module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/hg19/gencode/gencode_v16/gencode.v16.annotation.protein_coding.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/hg19/gencode/gencode_v16/gencode.v16.annotation.protein_coding.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/hg19/gencode/gencode_v16/gencode.v16.annotation.protein_coding.ORF.fa