module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Apicomplexa/Plasmodium_falciparum/Plasmodium_falciparum.ASM276v1.20.fixed.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Apicomplexa/Plasmodium_falciparum/Plasmodium_falciparum.ASM276v1.20.fixed.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Apicomplexa/Plasmodium_falciparum/Plasmodium_falciparum.ASM276v1.20.fixed.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/sacCer3/Saccharomyces_cerevisiae.SacCer_Apr2011.20.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/sacCer3/Saccharomyces_cerevisiae.SacCer_Apr2011.20.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/sacCer3/Saccharomyces_cerevisiae.SacCer_Apr2011.20.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Fungi/Schizosaccharomyces_pombe/Schizosaccharomyces_pombe.ASM294v2.20.fixed.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Fungi/Schizosaccharomyces_pombe/Schizosaccharomyces_pombe.ASM294v2.20.fixed.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Fungi/Schizosaccharomyces_pombe/Schizosaccharomyces_pombe.ASM294v2.20.fixed.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/Emihu1_best_genes.protein_coding.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/Emihu1_best_genes.protein_coding.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Haptophyta/Emiliania_huxleyi_CCMP1516_v1.0/Emihu1_best_genes.protein_coding.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Heterolobosea/Naegleria_gruberi_v1.0/Naegr1_best_models.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Heterolobosea/Naegleria_gruberi_v1.0/Naegr1_best_models.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Heterolobosea/Naegleria_gruberi_v1.0/Naegr1_best_models.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Mycetozoa/Dictyostelium_discoideum/Dictyostelium_discoideum.dictybase.01.20.fixed.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Mycetozoa/Dictyostelium_discoideum/Dictyostelium_discoideum.dictybase.01.20.fixed.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Mycetozoa/Dictyostelium_discoideum/Dictyostelium_discoideum.dictybase.01.20.fixed.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Oomycete/Phytophthora_infestans/Phytophthora_infestans.ASM14294v1.20.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Oomycete/Phytophthora_infestans/Phytophthora_infestans.ASM14294v1.20.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Oomycete/Phytophthora_infestans/Phytophthora_infestans.ASM14294v1.20.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Parabasalia/Trichomonas_vaginalis-ASM282v1/GCA_000002825.1_ASM282v1_genomic.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Parabasalia/Trichomonas_vaginalis-ASM282v1/GCA_000002825.1_ASM282v1_genomic.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Parabasalia/Trichomonas_vaginalis-ASM282v1/GCA_000002825.1_ASM282v1_genomic.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/GCA_000310025.1_ASM31002v1_genomic.fixed.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/GCA_000310025.1_ASM31002v1_genomic.fixed.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Phaeophyta/Ectocarpus_siliculosus_Ec_32-ASM31002v1/GCA_000310025.1_ASM31002v1_genomic.fixed.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Rhodophyta/Cyanidioschyzon_merolae/Cyanidioschyzon_merolae.ASM9120v1.19.fixed.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Rhodophyta/Cyanidioschyzon_merolae/Cyanidioschyzon_merolae.ASM9120v1.19.fixed.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Rhodophyta/Cyanidioschyzon_merolae/Cyanidioschyzon_merolae.ASM9120v1.19.fixed.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Apusozoa/Thecamonas_trahens_atcc_50062_1/thecamonas_trahens_atcc_50062_1_transcripts.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Apusozoa/Thecamonas_trahens_atcc_50062_1/thecamonas_trahens_atcc_50062_1_transcripts.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Apusozoa/Thecamonas_trahens_atcc_50062_1/thecamonas_trahens_atcc_50062_1_transcripts.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Archamoebae/Acanthamoeba_castellanii_str._Neff-v1/GCA_000313135.1_Acastellanii.strNEFF_v1_genomic.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Archamoebae/Acanthamoeba_castellanii_str._Neff-v1/GCA_000313135.1_Acastellanii.strNEFF_v1_genomic.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Archamoebae/Acanthamoeba_castellanii_str._Neff-v1/GCA_000313135.1_Acastellanii.strNEFF_v1_genomic.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Archamoebae/Entamoeba_histolytica/Entamoeba_histolytica.JCVI-ESG2-1.0.20.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Archamoebae/Entamoeba_histolytica/Entamoeba_histolytica.JCVI-ESG2-1.0.20.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Archamoebae/Entamoeba_histolytica/Entamoeba_histolytica.JCVI-ESG2-1.0.20.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Chlorarachniophyta/Bigelowiella_natans_CCMP2755_v1.0/Bigna1_all_genes.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Chlorarachniophyta/Bigelowiella_natans_CCMP2755_v1.0/Bigna1_all_genes.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Chlorarachniophyta/Bigelowiella_natans_CCMP2755_v1.0/Bigna1_all_genes.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Chlorophyta/Chlamydomonas_reinhardtii/Chlamydomonas_reinhardtii.v3.0.19.protein_coding.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Chlorophyta/Chlamydomonas_reinhardtii/Chlamydomonas_reinhardtii.v3.0.19.protein_coding.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Chlorophyta/Chlamydomonas_reinhardtii/Chlamydomonas_reinhardtii.v3.0.19.protein_coding.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Chlorophyta/Micromonas_pusilla_CCMP1545_v2.0/GCA_000151265.1_Micromonas_pusilla_CCMP1545_v2.0_genomic.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Chlorophyta/Micromonas_pusilla_CCMP1545_v2.0/GCA_000151265.1_Micromonas_pusilla_CCMP1545_v2.0_genomic.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Chlorophyta/Micromonas_pusilla_CCMP1545_v2.0/GCA_000151265.1_Micromonas_pusilla_CCMP1545_v2.0_genomic.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Choanoflagellata/Monosiga_brevicollis_mx1_1/monosiga_brevicollis_mx1_1_transcripts.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Choanoflagellata/Monosiga_brevicollis_mx1_1/monosiga_brevicollis_mx1_1_transcripts.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Choanoflagellata/Monosiga_brevicollis_mx1_1/monosiga_brevicollis_mx1_1_transcripts.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Cryptophyte/Guillardia_theta/Guillardia_theta.GCA_000315625.1.20.fixed.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Cryptophyte/Guillardia_theta/Guillardia_theta.GCA_000315625.1.20.fixed.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Cryptophyte/Guillardia_theta/Guillardia_theta.GCA_000315625.1.20.fixed.ORF.fa
module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/genomes/Filasterea/Capsaspora_owczarzaki_atcc_30864_2/capsaspora_owczarzaki_atcc_30864_2_transcripts.ORF.PFAM27-A --tblout /N/dc2/projects/marinovg/genomes/Filasterea/Capsaspora_owczarzaki_atcc_30864_2/capsaspora_owczarzaki_atcc_30864_2_transcripts.ORF.PFAM27-A.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/genomes/Filasterea/Capsaspora_owczarzaki_atcc_30864_2/capsaspora_owczarzaki_atcc_30864_2_transcripts.ORF.fa