126042642 ( 545) CCCTACCCCCAGAACACACCC 1 chr7:125472048-125472697 ( 246) CTCTGGCCCCTGACCACACTA 1 chr7:79358353-79359052 ( 658) TGCACCCCCAAGTCCACTGCC 1 chr2:27389454-27390044 ( 236) ACCCACCCCATCACCACTCCC 1 chr8:122314938-122315193 ( 99) TGTGGCCCACTGACCTCACCC 1 chr11:78069377-78070213 ( 473) CTCTGTTCCTGCTCCACACCC 1 chr11:78069758-78069976 ( 92) CTCTGTTCCTGCTCCACACCC 1 chr2:168050257-168050711 ( 128) TGCAGCCCTCTGACCACCGCG 1 chr7:127091179-127091778 ( 68) TTCACCACACTGACCACATCC 1 chr7:66196514-66197213 ( 640) TGCTAGCCCTTGGGCCCACAC 1 chr7:109114853-109115552 ( 654) TTCTCCCCCCCATCCTCTCTC 1 chr7:123365988-123366537 ( 399) TGCTGCACCATCTGCCCTCTC 1 chr7:127770413-127771012 ( 404) TGCGGCCCCAAGTCGACATCC 1 chrX:150549751-150549952 ( 40) TCCCACGCCCTGGGCTCATCC 1 chr1:151953533-151954167 ( 344) ATCTGCCTGCAGGCCTCAGTC 1 chr5:84811415-84812023 ( 98) ATCCACTCATTGTCCCCAGCC 1 chr7:128300914-128301562 ( 51) TCTCTCCCTCTGAGCTCACCC 1 chr4:107008070-107008715 ( 518) CCCTGCCTGCAGACCTCAGTG 1 chr8:36283382-36284221 ( 312) TGCTCCTCAGTGTGCACACAG 1 chr7:111179334-111179883 ( 235) ACCCACCCCCAGGGCTCACAG 1 chr1:86479043-86479715 ( 182) TCCTGCCTGTGCACCTCCCAC 1 chr2:27343968-27344203 ( 67) CCCAGCCCAAGCAGCAAACTC 1 chr6:72279407-72280038 ( 120) TGCCCCCCCCCACACACACAC 1 chr4:155788121-155788794 ( 493) TCCTCCCATCTCCCCACGCCA 1 chr6:88189623-88190022 ( 317) TGTTGCCCCAGCTGCAAGGCC 1 chr10:117106045-11710679 ( 461) ATCACCCTCAAGACCAAAGCA 1 chrX:150564665-150565006 ( 184) TCCTATCTCAGAACCACAGAA 1 chr9:45803277-45803954 ( 530) TGCTCTCCCCAGTTCTCAGGA 1 chr12:86800698-86801426 ( 4) AGCTCTCCAATGACTCAACTC 1 chr7:103865594-103866193 ( 195) ATATGCTTTTTCTCCCCACCC 1 chr7:79742313-79742862 ( 395) CGCTGTCACCTCCCGAGACAC 1 chr8:80493297-80494643 ( 453) TGCCCTGACCTCTGCAGTCTC 1 chr7:120979850-120980499 ( 398) TGCTGGTTCCTGATAACCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 19713 bayes= 9.17691 E= 6.9e-007 -36 -26 -1173 127 -1173 25 85 11 -317 184 -1173 -147 -85 -26 -205 127 -36 39 85 -305 -1173 152 -147 -25 -217 152 -205 -47 -158 152 -1173 -25 -58 132 -147 -106 0 110 -305 -47 -17 -207 -47 111 -158 52 119 -1173 74 -148 -105 53 -217 132 12 -205 -317 184 -205 -305 108 -48 -1173 11 -117 174 -205 -1173 142 -148 -205 -73 -1173 132 12 -106 -36 110 -305 -6 -85 158 -105 -1173 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 34 E= 6.9e-007 0.205882 0.205882 0.000000 0.588235 0.000000 0.294118 0.441176 0.264706 0.029412 0.882353 0.000000 0.088235 0.147059 0.205882 0.058824 0.588235 0.205882 0.323529 0.441176 0.029412 0.000000 0.705882 0.088235 0.205882 0.058824 0.705882 0.058824 0.176471 0.088235 0.705882 0.000000 0.205882 0.176471 0.617647 0.088235 0.117647 0.264706 0.529412 0.029412 0.176471 0.235294 0.058824 0.176471 0.529412 0.088235 0.352941 0.558824 0.000000 0.441176 0.088235 0.117647 0.352941 0.058824 0.617647 0.264706 0.058824 0.029412 0.882353 0.058824 0.029412 0.558824 0.176471 0.000000 0.264706 0.117647 0.823529 0.058824 0.000000 0.705882 0.088235 0.058824 0.147059 0.000000 0.617647 0.264706 0.117647 0.205882 0.529412 0.029412 0.235294 0.147059 0.735294 0.117647 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 regular expression -------------------------------------------------------------------------------- [TAC][GCT]C[TC][GCA][CT]C[CT]C[CA][TA][GC][AT][CG]C[AT]CA[CG][CTA]C -------------------------------------------------------------------------------- Time 20.40 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 11 sites = 34 llr = 278 E-value = 5.4e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 6:732126:1: pos.-specific C ::1::48:7:: probability G 3a:785:1329 matrix T 1:2::::3:71 bits 2.0 * 1.8 * 1.6 * 1.4 * * Relative 1.2 * * * * Entropy 1.0 * ** * *** (11.8 bits) 0.8 ***** * *** 0.6 ******* *** 0.4 *********** 0.2 *********** 0.0 ----------- Multilevel AGAGGGCACTG consensus G AACATGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ----------- chr4:107008070-107008715 588 2.38e-06 ATGACAAGTC AGAGGCCAGTG GCCATGGGCA chr1:86479043-86479715 518 2.38e-06 TTAGGATAAA AGAGGCCAGTG CTAATTAATG chr11:78069377-78070213 521 2.86e-06 ACCCACAGTT AGAGGCCACGG CCACAGGCTC chr11:78069758-78069976 140 2.86e-06 ACCCACAGTT AGAGGCCACGG CCACAGGCTC chr7:111179334-111179883 343 5.04e-06 CCTAGGGAGG GGAGGGCTCTG ATGCTGGTAG chr7:125472048-125472697 39 5.04e-06 AAATGCCACT AGAGGGCGCTG CCTCGCATAC chr12:86800698-86801426 254 2.23e-05 CACCAACAGC TGAGGCCACTG CCAGGAAGTC chr8:80493297-80494643 382 2.71e-05 TTCGTACACA AGAAGCCACTT TCTTAAGGGA chr7:125428498-125429097 282 2.71e-05 AAGCTGGGAG AGAAGCCACTT GCCCAGAATC chr4:155788121-155788794 385 2.71e-05 CCACCAAGGA AGAGGCCACAG AAGGTCTAGA chr7:79358353-79359052 171 3.19e-05 TAGAAATGGC AGAGAACACTG CTTCATGAGA chrX:150549751-150549952 189 3.59e-05 CCAGATATGA GGTAGGCACTG GA chr9:45803277-45803954 467 3.59e-05 GGGCCTCCCA GGAGGACTCTG CACATGGGGT chr7:128300914-128301562 13 3.59e-05 TCTTCTCCTG GGAGAGCTCTG TAGAGTTGGG chr1:151953533-151954167 451 3.59e-05 CCATCCCTAC AGAGGGAGCTG CCTCAATTTC chr7:126042071-126042642 532 4.74e-05 CTGTAACCAC AGAGAGCACTT CCCCCTACCC chr7:127091179-127091778 310 4.74e-05 TGAGGGGTGC GGAAGCAACTG CAAATGGGGG chr5:84811415-84812023 404 5.33e-05 ACATGTTGTT GGAAGGCTGTG CAAAATTTGA chr7:66196514-66197213 274 6.39e-05 TGGGGAAGTC GGAGGGCTGGG CAGGGCGGGG chr7:127770413-127771012 187 6.39e-05 CCCACCTCTC AGAAGGCACAG AGAATTGCCG chr8:122314938-122315193 44 7.53e-05 CAGGACATCC AGTGGGAAGTG CAGGTGGAGC chr6:72279407-72280038 482 9.17e-05 GTTCAATGGT TGAGAGCACTG GCTGCTCTTC chr7:103865594-103866193 460 1.13e-04 TAAGGGTCTT AGAAACCTGTG CTCCAAAATT chrX:150564665-150565006 237 1.24e-04 AGAGATGTGC AGAGGACTGGG AAGCGAGTCT chr8:36283382-36284221 808 1.24e-04 CTCCAAAGGG AGAAAGCTCGG GGGTAACACA chr7:109114853-109115552 291 1.24e-04 AACCAGAGTG AGCGGCCAGGG CTGCTGCCCC chr7:79742313-79742862 482 1.42e-04 GCAACTCCTC AGTGGGAGCTG GCCGCGGCCT chr2:27343968-27344203 50 1.53e-04 AGGATCAATA AGCAGGAACTG CTCAGACCCA chr2:27389454-27390044 260 1.78e-04 CACTCCCACC AGTGACCACTT AGGCAGCCTA chr7:120979850-120980499 184 2.77e-04 CTTATGATGC AGAAGCCATGG CAAAGTCCAC chr2:168050257-168050711 173 2.77e-04 GAATGCACTC GGTGGCCCCTG TATCCGGCTG chr10:117106045-11710679 673 3.42e-04 CTGACTTGGG GGAAGGAGGTG GAGAGAACCC chr6:88189623-88190022 303 3.69e-04 GACCTCGGGC GGCGGGCTGGG CTGTGTTGCC chr7:123365988-123366537 8 4.59e-04 ATCAGGA AGTGGAAACTT GCAGGTCCTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:107008070-107008715 2.4e-06 587_[+2]_47 chr1:86479043-86479715 2.4e-06 517_[+2]_144 chr11:78069377-78070213 2.9e-06 520_[+2]_305 chr11:78069758-78069976 2.9e-06 139_[+2]_68 chr7:111179334-111179883 5e-06 342_[+2]_196 chr7:125472048-125472697 5e-06 38_[+2]_600 chr12:86800698-86801426 2.2e-05 253_[+2]_464 chr8:80493297-80494643 2.7e-05 381_[+2]_954 chr7:125428498-125429097 2.7e-05 281_[+2]_307 chr4:155788121-155788794 2.7e-05 384_[+2]_278 chr7:79358353-79359052 3.2e-05 170_[+2]_518 chrX:150549751-150549952 3.6e-05 188_[+2]_2 chr9:45803277-45803954 3.6e-05 466_[+2]_200 chr7:128300914-128301562 3.6e-05 12_[+2]_625 chr1:151953533-151954167 3.6e-05 450_[+2]_173 chr7:126042071-126042642 4.7e-05 531_[+2]_29 chr7:127091179-127091778 4.7e-05 309_[+2]_279 chr5:84811415-84812023 5.3e-05 403_[+2]_194 chr7:66196514-66197213 6.4e-05 273_[+2]_415 chr7:127770413-127771012 6.4e-05 186_[+2]_402 chr8:122314938-122315193 7.5e-05 43_[+2]_201 chr6:72279407-72280038 9.2e-05 481_[+2]_139 chr7:103865594-103866193 0.00011 459_[+2]_129 chrX:150564665-150565006 0.00012 236_[+2]_94 chr8:36283382-36284221 0.00012 807_[+2]_21 chr7:109114853-109115552 0.00012 290_[+2]_398 chr7:79742313-79742862 0.00014 481_[+2]_57 chr2:27343968-27344203 0.00015 49_[+2]_175 chr2:27389454-27390044 0.00018 259_[+2]_320 chr7:120979850-120980499 0.00028 183_[+2]_455 chr2:168050257-168050711 0.00028 172_[+2]_271 chr10:117106045-11710679 0.00034 672_[+2]_71 chr6:88189623-88190022 0.00037 302_[+2]_86 chr7:123365988-123366537 0.00046 7_[+2]_531 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=11 seqs=34 chr4:107008070-107008715 ( 588) AGAGGCCAGTG 1 chr1:86479043-86479715 ( 518) AGAGGCCAGTG 1 chr11:78069377-78070213 ( 521) AGAGGCCACGG 1 chr11:78069758-78069976 ( 140) AGAGGCCACGG 1 chr7:111179334-111179883 ( 343) GGAGGGCTCTG 1 chr7:125472048-125472697 ( 39) AGAGGGCGCTG 1 chr12:86800698-86801426 ( 254) TGAGGCCACTG 1 chr8:80493297-80494643 ( 382) AGAAGCCACTT 1 chr7:125428498-125429097 ( 282) AGAAGCCACTT 1 chr4:155788121-155788794 ( 385) AGAGGCCACAG 1 chr7:79358353-79359052 ( 171) AGAGAACACTG 1 chrX:150549751-150549952 ( 189) GGTAGGCACTG 1 chr9:45803277-45803954 ( 467) GGAGGACTCTG 1 chr7:128300914-128301562 ( 13) GGAGAGCTCTG 1 chr1:151953533-151954167 ( 451) AGAGGGAGCTG 1 chr7:126042071-126042642 ( 532) AGAGAGCACTT 1 chr7:127091179-127091778 ( 310) GGAAGCAACTG 1 chr5:84811415-84812023 ( 404) GGAAGGCTGTG 1 chr7:66196514-66197213 ( 274) GGAGGGCTGGG 1 chr7:127770413-127771012 ( 187) AGAAGGCACAG 1 chr8:122314938-122315193 ( 44) AGTGGGAAGTG 1 chr6:72279407-72280038 ( 482) TGAGAGCACTG 1 chr7:103865594-103866193 ( 460) AGAAACCTGTG 1 chrX:150564665-150565006 ( 237) AGAGGACTGGG 1 chr8:36283382-36284221 ( 808) AGAAAGCTCGG 1 chr7:109114853-109115552 ( 291) AGCGGCCAGGG 1 chr7:79742313-79742862 ( 482) AGTGGGAGCTG 1 chr2:27343968-27344203 ( 50) AGCAGGAACTG 1 chr2:27389454-27390044 ( 260) AGTGACCACTT 1 chr7:120979850-120980499 ( 184) AGAAGCCATGG 1 chr2:168050257-168050711 ( 173) GGTGGCCCCTG 1 chr10:117106045-11710679 ( 673) GGAAGGAGGTG 1 chr6:88189623-88190022 ( 303) GGCGGGCTGGG 1 chr7:123365988-123366537 ( 8) AGTGGAAACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 11 n= 20053 bayes= 9.27128 E= 5.4e-003 129 -1173 27 -205 -1173 -1173 203 -1173 147 -148 -1173 -47 29 -1173 147 -1173 -36 -1173 170 -1173 -117 74 95 -1173 -36 169 -1173 -1173 115 -306 -105 11 -1173 146 27 -305 -217 -1173 -5 153 -1173 -1173 180 -73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 11 nsites= 34 E= 5.4e-003 0.647059 0.000000 0.294118 0.058824 0.000000 0.000000 1.000000 0.000000 0.735294 0.088235 0.000000 0.176471 0.323529 0.000000 0.676471 0.000000 0.205882 0.000000 0.794118 0.000000 0.117647 0.411765 0.470588 0.000000 0.205882 0.794118 0.000000 0.000000 0.588235 0.029412 0.117647 0.264706 0.000000 0.676471 0.294118 0.029412 0.058824 0.000000 0.235294 0.705882 0.000000 0.000000 0.852941 0.147059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 regular expression -------------------------------------------------------------------------------- [AG]GA[GA][GA][GC][CA][AT][CG][TG]G -------------------------------------------------------------------------------- Time 39.97 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 15 sites = 34 llr = 295 E-value = 3.2e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A 18::::1:13211:: pos.-specific C 8::25351521:5:1 probability G 1:a4:1112:44427 matrix T :2:456481544:82 bits 2.0 * 1.8 * 1.6 * 1.4 * * Relative 1.2 ** * * Entropy 1.0 *** * * * (12.5 bits) 0.8 *** ** * *** 0.6 *** ** * **** 0.4 ********** **** 0.2 *************** 0.0 --------------- Multilevel CAGGCTCTCTGGCTG consensus TTCT GATTG T sequence C C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- chr11:78069377-78070213 535 6.07e-09 GCCACGGCCA CAGGCTCTCTGGCTG GTAGAGATAT chr11:78069758-78069976 154 6.07e-09 GCCACGGCCA CAGGCTCTCTGGCTG GTAGAGATAT chr8:80493297-80494643 1189 1.64e-07 CTAGTATAAC CAGTTTCTCCTGCTG AGAGGAGACA chr7:128300914-128301562 525 1.53e-06 CTCTGGCATT CAGTTTTTCCATCTG ATAAATGGAA chr7:79358353-79359052 129 1.53e-06 CCTCTGATGA CAGCCTCTCCATCTG CTGGAGTACG chr7:103865594-103866193 524 2.09e-06 CATCTGTAAC CAGGCTCTTTTTCTT CATCTAACCC chr9:45803277-45803954 650 2.42e-06 CTGACACCCC CAGTTCTTTTGTCTG CAAGAATGAC chr7:66196514-66197213 183 2.42e-06 GCGCGGCAGA GAGGCTCTGTGGCTG GGTGGCTGAT chr4:155788121-155788794 609 3.71e-06 GCTGACGCCT CAGTTTTTCCCTGTG ATTGGACTTT chr7:123365988-123366537 203 4.24e-06 CATGGCCCTT CAGGTTCTCTGTGGT CCTTCCCTGG chr7:79742313-79742862 434 4.89e-06 CTGACACGCA CAGTCCCTCCGGGTT CACAGGGAGG chr8:122314938-122315193 149 7.20e-06 GTGGCCAGGG CAGGCTATCTCGGTG GCGGCACTAA chr6:88189623-88190022 258 7.20e-06 TGGAAAAATA CAGCCTTTGTGGCGG CGCGTGTCAC chr7:127091179-127091778 27 1.04e-05 TGGAGCAAAG CAGCTGCTCATTCTG GCTCCACCTT chr10:117106045-11710679 4 1.04e-05 GCA CTGTTTTTCTTAGTG TTCTGTTTTT chr1:151953533-151954167 531 3.08e-05 TTGCTGGTAA CAGTTTTCCATTCTT AAAAGAATAG chr7:120979850-120980499 576 3.41e-05 GGAGACTGGC CAGTCCTTGAAGGTT TTGGATTCTT chr7:109114853-109115552 261 5.48e-05 AAGAGGCTGC ATGCTCCTCTGGGTG GAGGCAACCA chr7:125472048-125472697 19 6.00e-05 CCCTCTGAGC CAGTTTCTCAAAATG CCACTAGAGG chrX:150549751-150549952 72 7.17e-05 AGGGAGTAGC CAGACTCTAATGGTG ATAAGCTCTA chr1:86479043-86479715 644 7.80e-05 CAATACTTTT CTGCTTTTTAGGGTT TTGTTTTTAT chr2:27389454-27390044 171 8.49e-05 CCAGCAAAGC CAGGCTTCTTTTCGG GGCTCAGCAC chr2:168050257-168050711 218 8.49e-05 CGCTGCGATA GAGCTTATCTGGCGG GTGTCAGGGT chr8:36283382-36284221 74 1.00e-04 CATCCATCAA CTGTTTTGCTTAGTG CGGTGAAGGT chr6:72279407-72280038 237 1.18e-04 AGATAATCTT GAGCTTCTGATACTT CCTTCGCCTC chr7:111179334-111179883 367 1.59e-04 CTGGTAGTAG GAGGCCTGGAGGCTG TAATGAGGCC chr7:126042071-126042642 225 1.59e-04 AATGGAGACA CAGGTCCTACATCTC TAAGGAACTG chr5:84811415-84812023 27 1.85e-04 AGAAAAACAG AAGGTCATCTTTGGG TCAGTGCTAT chr7:127770413-127771012 463 1.98e-04 GACATCATAG AAGGTGCTGTCTCTG TGGTCTGCCA chrX:150564665-150565006 274 2.44e-04 CCAGCTTCTA GTGTCCCTGCCTGTG TTCCCAGGGG chr12:86800698-86801426 286 2.78e-04 TGGCCTCATT CAGCCCCTTTAGGGC GGGGTAAAAA chr4:107008070-107008715 357 3.16e-04 GAAGCAGATG CAGGCCTGCAGTATT TGTGATTAGG chr7:125428498-125429097 201 5.35e-04 CAGCTCAGGG CAGGCTGTGGTGGTC ACCTTACCCA chr2:27343968-27344203 16 9.22e-04 GAAGAGTTTC CTGTCCGCAATTCTG CTGTCATTAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:78069377-78070213 6.1e-09 534_[+3]_287 chr11:78069758-78069976 6.1e-09 153_[+3]_50 chr8:80493297-80494643 1.6e-07 1188_[+3]_143 chr7:128300914-128301562 1.5e-06 524_[+3]_109 chr7:79358353-79359052 1.5e-06 128_[+3]_556 chr7:103865594-103866193 2.1e-06 523_[+3]_61 chr9:45803277-45803954 2.4e-06 649_[+3]_13 chr7:66196514-66197213 2.4e-06 182_[+3]_502 chr4:155788121-155788794 3.7e-06 608_[+3]_50 chr7:123365988-123366537 4.2e-06 202_[+3]_332 chr7:79742313-79742862 4.9e-06 433_[+3]_101 chr8:122314938-122315193 7.2e-06 148_[+3]_92 chr6:88189623-88190022 7.2e-06 257_[+3]_127 chr7:127091179-127091778 1e-05 26_[+3]_558 chr10:117106045-11710679 1e-05 3_[+3]_736 chr1:151953533-151954167 3.1e-05 530_[+3]_89 chr7:120979850-120980499 3.4e-05 575_[+3]_59 chr7:109114853-109115552 5.5e-05 260_[+3]_424 chr7:125472048-125472697 6e-05 18_[+3]_616 chrX:150549751-150549952 7.2e-05 71_[+3]_115 chr1:86479043-86479715 7.8e-05 643_[+3]_14 chr2:27389454-27390044 8.5e-05 170_[+3]_405 chr2:168050257-168050711 8.5e-05 217_[+3]_222 chr8:36283382-36284221 0.0001 73_[+3]_751 chr6:72279407-72280038 0.00012 236_[+3]_380 chr7:111179334-111179883 0.00016 366_[+3]_168 chr7:126042071-126042642 0.00016 224_[+3]_332 chr5:84811415-84812023 0.00018 26_[+3]_567 chr7:127770413-127771012 0.0002 462_[+3]_122 chrX:150564665-150565006 0.00024 273_[+3]_53 chr12:86800698-86801426 0.00028 285_[+3]_428 chr4:107008070-107008715 0.00032 356_[+3]_274 chr7:125428498-125429097 0.00054 200_[+3]_384 chr2:27343968-27344203 0.00092 15_[+3]_205 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=34 chr11:78069377-78070213 ( 535) CAGGCTCTCTGGCTG 1 chr11:78069758-78069976 ( 154) CAGGCTCTCTGGCTG 1 chr8:80493297-80494643 ( 1189) CAGTTTCTCCTGCTG 1 chr7:128300914-128301562 ( 525) CAGTTTTTCCATCTG 1 chr7:79358353-79359052 ( 129) CAGCCTCTCCATCTG 1 chr7:103865594-103866193 ( 524) CAGGCTCTTTTTCTT 1 chr9:45803277-45803954 ( 650) CAGTTCTTTTGTCTG 1 chr7:66196514-66197213 ( 183) GAGGCTCTGTGGCTG 1 chr4:155788121-155788794 ( 609) CAGTTTTTCCCTGTG 1 chr7:123365988-123366537 ( 203) CAGGTTCTCTGTGGT 1 chr7:79742313-79742862 ( 434) CAGTCCCTCCGGGTT 1 chr8:122314938-122315193 ( 149) CAGGCTATCTCGGTG 1 chr6:88189623-88190022 ( 258) CAGCCTTTGTGGCGG 1 chr7:127091179-127091778 ( 27) CAGCTGCTCATTCTG 1 chr10:117106045-11710679 ( 4) CTGTTTTTCTTAGTG 1 chr1:151953533-151954167 ( 531) CAGTTTTCCATTCTT 1 chr7:120979850-120980499 ( 576) CAGTCCTTGAAGGTT 1 chr7:109114853-109115552 ( 261) ATGCTCCTCTGGGTG 1 chr7:125472048-125472697 ( 19) CAGTTTCTCAAAATG 1 chrX:150549751-150549952 ( 72) CAGACTCTAATGGTG 1 chr1:86479043-86479715 ( 644) CTGCTTTTTAGGGTT 1 chr2:27389454-27390044 ( 171) CAGGCTTCTTTTCGG 1 chr2:168050257-168050711 ( 218) GAGCTTATCTGGCGG 1 chr8:36283382-36284221 ( 74) CTGTTTTGCTTAGTG 1 chr6:72279407-72280038 ( 237) GAGCTTCTGATACTT 1 chr7:111179334-111179883 ( 367) GAGGCCTGGAGGCTG 1 chr7:126042071-126042642 ( 225) CAGGTCCTACATCTC 1 chr5:84811415-84812023 ( 27) AAGGTCATCTTTGGG 1 chr7:127770413-127771012 ( 463) AAGGTGCTGTCTCTG 1 chrX:150564665-150565006 ( 274) GTGTCCCTGCCTGTG 1 chr12:86800698-86801426 ( 286) CAGCCCCTTTAGGGC 1 chr4:107008070-107008715 ( 357) CAGGCCTGCAGTATT 1 chr7:125428498-125429097 ( 201) CAGGCTGTGGTGGTC 1 chr2:27343968-27344203 ( 16) CTGTCCGCAATTCTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 19917 bayes= 9.19178 E= 3.2e-002 -158 163 -73 -1173 164 -1173 -1173 -47 -1173 -1173 203 -1173 -317 -7 65 53 -1173 102 -1173 103 -1173 39 -205 134 -158 102 -205 53 -1173 -148 -147 175 -158 110 -5 -73 15 -26 -305 94 -58 -107 53 53 -117 -1173 85 85 -217 110 75 -1173 -1173 -1173 -47 175 -1173 -148 147 -6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 34 E= 3.2e-002 0.088235 0.764706 0.147059 0.000000 0.823529 0.000000 0.000000 0.176471 0.000000 0.000000 1.000000 0.000000 0.029412 0.235294 0.382353 0.352941 0.000000 0.500000 0.000000 0.500000 0.000000 0.323529 0.058824 0.617647 0.088235 0.500000 0.058824 0.352941 0.000000 0.088235 0.088235 0.823529 0.088235 0.529412 0.235294 0.147059 0.294118 0.205882 0.029412 0.470588 0.176471 0.117647 0.352941 0.352941 0.117647 0.000000 0.441176 0.441176 0.058824 0.529412 0.411765 0.000000 0.000000 0.000000 0.176471 0.823529 0.000000 0.088235 0.676471 0.235294 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 regular expression -------------------------------------------------------------------------------- CAG[GTC][CT][TC][CT]T[CG][TAC][GT][GT][CG]T[GT] -------------------------------------------------------------------------------- Time 58.54 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 10 sites = 34 llr = 267 E-value = 9.8e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A ::::4:2::2 pos.-specific C 8:4a::2546 probability G ::6::a5511 matrix T 2a::6:1:51 bits 2.0 * 1.8 * * * 1.6 * * * 1.4 * * * Relative 1.2 ** * * Entropy 1.0 ****** * (11.3 bits) 0.8 ****** * 0.6 ****** ** 0.4 ****** *** 0.2 ********** 0.0 ---------- Multilevel CTGCTGGGTC consensus C A ACCA sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chr7:111179334-111179883 422 7.86e-07 GCCCCAAGGT CTGCTGGGTC TGACGCAAGC chrX:150549751-150549952 114 4.88e-06 TATCTATGGT CTGCAGGCTC AGCCTTGAGT chr12:86800698-86801426 716 5.68e-06 CTGGCTGCTG CTCCTGGGTC ACT chr7:128300914-128301562 284 1.15e-05 TTCCTGAGGA CTGCTGACTC CATCACAAAC chr7:79358353-79359052 113 1.48e-05 AAAGCCAGTT CTGCTGCCTC TGATGACAGC chr1:151953533-151954167 64 2.00e-05 TTCTAGAAAA CTGCAGAGTC AGGCTGGCTG chr7:109114853-109115552 302 2.43e-05 GCGGCCAGGG CTGCTGCCCC AGCTGATAAG chr7:127091179-127091778 190 2.43e-05 GAGGCCAGCC CTCCAGGGCC TTTCAGATCG chr7:125472048-125472697 1 3.38e-05 . CTGCAGAGCC CTCTGAGCCA chrX:150564665-150565006 17 5.17e-05 TTCTAAAAGG CTCCTGACCC GGACAAAACA chr7:123365988-123366537 302 5.17e-05 CAGGGATGTA CTCCTGACCC ACAGCAGCTC chr10:117106045-11710679 399 5.17e-05 ACGTGGCAAG CTGCAGGGTT TTAACAGAGA chr11:78069377-78070213 779 5.94e-05 GACCCACAGC TTGCTGGGCC ATGCAGTACT chr7:126042071-126042642 4 7.31e-05 AGG TTGCAGGCTC TGAGATGGGA chr4:107008070-107008715 91 7.31e-05 TGTTCTTTTG CTCCTGGCTT GGAGAAGTAA chr11:78069758-78069976 5 8.19e-05 GCCC CTGCAGGCCT GATAAGCACG chr2:168050257-168050711 275 9.23e-05 TCCCGGAAGC CTCCAGCCCC GGCCCTGCGC chr8:36283382-36284221 599 1.02e-04 ATAAATTAAA TTGCTGAGTC AGAGTATGAA chr7:103865594-103866193 426 1.02e-04 GGCCTAGGGT TTGCTGAGTC AAAGTTCTCT chr8:80493297-80494643 963 1.35e-04 GAGTGGCACA CTGCAGCCCA CAACCATTTG chr7:66196514-66197213 114 1.35e-04 TTTTGGAAGG CTCCAGTGTC TGTGTTTCTG chr4:155788121-155788794 562 1.35e-04 GCTTGATTCA CTCCAGTGTC ATCCTGTGTG chr2:27343968-27344203 203 1.35e-04 CCGTGGGAAT CTGCAGCCCA CACTGCTACA chr7:127770413-127771012 233 1.49e-04 CATGAGGAAG CTGCTGGGGA AGGAAGCTGA chr6:88189623-88190022 72 2.02e-04 CCCGCTCCGG CTGCAGGGGA GGAGCGGTCG chr2:27389454-27390044 9 2.17e-04 TCTTGCCC CTCCTGCCCT GTGGAGCGGA chr9:45803277-45803954 490 2.33e-04 CATGGGGTGG CTGCTGTGCT TAAGTGTGCG chr7:79742313-79742862 360 2.33e-04 AACTTTCCCT CTCCTGGGGA AAGTTAGGAG chr7:125428498-125429097 438 3.00e-04 AGATAATCAA CTGCTTGCTC TGGCTTTAGT chr6:72279407-72280038 259 3.00e-04 CTTCCTTCGC CTCCTGAGTG CTGGGATATC chr8:122314938-122315193 207 3.74e-04 TCCCACCAGC TTCCTGCCTA GCTAGCAGCC chr5:84811415-84812023 199 4.14e-04 ACCACATCAT TTGCAGGGTG TCTTTAACTG chr7:120979850-120980499 436 4.83e-04 GGGGGTTTGG CTGTTGGGTA GACTAGGGCT chr1:86479043-86479715 20 5.56e-04 GCTTTACTAA ATGCTGGCCA GGATAATGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:111179334-111179883 7.9e-07 421_[+4]_118 chrX:150549751-150549952 4.9e-06 113_[+4]_78 chr12:86800698-86801426 5.7e-06 715_[+4]_3 chr7:128300914-128301562 1.2e-05 283_[+4]_355 chr7:79358353-79359052 1.5e-05 112_[+4]_577 chr1:151953533-151954167 2e-05 63_[+4]_561 chr7:109114853-109115552 2.4e-05 301_[+4]_388 chr7:127091179-127091778 2.4e-05 189_[+4]_400 chr7:125472048-125472697 3.4e-05 [+4]_639 chrX:150564665-150565006 5.2e-05 16_[+4]_315 chr7:123365988-123366537 5.2e-05 301_[+4]_238 chr10:117106045-11710679 5.2e-05 398_[+4]_346 chr11:78069377-78070213 5.9e-05 778_[+4]_48 chr7:126042071-126042642 7.3e-05 3_[+4]_558 chr4:107008070-107008715 7.3e-05 90_[+4]_545 chr11:78069758-78069976 8.2e-05 4_[+4]_204 chr2:168050257-168050711 9.2e-05 274_[+4]_170 chr8:36283382-36284221 0.0001 598_[+4]_231 chr7:103865594-103866193 0.0001 425_[+4]_164 chr8:80493297-80494643 0.00014 962_[+4]_374 chr7:66196514-66197213 0.00014 113_[+4]_576 chr4:155788121-155788794 0.00014 561_[+4]_102 chr2:27343968-27344203 0.00014 202_[+4]_23 chr7:127770413-127771012 0.00015 232_[+4]_357 chr6:88189623-88190022 0.0002 71_[+4]_318 chr2:27389454-27390044 0.00022 8_[+4]_572 chr9:45803277-45803954 0.00023 489_[+4]_178 chr7:79742313-79742862 0.00023 359_[+4]_180 chr7:125428498-125429097 0.0003 437_[+4]_152 chr6:72279407-72280038 0.0003 258_[+4]_363 chr8:122314938-122315193 0.00037 206_[+4]_39 chr5:84811415-84812023 0.00041 198_[+4]_400 chr7:120979850-120980499 0.00048 435_[+4]_204 chr1:86479043-86479715 0.00056 19_[+4]_643 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=10 seqs=34 chr7:111179334-111179883 ( 422) CTGCTGGGTC 1 chrX:150549751-150549952 ( 114) CTGCAGGCTC 1 chr12:86800698-86801426 ( 716) CTCCTGGGTC 1 chr7:128300914-128301562 ( 284) CTGCTGACTC 1 chr7:79358353-79359052 ( 113) CTGCTGCCTC 1 chr1:151953533-151954167 ( 64) CTGCAGAGTC 1 chr7:109114853-109115552 ( 302) CTGCTGCCCC 1 chr7:127091179-127091778 ( 190) CTCCAGGGCC 1 chr7:125472048-125472697 ( 1) CTGCAGAGCC 1 chrX:150564665-150565006 ( 17) CTCCTGACCC 1 chr7:123365988-123366537 ( 302) CTCCTGACCC 1 chr10:117106045-11710679 ( 399) CTGCAGGGTT 1 chr11:78069377-78070213 ( 779) TTGCTGGGCC 1 chr7:126042071-126042642 ( 4) TTGCAGGCTC 1 chr4:107008070-107008715 ( 91) CTCCTGGCTT 1 chr11:78069758-78069976 ( 5) CTGCAGGCCT 1 chr2:168050257-168050711 ( 275) CTCCAGCCCC 1 chr8:36283382-36284221 ( 599) TTGCTGAGTC 1 chr7:103865594-103866193 ( 426) TTGCTGAGTC 1 chr8:80493297-80494643 ( 963) CTGCAGCCCA 1 chr7:66196514-66197213 ( 114) CTCCAGTGTC 1 chr4:155788121-155788794 ( 562) CTCCAGTGTC 1 chr2:27343968-27344203 ( 203) CTGCAGCCCA 1 chr7:127770413-127771012 ( 233) CTGCTGGGGA 1 chr6:88189623-88190022 ( 72) CTGCAGGGGA 1 chr2:27389454-27390044 ( 9) CTCCTGCCCT 1 chr9:45803277-45803954 ( 490) CTGCTGTGCT 1 chr7:79742313-79742862 ( 360) CTCCTGGGGA 1 chr7:125428498-125429097 ( 438) CTGCTTGCTC 1 chr6:72279407-72280038 ( 259) CTCCTGAGTG 1 chr8:122314938-122315193 ( 207) TTCCTGCCTA 1 chr5:84811415-84812023 ( 199) TTGCAGGGTG 1 chr7:120979850-120980499 ( 436) CTGTTGGGTA 1 chr1:86479043-86479715 ( 20) ATGCTGGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 20087 bayes= 9.27372 E= 9.8e-001 -317 169 -1173 -47 -1173 -1173 -1173 203 -1173 52 141 -1173 -1173 198 -1173 -305 64 -1173 -1173 127 -1173 -1173 199 -305 -17 -26 95 -147 -1173 93 112 -1173 -1173 63 -147 111 -17 118 -205 -73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 34 E= 9.8e-001 0.029412 0.794118 0.000000 0.176471 0.000000 0.000000 0.000000 1.000000 0.000000 0.352941 0.647059 0.000000 0.000000 0.970588 0.000000 0.029412 0.411765 0.000000 0.000000 0.588235 0.000000 0.000000 0.970588 0.029412 0.235294 0.205882 0.470588 0.088235 0.000000 0.470588 0.529412 0.000000 0.000000 0.382353 0.088235 0.529412 0.235294 0.558824 0.058824 0.147059 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 regular expression -------------------------------------------------------------------------------- CT[GC]C[TA]G[GAC][GC][TC][CA] -------------------------------------------------------------------------------- Time 76.38 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 24 sites = 21 llr = 261 E-value = 5.0e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A 9728776519a8447532a7:866 pos.-specific C :121:1:131::1:1:23:::121 probability G 123111:24::253:243:18::2 matrix T ::2:1:421::::323:1:12111 bits 2.0 1.8 * 1.6 * * 1.4 * ** * Relative 1.2 * *** * Entropy 1.0 * * * *** * ** (17.9 bits) 0.8 ** ** * *** * ** 0.6 ** **** **** ** **** 0.4 ** **** ******** ****** 0.2 ** ************** ****** 0.0 ------------------------ Multilevel AAGAAAAAGAAAGAAAGCAAGAAA consensus GA T C GAG TAG C sequence C T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ chr12:86800698-86801426 74 5.04e-13 AAAGGAAAGA AAGAAAAAGAAAGAAAGAAAGAAA AAAAAAAAAC chr7:109114853-109115552 616 6.49e-09 TTGGCAAAAA AAAAAAAAAAAAAAAAGCAAGCAG AAGCACTTAG chr7:79742313-79742862 197 8.43e-08 CGCAGACTGG ACCAAAATGAAGATAAAGAAGATA AATCTGTCTT chr8:80493297-80494643 1275 1.32e-07 TTACTAAGAA AACAACAACAAAAACAACAATAAC CACAAAAACC chr7:126042071-126042642 130 1.64e-07 ACTGGGTCTG AAGATGAAGAAGGGAAGTAAGAAT CCAAAGATCG chr4:155788121-155788794 218 1.64e-07 TCATTCATTT AAAAAAATGAAAGGAAAGAAGTTT TGAATGTGAA chr11:78069377-78070213 702 2.03e-07 GGAGGGTTAC AAGAAATGAAAGGGAGGCAAGAGA TGACATGGCC chr6:72279407-72280038 433 6.66e-07 TTCCATTTTC AATAATTACAAACATTAAAAGACA TCACACATGG chr10:117106045-11710679 591 7.30e-07 AAGATGTAAA AATAAATCCAAAATATCAAAAACA TAATCAGCAG chr8:36283382-36284221 687 8.01e-07 TATGCTTAAA AATATATTTAAAGTATAAATGAAA AATTAATTAG chr7:79358353-79359052 581 8.01e-07 ACAGAAATGC ACAAAATAGCAACTAAGGAGGAAG AATGGGGGGA chr1:151953533-151954167 494 8.01e-07 ACTCCTCACC AGGGAAAGGAAGAGATGGAAGATC CAGTTGCTGG chr7:125428498-125429097 28 8.76e-07 ATGTTGTCAT AGCAACTCAAAAGTAACTAATAAA ATCCCCGTGG chr2:27389454-27390044 487 9.59e-07 TACTTACACA AAAGAAAACCAAGGCAGTAAGTAA GCTAAGGACT chr1:86479043-86479715 548 1.05e-06 GGTTATTCTT GAGAGGAACAAGAAAACCATGAAA TCCTGGGGTG chr7:127091179-127091778 349 1.61e-06 CAGAGATGTG GACAAATACCAACAAGGGAAGCAG ACAGGCCAGT chr7:111179334-111179883 176 3.58e-06 TTTAAGATTC AAGGGAAATAAAAATGGGAGTAAA CTCTGATAAG chr7:120979850-120980499 223 3.58e-06 CAGCTATGAA AGCCTCTGGAAAGTAGAGAAGAAG TTCCAAATGG chr7:128300914-128301562 410 5.17e-06 TGTGTTTCCT GGAAGAATGAAAAATTCCAAGCCA GTTTCTGTGA chr7:66196514-66197213 333 6.39e-06 GTGAGAGAGG AATAAAACCAAAGGTTCCACTACC CAGAGGCCCC chr8:122314938-122315193 17 1.99e-05 TAGACACTGT AGGCAGTGGACAGACAACAGGACA TCCAGTGGGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:86800698-86801426 5e-13 73_[+5]_631 chr7:109114853-109115552 6.5e-09 615_[+5]_60 chr7:79742313-79742862 8.4e-08 196_[+5]_329 chr8:80493297-80494643 1.3e-07 1274_[+5]_48 chr7:126042071-126042642 1.6e-07 129_[+5]_418 chr4:155788121-155788794 1.6e-07 217_[+5]_432 chr11:78069377-78070213 2e-07 701_[+5]_111 chr6:72279407-72280038 6.7e-07 432_[+5]_175 chr10:117106045-11710679 7.3e-07 590_[+5]_140 chr8:36283382-36284221 8e-07 686_[+5]_129 chr7:79358353-79359052 8e-07 580_[+5]_95 chr1:151953533-151954167 8e-07 493_[+5]_117 chr7:125428498-125429097 8.8e-07 27_[+5]_548 chr2:27389454-27390044 9.6e-07 486_[+5]_80 chr1:86479043-86479715 1e-06 547_[+5]_101 chr7:127091179-127091778 1.6e-06 348_[+5]_227 chr7:111179334-111179883 3.6e-06 175_[+5]_350 chr7:120979850-120980499 3.6e-06 222_[+5]_403 chr7:128300914-128301562 5.2e-06 409_[+5]_215 chr7:66196514-66197213 6.4e-06 332_[+5]_343 chr8:122314938-122315193 2e-05 16_[+5]_215 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=24 seqs=21 chr12:86800698-86801426 ( 74) AAGAAAAAGAAAGAAAGAAAGAAA 1 chr7:109114853-109115552 ( 616) AAAAAAAAAAAAAAAAGCAAGCAG 1 chr7:79742313-79742862 ( 197) ACCAAAATGAAGATAAAGAAGATA 1 chr8:80493297-80494643 ( 1275) AACAACAACAAAAACAACAATAAC 1 chr7:126042071-126042642 ( 130) AAGATGAAGAAGGGAAGTAAGAAT 1 chr4:155788121-155788794 ( 218) AAAAAAATGAAAGGAAAGAAGTTT 1 chr11:78069377-78070213 ( 702) AAGAAATGAAAGGGAGGCAAGAGA 1 chr6:72279407-72280038 ( 433) AATAATTACAAACATTAAAAGACA 1 chr10:117106045-11710679 ( 591) AATAAATCCAAAATATCAAAAACA 1 chr8:36283382-36284221 ( 687) AATATATTTAAAGTATAAATGAAA 1 chr7:79358353-79359052 ( 581) ACAAAATAGCAACTAAGGAGGAAG 1 chr1:151953533-151954167 ( 494) AGGGAAAGGAAGAGATGGAAGATC 1 chr7:125428498-125429097 ( 28) AGCAACTCAAAAGTAACTAATAAA 1 chr2:27389454-27390044 ( 487) AAAGAAAACCAAGGCAGTAAGTAA 1 chr1:86479043-86479715 ( 548) GAGAGGAACAAGAAAACCATGAAA 1 chr7:127091179-127091778 ( 349) GACAAATACCAACAAGGGAAGCAG 1 chr7:111179334-111179883 ( 176) AAGGGAAATAAAAATGGGAGTAAA 1 chr7:120979850-120980499 ( 223) AGCCTCTGGAAAGTAGAGAAGAAG 1 chr7:128300914-128301562 ( 410) GGAAGAATGAAAAATTCCAAGCCA 1 chr7:66196514-66197213 ( 333) AATAAAACCAAAGGTTCCACTACC 1 chr8:122314938-122315193 ( 17) AGGCAGTGGACAGACAACAGGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 19611 bayes= 10.1707 E= 5.0e+000 170 -1104 -77 -1104 133 -137 -4 -1104 -15 -5 45 -36 153 -137 -77 -1104 143 -1104 -77 -78 133 -79 -77 -236 111 -1104 -1104 81 85 -79 -36 -36 -89 43 81 -136 170 -79 -1104 -1104 185 -237 -1104 -1104 153 -1104 -4 -1104 53 -79 96 -1104 70 -1104 23 22 133 -79 -1104 -36 98 -1104 -36 22 33 -5 81 -1104 -47 43 45 -78 192 -1104 -1104 -1104 143 -237 -77 -136 -247 -1104 164 -36 153 -79 -1104 -136 111 -5 -236 -78 111 -79 -36 -136 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 21 E= 5.0e+000 0.857143 0.000000 0.142857 0.000000 0.666667 0.095238 0.238095 0.000000 0.238095 0.238095 0.333333 0.190476 0.761905 0.095238 0.142857 0.000000 0.714286 0.000000 0.142857 0.142857 0.666667 0.142857 0.142857 0.047619 0.571429 0.000000 0.000000 0.428571 0.476190 0.142857 0.190476 0.190476 0.142857 0.333333 0.428571 0.095238 0.857143 0.142857 0.000000 0.000000 0.952381 0.047619 0.000000 0.000000 0.761905 0.000000 0.238095 0.000000 0.380952 0.142857 0.476190 0.000000 0.428571 0.000000 0.285714 0.285714 0.666667 0.142857 0.000000 0.190476 0.523810 0.000000 0.190476 0.285714 0.333333 0.238095 0.428571 0.000000 0.190476 0.333333 0.333333 0.142857 1.000000 0.000000 0.000000 0.000000 0.714286 0.047619 0.142857 0.095238 0.047619 0.000000 0.761905 0.190476 0.761905 0.142857 0.000000 0.095238 0.571429 0.238095 0.047619 0.142857 0.571429 0.142857 0.190476 0.095238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 regular expression -------------------------------------------------------------------------------- A[AG][GAC]AAA[AT]A[GC]AA[AG][GA][AGT]A[AT][GAC][CG]AAGA[AC]A -------------------------------------------------------------------------------- Time 93.94 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 10 sites = 22 llr = 206 E-value = 3.5e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A :519:5:7:5 pos.-specific C a59:75a:85 probability G ::::3:::2: matrix T :::1:::3:: bits 2.0 * * 1.8 * * 1.6 * * * 1.4 * ** * Relative 1.2 * *** * * Entropy 1.0 ********** (13.5 bits) 0.8 ********** 0.6 ********** 0.4 ********** 0.2 ********** 0.0 ---------- Multilevel CCCACACACC consensus A GC TGA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------- chr7:125428498-125429097 222 4.26e-06 GGTCACCTTA CCCACACACA ACCTGACAGG chr7:66196514-66197213 582 4.26e-06 GGGCAGGCAC CCCACCCACC ATTCAACCAC chr7:127091179-127091778 217 4.26e-06 TCGCTGCGCG CACACACACC CTCCCGGCAT chr6:72279407-72280038 152 7.55e-06 CACATATGCG CACACACACA CTATTCTGGT chr4:155788121-155788794 33 7.55e-06 CACTCGGAAA CACACACACA CACAATTTAT chr11:78069377-78070213 508 7.55e-06 TGCAGAAGCC CCCACCCACA GTTAGAGGCC chr11:78069758-78069976 127 7.55e-06 TGCAGAAGCC CCCACCCACA GTTAGAGGCC chr8:80493297-80494643 72 1.26e-05 CTCAGCGCTA CACACACTCC CTTTATGCTT chr7:126042071-126042642 107 1.26e-05 ACATTAGGTC CCCACCCTCC ATCACTGGGT chr12:86800698-86801426 336 1.67e-05 ACAAGGAGAT CACACACTCA CAGATCAGCA chr7:128300914-128301562 347 2.83e-05 CATATCTGAC CCCACACAGA GTCTGTCTAA chr7:125472048-125472697 226 2.83e-05 GTCGAAAAAG CACACACAGC CTGTTTCAAT chr7:123365988-123366537 48 2.94e-05 CAGTTGCCAA CACAGCCACA GACCACATCT chr7:103865594-103866193 260 3.77e-05 TTCTCAGAGT CACAGACTCC ACCCTGAGCT chr7:79358353-79359052 469 3.77e-05 CCCAGCCGCC CACAGACTCC CAGCACACCA chr2:27389454-27390044 220 4.16e-05 TGTCCAGTGG CCCAGCCTCA GGCTACACCC chrX:150564665-150565006 134 4.46e-05 AGTAACAGTC CCCACCCTGC TCCTGCCTAT chr6:88189623-88190022 41 5.37e-05 CGCGCACCGG CCCAGCCAGC CGCGGGGGTC chr8:122314938-122315193 194 5.88e-05 TCCTTCTCCG CCCTCCCACC AGCTTCCTGC chr8:36283382-36284221 540 6.85e-05 ACCGAGGCTT CCAACACACA GTCCTTAACA chr9:45803277-45803954 638 8.78e-05 TACTCACTGC CCCTGACACC CCCAGTTCTT chr7:109114853-109115552 30 1.37e-04 AAAGTCAGGC CAAACCCAGC AGGCCACGAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:125428498-125429097 4.3e-06 221_[+6]_368 chr7:66196514-66197213 4.3e-06 581_[+6]_108 chr7:127091179-127091778 4.3e-06 216_[+6]_373 chr6:72279407-72280038 7.5e-06 151_[+6]_470 chr4:155788121-155788794 7.5e-06 32_[+6]_631 chr11:78069377-78070213 7.5e-06 507_[+6]_319 chr11:78069758-78069976 7.5e-06 126_[+6]_82 chr8:80493297-80494643 1.3e-05 71_[+6]_1265 chr7:126042071-126042642 1.3e-05 106_[+6]_455 chr12:86800698-86801426 1.7e-05 335_[+6]_383 chr7:128300914-128301562 2.8e-05 346_[+6]_292 chr7:125472048-125472697 2.8e-05 225_[+6]_414 chr7:123365988-123366537 2.9e-05 47_[+6]_492 chr7:103865594-103866193 3.8e-05 259_[+6]_330 chr7:79358353-79359052 3.8e-05 468_[+6]_221 chr2:27389454-27390044 4.2e-05 219_[+6]_361 chrX:150564665-150565006 4.5e-05 133_[+6]_198 chr6:88189623-88190022 5.4e-05 40_[+6]_349 chr8:122314938-122315193 5.9e-05 193_[+6]_52 chr8:36283382-36284221 6.9e-05 539_[+6]_290 chr9:45803277-45803954 8.8e-05 637_[+6]_30 chr7:109114853-109115552 0.00014 29_[+6]_660 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=10 seqs=22 chr7:125428498-125429097 ( 222) CCCACACACA 1 chr7:66196514-66197213 ( 582) CCCACCCACC 1 chr7:127091179-127091778 ( 217) CACACACACC 1 chr6:72279407-72280038 ( 152) CACACACACA 1 chr4:155788121-155788794 ( 33) CACACACACA 1 chr11:78069377-78070213 ( 508) CCCACCCACA 1 chr11:78069758-78069976 ( 127) CCCACCCACA 1 chr8:80493297-80494643 ( 72) CACACACTCC 1 chr7:126042071-126042642 ( 107) CCCACCCTCC 1 chr12:86800698-86801426 ( 336) CACACACTCA 1 chr7:128300914-128301562 ( 347) CCCACACAGA 1 chr7:125472048-125472697 ( 226) CACACACAGC 1 chr7:123365988-123366537 ( 48) CACAGCCACA 1 chr7:103865594-103866193 ( 260) CACAGACTCC 1 chr7:79358353-79359052 ( 469) CACAGACTCC 1 chr2:27389454-27390044 ( 220) CCCAGCCTCA 1 chrX:150564665-150565006 ( 134) CCCACCCTGC 1 chr6:88189623-88190022 ( 41) CCCAGCCAGC 1 chr8:122314938-122315193 ( 194) CCCTCCCACC 1 chr8:36283382-36284221 ( 540) CCAACACACA 1 chr9:45803277-45803954 ( 638) CCCTGACACC 1 chr7:109114853-109115552 ( 30) CAAACCCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 10 n= 20087 bayes= 10.8602 E= 3.5e+002 -1110 202 -1110 -1110 78 114 -1110 -1110 -154 188 -1110 -1110 178 -1110 -1110 -143 -1110 156 16 -1110 104 88 -1110 -1110 -1110 202 -1110 -1110 137 -1110 -1110 38 -1110 165 -10 -1110 78 114 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 10 nsites= 22 E= 3.5e+002 0.000000 1.000000 0.000000 0.000000 0.454545 0.545455 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.909091 0.000000 0.000000 0.090909 0.000000 0.727273 0.272727 0.000000 0.545455 0.454545 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.681818 0.000000 0.000000 0.318182 0.000000 0.772727 0.227273 0.000000 0.454545 0.545455 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 regular expression -------------------------------------------------------------------------------- C[CA]CA[CG][AC]C[AT][CG][CA] -------------------------------------------------------------------------------- Time 111.32 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 24 sites = 5 llr = 115 E-value = 7.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A :::::4:4:::::6:4:::::2a: pos.-specific C :2a::46:48a::22:2::428:2 probability G 86:4a2:::2::a:::8:a6:::8 matrix T 22:6::466::a:286:a::8::: bits 2.0 * * *** ** 1.8 * * *** ** * 1.6 * * *** ** * 1.4 * * *** ** * Relative 1.2 * * * **** * *** **** Entropy 1.0 * *** ******* ********** (33.2 bits) 0.8 * *** ******* ********** 0.6 ***** ****************** 0.4 ************************ 0.2 ************************ 0.0 ------------------------ Multilevel GGCTGACTTCCTGATTGTGGTCAG consensus TC G CTACG CCAC CCA C sequence T G T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ chr11:78069377-78070213 411 5.64e-13 GCACGTGCTA GGCTGCTACCCTGATAGTGGTCAG CGTATCGGGG chr11:78069758-78069976 30 5.64e-13 GCACGTGCTA GGCTGCTACCCTGATAGTGGTCAG CGTATCGGGG chr9:45803277-45803954 248 9.94e-12 AGAAAGGACA GGCTGACTTCCTGATTGTGCTAAC TTGTGTGCTA chr8:80493297-80494643 43 5.50e-11 CTCCGCTGTG GTCGGGCTTCCTGCTTCTGCTCAG CGCTACACAC chr8:122314938-122315193 123 3.63e-10 CTCACCCCCT TCCGGACTTGCTGTCTGTGGCCAG GGCAGGCTAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:78069377-78070213 5.6e-13 410_[+7]_402 chr11:78069758-78069976 5.6e-13 29_[+7]_165 chr9:45803277-45803954 9.9e-12 247_[+7]_406 chr8:80493297-80494643 5.5e-11 42_[+7]_1280 chr8:122314938-122315193 3.6e-10 122_[+7]_109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=24 seqs=5 chr11:78069377-78070213 ( 411) GGCTGCTACCCTGATAGTGGTCAG 1 chr11:78069758-78069976 ( 30) GGCTGCTACCCTGATAGTGGTCAG 1 chr9:45803277-45803954 ( 248) GGCTGACTTCCTGATTGTGCTAAC 1 chr8:80493297-80494643 ( 43) GTCGGGCTTCCTGCTTCTGCTCAG 1 chr8:122314938-122315193 ( 123) TCCGGACTTGCTGTCTGTGGCCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 19611 bayes= 12.1887 E= 7.3e+002 -897 -897 171 -29 -897 -30 129 -29 -897 202 -897 -897 -897 -897 71 129 -897 -897 203 -897 60 70 -29 -897 -897 128 -897 71 60 -897 -897 129 -897 70 -897 129 -897 170 -29 -897 -897 202 -897 -897 -897 -897 -897 203 -897 -897 203 -897 118 -30 -897 -29 -897 -30 -897 171 60 -897 -897 129 -897 -30 171 -897 -897 -897 -897 203 -897 -897 203 -897 -897 70 129 -897 -897 -30 -897 171 -40 170 -897 -897 192 -897 -897 -897 -897 -30 171 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 5 E= 7.3e+002 0.000000 0.000000 0.800000 0.200000 0.000000 0.200000 0.600000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.400000 0.400000 0.200000 0.000000 0.000000 0.600000 0.000000 0.400000 0.400000 0.000000 0.000000 0.600000 0.000000 0.400000 0.000000 0.600000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.600000 0.200000 0.000000 0.200000 0.000000 0.200000 0.000000 0.800000 0.400000 0.000000 0.000000 0.600000 0.000000 0.200000 0.800000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 0.200000 0.000000 0.800000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 regular expression -------------------------------------------------------------------------------- [GT][GCT]C[TG]G[ACG][CT][TA][TC][CG]CTG[ACT][TC][TA][GC]TG[GC][TC][CA]A[GC] -------------------------------------------------------------------------------- Time 128.09 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 14 sites = 10 llr = 128 E-value = 4.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A 3:4:::2::::3:7 pos.-specific C :12a:31:::1::: probability G 794::774a886a3 matrix T ::::a::6:211:: bits 2.0 ** * * 1.8 ** * * 1.6 * ** * * 1.4 * ** * * Relative 1.2 * *** ** * Entropy 1.0 ** *** **** ** (18.5 bits) 0.8 ** ******** ** 0.6 ** *********** 0.4 ************** 0.2 ************** 0.0 -------------- Multilevel GGACTGGTGGGGGA consensus A G CAG T A G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------- chr12:86800698-86801426 626 2.94e-09 AGTCAGCAGA GGGCTGGTGGGGGA GGGGCAGCTC chr1:151953533-151954167 311 3.37e-08 GGAGAAGCCG AGGCTGGTGGGGGA ATGGTTACAG chr7:79358353-79359052 409 9.96e-08 TCAGGAGAAA GGCCTCGTGGGGGA GCCCGTTAAC chr7:127770413-127771012 38 1.31e-07 CAGCAGATGC AGACTGGTGGGGGG AAAGTCTGAA chr7:127091179-127091778 329 5.76e-07 TGCAAATGGG GGACTGGTGGCAGA GATGTGGACA chr7:125428498-125429097 93 1.40e-06 TGAGCTAGAT GGGCTGAGGGTGGA GCCCTGATGC chr7:66196514-66197213 621 1.85e-06 CGAACAGACA GGGCTCAGGGGAGG AAGCCTGCTA chr11:78069377-78070213 636 1.98e-06 GCAGTGGGCA GCCCTGGTGTGGGA AGGAGCTTGG chr4:107008070-107008715 322 2.28e-06 GATAAAGGCA GGACTGGGGTGTGG CTGTAACTGG chr6:88189623-88190022 168 3.52e-06 GCTGTATAAT AGACTCCGGGGAGA TAGGAAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr12:86800698-86801426 2.9e-09 625_[+8]_89 chr1:151953533-151954167 3.4e-08 310_[+8]_310 chr7:79358353-79359052 1e-07 408_[+8]_277 chr7:127770413-127771012 1.3e-07 37_[+8]_548 chr7:127091179-127091778 5.8e-07 328_[+8]_257 chr7:125428498-125429097 1.4e-06 92_[+8]_493 chr7:66196514-66197213 1.8e-06 620_[+8]_65 chr11:78069377-78070213 2e-06 635_[+8]_187 chr4:107008070-107008715 2.3e-06 321_[+8]_310 chr6:88189623-88190022 3.5e-06 167_[+8]_218 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=14 seqs=10 chr12:86800698-86801426 ( 626) GGGCTGGTGGGGGA 1 chr1:151953533-151954167 ( 311) AGGCTGGTGGGGGA 1 chr7:79358353-79359052 ( 409) GGCCTCGTGGGGGA 1 chr7:127770413-127771012 ( 38) AGACTGGTGGGGGG 1 chr7:127091179-127091778 ( 329) GGACTGGTGGCAGA 1 chr7:125428498-125429097 ( 93) GGGCTGAGGGTGGA 1 chr7:66196514-66197213 ( 621) GGGCTCAGGGGAGG 1 chr11:78069377-78070213 ( 636) GCCCTGGTGTGGGA 1 chr4:107008070-107008715 ( 322) GGACTGGGGTGTGG 1 chr6:88189623-88190022 ( 168) AGACTCCGGGGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 14 n= 19951 bayes= 11.2132 E= 4.6e+004 18 -997 152 -997 -997 -130 188 -997 60 -30 71 -997 -997 202 -997 -997 -997 -997 -997 203 -997 28 152 -997 -40 -130 152 -997 -997 -997 71 129 -997 -997 203 -997 -997 -997 171 -29 -997 -130 171 -129 18 -997 130 -129 -997 -997 203 -997 140 -997 30 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 14 nsites= 10 E= 4.6e+004 0.300000 0.000000 0.700000 0.000000 0.000000 0.100000 0.900000 0.000000 0.400000 0.200000 0.400000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.300000 0.700000 0.000000 0.200000 0.100000 0.700000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.800000 0.200000 0.000000 0.100000 0.800000 0.100000 0.300000 0.000000 0.600000 0.100000 0.000000 0.000000 1.000000 0.000000 0.700000 0.000000 0.300000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 regular expression -------------------------------------------------------------------------------- [GA]G[AGC]CT[GC][GA][TG]G[GT]G[GA]G[AG] -------------------------------------------------------------------------------- Time 144.64 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 24 sites = 5 llr = 112 E-value = 5.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A ::2::2::8:2:::62:aa:824: pos.-specific C ::8aa2a2:4448a:::::428:8 probability G :8:::::::4:22:28a::6:::2 matrix T a2:::6:82244::2:::::::6: bits 2.0 * ** * * * 1.8 * ** * * *** 1.6 * ** * * *** 1.4 * ** * * *** Relative 1.2 ***** *** ** **** ** * Entropy 1.0 ***** *** ** ********* (32.3 bits) 0.8 ***** *** ** ********* 0.6 ********* ************ 0.4 ************************ 0.2 ************************ 0.0 ------------------------ Multilevel TGCCCTCTACCCCCAGGAAGACTC consensus TA A CTGTTG GA CCAAG sequence C TAG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------ chr11:78069377-78070213 563 5.53e-14 GAGATATCTC TGCCCTCTACTCCCAGGAACACTC ACTTCTCTCA chr11:78069758-78069976 182 5.53e-14 GAGATATCTC TGCCCTCTACTCCCAGGAACACTC ACTTCTCTCA chr7:126042071-126042642 497 1.10e-10 TTGACATTAG TGCCCCCTAGAGGCAGGAAGCCTC TCTGTAACCA chr7:111179334-111179883 110 3.53e-10 TAGTGTTTCT TTCCCACCAGCTCCTGGAAGACAG AGATTACATG chr7:79742313-79742862 525 6.29e-10 TACCGGGCTG TGACCTCTTTCTCCGAGAAGAAAC C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:78069377-78070213 5.5e-14 562_[+9]_250 chr11:78069758-78069976 5.5e-14 181_[+9]_13 chr7:126042071-126042642 1.1e-10 496_[+9]_51 chr7:111179334-111179883 3.5e-10 109_[+9]_416 chr7:79742313-79742862 6.3e-10 524_[+9]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=24 seqs=5 chr11:78069377-78070213 ( 563) TGCCCTCTACTCCCAGGAACACTC 1 chr11:78069758-78069976 ( 182) TGCCCTCTACTCCCAGGAACACTC 1 chr7:126042071-126042642 ( 497) TGCCCCCTAGAGGCAGGAAGCCTC 1 chr7:111179334-111179883 ( 110) TTCCCACCAGCTCCTGGAAGACAG 1 chr7:79742313-79742862 ( 525) TGACCTCTTTCTCCGAGAAGAAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 24 n= 19611 bayes= 10.4718 E= 5.2e+004 -897 -897 -897 203 -897 -897 171 -29 -40 170 -897 -897 -897 202 -897 -897 -897 202 -897 -897 -40 -30 -897 129 -897 202 -897 -897 -897 -30 -897 171 159 -897 -897 -29 -897 70 71 -29 -40 70 -897 71 -897 70 -29 71 -897 170 -29 -897 -897 202 -897 -897 118 -897 -29 -29 -40 -897 171 -897 -897 -897 203 -897 192 -897 -897 -897 192 -897 -897 -897 -897 70 129 -897 159 -30 -897 -897 -40 170 -897 -897 60 -897 -897 129 -897 170 -29 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 24 nsites= 5 E= 5.2e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.800000 0.200000 0.200000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.200000 0.000000 0.600000 0.000000 1.000000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.800000 0.000000 0.000000 0.200000 0.000000 0.400000 0.400000 0.200000 0.200000 0.400000 0.000000 0.400000 0.000000 0.400000 0.200000 0.400000 0.000000 0.800000 0.200000 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.200000 0.200000 0.200000 0.000000 0.800000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.400000 0.600000 0.000000 0.800000 0.200000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.400000 0.000000 0.000000 0.600000 0.000000 0.800000 0.200000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 regular expression -------------------------------------------------------------------------------- T[GT][CA]CC[TAC]C[TC][AT][CGT][CTA][CTG][CG]C[AGT][GA]GAA[GC][AC][CA][TA][CG] -------------------------------------------------------------------------------- Time 161.47 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 25 sites = 2 llr = 70 E-value = 9.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A ::a::::::a::::a::::a::::: pos.-specific C ::::a::::::aaa:::::::a::: probability G a::::aaaa::::::aa:::::::a matrix T :a:a::::::a::::::aa:a:aa: bits 2.0 ** ****** **** **** ***** 1.8 ************************* 1.6 ************************* 1.4 ************************* Relative 1.2 ************************* Entropy 1.0 ************************* (50.3 bits) 0.8 ************************* 0.6 ************************* 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel GTATCGGGGATCCCAGGTTATCTTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- chr11:78069377-78070213 436 7.39e-16 AGTGGTCAGC GTATCGGGGATCCCAGGTTATCTTG CCCAGGCCCA chr11:78069758-78069976 55 7.39e-16 AGTGGTCAGC GTATCGGGGATCCCAGGTTATCTTG CCCAGGCCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:78069377-78070213 7.4e-16 435_[+10]_376 chr11:78069758-78069976 7.4e-16 54_[+10]_139 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=25 seqs=2 chr11:78069377-78070213 ( 436) GTATCGGGGATCCCAGGTTATCTTG 1 chr11:78069758-78069976 ( 55) GTATCGGGGATCCCAGGTTATCTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 19577 bayes= 13.2567 E= 9.2e+004 -765 -765 203 -765 -765 -765 -765 203 191 -765 -765 -765 -765 -765 -765 203 -765 201 -765 -765 -765 -765 203 -765 -765 -765 203 -765 -765 -765 203 -765 -765 -765 203 -765 191 -765 -765 -765 -765 -765 -765 203 -765 201 -765 -765 -765 201 -765 -765 -765 201 -765 -765 191 -765 -765 -765 -765 -765 203 -765 -765 -765 203 -765 -765 -765 -765 203 -765 -765 -765 203 191 -765 -765 -765 -765 -765 -765 203 -765 201 -765 -765 -765 -765 -765 203 -765 -765 -765 203 -765 -765 203 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 2 E= 9.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 regular expression -------------------------------------------------------------------------------- GTATCGGGGATCCCAGGTTATCTTG -------------------------------------------------------------------------------- Time 178.17 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:117106045-11710679 6.36e-04 3_[+3(1.04e-05)]_380_[+4(5.17e-05)]_52_[+1(3.65e-05)]_109_[+5(7.30e-07)]_140 chr11:78069758-78069976 3.33e-40 4_[+4(8.19e-05)]_15_[+7(5.64e-13)]_1_[+10(7.39e-16)]_12_[+1(5.85e-07)]_14_[+6(7.55e-06)]_3_[+2(2.86e-06)]_3_[+3(6.07e-09)]_13_[+9(5.53e-14)]_13 chr11:78069377-78070213 1.04e-40 385_[+4(8.19e-05)]_15_[+7(5.64e-13)]_1_[+10(7.39e-16)]_12_[+1(5.85e-07)]_14_[+6(7.55e-06)]_3_[+2(2.86e-06)]_3_[+3(6.07e-09)]_13_[+9(5.53e-14)]_15_[+8(2.16e-05)]_20_[+8(1.98e-06)]_52_[+5(2.03e-07)]_53_[+4(5.94e-05)]_48 chr12:86800698-86801426 9.93e-15 3_[+1(8.67e-05)]_49_[+5(5.04e-13)]_156_[+2(2.23e-05)]_71_[+6(1.67e-05)]_83_[+6(2.52e-05)]_187_[+8(2.94e-09)]_76_[+4(5.68e-06)]_3 chr1:151953533-151954167 8.70e-10 22_[+9(2.05e-05)]_17_[+4(2.00e-05)]_237_[+8(3.37e-08)]_19_[+1(6.73e-06)]_7_[+2(7.53e-05)]_68_[+2(3.59e-05)]_32_[+5(8.01e-07)]_13_[+3(3.08e-05)]_89 chr1:86479043-86479715 4.68e-05 181_[+1(1.29e-05)]_315_[+2(2.38e-06)]_19_[+5(1.05e-06)]_72_[+3(7.80e-05)]_14 chr2:27343968-27344203 1.71e-04 66_[+1(2.02e-05)]_30_[+8(8.85e-05)]_77_[+6(3.86e-05)]_17 chr2:168050257-168050711 2.73e-03 127_[+1(1.16e-06)]_69_[+3(8.49e-05)]_42_[+4(9.23e-05)]_170 chr2:27389454-27390044 4.76e-07 168_[+7(7.79e-05)]_27_[+6(4.16e-05)]_6_[+1(1.94e-07)]_35_[+1(4.65e-05)]_58_[+1(6.38e-05)]_95_[+5(9.59e-07)]_80 chr4:107008070-107008715 1.68e-05 90_[+4(7.31e-05)]_173_[+4(4.40e-05)]_38_[+8(2.28e-06)]_182_[+1(9.82e-06)]_3_[+1(8.04e-05)]_25_[+2(2.38e-06)]_47 chr4:155788121-155788794 4.87e-07 32_[+6(7.55e-06)]_175_[+5(1.64e-07)]_143_[+2(2.71e-05)]_97_[+1(2.61e-05)]_95_[+3(3.71e-06)]_50 chr5:84811415-84812023 6.10e-03 97_[+1(8.14e-06)]_285_[+2(5.33e-05)]_194 chr6:88189623-88190022 5.69e-05 40_[+6(5.37e-05)]_59_[+3(7.80e-05)]_43_[+8(3.52e-06)]_76_[+3(7.20e-06)]_44_[+1(3.36e-05)]_62 chr6:72279407-72280038 4.06e-06 127_[+6(4.26e-06)]_14_[+6(7.55e-06)]_271_[+5(6.66e-07)]_25_[+2(9.17e-05)]_139 chr7:79358353-79359052 4.12e-13 112_[+4(1.48e-05)]_6_[+3(1.53e-06)]_27_[+2(3.19e-05)]_227_[+8(9.96e-08)]_18_[+1(1.80e-06)]_7_[+6(3.77e-05)]_102_[+5(8.01e-07)]_53_[+1(1.71e-07)]_21 chr7:120979850-120980499 9.62e-03 222_[+5(3.58e-06)]_329_[+3(3.41e-05)]_59 chr7:127770413-127771012 6.79e-06 37_[+8(1.31e-07)]_135_[+2(6.39e-05)]_179_[+7(9.12e-05)]_3_[+1(3.37e-06)]_175 chr7:127091179-127091778 1.58e-11 26_[+3(1.04e-05)]_26_[+1(1.61e-06)]_70_[+7(8.20e-05)]_7_[+4(2.43e-05)]_17_[+6(4.26e-06)]_83_[+2(4.74e-05)]_8_[+8(5.76e-07)]_6_[+5(1.61e-06)]_227 chr7:126042071-126042642 9.12e-14 3_[+4(7.31e-05)]_93_[+6(1.26e-05)]_13_[+5(1.64e-07)]_343_[+9(1.10e-10)]_11_[+2(4.74e-05)]_2_[+1(8.83e-08)]_6 chr7:66196514-66197213 9.42e-09 182_[+3(2.42e-06)]_76_[+2(6.39e-05)]_48_[+5(6.39e-06)]_225_[+6(4.26e-06)]_29_[+8(1.85e-06)]_5_[+1(2.00e-06)]_39 chr7:125428498-125429097 1.13e-11 27_[+5(8.76e-07)]_41_[+8(1.40e-06)]_115_[+6(4.26e-06)]_50_[+2(2.71e-05)]_92_[+1(6.84e-11)]_194 chr7:79742313-79742862 8.91e-10 196_[+5(8.43e-08)]_213_[+3(4.89e-06)]_76_[+9(6.29e-10)]_1 chr7:109114853-109115552 1.07e-07 260_[+3(5.48e-05)]_26_[+4(2.43e-05)]_300_[+5(4.85e-09)]_18_[+1(2.22e-06)]_25 chr7:103865594-103866193 4.88e-04 194_[+1(9.34e-05)]_44_[+6(3.77e-05)]_124_[+3(7.17e-05)]_115_[+3(2.09e-06)]_61 chr7:125472048-125472697 1.31e-05 [+4(3.38e-05)]_8_[+3(6.00e-05)]_5_[+2(5.04e-06)]_176_[+6(2.83e-05)]_10_[+1(1.71e-07)]_383 chr7:128300914-128301562 1.38e-06 12_[+2(3.59e-05)]_27_[+1(8.95e-06)]_212_[+4(1.15e-05)]_53_[+6(2.83e-05)]_53_[+5(5.17e-06)]_91_[+3(1.53e-06)]_109 chr7:111179334-111179883 1.25e-12 109_[+9(3.53e-10)]_42_[+5(3.58e-06)]_35_[+1(1.29e-05)]_15_[+7(7.41e-05)]_48_[+2(5.04e-06)]_68_[+4(7.86e-07)]_32_[+9(1.59e-05)]_62 chr7:123365988-123366537 3.04e-05 47_[+6(2.94e-05)]_145_[+3(4.24e-06)]_84_[+4(5.17e-05)]_87_[+1(2.47e-06)]_130 chr8:36283382-36284221 3.70e-05 310_[+3(9.19e-06)]_214_[+6(6.85e-05)]_137_[+5(8.01e-07)]_129 chr8:80493297-80494643 8.38e-12 42_[+7(5.50e-11)]_5_[+6(1.26e-05)]_300_[+2(2.71e-05)]_71_[+4(8.19e-05)]_388_[+3(2.52e-05)]_312_[+3(1.64e-07)]_71_[+5(1.32e-07)]_48 chr8:122314938-122315193 7.14e-13 4_[+2(7.53e-05)]_1_[+5(1.99e-05)]_3_[+2(7.53e-05)]_44_[+1(2.84e-07)]_3_[+7(3.63e-10)]_2_[+3(7.20e-06)]_30_[+6(5.88e-05)]_52 chr9:45803277-45803954 1.38e-09 247_[+7(9.94e-12)]_195_[+2(3.59e-05)]_52_[+1(3.96e-05)]_10_[+7(1.64e-05)]_53_[+6(8.78e-05)]_2_[+3(2.42e-06)]_13 chrX:150564665-150565006 1.05e-04 16_[+4(5.17e-05)]_107_[+6(4.46e-05)]_40_[+1(3.96e-05)]_137 chrX:150549751-150549952 2.55e-05 39_[+1(6.11e-06)]_11_[+3(7.17e-05)]_27_[+4(4.88e-06)]_65_[+2(3.59e-05)]_2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because nmotifs = 10 reached. ******************************************************************************** CPU: pongo ********************************************************************************