# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SNF2_N PF00176.18 CAMPEP_0200695960 - 1e-62 211.6 0.0 1.4e-62 211.2 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200695960 - 9.1e-14 51.0 0.0 1.8e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0200695960 - 2.5e-06 26.5 0.0 3.4e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 ResIII PF04851.10 CAMPEP_0200695960 - 0.015 15.1 0.0 0.064 13.0 0.0 2.0 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit SNF2_N PF00176.18 CAMPEP_0200695172 - 2.4e-25 88.9 0.0 3.6e-25 88.3 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200695172 - 1.6e-11 43.9 0.0 2.7e-11 43.1 0.0 1.4 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 CAMPEP_0200693472 - 2.6e-29 101.9 0.0 3.2e-28 98.3 0.0 2.1 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200693472 - 2.6e-13 49.6 0.0 6.1e-13 48.4 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0200693472 - 0.071 12.9 1.6 0.14 12.0 0.0 2.3 3 0 0 3 3 3 0 Type III restriction enzyme, res subunit SNF2_N PF00176.18 CAMPEP_0200515848 - 1.9e-51 174.6 0.0 1.7e-50 171.5 0.0 2.6 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200515848 - 2.3e-13 49.7 0.0 9.8e-13 47.7 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.18 CAMPEP_0200531656 - 1.9e-63 214.0 0.0 2.5e-63 213.6 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200531656 - 1.2e-14 53.8 0.0 2.9e-14 52.6 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0200531656 - 2.3e-06 27.5 0.0 4.9e-06 26.4 0.0 1.5 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 CAMPEP_0200531656 - 8.8e-05 22.0 0.0 0.00019 20.9 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_22 PF13401.1 CAMPEP_0200531656 - 0.14 12.3 0.0 0.74 9.9 0.0 2.2 2 1 0 2 2 2 0 AAA domain SNF2_N PF00176.18 CAMPEP_0200522580 - 3.1e-53 180.5 0.0 5.1e-52 176.5 0.0 2.3 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200522580 - 1.9e-13 50.0 0.0 1.3e-12 47.3 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0200522580 - 3.8e-06 26.8 0.0 4.9e-05 23.2 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HDA2-3 PF11496.3 CAMPEP_0200522580 - 0.047 12.4 0.0 0.2 10.4 0.0 1.9 2 0 0 2 2 2 0 Class II histone deacetylase complex subunits 2 and 3 SNF2_N PF00176.18 CAMPEP_0200533560 - 1.5e-64 217.7 9.0 2e-64 217.2 6.2 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200533560 - 2.2e-17 62.6 0.0 6.4e-17 61.1 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0200533560 - 2.4e-08 34.0 1.5 3.7e-08 33.3 0.1 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 CAMPEP_0200533560 - 8.7e-08 31.8 0.0 1.6e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HDA2-3 PF11496.3 CAMPEP_0200533560 - 0.0083 14.9 0.0 0.018 13.8 0.0 1.5 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 AAA_22 PF13401.1 CAMPEP_0200533560 - 0.017 15.2 0.8 0.05 13.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain TK PF00265.13 CAMPEP_0200533560 - 0.14 11.7 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Thymidine kinase DUF1840 PF08895.6 CAMPEP_0200533560 - 0.44 10.5 5.6 3.9 7.5 3.1 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1840) SNF2_N PF00176.18 CAMPEP_0200548830 - 5.7e-64 215.7 0.0 8.7e-64 215.1 0.0 1.3 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200548830 - 8.2e-14 51.2 0.0 1.7e-13 50.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0200548830 - 5.9e-05 22.0 0.0 0.00023 20.1 0.0 1.8 1 1 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 SNF2_N PF00176.18 CAMPEP_0200559272 - 3.2e-64 216.5 0.0 2.6e-32 111.8 0.0 2.3 2 0 0 2 2 2 2 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200559272 - 6.4e-14 51.5 0.0 1.4e-13 50.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain zf-PARP PF00645.13 CAMPEP_0200559272 - 1.8e-11 44.0 0.0 5.4e-11 42.5 0.0 1.9 1 0 0 1 1 1 1 Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region SAP PF02037.22 CAMPEP_0200559272 - 1.9e-08 33.6 0.0 5e-08 32.2 0.0 1.8 1 0 0 1 1 1 1 SAP domain zf-RING_2 PF13639.1 CAMPEP_0200559272 - 3.5e-08 33.1 1.2 3.5e-08 33.1 0.9 2.6 2 0 0 2 2 1 1 Ring finger domain zf-C3HC4 PF00097.20 CAMPEP_0200559272 - 5.6e-06 25.9 0.4 5.6e-06 25.9 0.3 2.6 2 0 0 2 2 1 1 Zinc finger, C3HC4 type (RING finger) AP2 PF00847.15 CAMPEP_0200559272 - 1.1e-05 25.5 0.3 3.3e-05 23.9 0.2 1.9 2 0 0 2 2 2 1 AP2 domain zf-rbx1 PF12678.2 CAMPEP_0200559272 - 2.5e-05 24.2 0.3 8.9e-05 22.5 0.2 2.0 1 0 0 1 1 1 1 RING-H2 zinc finger ResIII PF04851.10 CAMPEP_0200559272 - 0.00029 20.7 0.0 0.041 13.7 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit zf-C3HC4_2 PF13923.1 CAMPEP_0200559272 - 0.0059 16.6 1.3 0.0059 16.6 0.9 2.9 2 0 0 2 2 2 1 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 CAMPEP_0200559272 - 0.0062 15.7 3.4 0.64 9.2 0.1 3.7 3 0 0 3 3 3 1 zinc-ribbon domain zf-RING_5 PF14634.1 CAMPEP_0200559272 - 0.0085 15.8 1.3 0.0085 15.8 0.9 3.0 2 0 0 2 2 2 1 zinc-RING finger domain zinc_ribbon_2 PF13240.1 CAMPEP_0200559272 - 0.055 12.9 6.1 3.3 7.2 0.2 3.7 3 0 0 3 3 3 0 zinc-ribbon domain SNF2_N PF00176.18 CAMPEP_0200544632 - 2.5e-55 187.4 0.0 3.1e-55 187.0 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200544632 - 6.4e-12 45.1 0.0 1.7e-11 43.8 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0200544632 - 3.5e-08 32.6 0.0 7.1e-08 31.6 0.0 1.4 1 0 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 DEAD PF00270.24 CAMPEP_0200544632 - 3.6e-07 29.8 0.0 1.5e-06 27.8 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase ResIII PF04851.10 CAMPEP_0200544632 - 1.7e-06 27.9 0.0 5.1e-06 26.4 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HTH_43 PF09904.4 CAMPEP_0200544632 - 0.061 13.1 1.7 0.38 10.5 0.0 2.6 3 0 0 3 3 3 0 Winged helix-turn helix SNF2_N PF00176.18 CAMPEP_0200544660 - 1.5e-67 227.5 0.0 2.1e-67 227.0 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain zf-RING_2 PF13639.1 CAMPEP_0200544660 - 3.7e-12 45.8 10.7 7.2e-12 44.9 7.4 1.5 1 0 0 1 1 1 1 Ring finger domain Helicase_C PF00271.26 CAMPEP_0200544660 - 2.9e-11 43.0 0.0 8.3e-11 41.6 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain zf-C3HC4_2 PF13923.1 CAMPEP_0200544660 - 2.9e-08 33.5 9.4 5.2e-08 32.7 6.5 1.4 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 CAMPEP_0200544660 - 4.1e-07 29.6 8.1 7e-07 28.8 5.6 1.4 1 0 0 1 1 1 1 zinc-RING finger domain zf-rbx1 PF12678.2 CAMPEP_0200544660 - 8.6e-07 28.9 4.5 1.7e-06 28.0 3.2 1.4 1 0 0 1 1 1 1 RING-H2 zinc finger zf-C3HC4 PF00097.20 CAMPEP_0200544660 - 7.4e-06 25.5 9.4 1.3e-05 24.7 6.5 1.4 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DEAD PF00270.24 CAMPEP_0200544660 - 1.3e-05 24.7 0.0 6.3e-05 22.5 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase zf-C3HC4_3 PF13920.1 CAMPEP_0200544660 - 0.0001 21.9 10.7 0.00018 21.1 7.4 1.4 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) zf-Apc11 PF12861.2 CAMPEP_0200544660 - 0.00083 19.1 6.0 0.0018 18.0 4.2 1.5 1 0 0 1 1 1 1 Anaphase-promoting complex subunit 11 RING-H2 finger HIRAN PF08797.6 CAMPEP_0200544660 - 0.001 18.9 0.0 0.0023 17.8 0.0 1.6 1 0 0 1 1 1 1 HIRAN domain U-box PF04564.10 CAMPEP_0200544660 - 0.021 14.8 0.0 0.048 13.6 0.0 1.6 1 0 0 1 1 1 0 U-box domain zf-RING_4 PF14570.1 CAMPEP_0200544660 - 0.028 14.0 11.5 0.05 13.2 8.0 1.4 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain zf-Nse PF11789.3 CAMPEP_0200544660 - 0.041 13.4 2.0 0.083 12.4 1.4 1.5 1 0 0 1 1 1 0 Zinc-finger of the MIZ type in Nse subunit ResIII PF04851.10 CAMPEP_0200544660 - 0.05 13.4 0.0 0.095 12.5 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit zf-RING_UBOX PF13445.1 CAMPEP_0200544660 - 0.069 12.8 7.6 0.14 11.8 5.3 1.5 1 0 0 1 1 1 0 RING-type zinc-finger FANCL_C PF11793.3 CAMPEP_0200544660 - 0.078 12.9 8.9 0.23 11.4 6.1 1.8 1 1 0 1 1 1 0 FANCL C-terminal domain zf-RING_6 PF14835.1 CAMPEP_0200544660 - 0.092 12.5 3.7 0.36 10.6 2.6 1.9 1 1 1 2 2 2 0 zf-RING of BARD1-type protein zf-C3HC4_4 PF15227.1 CAMPEP_0200544660 - 0.096 12.5 8.5 0.17 11.8 5.9 1.4 1 0 0 1 1 1 0 zinc finger of C3HC4-type, RING RINGv PF12906.2 CAMPEP_0200544660 - 0.15 12.1 9.0 0.33 11.0 6.3 1.6 1 0 0 1 1 1 0 RING-variant domain DEAD_2 PF06733.10 CAMPEP_0200544660 - 0.32 10.3 0.0 0.59 9.5 0.0 1.3 1 0 0 1 1 1 0 DEAD_2 SNF2_N PF00176.18 CAMPEP_0200575108 - 4.9e-32 110.9 0.0 1.4e-31 109.4 0.0 1.6 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200575108 - 3.2e-13 49.3 0.0 5.7e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain zf-RING_2 PF13639.1 CAMPEP_0200575108 - 5.8e-09 35.6 2.4 5.8e-09 35.6 1.7 2.5 2 1 0 2 2 1 1 Ring finger domain zf-C3HC4_2 PF13923.1 CAMPEP_0200575108 - 2.7e-06 27.2 1.9 2.7e-06 27.2 1.3 2.0 2 0 0 2 2 1 1 Zinc finger, C3HC4 type (RING finger) zf-C3HC4 PF00097.20 CAMPEP_0200575108 - 4.4e-06 26.2 1.4 4.4e-06 26.2 0.9 2.0 2 0 0 2 2 1 1 Zinc finger, C3HC4 type (RING finger) zf-RING_5 PF14634.1 CAMPEP_0200575108 - 0.0006 19.4 1.7 0.0006 19.4 1.2 2.4 2 1 0 2 2 2 1 zinc-RING finger domain zf-rbx1 PF12678.2 CAMPEP_0200575108 - 0.0015 18.5 0.5 0.0015 18.5 0.3 1.9 2 0 0 2 2 1 1 RING-H2 zinc finger zf-RING_UBOX PF13445.1 CAMPEP_0200575108 - 0.0036 16.9 0.3 0.0095 15.6 0.2 1.8 1 0 0 1 1 1 1 RING-type zinc-finger Prok-RING_1 PF14446.1 CAMPEP_0200575108 - 0.006 16.2 2.2 0.006 16.2 1.5 2.9 3 0 0 3 3 2 1 Prokaryotic RING finger family 1 FANCL_C PF11793.3 CAMPEP_0200575108 - 0.017 15.0 0.4 0.017 15.0 0.3 2.2 3 0 0 3 3 1 0 FANCL C-terminal domain zf-Apc11 PF12861.2 CAMPEP_0200575108 - 0.031 14.1 0.4 0.031 14.1 0.3 2.0 2 0 0 2 2 2 0 Anaphase-promoting complex subunit 11 RING-H2 finger zf-TFIIIC PF12660.2 CAMPEP_0200575108 - 0.038 13.8 0.2 0.038 13.8 0.1 2.2 2 0 0 2 2 2 0 Putative zinc-finger of transcription factor IIIC complex HDA2-3 PF11496.3 CAMPEP_0200575108 - 0.067 11.9 0.1 7.7 5.2 0.0 2.7 3 0 0 3 3 3 0 Class II histone deacetylase complex subunits 2 and 3 zf-C3HC4_4 PF15227.1 CAMPEP_0200575108 - 0.16 11.8 2.6 0.5 10.2 1.8 1.9 1 0 0 1 1 1 0 zinc finger of C3HC4-type, RING PHD PF00628.24 CAMPEP_0200575108 - 7.3 6.3 11.2 0.12 12.1 1.2 2.3 2 0 0 2 2 2 0 PHD-finger SNF2_N PF00176.18 CAMPEP_0200577026 - 9.1e-52 175.7 0.0 1.3e-51 175.2 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain UBA PF00627.26 CAMPEP_0200577026 - 2.4e-13 49.4 8.7 2.8e-06 27.0 0.6 3.5 3 0 0 3 3 3 2 UBA/TS-N domain Helicase_C PF00271.26 CAMPEP_0200577026 - 1.1e-12 47.6 0.0 3.4e-12 46.0 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 CAMPEP_0200577026 - 1.9e-07 30.7 0.0 3.5e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 CAMPEP_0200577026 - 4.9e-06 26.5 0.0 7.8e-06 25.8 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HTH_8 PF02954.14 CAMPEP_0200577026 - 0.12 11.8 4.3 0.69 9.5 0.3 3.1 2 0 0 2 2 2 0 Bacterial regulatory protein, Fis family SNF2_N PF00176.18 CAMPEP_0200585680 - 3.2e-58 196.8 0.0 5.6e-58 196.0 0.0 1.4 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200585680 - 3.8e-14 52.2 0.0 1.1e-13 50.7 0.0 1.8 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HDA2-3 PF11496.3 CAMPEP_0200585680 - 7.4e-07 28.2 0.0 4.5e-06 25.7 0.0 2.0 1 1 0 1 1 1 1 Class II histone deacetylase complex subunits 2 and 3 SNF2_N PF00176.18 CAMPEP_0200588556 - 3.6e-48 163.8 0.0 5.2e-48 163.3 0.0 1.1 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200588556 - 2.9e-15 55.8 0.0 2.2e-13 49.8 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0200588556 - 0.00032 20.5 0.0 0.035 13.9 0.0 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_34 PF13872.1 CAMPEP_0200588556 - 0.00088 18.1 0.0 0.87 8.2 0.0 2.9 3 0 0 3 3 3 2 P-loop containing NTP hydrolase pore-1 SNF2_N PF00176.18 CAMPEP_0200670270 - 1.1e-63 214.8 0.2 1.7e-63 214.2 0.0 1.4 2 0 0 2 2 2 1 SNF2 family N-terminal domain Helicase_C PF00271.26 CAMPEP_0200670270 - 5.5e-15 54.9 0.1 6.1e-14 51.6 0.0 2.8 3 0 0 3 3 3 1 Helicase conserved C-terminal domain ResIII PF04851.10 CAMPEP_0200670270 - 6e-06 26.2 0.0 1.1e-05 25.3 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 CAMPEP_0200670270 - 0.001 18.6 0.0 0.002 17.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase