module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Perkinsida--Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0--GCA_000006405.1_JCVI_PMG_1.0.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Perkinsida--Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0--GCA_000006405.1_JCVI_PMG_1.0.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Dinoflagellata--Symbiodinium_minutum_Clade_B1_Ver1.120123--symbB.v1.2.augustus.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Dinoflagellata--Symbiodinium_minutum_Clade_B1_Ver1.120123--symbB.v1.2.augustus.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H2A.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H2A.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.H2A.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.H2A.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H2A.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H2A.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H2A.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H2A.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.H2A.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.H2A.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-CCMP2229.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-CCMP2229.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-Wilson.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-Wilson.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C15.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C15.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-Mp.pep.H2A.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-Mp.pep.H2A.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Perkinsida--Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0--GCA_000006405.1_JCVI_PMG_1.0.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Perkinsida--Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0--GCA_000006405.1_JCVI_PMG_1.0.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Dinoflagellata--Symbiodinium_minutum_Clade_B1_Ver1.120123--symbB.v1.2.augustus.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Dinoflagellata--Symbiodinium_minutum_Clade_B1_Ver1.120123--symbB.v1.2.augustus.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-Wilson.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-Wilson.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C15.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C15.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-Mp.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-Mp.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Togula-jolla-CCCM-725.pep.H2B.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Togula-jolla-CCCM-725.pep.H2B.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H2B.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H2B.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H2B.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H2B.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.H2B.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.H2B.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Ceratium-fusus-PA161109.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Ceratium-fusus-PA161109.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-CCMP2229.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-CCMP2229.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-Wilson.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-Wilson.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pyrodinium-bahamense-pbaha01.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pyrodinium-bahamense-pbaha01.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C15.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C15.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-Mp.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-Mp.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Ceratium-fusus-PA161109.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Ceratium-fusus-PA161109.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Togula-jolla-CCCM-725.pep.H3.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Togula-jolla-CCCM-725.pep.H3.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Dinoflagellata--Symbiodinium_minutum_Clade_B1_Ver1.120123--symbB.v1.2.augustus.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Dinoflagellata--Symbiodinium_minutum_Clade_B1_Ver1.120123--symbB.v1.2.augustus.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Perkinsida--Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0--GCA_000006405.1_JCVI_PMG_1.0.pep.H3.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Perkinsida--Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0--GCA_000006405.1_JCVI_PMG_1.0.pep.H3.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Azadinium-spinosum-3D9.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Chromera-velia-CCMP2878.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-CCMP2229.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-CCMP2229.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP1.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-SP3.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-Wilson.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karenia-brevis-Wilson.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Oxyrrhis-marina.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pyrodinium-bahamense-pbaha01.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Pyrodinium-bahamense-pbaha01.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C15.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C15.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-Mp.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-Mp.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep.H4.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep.H4.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H4.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.H4.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H4.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.H4.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H4.e1e-10.blastp.N-M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-hmmscan-Symbiodinium-sp-C1.pep.H4.e1e-10.blastp.N-M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Dinoflagellata--Symbiodinium_minutum_Clade_B1_Ver1.120123--symbB.v1.2.augustus.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Dinoflagellata--Symbiodinium_minutum_Clade_B1_Ver1.120123--symbB.v1.2.augustus.pep.H4.e1e-10.blastp.unique.M.muscle
module load muscle/3.8.31; muscle -in /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Perkinsida--Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0--GCA_000006405.1_JCVI_PMG_1.0.pep.H4.e1e-10.blastp.unique.M.fa -out /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones/muscle/Histone-Perkinsida--Perkinsus_marinus_ATCC_50983-JCVI_PMG_1.0--GCA_000006405.1_JCVI_PMG_1.0.pep.H4.e1e-10.blastp.unique.M.muscle