# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SNF2_N PF00176.18 CAMPEP_0189007780 - 6.9e-51 172.8 0.0 5.1e-28 97.7 0.0 2.4 2 0 0 2 2 2 2 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189007780 - 2.5e-11 43.2 0.0 6.1e-11 42.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0189007780 - 0.0035 16.2 0.2 0.0089 14.8 0.0 1.8 2 0 0 2 2 2 1 Class II histone deacetylase complex subunits 2 and 3 AAA_14 PF13173.1 CAMPEP_0189007780 - 0.11 12.4 0.0 0.29 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain SNF2_N PF00176.18 CAMPEP_0189050584 - 2.3e-55 187.5 0.1 4.7e-55 186.4 0.0 1.6 2 0 0 2 2 2 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189050584 - 1.4e-12 47.2 0.0 2.9e-12 46.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain WW PF00397.21 CAMPEP_0189050584 - 2.6e-09 36.7 10.5 0.00017 21.3 1.8 2.7 2 0 0 2 2 2 2 WW domain DEAD PF00270.24 CAMPEP_0189050584 - 5e-06 26.0 0.0 1e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 CAMPEP_0189050584 - 0.0018 18.1 0.1 0.013 15.3 0.0 2.4 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit HDA2-3 PF11496.3 CAMPEP_0189050584 - 0.012 14.4 0.2 0.4 9.4 0.0 2.3 2 0 0 2 2 2 0 Class II histone deacetylase complex subunits 2 and 3 PHD PF00628.24 CAMPEP_0189050584 - 0.36 10.5 31.9 0.046 13.4 4.1 5.0 4 2 0 4 4 4 0 PHD-finger SNF2_N PF00176.18 CAMPEP_0189050724 - 8.6e-48 162.6 0.0 1.2e-47 162.2 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189050724 - 1.4e-15 56.9 0.0 2.3e-13 49.8 0.0 2.4 2 0 0 2 2 2 2 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0189050724 - 0.026 14.3 0.0 0.24 11.2 0.0 2.1 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AT_hook PF02178.14 CAMPEP_0189050724 - 0.063 12.9 5.0 0.22 11.2 3.5 2.0 1 0 0 1 1 1 0 AT hook motif SNF2_N PF00176.18 CAMPEP_0189055962 - 4.7e-64 216.0 0.0 3.8e-32 111.2 0.0 2.4 2 0 0 2 2 2 2 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189055962 - 6e-14 51.6 0.0 2.4e-13 49.7 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain zf-PARP PF00645.13 CAMPEP_0189055962 - 4.7e-12 45.9 1.4 1.6e-11 44.2 0.0 2.8 2 0 0 2 2 1 1 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region zf-RING_2 PF13639.1 CAMPEP_0189055962 - 2.3e-10 40.1 5.6 2.3e-10 40.1 3.9 2.9 2 0 0 2 2 1 1 Ring finger domain SAP PF02037.22 CAMPEP_0189055962 - 1.6e-06 27.4 0.2 7.1e-05 22.2 0.0 3.1 2 0 0 2 2 2 1 SAP domain ResIII PF04851.10 CAMPEP_0189055962 - 1.9e-06 27.8 0.0 0.0013 18.6 0.0 3.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zf-C3HC4_2 PF13923.1 CAMPEP_0189055962 - 2.6e-05 24.1 5.8 2.6e-05 24.1 4.0 3.0 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-C3HC4 PF00097.20 CAMPEP_0189055962 - 4e-05 23.1 6.7 4e-05 23.1 4.7 2.6 2 0 0 2 2 1 1 Zinc finger, C3HC4 type (RING finger) zf-rbx1 PF12678.2 CAMPEP_0189055962 - 4.6e-05 23.4 3.7 4.6e-05 23.4 2.5 2.7 3 0 0 3 3 2 1 RING-H2 zinc finger zf-RING_5 PF14634.1 CAMPEP_0189055962 - 5.2e-05 22.8 7.0 5.2e-05 22.8 4.8 3.3 4 0 0 4 4 2 1 zinc-RING finger domain zf-RING_UBOX PF13445.1 CAMPEP_0189055962 - 0.00059 19.4 2.4 0.0028 17.3 1.7 2.3 1 0 0 1 1 1 1 RING-type zinc-finger FANCL_C PF11793.3 CAMPEP_0189055962 - 0.0045 16.9 5.2 0.019 14.8 3.6 2.2 1 0 0 1 1 1 1 FANCL C-terminal domain zf-Apc11 PF12861.2 CAMPEP_0189055962 - 0.011 15.5 2.4 0.011 15.5 1.6 2.1 2 0 0 2 2 1 0 Anaphase-promoting complex subunit 11 RING-H2 finger zf-Nse PF11789.3 CAMPEP_0189055962 - 0.015 14.8 5.2 0.038 13.4 3.6 1.7 1 0 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit zf-C2HC_2 PF13913.1 CAMPEP_0189055962 - 0.017 14.7 0.1 0.017 14.7 0.1 3.5 4 0 0 4 4 4 0 zinc-finger of a C2HC-type SNF2_N PF00176.18 CAMPEP_0189010176 - 4.1e-50 170.2 0.0 4.3e-49 166.9 0.0 2.7 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189010176 - 8e-13 48.0 0.0 5.8e-12 45.3 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain PQQ_3 PF13570.1 CAMPEP_0189010176 - 0.0001 22.4 18.6 0.12 12.6 0.6 6.8 7 0 0 7 7 7 2 PQQ-like domain PAN_4 PF14295.1 CAMPEP_0189010176 - 0.044 13.4 0.6 0.14 11.8 0.4 1.9 1 0 0 1 1 1 0 PAN domain PQQ PF01011.16 CAMPEP_0189010176 - 0.048 13.2 7.2 0.34 10.5 0.1 4.1 5 0 0 5 5 5 0 PQQ enzyme repeat SNF2_N PF00176.18 CAMPEP_0189055576 - 1.3e-53 181.7 0.0 1.3e-46 158.7 0.0 3.4 2 1 0 2 2 2 2 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189055576 - 3.3e-11 42.9 0.0 8.4e-11 41.5 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0189055576 - 3.9e-08 33.3 0.0 6.4e-07 29.3 0.0 2.7 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit HDA2-3 PF11496.3 CAMPEP_0189055576 - 0.019 13.7 0.0 0.065 12.0 0.0 1.9 1 1 0 1 1 1 0 Class II histone deacetylase complex subunits 2 and 3 SNF2_N PF00176.18 CAMPEP_0189010252 - 1.1e-67 228.0 0.1 4.5e-66 222.6 0.0 2.5 2 0 0 2 2 2 2 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189010252 - 1e-14 54.1 0.0 2.3e-14 52.9 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 CAMPEP_0189090860 - 2.2e-56 190.8 0.0 3.6e-55 186.8 0.0 2.6 2 1 0 2 2 2 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189090860 - 6e-13 48.4 0.0 2.7e-12 46.3 0.0 2.0 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.24 CAMPEP_0189090860 - 0.043 13.3 0.0 0.17 11.3 0.0 2.0 2 0 0 2 2 2 0 DEAD/DEAH box helicase Ycf1 PF05758.7 CAMPEP_0189090860 - 1.8 6.1 3.4 2.9 5.4 2.3 1.2 1 0 0 1 1 1 0 Ycf1 SDA1 PF05285.7 CAMPEP_0189090860 - 2.3 7.4 18.5 0.057 12.7 6.7 2.5 3 0 0 3 3 3 0 SDA1 Nop14 PF04147.7 CAMPEP_0189090860 - 9.5 3.9 17.0 14 3.3 11.8 1.2 1 0 0 1 1 1 0 Nop14-like family SNF2_N PF00176.18 CAMPEP_0189020822 - 5.3e-57 192.8 0.0 2.2e-56 190.8 0.0 2.0 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189020822 - 4.8e-14 51.9 0.0 1.3e-13 50.6 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain Agenet PF05641.7 CAMPEP_0189020822 - 4.8e-10 39.4 0.0 0.00062 19.8 0.0 2.6 2 0 0 2 2 2 2 Agenet domain ResIII PF04851.10 CAMPEP_0189020822 - 6.7e-07 29.3 0.0 1.6e-05 24.7 0.0 3.2 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit zf-RanBP PF00641.13 CAMPEP_0189020822 - 0.1 11.7 1.7 0.23 10.5 1.2 1.6 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others GCC2_GCC3 PF07699.8 CAMPEP_0189020822 - 0.2 11.2 1.0 0.56 9.8 0.7 1.7 1 0 0 1 1 1 0 GCC2 and GCC3 SNF2_N PF00176.18 CAMPEP_0189005200 - 2.1e-20 72.7 0.3 2.8e-20 72.2 0.2 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189005200 - 2.7e-13 49.5 0.0 5.7e-13 48.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0189005200 - 8.4e-11 41.2 0.0 1.4e-10 40.4 0.0 1.4 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 SNF2_N PF00176.18 CAMPEP_0189154468 - 3.1e-66 223.1 0.5 5.1e-66 222.4 0.4 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189154468 - 5.7e-15 54.9 0.1 1.7e-13 50.2 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0189154468 - 5e-07 29.7 0.3 2e-06 27.7 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HDA2-3 PF11496.3 CAMPEP_0189154468 - 1.9e-06 26.9 0.0 1.9e-06 26.9 0.0 1.5 2 0 0 2 2 2 1 Class II histone deacetylase complex subunits 2 and 3 DEAD PF00270.24 CAMPEP_0189154468 - 3.4e-05 23.3 0.1 8.7e-05 22.0 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 CAMPEP_0189154468 - 0.02 15.0 0.0 0.072 13.2 0.0 1.9 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 CAMPEP_0189154468 - 0.029 13.3 1.4 0.036 13.0 0.0 1.8 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ProRS-C_2 PF09181.5 CAMPEP_0189154468 - 0.1 12.5 0.0 19 5.2 0.0 2.6 2 0 0 2 2 2 0 Prolyl-tRNA synthetase, C-terminal SNF2_N PF00176.18 CAMPEP_0189165062 - 8.7e-60 202.0 0.0 1.4e-59 201.3 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189165062 - 3.1e-16 58.9 0.0 1.2e-15 57.0 0.0 2.2 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0189165062 - 5.1e-09 35.3 0.0 9.9e-09 34.4 0.0 1.4 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 DEAD PF00270.24 CAMPEP_0189165062 - 7.9e-06 25.4 0.0 1.4e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Apc4_WD40 PF12894.2 CAMPEP_0189165062 - 0.038 13.4 0.1 0.2 11.1 0.0 2.2 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 4 WD40 domain SNF2_N PF00176.18 CAMPEP_0189042110 - 1.5e-57 194.6 0.0 1.1e-27 96.5 0.0 2.5 2 1 0 2 2 2 2 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189042110 - 1e-13 50.9 0.0 2.5e-13 49.7 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain zf-PARP PF00645.13 CAMPEP_0189042110 - 2e-11 43.9 0.0 8.4e-11 41.9 0.0 2.1 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region zf-RING_2 PF13639.1 CAMPEP_0189042110 - 5.2e-09 35.7 3.0 5.2e-09 35.7 2.1 2.5 2 0 0 2 2 1 1 Ring finger domain zf-C3HC4 PF00097.20 CAMPEP_0189042110 - 5.6e-07 29.1 1.1 5.6e-07 29.1 0.8 2.7 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-C3HC4_2 PF13923.1 CAMPEP_0189042110 - 2.8e-06 27.2 1.5 2.8e-06 27.2 1.0 3.1 3 0 0 3 3 3 1 Zinc finger, C3HC4 type (RING finger) zf-rbx1 PF12678.2 CAMPEP_0189042110 - 2.6e-05 24.2 0.4 6.8e-05 22.9 0.3 1.7 1 0 0 1 1 1 1 RING-H2 zinc finger ResIII PF04851.10 CAMPEP_0189042110 - 0.00013 21.8 0.0 0.0043 16.9 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zf-Nse PF11789.3 CAMPEP_0189042110 - 0.013 15.0 0.1 0.03 13.8 0.1 1.6 1 0 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit zf-Apc11 PF12861.2 CAMPEP_0189042110 - 0.027 14.2 0.7 0.062 13.1 0.5 1.6 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 11 RING-H2 finger zf-C3HC4_4 PF15227.1 CAMPEP_0189042110 - 0.53 10.1 7.7 0.12 12.3 2.0 2.5 2 0 0 2 2 2 0 zinc finger of C3HC4-type, RING zf-RING_5 PF14634.1 CAMPEP_0189042110 - 1.2 8.9 13.9 0.074 12.7 1.3 3.3 3 0 0 3 3 3 0 zinc-RING finger domain zinc_ribbon_2 PF13240.1 CAMPEP_0189042110 - 1.8 8.1 7.5 16 5.1 0.2 4.3 3 0 0 3 3 3 0 zinc-ribbon domain SNF2_N PF00176.18 CAMPEP_0189160784 - 9.1e-52 175.6 0.0 5.3e-51 173.1 0.0 2.1 1 1 0 1 1 1 1 SNF2 family N-terminal domain SAP PF02037.22 CAMPEP_0189160784 - 5.2e-18 64.0 0.1 0.00025 20.4 0.0 3.7 3 0 0 3 3 3 3 SAP domain Helicase_C PF00271.26 CAMPEP_0189160784 - 1.8e-12 46.9 0.2 5.4e-12 45.4 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0189160784 - 5.5e-07 29.5 0.0 7.6e-06 25.8 0.0 2.8 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 CAMPEP_0189160784 - 0.0014 18.8 0.1 0.27 11.3 0.0 4.6 3 2 1 4 4 4 1 AAA domain SNF2_N PF00176.18 CAMPEP_0189042396 - 1.3e-52 178.5 0.0 1.7e-52 178.1 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189042396 - 2.5e-11 43.2 0.0 6.3e-11 41.9 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0189042396 - 6.4e-05 22.8 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 CAMPEP_0189042396 - 0.00035 20.1 0.0 0.0007 19.1 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase HDA2-3 PF11496.3 CAMPEP_0189042396 - 0.0005 18.9 0.0 0.00086 18.2 0.0 1.3 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 CsbD PF05532.7 CAMPEP_0189042396 - 7.3 6.3 10.5 7.6 6.3 0.6 3.3 3 0 0 3 3 3 0 CsbD-like SNF2_N PF00176.18 CAMPEP_0189029394 - 1.5e-64 217.6 1.3 2.3e-64 217.0 0.9 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189029394 - 3e-18 65.4 0.2 1.1e-16 60.4 0.0 3.0 3 0 0 3 3 3 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0189029394 - 1.8e-07 30.2 0.0 3.8e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 ResIII PF04851.10 CAMPEP_0189029394 - 2.6e-07 30.6 0.4 5.5e-07 29.6 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 CAMPEP_0189029394 - 5.4e-05 22.7 0.0 0.00014 21.4 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.18 CAMPEP_0189120424 - 2.1e-66 223.7 0.0 2.9e-66 223.2 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189120424 - 5.3e-16 58.2 0.1 1.1e-15 57.1 0.1 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0189120424 - 4.1e-08 32.4 0.0 6.7e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 DEAD PF00270.24 CAMPEP_0189120424 - 0.0048 16.4 0.0 0.041 13.3 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.18 CAMPEP_0189080214 - 7.4e-33 113.6 0.0 1e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0189080214 - 1.7e-11 43.8 0.0 4.4e-11 42.4 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0189080214 - 0.00032 19.6 0.0 0.00056 18.8 0.0 1.3 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3