cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout Linker_histone-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout Linker_histone-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout Linker_histone-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout Linker_histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout Linker_histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Ammonia-sp.-Unknown.pep --tblout Linker_histone-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout Linker_histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout Linker_histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Amphiprora-sp.pep --tblout Linker_histone-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout Linker_histone-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout Linker_histone-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout Linker_histone-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout Linker_histone-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout Linker_histone-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout Linker_histone-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout Linker_histone-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout Linker_histone-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout Linker_histone-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout Linker_histone-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout Linker_histone-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Azadinium-spinosum-3D9.pep --tblout Linker_histone-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout Linker_histone-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout Linker_histone-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Bicosoecid-sp-ms1.pep --tblout Linker_histone-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout Linker_histone-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout Linker_histone-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout Linker_histone-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout Linker_histone-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout Linker_histone-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout Linker_histone-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout Linker_histone-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout Linker_histone-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout Linker_histone-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout Linker_histone-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Ceratium-fusus-PA161109.pep --tblout Linker_histone-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout Linker_histone-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chaetoceros-curvisetus.pep --tblout Linker_histone-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout Linker_histone-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout Linker_histone-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout Linker_histone-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout Linker_histone-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout Linker_histone-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chromera-velia-CCMP2878.pep --tblout Linker_histone-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout Linker_histone-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout Linker_histone-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout Linker_histone-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout Linker_histone-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout Linker_histone-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout Linker_histone-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout Linker_histone-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout Linker_histone-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout Linker_histone-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout Linker_histone-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout Linker_histone-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout Linker_histone-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Condylostoma-magnum-COL2.pep --tblout Linker_histone-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Corethron-pennatum-L29A3.pep --tblout Linker_histone-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout Linker_histone-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout Linker_histone-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout Linker_histone-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout Linker_histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout Linker_histone-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout Linker_histone-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout Linker_histone-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout Linker_histone-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout Linker_histone-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout Linker_histone-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout Linker_histone-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Debaryomyces-hansenii-J26.pep --tblout Linker_histone-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout Linker_histone-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout Linker_histone-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout Linker_histone-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout Linker_histone-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout Linker_histone-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout Linker_histone-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout Linker_histone-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout Linker_histone-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout Linker_histone-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout Linker_histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout Linker_histone-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Emiliania-huxleyi-374.pep --tblout Linker_histone-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Emiliania-huxleyi-379.pep --tblout Linker_histone-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout Linker_histone-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout Linker_histone-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout Linker_histone-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout Linker_histone-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout Linker_histone-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout Linker_histone-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Euplotes-focardii-TN1.pep --tblout Linker_histone-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout Linker_histone-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout Linker_histone-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout Linker_histone-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout Linker_histone-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout Linker_histone-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout Linker_histone-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout Linker_histone-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout Linker_histone-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout Linker_histone-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Florenciella-parvula-RCC1693.pep --tblout Linker_histone-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Florenciella-sp.-RCC1007.pep --tblout Linker_histone-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout Linker_histone-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout Linker_histone-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout Linker_histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout Linker_histone-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout Linker_histone-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout Linker_histone-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout Linker_histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout Linker_histone-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout Linker_histone-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout Linker_histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout Linker_histone-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout Linker_histone-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout Linker_histone-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout Linker_histone-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout Linker_histone-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Hanusia-phi-CCMP325.pep --tblout Linker_histone-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout Linker_histone-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout Linker_histone-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout Linker_histone-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout Linker_histone-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout Linker_histone-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout Linker_histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout Linker_histone-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout Linker_histone-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout Linker_histone-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout Linker_histone-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Heterosigma-akashiwo-NB.pep --tblout Linker_histone-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Imantonia-sp.-RCC918.pep --tblout Linker_histone-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout Linker_histone-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout Linker_histone-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout Linker_histone-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Karenia-brevis-CCMP2229.pep --tblout Linker_histone-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Karenia-brevis-SP1.pep --tblout Linker_histone-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Karenia-brevis-SP3.pep --tblout Linker_histone-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Karenia-brevis-Wilson.pep --tblout Linker_histone-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout Linker_histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout Linker_histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout Linker_histone-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout Linker_histone-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout Linker_histone-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout Linker_histone-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout Linker_histone-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout Linker_histone-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Litonotus-pictus-P1.pep --tblout Linker_histone-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout Linker_histone-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Lotharella-globosa-CCCM811.pep --tblout Linker_histone-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout Linker_histone-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout Linker_histone-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout Linker_histone-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout Linker_histone-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout Linker_histone-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout Linker_histone-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout Linker_histone-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Micromonas-sp-CCMP2099.pep --tblout Linker_histone-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Micromonas-sp-NEPCC29.pep --tblout Linker_histone-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Micromonas-sp-RCC472.pep --tblout Linker_histone-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Minchinia-chitonis-Unknown.pep --tblout Linker_histone-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout Linker_histone-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout Linker_histone-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout Linker_histone-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout Linker_histone-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout Linker_histone-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout Linker_histone-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout Linker_histone-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout Linker_histone-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout Linker_histone-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout Linker_histone-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout Linker_histone-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout Linker_histone-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout Linker_histone-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout Linker_histone-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout Linker_histone-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Oxyrrhis-marina.pep --tblout Linker_histone-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout Linker_histone-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout Linker_histone-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout Linker_histone-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout Linker_histone-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout Linker_histone-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pavlova-sp-CCMP459.pep --tblout Linker_histone-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout Linker_histone-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout Linker_histone-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout Linker_histone-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout Linker_histone-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout Linker_histone-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout Linker_histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout Linker_histone-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout Linker_histone-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pessonella-sp.-PRA-29.pep --tblout Linker_histone-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout Linker_histone-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout Linker_histone-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout Linker_histone-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout Linker_histone-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Picochlorum-sp.-RCC944.pep --tblout Linker_histone-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout Linker_histone-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout Linker_histone-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Platyophrya-macrostoma-WH.pep --tblout Linker_histone-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout Linker_histone-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout Linker_histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout Linker_histone-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout Linker_histone-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout Linker_histone-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout Linker_histone-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Proboscia-alata-PI_D3.pep --tblout Linker_histone-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout Linker_histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout Linker_histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout Linker_histone-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout Linker_histone-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Protocruzia-adherens-Boccale.pep --tblout Linker_histone-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout Linker_histone-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout Linker_histone-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout Linker_histone-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout Linker_histone-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout Linker_histone-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pteridomonas-danica-PT.pep --tblout Linker_histone-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout Linker_histone-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout Linker_histone-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout Linker_histone-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout Linker_histone-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout Linker_histone-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout Linker_histone-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout Linker_histone-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout Linker_histone-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Rhodella-maculata-CCMP736.pep --tblout Linker_histone-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Rhodomonas-lens-RHODO.pep --tblout Linker_histone-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout Linker_histone-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout Linker_histone-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Rosalina-sp.-Unknown.pep --tblout Linker_histone-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout Linker_histone-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout Linker_histone-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout Linker_histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout Linker_histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout Linker_histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout Linker_histone-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout Linker_histone-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout Linker_histone-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout Linker_histone-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout Linker_histone-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Sorites-sp.-Unknown.pep --tblout Linker_histone-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout Linker_histone-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout Linker_histone-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout Linker_histone-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout Linker_histone-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout Linker_histone-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Stichococcus-sp-RCC1054.pep --tblout Linker_histone-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout Linker_histone-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout Linker_histone-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout Linker_histone-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Strombidium-inclinatum-S3.pep --tblout Linker_histone-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout Linker_histone-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout Linker_histone-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout Linker_histone-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Symbiodinium-sp-C1.pep --tblout Linker_histone-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Symbiodinium-sp-C15.pep --tblout Linker_histone-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout Linker_histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Symbiodinium-sp-Mp.pep --tblout Linker_histone-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout Linker_histone-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout Linker_histone-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout Linker_histone-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout Linker_histone-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout Linker_histone-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout Linker_histone-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout Linker_histone-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout Linker_histone-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout Linker_histone-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout Linker_histone-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout Linker_histone-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout Linker_histone-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout Linker_histone-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout Linker_histone-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout Linker_histone-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout Linker_histone-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout Linker_histone-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Tiarina-fusus-LIS.pep --tblout Linker_histone-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout Linker_histone-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Togula-jolla-CCCM-725.pep --tblout Linker_histone-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Triceratium-dubium-CCMP147.pep --tblout Linker_histone-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout Linker_histone-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Undescribed-sp-CCMP2097.pep --tblout Linker_histone-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Undescribed-sp-CCMP2098.pep --tblout Linker_histone-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Undescribed-sp-CCMP2293.pep --tblout Linker_histone-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Undescribed-sp-CCMP2436.pep --tblout Linker_histone-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Undescribed-sp-D1.pep --tblout Linker_histone-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout Linker_histone-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout Linker_histone-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Uronema-sp.-Bbcil.pep --tblout Linker_histone-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout Linker_histone-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout Linker_histone-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout Linker_histone-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout Linker_histone-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Linker_histone-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout Linker_histone-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.Linker_histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout Histone-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout Histone-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout Histone-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout Histone-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout Histone-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Ammonia-sp.-Unknown.pep --tblout Histone-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout Histone-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout Histone-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Amphiprora-sp.pep --tblout Histone-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout Histone-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout Histone-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout Histone-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout Histone-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout Histone-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout Histone-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout Histone-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout Histone-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout Histone-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout Histone-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout Histone-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Azadinium-spinosum-3D9.pep --tblout Histone-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout Histone-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout Histone-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Bicosoecid-sp-ms1.pep --tblout Histone-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout Histone-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout Histone-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout Histone-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout Histone-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout Histone-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout Histone-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout Histone-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout Histone-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout Histone-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout Histone-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Ceratium-fusus-PA161109.pep --tblout Histone-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout Histone-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chaetoceros-curvisetus.pep --tblout Histone-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout Histone-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout Histone-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout Histone-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout Histone-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout Histone-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chromera-velia-CCMP2878.pep --tblout Histone-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout Histone-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout Histone-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout Histone-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout Histone-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout Histone-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout Histone-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout Histone-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout Histone-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout Histone-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout Histone-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout Histone-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout Histone-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Condylostoma-magnum-COL2.pep --tblout Histone-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Corethron-pennatum-L29A3.pep --tblout Histone-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout Histone-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout Histone-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout Histone-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout Histone-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout Histone-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout Histone-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout Histone-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout Histone-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout Histone-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout Histone-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout Histone-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Debaryomyces-hansenii-J26.pep --tblout Histone-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout Histone-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout Histone-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout Histone-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout Histone-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout Histone-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout Histone-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout Histone-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout Histone-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout Histone-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout Histone-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout Histone-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Emiliania-huxleyi-374.pep --tblout Histone-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Emiliania-huxleyi-379.pep --tblout Histone-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout Histone-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout Histone-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout Histone-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout Histone-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout Histone-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout Histone-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Euplotes-focardii-TN1.pep --tblout Histone-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout Histone-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout Histone-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout Histone-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout Histone-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout Histone-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout Histone-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout Histone-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout Histone-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout Histone-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Florenciella-parvula-RCC1693.pep --tblout Histone-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Florenciella-sp.-RCC1007.pep --tblout Histone-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout Histone-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout Histone-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout Histone-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout Histone-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout Histone-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout Histone-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout Histone-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout Histone-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout Histone-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout Histone-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout Histone-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout Histone-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout Histone-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout Histone-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout Histone-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Hanusia-phi-CCMP325.pep --tblout Histone-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout Histone-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout Histone-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout Histone-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout Histone-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout Histone-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout Histone-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout Histone-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout Histone-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout Histone-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout Histone-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Heterosigma-akashiwo-NB.pep --tblout Histone-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Imantonia-sp.-RCC918.pep --tblout Histone-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout Histone-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout Histone-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout Histone-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Karenia-brevis-CCMP2229.pep --tblout Histone-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Karenia-brevis-SP1.pep --tblout Histone-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Karenia-brevis-SP3.pep --tblout Histone-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Karenia-brevis-Wilson.pep --tblout Histone-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout Histone-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout Histone-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout Histone-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout Histone-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout Histone-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout Histone-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout Histone-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout Histone-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Litonotus-pictus-P1.pep --tblout Histone-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout Histone-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Lotharella-globosa-CCCM811.pep --tblout Histone-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout Histone-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout Histone-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout Histone-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout Histone-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout Histone-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout Histone-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout Histone-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Micromonas-sp-CCMP2099.pep --tblout Histone-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Micromonas-sp-NEPCC29.pep --tblout Histone-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Micromonas-sp-RCC472.pep --tblout Histone-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Minchinia-chitonis-Unknown.pep --tblout Histone-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout Histone-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout Histone-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout Histone-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout Histone-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout Histone-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout Histone-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout Histone-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout Histone-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout Histone-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout Histone-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout Histone-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout Histone-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout Histone-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout Histone-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout Histone-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Oxyrrhis-marina.pep --tblout Histone-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout Histone-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout Histone-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout Histone-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout Histone-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout Histone-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pavlova-sp-CCMP459.pep --tblout Histone-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout Histone-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout Histone-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout Histone-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout Histone-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout Histone-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout Histone-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout Histone-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout Histone-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pessonella-sp.-PRA-29.pep --tblout Histone-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout Histone-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout Histone-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout Histone-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout Histone-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Picochlorum-sp.-RCC944.pep --tblout Histone-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout Histone-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout Histone-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Platyophrya-macrostoma-WH.pep --tblout Histone-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout Histone-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout Histone-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout Histone-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout Histone-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout Histone-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout Histone-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Proboscia-alata-PI_D3.pep --tblout Histone-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout Histone-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout Histone-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout Histone-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout Histone-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Protocruzia-adherens-Boccale.pep --tblout Histone-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout Histone-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout Histone-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout Histone-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout Histone-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout Histone-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pteridomonas-danica-PT.pep --tblout Histone-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout Histone-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout Histone-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout Histone-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout Histone-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout Histone-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout Histone-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout Histone-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout Histone-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Rhodella-maculata-CCMP736.pep --tblout Histone-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Rhodomonas-lens-RHODO.pep --tblout Histone-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout Histone-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout Histone-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Rosalina-sp.-Unknown.pep --tblout Histone-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout Histone-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout Histone-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout Histone-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout Histone-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout Histone-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout Histone-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout Histone-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout Histone-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout Histone-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout Histone-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Sorites-sp.-Unknown.pep --tblout Histone-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout Histone-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout Histone-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout Histone-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout Histone-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout Histone-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Stichococcus-sp-RCC1054.pep --tblout Histone-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout Histone-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout Histone-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout Histone-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Strombidium-inclinatum-S3.pep --tblout Histone-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout Histone-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout Histone-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout Histone-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Symbiodinium-sp-C1.pep --tblout Histone-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Symbiodinium-sp-C15.pep --tblout Histone-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout Histone-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Symbiodinium-sp-Mp.pep --tblout Histone-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout Histone-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout Histone-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout Histone-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout Histone-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout Histone-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout Histone-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout Histone-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout Histone-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout Histone-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout Histone-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout Histone-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout Histone-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout Histone-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout Histone-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout Histone-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout Histone-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout Histone-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Tiarina-fusus-LIS.pep --tblout Histone-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout Histone-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Togula-jolla-CCCM-725.pep --tblout Histone-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Triceratium-dubium-CCMP147.pep --tblout Histone-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout Histone-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Undescribed-sp-CCMP2097.pep --tblout Histone-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Undescribed-sp-CCMP2098.pep --tblout Histone-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Undescribed-sp-CCMP2293.pep --tblout Histone-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Undescribed-sp-CCMP2436.pep --tblout Histone-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Undescribed-sp-D1.pep --tblout Histone-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout Histone-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout Histone-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Uronema-sp.-Bbcil.pep --tblout Histone-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout Histone-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout Histone-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout Histone-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout Histone-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout Histone-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.Histone.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout Histone_HNS-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout Histone_HNS-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout Histone_HNS-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout Histone_HNS-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout Histone_HNS-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Ammonia-sp.-Unknown.pep --tblout Histone_HNS-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout Histone_HNS-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout Histone_HNS-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Amphiprora-sp.pep --tblout Histone_HNS-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout Histone_HNS-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout Histone_HNS-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout Histone_HNS-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout Histone_HNS-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout Histone_HNS-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout Histone_HNS-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout Histone_HNS-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout Histone_HNS-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout Histone_HNS-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout Histone_HNS-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout Histone_HNS-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Azadinium-spinosum-3D9.pep --tblout Histone_HNS-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout Histone_HNS-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout Histone_HNS-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Bicosoecid-sp-ms1.pep --tblout Histone_HNS-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout Histone_HNS-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout Histone_HNS-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout Histone_HNS-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout Histone_HNS-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout Histone_HNS-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout Histone_HNS-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout Histone_HNS-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout Histone_HNS-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout Histone_HNS-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout Histone_HNS-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Ceratium-fusus-PA161109.pep --tblout Histone_HNS-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout Histone_HNS-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chaetoceros-curvisetus.pep --tblout Histone_HNS-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout Histone_HNS-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout Histone_HNS-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout Histone_HNS-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout Histone_HNS-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout Histone_HNS-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chromera-velia-CCMP2878.pep --tblout Histone_HNS-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout Histone_HNS-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout Histone_HNS-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout Histone_HNS-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout Histone_HNS-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout Histone_HNS-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout Histone_HNS-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout Histone_HNS-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout Histone_HNS-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout Histone_HNS-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout Histone_HNS-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout Histone_HNS-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout Histone_HNS-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Condylostoma-magnum-COL2.pep --tblout Histone_HNS-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Corethron-pennatum-L29A3.pep --tblout Histone_HNS-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout Histone_HNS-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout Histone_HNS-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout Histone_HNS-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout Histone_HNS-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout Histone_HNS-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout Histone_HNS-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout Histone_HNS-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout Histone_HNS-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout Histone_HNS-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout Histone_HNS-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout Histone_HNS-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Debaryomyces-hansenii-J26.pep --tblout Histone_HNS-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout Histone_HNS-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout Histone_HNS-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout Histone_HNS-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout Histone_HNS-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout Histone_HNS-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout Histone_HNS-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout Histone_HNS-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout Histone_HNS-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout Histone_HNS-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout Histone_HNS-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout Histone_HNS-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Emiliania-huxleyi-374.pep --tblout Histone_HNS-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Emiliania-huxleyi-379.pep --tblout Histone_HNS-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout Histone_HNS-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout Histone_HNS-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout Histone_HNS-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout Histone_HNS-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout Histone_HNS-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout Histone_HNS-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Euplotes-focardii-TN1.pep --tblout Histone_HNS-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout Histone_HNS-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout Histone_HNS-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout Histone_HNS-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout Histone_HNS-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout Histone_HNS-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout Histone_HNS-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout Histone_HNS-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout Histone_HNS-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout Histone_HNS-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Florenciella-parvula-RCC1693.pep --tblout Histone_HNS-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Florenciella-sp.-RCC1007.pep --tblout Histone_HNS-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout Histone_HNS-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout Histone_HNS-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout Histone_HNS-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout Histone_HNS-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout Histone_HNS-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout Histone_HNS-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout Histone_HNS-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout Histone_HNS-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout Histone_HNS-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout Histone_HNS-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout Histone_HNS-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout Histone_HNS-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout Histone_HNS-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout Histone_HNS-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout Histone_HNS-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Hanusia-phi-CCMP325.pep --tblout Histone_HNS-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout Histone_HNS-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout Histone_HNS-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout Histone_HNS-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout Histone_HNS-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout Histone_HNS-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout Histone_HNS-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout Histone_HNS-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout Histone_HNS-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout Histone_HNS-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout Histone_HNS-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Heterosigma-akashiwo-NB.pep --tblout Histone_HNS-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Imantonia-sp.-RCC918.pep --tblout Histone_HNS-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout Histone_HNS-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout Histone_HNS-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout Histone_HNS-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Karenia-brevis-CCMP2229.pep --tblout Histone_HNS-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Karenia-brevis-SP1.pep --tblout Histone_HNS-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Karenia-brevis-SP3.pep --tblout Histone_HNS-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Karenia-brevis-Wilson.pep --tblout Histone_HNS-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout Histone_HNS-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout Histone_HNS-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout Histone_HNS-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout Histone_HNS-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout Histone_HNS-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout Histone_HNS-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout Histone_HNS-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout Histone_HNS-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Litonotus-pictus-P1.pep --tblout Histone_HNS-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout Histone_HNS-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Lotharella-globosa-CCCM811.pep --tblout Histone_HNS-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout Histone_HNS-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout Histone_HNS-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout Histone_HNS-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout Histone_HNS-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout Histone_HNS-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout Histone_HNS-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout Histone_HNS-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Micromonas-sp-CCMP2099.pep --tblout Histone_HNS-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Micromonas-sp-NEPCC29.pep --tblout Histone_HNS-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Micromonas-sp-RCC472.pep --tblout Histone_HNS-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Minchinia-chitonis-Unknown.pep --tblout Histone_HNS-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout Histone_HNS-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout Histone_HNS-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout Histone_HNS-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout Histone_HNS-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout Histone_HNS-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout Histone_HNS-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout Histone_HNS-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout Histone_HNS-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout Histone_HNS-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout Histone_HNS-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout Histone_HNS-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout Histone_HNS-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout Histone_HNS-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout Histone_HNS-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout Histone_HNS-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Oxyrrhis-marina.pep --tblout Histone_HNS-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout Histone_HNS-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout Histone_HNS-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout Histone_HNS-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout Histone_HNS-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout Histone_HNS-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pavlova-sp-CCMP459.pep --tblout Histone_HNS-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout Histone_HNS-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout Histone_HNS-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout Histone_HNS-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout Histone_HNS-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout Histone_HNS-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout Histone_HNS-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout Histone_HNS-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout Histone_HNS-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pessonella-sp.-PRA-29.pep --tblout Histone_HNS-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout Histone_HNS-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout Histone_HNS-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout Histone_HNS-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout Histone_HNS-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Picochlorum-sp.-RCC944.pep --tblout Histone_HNS-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout Histone_HNS-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout Histone_HNS-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Platyophrya-macrostoma-WH.pep --tblout Histone_HNS-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout Histone_HNS-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout Histone_HNS-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout Histone_HNS-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout Histone_HNS-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout Histone_HNS-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout Histone_HNS-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Proboscia-alata-PI_D3.pep --tblout Histone_HNS-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout Histone_HNS-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout Histone_HNS-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout Histone_HNS-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout Histone_HNS-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Protocruzia-adherens-Boccale.pep --tblout Histone_HNS-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout Histone_HNS-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout Histone_HNS-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout Histone_HNS-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout Histone_HNS-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout Histone_HNS-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pteridomonas-danica-PT.pep --tblout Histone_HNS-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout Histone_HNS-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout Histone_HNS-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout Histone_HNS-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout Histone_HNS-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout Histone_HNS-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout Histone_HNS-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout Histone_HNS-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout Histone_HNS-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Rhodella-maculata-CCMP736.pep --tblout Histone_HNS-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Rhodomonas-lens-RHODO.pep --tblout Histone_HNS-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout Histone_HNS-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout Histone_HNS-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Rosalina-sp.-Unknown.pep --tblout Histone_HNS-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout Histone_HNS-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout Histone_HNS-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout Histone_HNS-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout Histone_HNS-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout Histone_HNS-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout Histone_HNS-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout Histone_HNS-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout Histone_HNS-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout Histone_HNS-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout Histone_HNS-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Sorites-sp.-Unknown.pep --tblout Histone_HNS-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout Histone_HNS-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout Histone_HNS-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout Histone_HNS-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout Histone_HNS-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout Histone_HNS-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Stichococcus-sp-RCC1054.pep --tblout Histone_HNS-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout Histone_HNS-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout Histone_HNS-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout Histone_HNS-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Strombidium-inclinatum-S3.pep --tblout Histone_HNS-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout Histone_HNS-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout Histone_HNS-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout Histone_HNS-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Symbiodinium-sp-C1.pep --tblout Histone_HNS-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Symbiodinium-sp-C15.pep --tblout Histone_HNS-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout Histone_HNS-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Symbiodinium-sp-Mp.pep --tblout Histone_HNS-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout Histone_HNS-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout Histone_HNS-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout Histone_HNS-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout Histone_HNS-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout Histone_HNS-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout Histone_HNS-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout Histone_HNS-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout Histone_HNS-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout Histone_HNS-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout Histone_HNS-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout Histone_HNS-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout Histone_HNS-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout Histone_HNS-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout Histone_HNS-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout Histone_HNS-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout Histone_HNS-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout Histone_HNS-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Tiarina-fusus-LIS.pep --tblout Histone_HNS-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout Histone_HNS-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Togula-jolla-CCCM-725.pep --tblout Histone_HNS-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Triceratium-dubium-CCMP147.pep --tblout Histone_HNS-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout Histone_HNS-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Undescribed-sp-CCMP2097.pep --tblout Histone_HNS-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Undescribed-sp-CCMP2098.pep --tblout Histone_HNS-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Undescribed-sp-CCMP2293.pep --tblout Histone_HNS-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Undescribed-sp-CCMP2436.pep --tblout Histone_HNS-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Undescribed-sp-D1.pep --tblout Histone_HNS-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout Histone_HNS-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout Histone_HNS-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Uronema-sp.-Bbcil.pep --tblout Histone_HNS-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout Histone_HNS-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout Histone_HNS-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout Histone_HNS-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout Histone_HNS-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Histone_HNS-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout Histone_HNS-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.Histone_HNS.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout HC2-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout HC2-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout HC2-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout HC2-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout HC2-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Ammonia-sp.-Unknown.pep --tblout HC2-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout HC2-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout HC2-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Amphiprora-sp.pep --tblout HC2-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout HC2-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout HC2-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout HC2-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout HC2-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout HC2-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout HC2-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout HC2-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout HC2-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout HC2-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout HC2-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout HC2-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Azadinium-spinosum-3D9.pep --tblout HC2-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout HC2-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout HC2-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Bicosoecid-sp-ms1.pep --tblout HC2-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout HC2-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout HC2-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout HC2-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout HC2-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout HC2-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout HC2-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout HC2-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout HC2-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout HC2-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout HC2-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Ceratium-fusus-PA161109.pep --tblout HC2-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout HC2-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chaetoceros-curvisetus.pep --tblout HC2-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout HC2-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout HC2-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout HC2-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout HC2-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout HC2-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chromera-velia-CCMP2878.pep --tblout HC2-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout HC2-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout HC2-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout HC2-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout HC2-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout HC2-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout HC2-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout HC2-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout HC2-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout HC2-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout HC2-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout HC2-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout HC2-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Condylostoma-magnum-COL2.pep --tblout HC2-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Corethron-pennatum-L29A3.pep --tblout HC2-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout HC2-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout HC2-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout HC2-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout HC2-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout HC2-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout HC2-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout HC2-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout HC2-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout HC2-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout HC2-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout HC2-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Debaryomyces-hansenii-J26.pep --tblout HC2-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout HC2-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout HC2-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout HC2-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout HC2-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout HC2-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout HC2-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout HC2-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout HC2-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout HC2-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout HC2-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout HC2-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Emiliania-huxleyi-374.pep --tblout HC2-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Emiliania-huxleyi-379.pep --tblout HC2-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout HC2-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout HC2-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout HC2-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout HC2-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout HC2-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout HC2-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Euplotes-focardii-TN1.pep --tblout HC2-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout HC2-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout HC2-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout HC2-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout HC2-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout HC2-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout HC2-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout HC2-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout HC2-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout HC2-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Florenciella-parvula-RCC1693.pep --tblout HC2-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Florenciella-sp.-RCC1007.pep --tblout HC2-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout HC2-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout HC2-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout HC2-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout HC2-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout HC2-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout HC2-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout HC2-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout HC2-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout HC2-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout HC2-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout HC2-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout HC2-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout HC2-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout HC2-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout HC2-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Hanusia-phi-CCMP325.pep --tblout HC2-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout HC2-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout HC2-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout HC2-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout HC2-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout HC2-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout HC2-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout HC2-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout HC2-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout HC2-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout HC2-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Heterosigma-akashiwo-NB.pep --tblout HC2-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Imantonia-sp.-RCC918.pep --tblout HC2-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout HC2-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout HC2-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout HC2-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Karenia-brevis-CCMP2229.pep --tblout HC2-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Karenia-brevis-SP1.pep --tblout HC2-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Karenia-brevis-SP3.pep --tblout HC2-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Karenia-brevis-Wilson.pep --tblout HC2-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout HC2-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout HC2-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout HC2-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout HC2-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout HC2-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout HC2-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout HC2-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout HC2-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Litonotus-pictus-P1.pep --tblout HC2-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout HC2-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Lotharella-globosa-CCCM811.pep --tblout HC2-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout HC2-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout HC2-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout HC2-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout HC2-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout HC2-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout HC2-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout HC2-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Micromonas-sp-CCMP2099.pep --tblout HC2-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Micromonas-sp-NEPCC29.pep --tblout HC2-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Micromonas-sp-RCC472.pep --tblout HC2-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Minchinia-chitonis-Unknown.pep --tblout HC2-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout HC2-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout HC2-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout HC2-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout HC2-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout HC2-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout HC2-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout HC2-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout HC2-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout HC2-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout HC2-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout HC2-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout HC2-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout HC2-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout HC2-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout HC2-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Oxyrrhis-marina.pep --tblout HC2-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout HC2-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout HC2-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout HC2-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout HC2-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout HC2-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pavlova-sp-CCMP459.pep --tblout HC2-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout HC2-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout HC2-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout HC2-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout HC2-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout HC2-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout HC2-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout HC2-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout HC2-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pessonella-sp.-PRA-29.pep --tblout HC2-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout HC2-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout HC2-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout HC2-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout HC2-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Picochlorum-sp.-RCC944.pep --tblout HC2-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout HC2-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout HC2-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Platyophrya-macrostoma-WH.pep --tblout HC2-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout HC2-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout HC2-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout HC2-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout HC2-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout HC2-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout HC2-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Proboscia-alata-PI_D3.pep --tblout HC2-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout HC2-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout HC2-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout HC2-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout HC2-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Protocruzia-adherens-Boccale.pep --tblout HC2-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout HC2-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout HC2-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout HC2-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout HC2-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout HC2-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pteridomonas-danica-PT.pep --tblout HC2-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout HC2-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout HC2-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout HC2-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout HC2-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout HC2-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout HC2-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout HC2-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout HC2-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Rhodella-maculata-CCMP736.pep --tblout HC2-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Rhodomonas-lens-RHODO.pep --tblout HC2-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout HC2-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout HC2-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Rosalina-sp.-Unknown.pep --tblout HC2-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout HC2-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout HC2-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout HC2-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout HC2-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout HC2-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout HC2-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout HC2-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout HC2-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout HC2-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout HC2-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Sorites-sp.-Unknown.pep --tblout HC2-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout HC2-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout HC2-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout HC2-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout HC2-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout HC2-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Stichococcus-sp-RCC1054.pep --tblout HC2-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout HC2-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout HC2-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout HC2-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Strombidium-inclinatum-S3.pep --tblout HC2-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout HC2-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout HC2-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout HC2-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Symbiodinium-sp-C1.pep --tblout HC2-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Symbiodinium-sp-C15.pep --tblout HC2-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout HC2-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Symbiodinium-sp-Mp.pep --tblout HC2-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout HC2-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout HC2-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout HC2-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout HC2-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout HC2-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout HC2-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout HC2-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout HC2-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout HC2-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout HC2-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout HC2-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout HC2-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout HC2-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout HC2-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout HC2-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout HC2-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout HC2-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Tiarina-fusus-LIS.pep --tblout HC2-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout HC2-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Togula-jolla-CCCM-725.pep --tblout HC2-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Triceratium-dubium-CCMP147.pep --tblout HC2-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout HC2-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Undescribed-sp-CCMP2097.pep --tblout HC2-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Undescribed-sp-CCMP2098.pep --tblout HC2-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Undescribed-sp-CCMP2293.pep --tblout HC2-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Undescribed-sp-CCMP2436.pep --tblout HC2-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Undescribed-sp-D1.pep --tblout HC2-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout HC2-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout HC2-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Uronema-sp.-Bbcil.pep --tblout HC2-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout HC2-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout HC2-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout HC2-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout HC2-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o HC2-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout HC2-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.HC2.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout Hc1-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout Hc1-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout Hc1-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout Hc1-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout Hc1-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Ammonia-sp.-Unknown.pep --tblout Hc1-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout Hc1-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout Hc1-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Amphiprora-sp.pep --tblout Hc1-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout Hc1-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout Hc1-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout Hc1-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout Hc1-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout Hc1-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout Hc1-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout Hc1-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout Hc1-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout Hc1-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout Hc1-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout Hc1-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Azadinium-spinosum-3D9.pep --tblout Hc1-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout Hc1-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout Hc1-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Bicosoecid-sp-ms1.pep --tblout Hc1-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout Hc1-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout Hc1-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout Hc1-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout Hc1-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout Hc1-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout Hc1-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout Hc1-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout Hc1-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout Hc1-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout Hc1-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Ceratium-fusus-PA161109.pep --tblout Hc1-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout Hc1-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chaetoceros-curvisetus.pep --tblout Hc1-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout Hc1-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout Hc1-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout Hc1-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout Hc1-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout Hc1-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chromera-velia-CCMP2878.pep --tblout Hc1-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout Hc1-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout Hc1-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout Hc1-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout Hc1-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout Hc1-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout Hc1-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout Hc1-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout Hc1-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout Hc1-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout Hc1-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout Hc1-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout Hc1-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Condylostoma-magnum-COL2.pep --tblout Hc1-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Corethron-pennatum-L29A3.pep --tblout Hc1-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout Hc1-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout Hc1-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout Hc1-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout Hc1-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout Hc1-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout Hc1-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout Hc1-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout Hc1-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout Hc1-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout Hc1-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout Hc1-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Debaryomyces-hansenii-J26.pep --tblout Hc1-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout Hc1-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout Hc1-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout Hc1-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout Hc1-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout Hc1-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout Hc1-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout Hc1-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout Hc1-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout Hc1-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout Hc1-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout Hc1-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Emiliania-huxleyi-374.pep --tblout Hc1-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Emiliania-huxleyi-379.pep --tblout Hc1-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout Hc1-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout Hc1-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout Hc1-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout Hc1-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout Hc1-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout Hc1-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Euplotes-focardii-TN1.pep --tblout Hc1-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout Hc1-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout Hc1-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout Hc1-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout Hc1-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout Hc1-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout Hc1-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout Hc1-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout Hc1-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout Hc1-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Florenciella-parvula-RCC1693.pep --tblout Hc1-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Florenciella-sp.-RCC1007.pep --tblout Hc1-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout Hc1-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout Hc1-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout Hc1-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout Hc1-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout Hc1-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout Hc1-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout Hc1-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout Hc1-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout Hc1-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout Hc1-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout Hc1-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout Hc1-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout Hc1-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout Hc1-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout Hc1-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Hanusia-phi-CCMP325.pep --tblout Hc1-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout Hc1-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout Hc1-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout Hc1-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout Hc1-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout Hc1-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout Hc1-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout Hc1-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout Hc1-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout Hc1-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout Hc1-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Heterosigma-akashiwo-NB.pep --tblout Hc1-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Imantonia-sp.-RCC918.pep --tblout Hc1-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout Hc1-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout Hc1-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout Hc1-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Karenia-brevis-CCMP2229.pep --tblout Hc1-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Karenia-brevis-SP1.pep --tblout Hc1-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Karenia-brevis-SP3.pep --tblout Hc1-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Karenia-brevis-Wilson.pep --tblout Hc1-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout Hc1-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout Hc1-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout Hc1-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout Hc1-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout Hc1-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout Hc1-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout Hc1-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout Hc1-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Litonotus-pictus-P1.pep --tblout Hc1-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout Hc1-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Lotharella-globosa-CCCM811.pep --tblout Hc1-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout Hc1-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout Hc1-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout Hc1-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout Hc1-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout Hc1-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout Hc1-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout Hc1-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Micromonas-sp-CCMP2099.pep --tblout Hc1-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Micromonas-sp-NEPCC29.pep --tblout Hc1-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Micromonas-sp-RCC472.pep --tblout Hc1-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Minchinia-chitonis-Unknown.pep --tblout Hc1-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout Hc1-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout Hc1-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout Hc1-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout Hc1-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout Hc1-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout Hc1-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout Hc1-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout Hc1-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout Hc1-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout Hc1-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout Hc1-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout Hc1-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout Hc1-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout Hc1-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout Hc1-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Oxyrrhis-marina.pep --tblout Hc1-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout Hc1-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout Hc1-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout Hc1-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout Hc1-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout Hc1-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pavlova-sp-CCMP459.pep --tblout Hc1-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout Hc1-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout Hc1-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout Hc1-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout Hc1-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout Hc1-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout Hc1-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout Hc1-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout Hc1-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pessonella-sp.-PRA-29.pep --tblout Hc1-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout Hc1-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout Hc1-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout Hc1-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout Hc1-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Picochlorum-sp.-RCC944.pep --tblout Hc1-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout Hc1-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout Hc1-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Platyophrya-macrostoma-WH.pep --tblout Hc1-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout Hc1-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout Hc1-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout Hc1-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout Hc1-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout Hc1-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout Hc1-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Proboscia-alata-PI_D3.pep --tblout Hc1-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout Hc1-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout Hc1-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout Hc1-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout Hc1-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Protocruzia-adherens-Boccale.pep --tblout Hc1-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout Hc1-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout Hc1-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout Hc1-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout Hc1-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout Hc1-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pteridomonas-danica-PT.pep --tblout Hc1-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout Hc1-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout Hc1-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout Hc1-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout Hc1-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout Hc1-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout Hc1-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout Hc1-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout Hc1-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Rhodella-maculata-CCMP736.pep --tblout Hc1-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Rhodomonas-lens-RHODO.pep --tblout Hc1-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout Hc1-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout Hc1-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Rosalina-sp.-Unknown.pep --tblout Hc1-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout Hc1-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout Hc1-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout Hc1-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout Hc1-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout Hc1-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout Hc1-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout Hc1-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout Hc1-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout Hc1-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout Hc1-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Sorites-sp.-Unknown.pep --tblout Hc1-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout Hc1-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout Hc1-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout Hc1-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout Hc1-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout Hc1-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Stichococcus-sp-RCC1054.pep --tblout Hc1-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout Hc1-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout Hc1-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout Hc1-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Strombidium-inclinatum-S3.pep --tblout Hc1-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout Hc1-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout Hc1-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout Hc1-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Symbiodinium-sp-C1.pep --tblout Hc1-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Symbiodinium-sp-C15.pep --tblout Hc1-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout Hc1-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Symbiodinium-sp-Mp.pep --tblout Hc1-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout Hc1-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout Hc1-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout Hc1-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout Hc1-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout Hc1-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout Hc1-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout Hc1-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout Hc1-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout Hc1-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout Hc1-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout Hc1-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout Hc1-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout Hc1-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout Hc1-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout Hc1-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout Hc1-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout Hc1-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Tiarina-fusus-LIS.pep --tblout Hc1-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout Hc1-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Togula-jolla-CCCM-725.pep --tblout Hc1-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Triceratium-dubium-CCMP147.pep --tblout Hc1-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout Hc1-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Undescribed-sp-CCMP2097.pep --tblout Hc1-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Undescribed-sp-CCMP2098.pep --tblout Hc1-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Undescribed-sp-CCMP2293.pep --tblout Hc1-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Undescribed-sp-CCMP2436.pep --tblout Hc1-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Undescribed-sp-D1.pep --tblout Hc1-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout Hc1-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout Hc1-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Uronema-sp.-Bbcil.pep --tblout Hc1-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout Hc1-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout Hc1-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout Hc1-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout Hc1-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o Hc1-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout Hc1-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.Hc1.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CBFD_NFYB_HMF-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CBFD_NFYB_HMF-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CBFD_NFYB_HMF-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CBFD_NFYB_HMF-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CBFD_NFYB_HMF-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Ammonia-sp.-Unknown.pep --tblout CBFD_NFYB_HMF-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CBFD_NFYB_HMF-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CBFD_NFYB_HMF-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Amphiprora-sp.pep --tblout CBFD_NFYB_HMF-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CBFD_NFYB_HMF-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CBFD_NFYB_HMF-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CBFD_NFYB_HMF-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CBFD_NFYB_HMF-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CBFD_NFYB_HMF-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CBFD_NFYB_HMF-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CBFD_NFYB_HMF-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CBFD_NFYB_HMF-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CBFD_NFYB_HMF-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CBFD_NFYB_HMF-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CBFD_NFYB_HMF-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Azadinium-spinosum-3D9.pep --tblout CBFD_NFYB_HMF-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CBFD_NFYB_HMF-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CBFD_NFYB_HMF-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Bicosoecid-sp-ms1.pep --tblout CBFD_NFYB_HMF-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CBFD_NFYB_HMF-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CBFD_NFYB_HMF-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CBFD_NFYB_HMF-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CBFD_NFYB_HMF-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CBFD_NFYB_HMF-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CBFD_NFYB_HMF-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CBFD_NFYB_HMF-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CBFD_NFYB_HMF-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CBFD_NFYB_HMF-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CBFD_NFYB_HMF-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Ceratium-fusus-PA161109.pep --tblout CBFD_NFYB_HMF-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CBFD_NFYB_HMF-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chaetoceros-curvisetus.pep --tblout CBFD_NFYB_HMF-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CBFD_NFYB_HMF-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CBFD_NFYB_HMF-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CBFD_NFYB_HMF-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CBFD_NFYB_HMF-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CBFD_NFYB_HMF-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chromera-velia-CCMP2878.pep --tblout CBFD_NFYB_HMF-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CBFD_NFYB_HMF-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CBFD_NFYB_HMF-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CBFD_NFYB_HMF-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CBFD_NFYB_HMF-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CBFD_NFYB_HMF-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CBFD_NFYB_HMF-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CBFD_NFYB_HMF-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CBFD_NFYB_HMF-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CBFD_NFYB_HMF-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CBFD_NFYB_HMF-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CBFD_NFYB_HMF-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CBFD_NFYB_HMF-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Condylostoma-magnum-COL2.pep --tblout CBFD_NFYB_HMF-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Corethron-pennatum-L29A3.pep --tblout CBFD_NFYB_HMF-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CBFD_NFYB_HMF-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CBFD_NFYB_HMF-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CBFD_NFYB_HMF-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CBFD_NFYB_HMF-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CBFD_NFYB_HMF-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CBFD_NFYB_HMF-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CBFD_NFYB_HMF-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CBFD_NFYB_HMF-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CBFD_NFYB_HMF-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CBFD_NFYB_HMF-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CBFD_NFYB_HMF-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CBFD_NFYB_HMF-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CBFD_NFYB_HMF-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CBFD_NFYB_HMF-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CBFD_NFYB_HMF-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CBFD_NFYB_HMF-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CBFD_NFYB_HMF-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CBFD_NFYB_HMF-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CBFD_NFYB_HMF-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CBFD_NFYB_HMF-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CBFD_NFYB_HMF-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CBFD_NFYB_HMF-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CBFD_NFYB_HMF-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Emiliania-huxleyi-374.pep --tblout CBFD_NFYB_HMF-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Emiliania-huxleyi-379.pep --tblout CBFD_NFYB_HMF-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CBFD_NFYB_HMF-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CBFD_NFYB_HMF-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CBFD_NFYB_HMF-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CBFD_NFYB_HMF-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CBFD_NFYB_HMF-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CBFD_NFYB_HMF-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Euplotes-focardii-TN1.pep --tblout CBFD_NFYB_HMF-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CBFD_NFYB_HMF-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CBFD_NFYB_HMF-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CBFD_NFYB_HMF-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CBFD_NFYB_HMF-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CBFD_NFYB_HMF-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CBFD_NFYB_HMF-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CBFD_NFYB_HMF-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CBFD_NFYB_HMF-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CBFD_NFYB_HMF-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CBFD_NFYB_HMF-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CBFD_NFYB_HMF-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CBFD_NFYB_HMF-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CBFD_NFYB_HMF-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CBFD_NFYB_HMF-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CBFD_NFYB_HMF-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CBFD_NFYB_HMF-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CBFD_NFYB_HMF-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CBFD_NFYB_HMF-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CBFD_NFYB_HMF-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CBFD_NFYB_HMF-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CBFD_NFYB_HMF-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CBFD_NFYB_HMF-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CBFD_NFYB_HMF-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CBFD_NFYB_HMF-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CBFD_NFYB_HMF-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CBFD_NFYB_HMF-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Hanusia-phi-CCMP325.pep --tblout CBFD_NFYB_HMF-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CBFD_NFYB_HMF-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CBFD_NFYB_HMF-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CBFD_NFYB_HMF-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CBFD_NFYB_HMF-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CBFD_NFYB_HMF-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CBFD_NFYB_HMF-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CBFD_NFYB_HMF-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CBFD_NFYB_HMF-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CBFD_NFYB_HMF-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CBFD_NFYB_HMF-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CBFD_NFYB_HMF-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Imantonia-sp.-RCC918.pep --tblout CBFD_NFYB_HMF-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CBFD_NFYB_HMF-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CBFD_NFYB_HMF-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CBFD_NFYB_HMF-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CBFD_NFYB_HMF-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Karenia-brevis-SP1.pep --tblout CBFD_NFYB_HMF-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Karenia-brevis-SP3.pep --tblout CBFD_NFYB_HMF-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Karenia-brevis-Wilson.pep --tblout CBFD_NFYB_HMF-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CBFD_NFYB_HMF-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CBFD_NFYB_HMF-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CBFD_NFYB_HMF-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CBFD_NFYB_HMF-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CBFD_NFYB_HMF-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CBFD_NFYB_HMF-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CBFD_NFYB_HMF-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CBFD_NFYB_HMF-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Litonotus-pictus-P1.pep --tblout CBFD_NFYB_HMF-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CBFD_NFYB_HMF-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CBFD_NFYB_HMF-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CBFD_NFYB_HMF-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CBFD_NFYB_HMF-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CBFD_NFYB_HMF-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CBFD_NFYB_HMF-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CBFD_NFYB_HMF-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CBFD_NFYB_HMF-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CBFD_NFYB_HMF-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CBFD_NFYB_HMF-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CBFD_NFYB_HMF-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Micromonas-sp-RCC472.pep --tblout CBFD_NFYB_HMF-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CBFD_NFYB_HMF-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CBFD_NFYB_HMF-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CBFD_NFYB_HMF-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CBFD_NFYB_HMF-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CBFD_NFYB_HMF-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CBFD_NFYB_HMF-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CBFD_NFYB_HMF-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CBFD_NFYB_HMF-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CBFD_NFYB_HMF-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CBFD_NFYB_HMF-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CBFD_NFYB_HMF-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CBFD_NFYB_HMF-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CBFD_NFYB_HMF-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CBFD_NFYB_HMF-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CBFD_NFYB_HMF-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CBFD_NFYB_HMF-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Oxyrrhis-marina.pep --tblout CBFD_NFYB_HMF-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CBFD_NFYB_HMF-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CBFD_NFYB_HMF-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CBFD_NFYB_HMF-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CBFD_NFYB_HMF-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CBFD_NFYB_HMF-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pavlova-sp-CCMP459.pep --tblout CBFD_NFYB_HMF-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CBFD_NFYB_HMF-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CBFD_NFYB_HMF-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CBFD_NFYB_HMF-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CBFD_NFYB_HMF-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CBFD_NFYB_HMF-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CBFD_NFYB_HMF-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CBFD_NFYB_HMF-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CBFD_NFYB_HMF-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CBFD_NFYB_HMF-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CBFD_NFYB_HMF-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CBFD_NFYB_HMF-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CBFD_NFYB_HMF-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CBFD_NFYB_HMF-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CBFD_NFYB_HMF-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CBFD_NFYB_HMF-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CBFD_NFYB_HMF-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CBFD_NFYB_HMF-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CBFD_NFYB_HMF-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CBFD_NFYB_HMF-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CBFD_NFYB_HMF-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CBFD_NFYB_HMF-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CBFD_NFYB_HMF-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CBFD_NFYB_HMF-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Proboscia-alata-PI_D3.pep --tblout CBFD_NFYB_HMF-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CBFD_NFYB_HMF-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CBFD_NFYB_HMF-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CBFD_NFYB_HMF-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CBFD_NFYB_HMF-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CBFD_NFYB_HMF-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CBFD_NFYB_HMF-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CBFD_NFYB_HMF-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CBFD_NFYB_HMF-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CBFD_NFYB_HMF-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CBFD_NFYB_HMF-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pteridomonas-danica-PT.pep --tblout CBFD_NFYB_HMF-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CBFD_NFYB_HMF-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CBFD_NFYB_HMF-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CBFD_NFYB_HMF-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CBFD_NFYB_HMF-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CBFD_NFYB_HMF-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CBFD_NFYB_HMF-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CBFD_NFYB_HMF-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CBFD_NFYB_HMF-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CBFD_NFYB_HMF-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CBFD_NFYB_HMF-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CBFD_NFYB_HMF-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CBFD_NFYB_HMF-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Rosalina-sp.-Unknown.pep --tblout CBFD_NFYB_HMF-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CBFD_NFYB_HMF-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CBFD_NFYB_HMF-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CBFD_NFYB_HMF-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CBFD_NFYB_HMF-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CBFD_NFYB_HMF-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CBFD_NFYB_HMF-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CBFD_NFYB_HMF-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CBFD_NFYB_HMF-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CBFD_NFYB_HMF-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CBFD_NFYB_HMF-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Sorites-sp.-Unknown.pep --tblout CBFD_NFYB_HMF-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CBFD_NFYB_HMF-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CBFD_NFYB_HMF-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CBFD_NFYB_HMF-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CBFD_NFYB_HMF-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CBFD_NFYB_HMF-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CBFD_NFYB_HMF-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CBFD_NFYB_HMF-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CBFD_NFYB_HMF-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CBFD_NFYB_HMF-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Strombidium-inclinatum-S3.pep --tblout CBFD_NFYB_HMF-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CBFD_NFYB_HMF-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CBFD_NFYB_HMF-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CBFD_NFYB_HMF-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Symbiodinium-sp-C1.pep --tblout CBFD_NFYB_HMF-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Symbiodinium-sp-C15.pep --tblout CBFD_NFYB_HMF-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CBFD_NFYB_HMF-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Symbiodinium-sp-Mp.pep --tblout CBFD_NFYB_HMF-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CBFD_NFYB_HMF-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CBFD_NFYB_HMF-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CBFD_NFYB_HMF-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CBFD_NFYB_HMF-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CBFD_NFYB_HMF-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CBFD_NFYB_HMF-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CBFD_NFYB_HMF-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Tiarina-fusus-LIS.pep --tblout CBFD_NFYB_HMF-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CBFD_NFYB_HMF-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Togula-jolla-CCCM-725.pep --tblout CBFD_NFYB_HMF-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CBFD_NFYB_HMF-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CBFD_NFYB_HMF-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CBFD_NFYB_HMF-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CBFD_NFYB_HMF-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CBFD_NFYB_HMF-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CBFD_NFYB_HMF-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Undescribed-sp-D1.pep --tblout CBFD_NFYB_HMF-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CBFD_NFYB_HMF-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CBFD_NFYB_HMF-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Uronema-sp.-Bbcil.pep --tblout CBFD_NFYB_HMF-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CBFD_NFYB_HMF-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CBFD_NFYB_HMF-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CBFD_NFYB_HMF-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CBFD_NFYB_HMF-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CBFD_NFYB_HMF-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CBFD_NFYB_HMF-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CBFD_NFYB_HMF.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-B_dimeris-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-B_dimeris-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-B_dimeris-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-B_dimeris-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-B_dimeris-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-B_dimeris-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-B_dimeris-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-B_dimeris-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Amphiprora-sp.pep --tblout CENP-B_dimeris-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-B_dimeris-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-B_dimeris-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-B_dimeris-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-B_dimeris-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-B_dimeris-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-B_dimeris-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-B_dimeris-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-B_dimeris-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-B_dimeris-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-B_dimeris-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-B_dimeris-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-B_dimeris-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-B_dimeris-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-B_dimeris-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-B_dimeris-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-B_dimeris-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-B_dimeris-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-B_dimeris-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-B_dimeris-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-B_dimeris-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-B_dimeris-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-B_dimeris-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-B_dimeris-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-B_dimeris-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-B_dimeris-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-B_dimeris-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-B_dimeris-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-B_dimeris-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-B_dimeris-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-B_dimeris-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-B_dimeris-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-B_dimeris-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-B_dimeris-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-B_dimeris-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-B_dimeris-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-B_dimeris-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-B_dimeris-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-B_dimeris-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-B_dimeris-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-B_dimeris-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-B_dimeris-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-B_dimeris-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-B_dimeris-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-B_dimeris-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-B_dimeris-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-B_dimeris-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-B_dimeris-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-B_dimeris-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-B_dimeris-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-B_dimeris-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-B_dimeris-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-B_dimeris-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-B_dimeris-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-B_dimeris-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-B_dimeris-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-B_dimeris-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-B_dimeris-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-B_dimeris-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-B_dimeris-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-B_dimeris-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-B_dimeris-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-B_dimeris-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-B_dimeris-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-B_dimeris-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-B_dimeris-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-B_dimeris-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-B_dimeris-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-B_dimeris-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-B_dimeris-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-B_dimeris-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-B_dimeris-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-B_dimeris-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-B_dimeris-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-B_dimeris-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-B_dimeris-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-B_dimeris-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-B_dimeris-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-B_dimeris-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-B_dimeris-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-B_dimeris-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-B_dimeris-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-B_dimeris-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-B_dimeris-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-B_dimeris-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-B_dimeris-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-B_dimeris-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-B_dimeris-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-B_dimeris-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-B_dimeris-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-B_dimeris-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-B_dimeris-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-B_dimeris-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-B_dimeris-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-B_dimeris-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-B_dimeris-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-B_dimeris-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-B_dimeris-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-B_dimeris-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-B_dimeris-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-B_dimeris-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-B_dimeris-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-B_dimeris-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-B_dimeris-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-B_dimeris-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-B_dimeris-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-B_dimeris-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-B_dimeris-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-B_dimeris-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-B_dimeris-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-B_dimeris-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-B_dimeris-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-B_dimeris-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-B_dimeris-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-B_dimeris-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-B_dimeris-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-B_dimeris-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-B_dimeris-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-B_dimeris-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-B_dimeris-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-B_dimeris-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-B_dimeris-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-B_dimeris-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-B_dimeris-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-B_dimeris-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-B_dimeris-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-B_dimeris-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-B_dimeris-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-B_dimeris-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-B_dimeris-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-B_dimeris-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-B_dimeris-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-B_dimeris-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-B_dimeris-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-B_dimeris-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-B_dimeris-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-B_dimeris-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-B_dimeris-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-B_dimeris-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-B_dimeris-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-B_dimeris-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-B_dimeris-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-B_dimeris-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-B_dimeris-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-B_dimeris-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-B_dimeris-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-B_dimeris-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-B_dimeris-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-B_dimeris-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-B_dimeris-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-B_dimeris-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-B_dimeris-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-B_dimeris-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-B_dimeris-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-B_dimeris-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-B_dimeris-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-B_dimeris-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-B_dimeris-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-B_dimeris-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-B_dimeris-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-B_dimeris-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-B_dimeris-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-B_dimeris-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-B_dimeris-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Oxyrrhis-marina.pep --tblout CENP-B_dimeris-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-B_dimeris-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-B_dimeris-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-B_dimeris-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-B_dimeris-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-B_dimeris-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-B_dimeris-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-B_dimeris-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-B_dimeris-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-B_dimeris-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-B_dimeris-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-B_dimeris-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-B_dimeris-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-B_dimeris-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-B_dimeris-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-B_dimeris-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-B_dimeris-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-B_dimeris-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-B_dimeris-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-B_dimeris-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-B_dimeris-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-B_dimeris-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-B_dimeris-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-B_dimeris-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-B_dimeris-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-B_dimeris-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-B_dimeris-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-B_dimeris-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-B_dimeris-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-B_dimeris-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-B_dimeris-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-B_dimeris-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-B_dimeris-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-B_dimeris-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-B_dimeris-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-B_dimeris-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-B_dimeris-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-B_dimeris-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-B_dimeris-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-B_dimeris-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-B_dimeris-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-B_dimeris-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-B_dimeris-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-B_dimeris-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-B_dimeris-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-B_dimeris-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-B_dimeris-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-B_dimeris-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-B_dimeris-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-B_dimeris-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-B_dimeris-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-B_dimeris-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-B_dimeris-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-B_dimeris-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-B_dimeris-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-B_dimeris-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-B_dimeris-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-B_dimeris-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-B_dimeris-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-B_dimeris-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-B_dimeris-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-B_dimeris-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-B_dimeris-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-B_dimeris-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-B_dimeris-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-B_dimeris-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-B_dimeris-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-B_dimeris-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-B_dimeris-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-B_dimeris-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-B_dimeris-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-B_dimeris-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-B_dimeris-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-B_dimeris-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-B_dimeris-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-B_dimeris-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-B_dimeris-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-B_dimeris-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-B_dimeris-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-B_dimeris-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-B_dimeris-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-B_dimeris-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-B_dimeris-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-B_dimeris-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-B_dimeris-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-B_dimeris-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-B_dimeris-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-B_dimeris-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-B_dimeris-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-B_dimeris-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-B_dimeris-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-B_dimeris-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-B_dimeris-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-B_dimeris-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-B_dimeris-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-B_dimeris-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-B_dimeris-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-B_dimeris-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-B_dimeris-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-B_dimeris-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-B_dimeris-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-B_dimeris-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-B_dimeris-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-B_dimeris-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-B_dimeris-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-B_dimeris-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-B_dimeris-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-B_dimeris-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-B_dimeris-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Undescribed-sp-D1.pep --tblout CENP-B_dimeris-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-B_dimeris-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-B_dimeris-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-B_dimeris-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-B_dimeris-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-B_dimeris-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-B_dimeris-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-B_dimeris-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_dimeris-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-B_dimeris-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-B_dimeris.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-B_N-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-B_N-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-B_N-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-B_N-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-B_N-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-B_N-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-B_N-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-B_N-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Amphiprora-sp.pep --tblout CENP-B_N-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-B_N-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-B_N-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-B_N-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-B_N-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-B_N-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-B_N-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-B_N-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-B_N-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-B_N-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-B_N-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-B_N-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-B_N-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-B_N-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-B_N-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-B_N-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-B_N-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-B_N-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-B_N-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-B_N-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-B_N-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-B_N-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-B_N-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-B_N-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-B_N-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-B_N-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-B_N-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-B_N-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-B_N-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-B_N-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-B_N-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-B_N-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-B_N-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-B_N-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-B_N-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-B_N-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-B_N-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-B_N-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-B_N-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-B_N-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-B_N-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-B_N-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-B_N-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-B_N-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-B_N-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-B_N-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-B_N-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-B_N-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-B_N-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-B_N-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-B_N-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-B_N-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-B_N-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-B_N-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-B_N-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-B_N-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-B_N-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-B_N-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-B_N-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-B_N-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-B_N-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-B_N-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-B_N-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-B_N-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-B_N-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-B_N-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-B_N-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-B_N-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-B_N-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-B_N-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-B_N-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-B_N-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-B_N-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-B_N-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-B_N-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-B_N-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-B_N-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-B_N-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-B_N-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-B_N-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-B_N-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-B_N-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-B_N-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-B_N-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-B_N-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-B_N-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-B_N-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-B_N-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-B_N-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-B_N-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-B_N-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-B_N-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-B_N-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-B_N-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-B_N-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-B_N-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-B_N-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-B_N-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-B_N-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-B_N-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-B_N-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-B_N-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-B_N-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-B_N-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-B_N-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-B_N-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-B_N-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-B_N-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-B_N-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-B_N-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-B_N-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-B_N-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-B_N-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-B_N-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-B_N-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-B_N-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-B_N-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-B_N-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-B_N-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-B_N-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-B_N-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-B_N-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-B_N-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-B_N-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-B_N-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-B_N-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-B_N-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-B_N-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-B_N-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-B_N-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-B_N-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-B_N-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-B_N-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-B_N-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-B_N-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-B_N-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-B_N-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-B_N-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-B_N-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-B_N-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-B_N-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-B_N-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-B_N-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-B_N-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-B_N-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-B_N-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-B_N-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-B_N-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-B_N-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-B_N-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-B_N-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-B_N-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-B_N-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-B_N-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-B_N-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-B_N-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-B_N-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-B_N-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-B_N-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-B_N-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-B_N-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-B_N-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-B_N-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-B_N-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Oxyrrhis-marina.pep --tblout CENP-B_N-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-B_N-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-B_N-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-B_N-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-B_N-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-B_N-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-B_N-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-B_N-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-B_N-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-B_N-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-B_N-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-B_N-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-B_N-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-B_N-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-B_N-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-B_N-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-B_N-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-B_N-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-B_N-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-B_N-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-B_N-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-B_N-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-B_N-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-B_N-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-B_N-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-B_N-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-B_N-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-B_N-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-B_N-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-B_N-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-B_N-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-B_N-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-B_N-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-B_N-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-B_N-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-B_N-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-B_N-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-B_N-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-B_N-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-B_N-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-B_N-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-B_N-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-B_N-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-B_N-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-B_N-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-B_N-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-B_N-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-B_N-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-B_N-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-B_N-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-B_N-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-B_N-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-B_N-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-B_N-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-B_N-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-B_N-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-B_N-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-B_N-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-B_N-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-B_N-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-B_N-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-B_N-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-B_N-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-B_N-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-B_N-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-B_N-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-B_N-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-B_N-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-B_N-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-B_N-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-B_N-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-B_N-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-B_N-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-B_N-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-B_N-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-B_N-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-B_N-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-B_N-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-B_N-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-B_N-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-B_N-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-B_N-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-B_N-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-B_N-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-B_N-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-B_N-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-B_N-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-B_N-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-B_N-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-B_N-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-B_N-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-B_N-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-B_N-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-B_N-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-B_N-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-B_N-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-B_N-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-B_N-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-B_N-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-B_N-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-B_N-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-B_N-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-B_N-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-B_N-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-B_N-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-B_N-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-B_N-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-B_N-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-B_N-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Undescribed-sp-D1.pep --tblout CENP-B_N-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-B_N-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-B_N-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-B_N-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-B_N-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-B_N-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-B_N-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-B_N-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-B_N-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-B_N-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-B_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-C_C-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-C_C-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-C_C-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-C_C-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-C_C-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-C_C-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-C_C-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-C_C-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Amphiprora-sp.pep --tblout CENP-C_C-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-C_C-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-C_C-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-C_C-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-C_C-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-C_C-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-C_C-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-C_C-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-C_C-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-C_C-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-C_C-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-C_C-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-C_C-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-C_C-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-C_C-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-C_C-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-C_C-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-C_C-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-C_C-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-C_C-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-C_C-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-C_C-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-C_C-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-C_C-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-C_C-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-C_C-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-C_C-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-C_C-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-C_C-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-C_C-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-C_C-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-C_C-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-C_C-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-C_C-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-C_C-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-C_C-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-C_C-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-C_C-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-C_C-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-C_C-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-C_C-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-C_C-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-C_C-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-C_C-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-C_C-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-C_C-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-C_C-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-C_C-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-C_C-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-C_C-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-C_C-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-C_C-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-C_C-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-C_C-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-C_C-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-C_C-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-C_C-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-C_C-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-C_C-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-C_C-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-C_C-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-C_C-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-C_C-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-C_C-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-C_C-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-C_C-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-C_C-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-C_C-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-C_C-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-C_C-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-C_C-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-C_C-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-C_C-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-C_C-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-C_C-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-C_C-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-C_C-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-C_C-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-C_C-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-C_C-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-C_C-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-C_C-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-C_C-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-C_C-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-C_C-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-C_C-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-C_C-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-C_C-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-C_C-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-C_C-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-C_C-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-C_C-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-C_C-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-C_C-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-C_C-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-C_C-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-C_C-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-C_C-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-C_C-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-C_C-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-C_C-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-C_C-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-C_C-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-C_C-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-C_C-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-C_C-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-C_C-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-C_C-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-C_C-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-C_C-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-C_C-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-C_C-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-C_C-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-C_C-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-C_C-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-C_C-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-C_C-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-C_C-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-C_C-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-C_C-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-C_C-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-C_C-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-C_C-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-C_C-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-C_C-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-C_C-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-C_C-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-C_C-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-C_C-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-C_C-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-C_C-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-C_C-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-C_C-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-C_C-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-C_C-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-C_C-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-C_C-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-C_C-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-C_C-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-C_C-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-C_C-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-C_C-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-C_C-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-C_C-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-C_C-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-C_C-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-C_C-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-C_C-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-C_C-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-C_C-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-C_C-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-C_C-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-C_C-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-C_C-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-C_C-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-C_C-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-C_C-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-C_C-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-C_C-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-C_C-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-C_C-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-C_C-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-C_C-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-C_C-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Oxyrrhis-marina.pep --tblout CENP-C_C-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-C_C-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-C_C-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-C_C-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-C_C-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-C_C-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-C_C-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-C_C-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-C_C-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-C_C-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-C_C-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-C_C-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-C_C-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-C_C-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-C_C-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-C_C-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-C_C-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-C_C-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-C_C-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-C_C-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-C_C-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-C_C-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-C_C-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-C_C-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-C_C-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-C_C-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-C_C-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-C_C-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-C_C-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-C_C-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-C_C-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-C_C-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-C_C-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-C_C-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-C_C-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-C_C-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-C_C-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-C_C-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-C_C-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-C_C-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-C_C-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-C_C-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-C_C-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-C_C-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-C_C-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-C_C-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-C_C-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-C_C-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-C_C-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-C_C-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-C_C-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-C_C-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-C_C-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-C_C-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-C_C-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-C_C-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-C_C-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-C_C-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-C_C-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-C_C-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-C_C-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-C_C-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-C_C-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-C_C-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-C_C-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-C_C-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-C_C-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-C_C-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-C_C-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-C_C-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-C_C-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-C_C-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-C_C-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-C_C-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-C_C-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-C_C-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-C_C-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-C_C-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-C_C-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-C_C-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-C_C-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-C_C-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-C_C-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-C_C-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-C_C-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-C_C-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-C_C-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-C_C-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-C_C-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-C_C-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-C_C-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-C_C-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-C_C-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-C_C-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-C_C-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-C_C-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-C_C-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-C_C-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-C_C-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-C_C-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-C_C-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-C_C-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-C_C-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-C_C-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-C_C-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-C_C-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-C_C-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-C_C-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-C_C-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Undescribed-sp-D1.pep --tblout CENP-C_C-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-C_C-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-C_C-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-C_C-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-C_C-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-C_C-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-C_C-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-C_C-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_C-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-C_C-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-C_C.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP_C_N-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP_C_N-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP_C_N-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP_C_N-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP_C_N-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP_C_N-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP_C_N-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP_C_N-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Amphiprora-sp.pep --tblout CENP_C_N-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP_C_N-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP_C_N-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP_C_N-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP_C_N-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP_C_N-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP_C_N-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP_C_N-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP_C_N-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP_C_N-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP_C_N-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP_C_N-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP_C_N-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP_C_N-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP_C_N-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP_C_N-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP_C_N-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP_C_N-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP_C_N-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP_C_N-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP_C_N-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP_C_N-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP_C_N-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP_C_N-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP_C_N-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP_C_N-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP_C_N-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP_C_N-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP_C_N-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP_C_N-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP_C_N-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP_C_N-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP_C_N-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP_C_N-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP_C_N-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP_C_N-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP_C_N-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP_C_N-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP_C_N-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP_C_N-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP_C_N-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP_C_N-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP_C_N-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP_C_N-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP_C_N-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP_C_N-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP_C_N-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP_C_N-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP_C_N-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP_C_N-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP_C_N-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP_C_N-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP_C_N-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP_C_N-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP_C_N-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP_C_N-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP_C_N-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP_C_N-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP_C_N-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP_C_N-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP_C_N-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP_C_N-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP_C_N-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP_C_N-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP_C_N-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP_C_N-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP_C_N-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP_C_N-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP_C_N-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP_C_N-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP_C_N-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP_C_N-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP_C_N-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP_C_N-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP_C_N-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP_C_N-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP_C_N-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP_C_N-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP_C_N-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP_C_N-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP_C_N-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP_C_N-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP_C_N-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP_C_N-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP_C_N-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP_C_N-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP_C_N-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP_C_N-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP_C_N-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP_C_N-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP_C_N-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP_C_N-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP_C_N-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP_C_N-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP_C_N-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP_C_N-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP_C_N-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP_C_N-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP_C_N-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP_C_N-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP_C_N-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP_C_N-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP_C_N-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP_C_N-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP_C_N-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP_C_N-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP_C_N-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP_C_N-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP_C_N-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP_C_N-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP_C_N-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP_C_N-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP_C_N-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP_C_N-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP_C_N-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP_C_N-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP_C_N-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP_C_N-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP_C_N-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP_C_N-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP_C_N-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP_C_N-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP_C_N-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP_C_N-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Karenia-brevis-SP1.pep --tblout CENP_C_N-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Karenia-brevis-SP3.pep --tblout CENP_C_N-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP_C_N-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP_C_N-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP_C_N-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP_C_N-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP_C_N-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP_C_N-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP_C_N-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP_C_N-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP_C_N-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Litonotus-pictus-P1.pep --tblout CENP_C_N-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP_C_N-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP_C_N-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP_C_N-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP_C_N-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP_C_N-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP_C_N-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP_C_N-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP_C_N-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP_C_N-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP_C_N-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP_C_N-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP_C_N-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP_C_N-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP_C_N-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP_C_N-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP_C_N-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP_C_N-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP_C_N-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP_C_N-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP_C_N-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP_C_N-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP_C_N-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP_C_N-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP_C_N-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP_C_N-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP_C_N-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP_C_N-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP_C_N-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Oxyrrhis-marina.pep --tblout CENP_C_N-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP_C_N-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP_C_N-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP_C_N-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP_C_N-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP_C_N-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP_C_N-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP_C_N-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP_C_N-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP_C_N-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP_C_N-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP_C_N-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP_C_N-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP_C_N-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP_C_N-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP_C_N-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP_C_N-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP_C_N-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP_C_N-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP_C_N-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP_C_N-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP_C_N-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP_C_N-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP_C_N-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP_C_N-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP_C_N-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP_C_N-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP_C_N-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP_C_N-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP_C_N-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP_C_N-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP_C_N-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP_C_N-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP_C_N-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP_C_N-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP_C_N-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP_C_N-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP_C_N-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP_C_N-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP_C_N-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP_C_N-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP_C_N-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP_C_N-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP_C_N-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP_C_N-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP_C_N-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP_C_N-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP_C_N-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP_C_N-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP_C_N-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP_C_N-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP_C_N-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP_C_N-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP_C_N-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP_C_N-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP_C_N-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP_C_N-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP_C_N-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP_C_N-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP_C_N-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP_C_N-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP_C_N-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP_C_N-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP_C_N-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP_C_N-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP_C_N-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP_C_N-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP_C_N-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP_C_N-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP_C_N-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP_C_N-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP_C_N-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP_C_N-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP_C_N-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP_C_N-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP_C_N-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP_C_N-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP_C_N-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP_C_N-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP_C_N-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP_C_N-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP_C_N-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP_C_N-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP_C_N-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP_C_N-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP_C_N-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP_C_N-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP_C_N-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP_C_N-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP_C_N-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP_C_N-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP_C_N-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP_C_N-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP_C_N-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP_C_N-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP_C_N-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP_C_N-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP_C_N-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP_C_N-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP_C_N-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP_C_N-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP_C_N-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP_C_N-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP_C_N-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP_C_N-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP_C_N-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP_C_N-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP_C_N-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP_C_N-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Undescribed-sp-D1.pep --tblout CENP_C_N-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP_C_N-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP_C_N-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP_C_N-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP_C_N-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP_C_N-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP_C_N-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP_C_N-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP_C_N-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP_C_N-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP_C_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-C_mid-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-C_mid-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-C_mid-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-C_mid-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-C_mid-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-C_mid-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-C_mid-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-C_mid-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Amphiprora-sp.pep --tblout CENP-C_mid-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-C_mid-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-C_mid-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-C_mid-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-C_mid-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-C_mid-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-C_mid-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-C_mid-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-C_mid-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-C_mid-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-C_mid-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-C_mid-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-C_mid-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-C_mid-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-C_mid-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-C_mid-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-C_mid-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-C_mid-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-C_mid-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-C_mid-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-C_mid-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-C_mid-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-C_mid-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-C_mid-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-C_mid-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-C_mid-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-C_mid-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-C_mid-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-C_mid-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-C_mid-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-C_mid-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-C_mid-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-C_mid-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-C_mid-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-C_mid-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-C_mid-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-C_mid-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-C_mid-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-C_mid-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-C_mid-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-C_mid-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-C_mid-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-C_mid-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-C_mid-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-C_mid-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-C_mid-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-C_mid-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-C_mid-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-C_mid-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-C_mid-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-C_mid-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-C_mid-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-C_mid-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-C_mid-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-C_mid-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-C_mid-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-C_mid-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-C_mid-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-C_mid-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-C_mid-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-C_mid-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-C_mid-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-C_mid-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-C_mid-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-C_mid-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-C_mid-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-C_mid-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-C_mid-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-C_mid-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-C_mid-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-C_mid-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-C_mid-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-C_mid-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-C_mid-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-C_mid-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-C_mid-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-C_mid-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-C_mid-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-C_mid-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-C_mid-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-C_mid-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-C_mid-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-C_mid-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-C_mid-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-C_mid-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-C_mid-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-C_mid-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-C_mid-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-C_mid-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-C_mid-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-C_mid-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-C_mid-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-C_mid-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-C_mid-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-C_mid-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-C_mid-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-C_mid-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-C_mid-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-C_mid-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-C_mid-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-C_mid-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-C_mid-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-C_mid-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-C_mid-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-C_mid-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-C_mid-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-C_mid-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-C_mid-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-C_mid-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-C_mid-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-C_mid-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-C_mid-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-C_mid-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-C_mid-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-C_mid-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-C_mid-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-C_mid-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-C_mid-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-C_mid-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-C_mid-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-C_mid-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-C_mid-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-C_mid-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-C_mid-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-C_mid-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-C_mid-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-C_mid-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-C_mid-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-C_mid-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-C_mid-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-C_mid-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-C_mid-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-C_mid-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-C_mid-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-C_mid-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-C_mid-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-C_mid-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-C_mid-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-C_mid-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-C_mid-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-C_mid-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-C_mid-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-C_mid-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-C_mid-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-C_mid-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-C_mid-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-C_mid-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-C_mid-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-C_mid-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-C_mid-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-C_mid-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-C_mid-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-C_mid-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-C_mid-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-C_mid-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-C_mid-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-C_mid-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-C_mid-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-C_mid-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-C_mid-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-C_mid-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-C_mid-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-C_mid-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-C_mid-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Oxyrrhis-marina.pep --tblout CENP-C_mid-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-C_mid-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-C_mid-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-C_mid-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-C_mid-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-C_mid-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-C_mid-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-C_mid-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-C_mid-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-C_mid-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-C_mid-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-C_mid-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-C_mid-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-C_mid-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-C_mid-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-C_mid-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-C_mid-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-C_mid-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-C_mid-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-C_mid-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-C_mid-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-C_mid-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-C_mid-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-C_mid-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-C_mid-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-C_mid-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-C_mid-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-C_mid-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-C_mid-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-C_mid-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-C_mid-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-C_mid-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-C_mid-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-C_mid-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-C_mid-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-C_mid-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-C_mid-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-C_mid-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-C_mid-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-C_mid-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-C_mid-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-C_mid-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-C_mid-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-C_mid-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-C_mid-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-C_mid-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-C_mid-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-C_mid-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-C_mid-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-C_mid-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-C_mid-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-C_mid-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-C_mid-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-C_mid-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-C_mid-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-C_mid-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-C_mid-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-C_mid-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-C_mid-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-C_mid-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-C_mid-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-C_mid-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-C_mid-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-C_mid-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-C_mid-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-C_mid-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-C_mid-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-C_mid-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-C_mid-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-C_mid-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-C_mid-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-C_mid-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-C_mid-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-C_mid-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-C_mid-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-C_mid-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-C_mid-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-C_mid-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-C_mid-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-C_mid-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-C_mid-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-C_mid-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-C_mid-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-C_mid-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-C_mid-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-C_mid-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-C_mid-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-C_mid-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-C_mid-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-C_mid-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-C_mid-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-C_mid-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-C_mid-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-C_mid-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-C_mid-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-C_mid-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-C_mid-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-C_mid-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-C_mid-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-C_mid-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-C_mid-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-C_mid-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-C_mid-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-C_mid-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-C_mid-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-C_mid-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-C_mid-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-C_mid-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-C_mid-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Undescribed-sp-D1.pep --tblout CENP-C_mid-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-C_mid-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-C_mid-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-C_mid-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-C_mid-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-C_mid-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-C_mid-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-C_mid-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-C_mid-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-C_mid-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-C_mid.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Amphiprora-sp.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Oxyrrhis-marina.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-D1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_C_Rb_bdg-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-F_C_Rb_bdg-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-F_C_Rb_bdg.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-F_leu_zip-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-F_leu_zip-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-F_leu_zip-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-F_leu_zip-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-F_leu_zip-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-F_leu_zip-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-F_leu_zip-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-F_leu_zip-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Amphiprora-sp.pep --tblout CENP-F_leu_zip-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-F_leu_zip-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-F_leu_zip-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-F_leu_zip-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-F_leu_zip-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-F_leu_zip-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-F_leu_zip-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-F_leu_zip-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-F_leu_zip-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-F_leu_zip-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-F_leu_zip-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-F_leu_zip-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-F_leu_zip-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-F_leu_zip-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-F_leu_zip-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-F_leu_zip-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-F_leu_zip-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-F_leu_zip-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-F_leu_zip-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-F_leu_zip-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-F_leu_zip-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-F_leu_zip-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-F_leu_zip-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-F_leu_zip-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-F_leu_zip-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-F_leu_zip-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-F_leu_zip-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-F_leu_zip-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-F_leu_zip-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-F_leu_zip-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-F_leu_zip-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-F_leu_zip-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-F_leu_zip-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-F_leu_zip-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-F_leu_zip-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-F_leu_zip-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-F_leu_zip-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-F_leu_zip-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-F_leu_zip-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-F_leu_zip-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-F_leu_zip-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-F_leu_zip-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-F_leu_zip-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-F_leu_zip-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-F_leu_zip-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-F_leu_zip-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-F_leu_zip-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-F_leu_zip-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-F_leu_zip-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-F_leu_zip-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-F_leu_zip-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-F_leu_zip-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-F_leu_zip-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-F_leu_zip-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-F_leu_zip-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-F_leu_zip-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-F_leu_zip-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-F_leu_zip-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-F_leu_zip-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-F_leu_zip-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-F_leu_zip-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-F_leu_zip-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-F_leu_zip-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-F_leu_zip-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-F_leu_zip-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-F_leu_zip-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-F_leu_zip-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-F_leu_zip-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-F_leu_zip-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-F_leu_zip-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-F_leu_zip-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-F_leu_zip-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-F_leu_zip-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-F_leu_zip-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-F_leu_zip-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-F_leu_zip-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-F_leu_zip-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-F_leu_zip-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-F_leu_zip-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-F_leu_zip-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-F_leu_zip-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-F_leu_zip-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-F_leu_zip-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-F_leu_zip-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-F_leu_zip-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-F_leu_zip-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-F_leu_zip-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-F_leu_zip-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-F_leu_zip-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-F_leu_zip-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-F_leu_zip-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-F_leu_zip-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-F_leu_zip-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-F_leu_zip-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-F_leu_zip-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-F_leu_zip-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-F_leu_zip-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-F_leu_zip-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-F_leu_zip-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-F_leu_zip-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-F_leu_zip-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-F_leu_zip-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-F_leu_zip-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-F_leu_zip-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-F_leu_zip-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-F_leu_zip-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-F_leu_zip-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-F_leu_zip-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-F_leu_zip-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-F_leu_zip-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-F_leu_zip-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-F_leu_zip-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-F_leu_zip-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-F_leu_zip-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-F_leu_zip-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-F_leu_zip-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-F_leu_zip-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-F_leu_zip-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-F_leu_zip-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-F_leu_zip-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-F_leu_zip-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-F_leu_zip-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-F_leu_zip-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-F_leu_zip-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-F_leu_zip-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-F_leu_zip-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-F_leu_zip-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-F_leu_zip-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-F_leu_zip-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-F_leu_zip-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-F_leu_zip-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-F_leu_zip-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-F_leu_zip-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-F_leu_zip-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-F_leu_zip-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-F_leu_zip-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-F_leu_zip-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-F_leu_zip-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-F_leu_zip-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-F_leu_zip-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-F_leu_zip-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-F_leu_zip-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-F_leu_zip-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-F_leu_zip-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-F_leu_zip-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-F_leu_zip-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-F_leu_zip-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-F_leu_zip-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-F_leu_zip-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-F_leu_zip-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-F_leu_zip-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-F_leu_zip-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-F_leu_zip-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-F_leu_zip-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-F_leu_zip-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-F_leu_zip-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-F_leu_zip-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-F_leu_zip-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-F_leu_zip-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-F_leu_zip-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-F_leu_zip-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-F_leu_zip-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-F_leu_zip-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-F_leu_zip-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Oxyrrhis-marina.pep --tblout CENP-F_leu_zip-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-F_leu_zip-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-F_leu_zip-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-F_leu_zip-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-F_leu_zip-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-F_leu_zip-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-F_leu_zip-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-F_leu_zip-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-F_leu_zip-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-F_leu_zip-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-F_leu_zip-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-F_leu_zip-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-F_leu_zip-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-F_leu_zip-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-F_leu_zip-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-F_leu_zip-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-F_leu_zip-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-F_leu_zip-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-F_leu_zip-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-F_leu_zip-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-F_leu_zip-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-F_leu_zip-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-F_leu_zip-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-F_leu_zip-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-F_leu_zip-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-F_leu_zip-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-F_leu_zip-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-F_leu_zip-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-F_leu_zip-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-F_leu_zip-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-F_leu_zip-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-F_leu_zip-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-F_leu_zip-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-F_leu_zip-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-F_leu_zip-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-F_leu_zip-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-F_leu_zip-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-F_leu_zip-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-F_leu_zip-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-F_leu_zip-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-F_leu_zip-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-F_leu_zip-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-F_leu_zip-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-F_leu_zip-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-F_leu_zip-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-F_leu_zip-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-F_leu_zip-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-F_leu_zip-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-F_leu_zip-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-F_leu_zip-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-F_leu_zip-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-F_leu_zip-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-F_leu_zip-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-F_leu_zip-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-F_leu_zip-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-F_leu_zip-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-F_leu_zip-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-F_leu_zip-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-F_leu_zip-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-F_leu_zip-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-F_leu_zip-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-F_leu_zip-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-F_leu_zip-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-F_leu_zip-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-F_leu_zip-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-F_leu_zip-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-F_leu_zip-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-F_leu_zip-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-F_leu_zip-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-F_leu_zip-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-F_leu_zip-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-F_leu_zip-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-F_leu_zip-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-F_leu_zip-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-F_leu_zip-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-F_leu_zip-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-F_leu_zip-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-F_leu_zip-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-F_leu_zip-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-F_leu_zip-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-F_leu_zip-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-F_leu_zip-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-F_leu_zip-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-F_leu_zip-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-F_leu_zip-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-F_leu_zip-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-F_leu_zip-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-F_leu_zip-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-F_leu_zip-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-F_leu_zip-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-F_leu_zip-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-F_leu_zip-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-F_leu_zip-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-F_leu_zip-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-F_leu_zip-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-F_leu_zip-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-F_leu_zip-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-F_leu_zip-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-F_leu_zip-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-F_leu_zip-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-F_leu_zip-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Undescribed-sp-D1.pep --tblout CENP-F_leu_zip-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-F_leu_zip-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-F_leu_zip-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-F_leu_zip-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-F_leu_zip-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-F_leu_zip-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-F_leu_zip-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-F_leu_zip-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_leu_zip-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-F_leu_zip-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-F_leu_zip.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-F_N-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-F_N-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-F_N-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-F_N-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-F_N-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-F_N-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-F_N-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-F_N-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Amphiprora-sp.pep --tblout CENP-F_N-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-F_N-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-F_N-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-F_N-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-F_N-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-F_N-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-F_N-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-F_N-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-F_N-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-F_N-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-F_N-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-F_N-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-F_N-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-F_N-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-F_N-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-F_N-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-F_N-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-F_N-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-F_N-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-F_N-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-F_N-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-F_N-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-F_N-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-F_N-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-F_N-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-F_N-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-F_N-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-F_N-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-F_N-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-F_N-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-F_N-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-F_N-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-F_N-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-F_N-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-F_N-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-F_N-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-F_N-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-F_N-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-F_N-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-F_N-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-F_N-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-F_N-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-F_N-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-F_N-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-F_N-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-F_N-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-F_N-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-F_N-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-F_N-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-F_N-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-F_N-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-F_N-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-F_N-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-F_N-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-F_N-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-F_N-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-F_N-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-F_N-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-F_N-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-F_N-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-F_N-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-F_N-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-F_N-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-F_N-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-F_N-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-F_N-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-F_N-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-F_N-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-F_N-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-F_N-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-F_N-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-F_N-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-F_N-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-F_N-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-F_N-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-F_N-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-F_N-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-F_N-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-F_N-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-F_N-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-F_N-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-F_N-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-F_N-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-F_N-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-F_N-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-F_N-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-F_N-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-F_N-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-F_N-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-F_N-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-F_N-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-F_N-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-F_N-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-F_N-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-F_N-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-F_N-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-F_N-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-F_N-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-F_N-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-F_N-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-F_N-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-F_N-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-F_N-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-F_N-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-F_N-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-F_N-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-F_N-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-F_N-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-F_N-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-F_N-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-F_N-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-F_N-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-F_N-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-F_N-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-F_N-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-F_N-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-F_N-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-F_N-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-F_N-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-F_N-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-F_N-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-F_N-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-F_N-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-F_N-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-F_N-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-F_N-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-F_N-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-F_N-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-F_N-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-F_N-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-F_N-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-F_N-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-F_N-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-F_N-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-F_N-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-F_N-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-F_N-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-F_N-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-F_N-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-F_N-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-F_N-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-F_N-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-F_N-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-F_N-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-F_N-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-F_N-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-F_N-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-F_N-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-F_N-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-F_N-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-F_N-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-F_N-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-F_N-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-F_N-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-F_N-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-F_N-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-F_N-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-F_N-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-F_N-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-F_N-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-F_N-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-F_N-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-F_N-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-F_N-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Oxyrrhis-marina.pep --tblout CENP-F_N-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-F_N-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-F_N-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-F_N-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-F_N-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-F_N-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-F_N-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-F_N-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-F_N-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-F_N-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-F_N-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-F_N-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-F_N-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-F_N-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-F_N-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-F_N-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-F_N-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-F_N-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-F_N-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-F_N-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-F_N-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-F_N-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-F_N-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-F_N-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-F_N-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-F_N-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-F_N-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-F_N-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-F_N-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-F_N-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-F_N-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-F_N-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-F_N-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-F_N-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-F_N-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-F_N-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-F_N-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-F_N-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-F_N-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-F_N-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-F_N-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-F_N-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-F_N-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-F_N-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-F_N-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-F_N-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-F_N-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-F_N-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-F_N-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-F_N-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-F_N-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-F_N-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-F_N-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-F_N-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-F_N-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-F_N-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-F_N-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-F_N-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-F_N-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-F_N-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-F_N-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-F_N-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-F_N-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-F_N-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-F_N-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-F_N-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-F_N-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-F_N-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-F_N-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-F_N-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-F_N-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-F_N-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-F_N-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-F_N-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-F_N-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-F_N-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-F_N-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-F_N-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-F_N-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-F_N-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-F_N-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-F_N-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-F_N-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-F_N-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-F_N-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-F_N-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-F_N-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-F_N-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-F_N-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-F_N-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-F_N-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-F_N-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-F_N-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-F_N-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-F_N-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-F_N-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-F_N-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-F_N-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-F_N-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-F_N-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-F_N-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-F_N-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-F_N-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-F_N-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-F_N-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-F_N-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-F_N-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-F_N-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-F_N-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Undescribed-sp-D1.pep --tblout CENP-F_N-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-F_N-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-F_N-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-F_N-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-F_N-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-F_N-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-F_N-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-F_N-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-F_N-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-F_N-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-F_N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-H-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-H-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-H-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-H-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-H-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-H-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-H-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-H-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Amphiprora-sp.pep --tblout CENP-H-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-H-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-H-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-H-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-H-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-H-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-H-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-H-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-H-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-H-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-H-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-H-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-H-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-H-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-H-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-H-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-H-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-H-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-H-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-H-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-H-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-H-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-H-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-H-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-H-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-H-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-H-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-H-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-H-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-H-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-H-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-H-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-H-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-H-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-H-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-H-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-H-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-H-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-H-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-H-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-H-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-H-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-H-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-H-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-H-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-H-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-H-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-H-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-H-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-H-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-H-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-H-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-H-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-H-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-H-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-H-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-H-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-H-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-H-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-H-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-H-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-H-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-H-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-H-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-H-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-H-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-H-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-H-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-H-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-H-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-H-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-H-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-H-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-H-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-H-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-H-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-H-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-H-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-H-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-H-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-H-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-H-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-H-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-H-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-H-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-H-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-H-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-H-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-H-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-H-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-H-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-H-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-H-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-H-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-H-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-H-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-H-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-H-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-H-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-H-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-H-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-H-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-H-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-H-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-H-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-H-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-H-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-H-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-H-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-H-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-H-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-H-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-H-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-H-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-H-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-H-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-H-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-H-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-H-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-H-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-H-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-H-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-H-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-H-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-H-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-H-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-H-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-H-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-H-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-H-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-H-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-H-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-H-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-H-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-H-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-H-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-H-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-H-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-H-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-H-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-H-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-H-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-H-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-H-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-H-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-H-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-H-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-H-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-H-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-H-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-H-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-H-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-H-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-H-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-H-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-H-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-H-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-H-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-H-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-H-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-H-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-H-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-H-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-H-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Oxyrrhis-marina.pep --tblout CENP-H-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-H-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-H-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-H-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-H-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-H-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-H-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-H-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-H-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-H-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-H-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-H-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-H-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-H-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-H-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-H-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-H-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-H-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-H-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-H-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-H-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-H-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-H-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-H-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-H-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-H-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-H-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-H-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-H-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-H-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-H-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-H-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-H-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-H-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-H-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-H-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-H-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-H-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-H-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-H-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-H-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-H-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-H-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-H-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-H-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-H-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-H-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-H-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-H-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-H-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-H-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-H-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-H-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-H-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-H-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-H-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-H-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-H-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-H-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-H-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-H-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-H-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-H-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-H-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-H-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-H-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-H-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-H-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-H-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-H-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-H-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-H-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-H-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-H-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-H-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-H-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-H-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-H-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-H-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-H-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-H-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-H-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-H-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-H-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-H-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-H-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-H-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-H-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-H-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-H-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-H-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-H-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-H-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-H-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-H-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-H-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-H-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-H-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-H-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-H-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-H-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-H-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-H-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-H-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-H-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-H-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-H-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-H-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-H-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Undescribed-sp-D1.pep --tblout CENP-H-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-H-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-H-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-H-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-H-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-H-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-H-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-H-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-H-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-H-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-H.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-I-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-I-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-I-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-I-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-I-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-I-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-I-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-I-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Amphiprora-sp.pep --tblout CENP-I-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-I-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-I-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-I-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-I-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-I-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-I-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-I-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-I-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-I-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-I-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-I-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-I-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-I-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-I-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-I-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-I-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-I-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-I-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-I-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-I-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-I-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-I-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-I-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-I-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-I-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-I-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-I-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-I-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-I-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-I-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-I-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-I-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-I-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-I-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-I-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-I-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-I-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-I-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-I-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-I-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-I-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-I-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-I-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-I-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-I-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-I-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-I-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-I-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-I-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-I-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-I-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-I-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-I-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-I-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-I-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-I-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-I-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-I-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-I-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-I-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-I-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-I-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-I-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-I-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-I-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-I-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-I-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-I-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-I-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-I-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-I-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-I-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-I-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-I-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-I-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-I-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-I-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-I-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-I-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-I-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-I-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-I-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-I-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-I-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-I-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-I-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-I-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-I-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-I-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-I-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-I-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-I-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-I-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-I-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-I-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-I-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-I-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-I-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-I-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-I-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-I-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-I-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-I-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-I-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-I-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-I-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-I-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-I-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-I-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-I-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-I-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-I-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-I-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-I-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-I-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-I-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-I-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-I-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-I-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-I-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-I-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-I-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-I-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-I-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-I-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-I-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-I-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-I-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-I-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-I-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-I-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-I-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-I-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-I-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-I-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-I-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-I-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-I-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-I-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-I-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-I-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-I-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-I-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-I-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-I-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-I-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-I-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-I-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-I-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-I-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-I-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-I-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-I-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-I-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-I-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-I-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-I-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-I-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-I-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-I-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-I-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-I-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-I-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Oxyrrhis-marina.pep --tblout CENP-I-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-I-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-I-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-I-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-I-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-I-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-I-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-I-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-I-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-I-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-I-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-I-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-I-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-I-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-I-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-I-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-I-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-I-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-I-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-I-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-I-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-I-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-I-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-I-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-I-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-I-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-I-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-I-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-I-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-I-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-I-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-I-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-I-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-I-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-I-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-I-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-I-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-I-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-I-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-I-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-I-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-I-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-I-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-I-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-I-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-I-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-I-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-I-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-I-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-I-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-I-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-I-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-I-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-I-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-I-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-I-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-I-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-I-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-I-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-I-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-I-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-I-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-I-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-I-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-I-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-I-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-I-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-I-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-I-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-I-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-I-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-I-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-I-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-I-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-I-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-I-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-I-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-I-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-I-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-I-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-I-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-I-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-I-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-I-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-I-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-I-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-I-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-I-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-I-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-I-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-I-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-I-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-I-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-I-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-I-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-I-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-I-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-I-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-I-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-I-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-I-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-I-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-I-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-I-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-I-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-I-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-I-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-I-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-I-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Undescribed-sp-D1.pep --tblout CENP-I-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-I-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-I-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-I-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-I-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-I-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-I-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-I-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-I-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-I-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-I.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-K-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-K-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-K-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-K-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-K-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-K-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-K-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-K-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Amphiprora-sp.pep --tblout CENP-K-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-K-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-K-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-K-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-K-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-K-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-K-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-K-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-K-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-K-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-K-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-K-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-K-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-K-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-K-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-K-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-K-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-K-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-K-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-K-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-K-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-K-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-K-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-K-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-K-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-K-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-K-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-K-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-K-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-K-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-K-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-K-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-K-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-K-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-K-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-K-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-K-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-K-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-K-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-K-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-K-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-K-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-K-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-K-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-K-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-K-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-K-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-K-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-K-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-K-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-K-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-K-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-K-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-K-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-K-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-K-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-K-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-K-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-K-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-K-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-K-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-K-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-K-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-K-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-K-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-K-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-K-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-K-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-K-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-K-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-K-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-K-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-K-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-K-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-K-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-K-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-K-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-K-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-K-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-K-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-K-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-K-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-K-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-K-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-K-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-K-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-K-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-K-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-K-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-K-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-K-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-K-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-K-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-K-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-K-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-K-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-K-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-K-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-K-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-K-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-K-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-K-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-K-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-K-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-K-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-K-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-K-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-K-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-K-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-K-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-K-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-K-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-K-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-K-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-K-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-K-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-K-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-K-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-K-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-K-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-K-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-K-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-K-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-K-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-K-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-K-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-K-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-K-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-K-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-K-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-K-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-K-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-K-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-K-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-K-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-K-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-K-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-K-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-K-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-K-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-K-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-K-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-K-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-K-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-K-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-K-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-K-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-K-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-K-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-K-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-K-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-K-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-K-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-K-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-K-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-K-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-K-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-K-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-K-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-K-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-K-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-K-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-K-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-K-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Oxyrrhis-marina.pep --tblout CENP-K-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-K-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-K-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-K-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-K-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-K-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-K-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-K-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-K-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-K-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-K-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-K-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-K-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-K-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-K-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-K-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-K-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-K-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-K-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-K-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-K-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-K-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-K-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-K-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-K-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-K-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-K-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-K-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-K-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-K-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-K-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-K-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-K-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-K-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-K-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-K-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-K-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-K-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-K-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-K-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-K-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-K-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-K-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-K-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-K-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-K-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-K-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-K-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-K-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-K-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-K-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-K-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-K-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-K-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-K-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-K-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-K-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-K-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-K-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-K-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-K-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-K-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-K-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-K-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-K-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-K-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-K-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-K-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-K-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-K-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-K-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-K-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-K-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-K-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-K-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-K-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-K-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-K-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-K-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-K-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-K-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-K-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-K-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-K-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-K-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-K-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-K-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-K-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-K-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-K-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-K-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-K-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-K-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-K-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-K-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-K-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-K-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-K-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-K-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-K-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-K-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-K-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-K-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-K-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-K-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-K-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-K-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-K-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-K-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Undescribed-sp-D1.pep --tblout CENP-K-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-K-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-K-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-K-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-K-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-K-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-K-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-K-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-K-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-K-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-K.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-L-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-L-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-L-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-L-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-L-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-L-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-L-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-L-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Amphiprora-sp.pep --tblout CENP-L-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-L-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-L-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-L-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-L-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-L-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-L-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-L-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-L-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-L-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-L-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-L-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-L-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-L-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-L-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-L-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-L-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-L-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-L-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-L-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-L-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-L-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-L-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-L-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-L-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-L-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-L-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-L-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-L-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-L-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-L-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-L-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-L-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-L-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-L-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-L-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-L-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-L-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-L-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-L-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-L-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-L-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-L-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-L-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-L-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-L-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-L-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-L-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-L-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-L-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-L-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-L-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-L-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-L-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-L-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-L-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-L-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-L-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-L-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-L-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-L-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-L-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-L-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-L-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-L-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-L-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-L-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-L-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-L-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-L-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-L-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-L-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-L-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-L-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-L-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-L-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-L-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-L-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-L-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-L-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-L-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-L-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-L-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-L-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-L-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-L-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-L-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-L-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-L-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-L-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-L-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-L-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-L-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-L-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-L-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-L-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-L-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-L-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-L-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-L-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-L-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-L-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-L-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-L-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-L-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-L-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-L-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-L-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-L-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-L-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-L-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-L-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-L-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-L-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-L-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-L-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-L-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-L-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-L-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-L-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-L-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-L-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-L-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-L-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-L-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-L-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-L-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-L-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-L-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-L-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-L-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-L-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-L-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-L-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-L-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-L-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-L-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-L-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-L-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-L-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-L-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-L-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-L-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-L-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-L-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-L-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-L-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-L-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-L-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-L-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-L-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-L-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-L-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-L-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-L-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-L-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-L-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-L-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-L-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-L-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-L-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-L-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-L-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-L-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Oxyrrhis-marina.pep --tblout CENP-L-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-L-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-L-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-L-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-L-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-L-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-L-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-L-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-L-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-L-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-L-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-L-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-L-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-L-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-L-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-L-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-L-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-L-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-L-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-L-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-L-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-L-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-L-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-L-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-L-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-L-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-L-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-L-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-L-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-L-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-L-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-L-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-L-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-L-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-L-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-L-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-L-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-L-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-L-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-L-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-L-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-L-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-L-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-L-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-L-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-L-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-L-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-L-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-L-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-L-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-L-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-L-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-L-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-L-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-L-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-L-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-L-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-L-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-L-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-L-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-L-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-L-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-L-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-L-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-L-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-L-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-L-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-L-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-L-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-L-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-L-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-L-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-L-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-L-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-L-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-L-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-L-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-L-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-L-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-L-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-L-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-L-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-L-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-L-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-L-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-L-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-L-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-L-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-L-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-L-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-L-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-L-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-L-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-L-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-L-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-L-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-L-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-L-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-L-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-L-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-L-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-L-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-L-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-L-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-L-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-L-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-L-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-L-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-L-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Undescribed-sp-D1.pep --tblout CENP-L-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-L-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-L-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-L-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-L-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-L-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-L-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-L-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-L-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-L-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-L.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-M-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-M-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-M-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-M-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-M-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-M-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-M-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-M-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Amphiprora-sp.pep --tblout CENP-M-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-M-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-M-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-M-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-M-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-M-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-M-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-M-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-M-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-M-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-M-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-M-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-M-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-M-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-M-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-M-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-M-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-M-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-M-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-M-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-M-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-M-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-M-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-M-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-M-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-M-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-M-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-M-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-M-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-M-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-M-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-M-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-M-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-M-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-M-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-M-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-M-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-M-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-M-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-M-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-M-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-M-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-M-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-M-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-M-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-M-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-M-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-M-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-M-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-M-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-M-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-M-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-M-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-M-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-M-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-M-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-M-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-M-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-M-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-M-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-M-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-M-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-M-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-M-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-M-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-M-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-M-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-M-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-M-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-M-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-M-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-M-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-M-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-M-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-M-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-M-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-M-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-M-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-M-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-M-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-M-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-M-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-M-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-M-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-M-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-M-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-M-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-M-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-M-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-M-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-M-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-M-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-M-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-M-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-M-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-M-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-M-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-M-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-M-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-M-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-M-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-M-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-M-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-M-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-M-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-M-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-M-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-M-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-M-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-M-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-M-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-M-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-M-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-M-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-M-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-M-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-M-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-M-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-M-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-M-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-M-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-M-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-M-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-M-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-M-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-M-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-M-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-M-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-M-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-M-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-M-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-M-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-M-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-M-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-M-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-M-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-M-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-M-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-M-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-M-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-M-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-M-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-M-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-M-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-M-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-M-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-M-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-M-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-M-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-M-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-M-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-M-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-M-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-M-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-M-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-M-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-M-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-M-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-M-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-M-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-M-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-M-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-M-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-M-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Oxyrrhis-marina.pep --tblout CENP-M-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-M-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-M-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-M-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-M-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-M-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-M-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-M-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-M-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-M-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-M-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-M-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-M-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-M-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-M-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-M-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-M-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-M-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-M-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-M-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-M-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-M-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-M-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-M-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-M-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-M-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-M-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-M-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-M-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-M-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-M-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-M-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-M-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-M-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-M-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-M-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-M-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-M-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-M-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-M-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-M-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-M-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-M-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-M-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-M-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-M-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-M-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-M-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-M-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-M-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-M-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-M-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-M-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-M-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-M-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-M-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-M-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-M-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-M-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-M-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-M-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-M-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-M-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-M-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-M-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-M-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-M-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-M-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-M-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-M-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-M-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-M-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-M-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-M-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-M-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-M-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-M-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-M-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-M-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-M-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-M-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-M-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-M-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-M-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-M-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-M-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-M-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-M-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-M-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-M-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-M-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-M-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-M-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-M-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-M-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-M-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-M-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-M-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-M-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-M-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-M-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-M-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-M-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-M-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-M-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-M-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-M-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-M-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-M-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Undescribed-sp-D1.pep --tblout CENP-M-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-M-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-M-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-M-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-M-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-M-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-M-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-M-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-M-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-M-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-M.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-N-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-N-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-N-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-N-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-N-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-N-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-N-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-N-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Amphiprora-sp.pep --tblout CENP-N-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-N-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-N-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-N-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-N-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-N-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-N-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-N-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-N-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-N-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-N-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-N-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-N-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-N-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-N-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-N-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-N-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-N-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-N-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-N-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-N-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-N-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-N-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-N-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-N-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-N-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-N-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-N-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-N-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-N-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-N-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-N-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-N-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-N-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-N-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-N-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-N-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-N-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-N-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-N-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-N-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-N-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-N-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-N-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-N-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-N-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-N-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-N-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-N-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-N-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-N-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-N-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-N-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-N-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-N-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-N-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-N-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-N-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-N-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-N-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-N-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-N-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-N-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-N-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-N-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-N-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-N-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-N-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-N-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-N-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-N-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-N-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-N-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-N-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-N-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-N-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-N-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-N-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-N-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-N-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-N-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-N-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-N-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-N-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-N-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-N-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-N-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-N-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-N-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-N-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-N-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-N-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-N-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-N-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-N-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-N-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-N-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-N-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-N-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-N-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-N-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-N-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-N-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-N-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-N-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-N-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-N-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-N-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-N-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-N-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-N-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-N-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-N-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-N-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-N-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-N-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-N-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-N-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-N-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-N-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-N-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-N-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-N-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-N-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-N-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-N-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-N-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-N-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-N-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-N-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-N-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-N-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-N-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-N-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-N-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-N-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-N-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-N-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-N-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-N-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-N-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-N-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-N-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-N-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-N-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-N-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-N-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-N-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-N-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-N-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-N-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-N-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-N-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-N-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-N-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-N-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-N-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-N-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-N-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-N-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-N-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-N-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-N-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-N-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Oxyrrhis-marina.pep --tblout CENP-N-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-N-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-N-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-N-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-N-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-N-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-N-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-N-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-N-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-N-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-N-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-N-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-N-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-N-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-N-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-N-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-N-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-N-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-N-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-N-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-N-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-N-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-N-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-N-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-N-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-N-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-N-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-N-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-N-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-N-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-N-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-N-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-N-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-N-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-N-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-N-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-N-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-N-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-N-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-N-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-N-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-N-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-N-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-N-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-N-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-N-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-N-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-N-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-N-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-N-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-N-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-N-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-N-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-N-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-N-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-N-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-N-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-N-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-N-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-N-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-N-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-N-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-N-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-N-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-N-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-N-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-N-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-N-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-N-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-N-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-N-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-N-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-N-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-N-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-N-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-N-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-N-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-N-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-N-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-N-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-N-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-N-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-N-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-N-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-N-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-N-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-N-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-N-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-N-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-N-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-N-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-N-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-N-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-N-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-N-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-N-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-N-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-N-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-N-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-N-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-N-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-N-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-N-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-N-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-N-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-N-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-N-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-N-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-N-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Undescribed-sp-D1.pep --tblout CENP-N-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-N-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-N-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-N-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-N-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-N-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-N-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-N-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-N-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-N-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-N.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-O-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-O-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-O-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-O-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-O-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-O-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-O-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-O-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Amphiprora-sp.pep --tblout CENP-O-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-O-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-O-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-O-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-O-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-O-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-O-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-O-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-O-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-O-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-O-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-O-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-O-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-O-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-O-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-O-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-O-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-O-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-O-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-O-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-O-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-O-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-O-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-O-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-O-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-O-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-O-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-O-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-O-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-O-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-O-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-O-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-O-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-O-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-O-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-O-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-O-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-O-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-O-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-O-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-O-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-O-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-O-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-O-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-O-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-O-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-O-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-O-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-O-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-O-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-O-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-O-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-O-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-O-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-O-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-O-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-O-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-O-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-O-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-O-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-O-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-O-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-O-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-O-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-O-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-O-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-O-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-O-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-O-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-O-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-O-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-O-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-O-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-O-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-O-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-O-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-O-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-O-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-O-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-O-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-O-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-O-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-O-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-O-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-O-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-O-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-O-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-O-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-O-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-O-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-O-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-O-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-O-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-O-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-O-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-O-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-O-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-O-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-O-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-O-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-O-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-O-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-O-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-O-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-O-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-O-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-O-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-O-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-O-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-O-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-O-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-O-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-O-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-O-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-O-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-O-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-O-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-O-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-O-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-O-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-O-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-O-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-O-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-O-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-O-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-O-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-O-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-O-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-O-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-O-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-O-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-O-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-O-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-O-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-O-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-O-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-O-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-O-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-O-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-O-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-O-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-O-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-O-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-O-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-O-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-O-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-O-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-O-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-O-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-O-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-O-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-O-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-O-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-O-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-O-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-O-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-O-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-O-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-O-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-O-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-O-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-O-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-O-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-O-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Oxyrrhis-marina.pep --tblout CENP-O-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-O-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-O-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-O-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-O-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-O-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-O-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-O-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-O-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-O-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-O-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-O-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-O-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-O-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-O-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-O-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-O-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-O-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-O-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-O-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-O-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-O-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-O-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-O-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-O-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-O-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-O-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-O-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-O-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-O-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-O-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-O-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-O-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-O-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-O-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-O-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-O-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-O-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-O-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-O-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-O-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-O-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-O-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-O-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-O-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-O-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-O-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-O-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-O-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-O-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-O-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-O-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-O-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-O-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-O-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-O-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-O-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-O-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-O-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-O-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-O-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-O-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-O-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-O-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-O-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-O-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-O-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-O-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-O-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-O-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-O-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-O-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-O-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-O-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-O-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-O-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-O-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-O-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-O-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-O-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-O-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-O-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-O-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-O-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-O-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-O-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-O-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-O-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-O-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-O-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-O-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-O-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-O-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-O-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-O-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-O-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-O-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-O-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-O-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-O-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-O-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-O-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-O-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-O-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-O-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-O-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-O-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-O-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-O-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Undescribed-sp-D1.pep --tblout CENP-O-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-O-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-O-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-O-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-O-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-O-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-O-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-O-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-O-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-O-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-O.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-P-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-P-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-P-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-P-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-P-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-P-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-P-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-P-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Amphiprora-sp.pep --tblout CENP-P-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-P-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-P-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-P-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-P-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-P-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-P-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-P-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-P-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-P-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-P-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-P-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-P-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-P-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-P-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-P-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-P-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-P-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-P-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-P-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-P-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-P-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-P-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-P-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-P-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-P-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-P-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-P-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-P-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-P-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-P-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-P-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-P-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-P-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-P-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-P-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-P-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-P-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-P-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-P-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-P-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-P-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-P-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-P-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-P-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-P-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-P-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-P-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-P-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-P-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-P-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-P-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-P-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-P-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-P-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-P-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-P-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-P-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-P-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-P-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-P-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-P-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-P-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-P-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-P-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-P-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-P-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-P-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-P-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-P-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-P-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-P-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-P-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-P-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-P-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-P-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-P-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-P-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-P-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-P-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-P-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-P-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-P-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-P-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-P-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-P-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-P-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-P-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-P-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-P-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-P-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-P-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-P-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-P-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-P-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-P-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-P-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-P-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-P-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-P-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-P-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-P-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-P-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-P-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-P-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-P-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-P-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-P-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-P-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-P-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-P-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-P-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-P-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-P-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-P-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-P-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-P-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-P-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-P-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-P-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-P-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-P-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-P-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-P-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-P-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-P-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-P-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-P-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-P-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-P-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-P-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-P-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-P-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-P-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-P-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-P-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-P-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-P-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-P-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-P-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-P-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-P-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-P-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-P-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-P-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-P-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-P-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-P-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-P-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-P-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-P-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-P-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-P-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-P-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-P-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-P-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-P-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-P-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-P-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-P-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-P-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-P-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-P-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-P-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Oxyrrhis-marina.pep --tblout CENP-P-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-P-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-P-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-P-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-P-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-P-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-P-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-P-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-P-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-P-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-P-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-P-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-P-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-P-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-P-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-P-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-P-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-P-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-P-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-P-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-P-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-P-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-P-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-P-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-P-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-P-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-P-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-P-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-P-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-P-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-P-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-P-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-P-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-P-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-P-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-P-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-P-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-P-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-P-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-P-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-P-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-P-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-P-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-P-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-P-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-P-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-P-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-P-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-P-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-P-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-P-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-P-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-P-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-P-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-P-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-P-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-P-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-P-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-P-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-P-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-P-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-P-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-P-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-P-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-P-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-P-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-P-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-P-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-P-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-P-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-P-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-P-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-P-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-P-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-P-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-P-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-P-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-P-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-P-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-P-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-P-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-P-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-P-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-P-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-P-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-P-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-P-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-P-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-P-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-P-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-P-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-P-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-P-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-P-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-P-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-P-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-P-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-P-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-P-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-P-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-P-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-P-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-P-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-P-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-P-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-P-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-P-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-P-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-P-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Undescribed-sp-D1.pep --tblout CENP-P-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-P-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-P-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-P-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-P-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-P-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-P-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-P-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-P-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-P-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-P.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-Q-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-Q-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-Q-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-Q-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-Q-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-Q-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-Q-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-Q-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Amphiprora-sp.pep --tblout CENP-Q-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-Q-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-Q-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-Q-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-Q-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-Q-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-Q-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-Q-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-Q-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-Q-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-Q-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-Q-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-Q-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-Q-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-Q-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-Q-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-Q-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-Q-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-Q-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-Q-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-Q-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-Q-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-Q-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-Q-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-Q-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-Q-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-Q-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-Q-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-Q-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-Q-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-Q-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-Q-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-Q-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-Q-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-Q-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-Q-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-Q-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-Q-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-Q-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-Q-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-Q-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-Q-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-Q-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-Q-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-Q-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-Q-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-Q-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-Q-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-Q-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-Q-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-Q-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-Q-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-Q-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-Q-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-Q-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-Q-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-Q-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-Q-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-Q-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-Q-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-Q-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-Q-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-Q-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-Q-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-Q-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-Q-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-Q-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-Q-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-Q-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-Q-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-Q-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-Q-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-Q-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-Q-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-Q-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-Q-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-Q-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-Q-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-Q-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-Q-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-Q-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-Q-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-Q-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-Q-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-Q-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-Q-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-Q-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-Q-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-Q-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-Q-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-Q-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-Q-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-Q-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-Q-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-Q-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-Q-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-Q-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-Q-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-Q-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-Q-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-Q-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-Q-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-Q-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-Q-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-Q-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-Q-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-Q-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-Q-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-Q-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-Q-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-Q-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-Q-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-Q-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-Q-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-Q-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-Q-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-Q-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-Q-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-Q-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-Q-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-Q-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-Q-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-Q-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-Q-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-Q-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-Q-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-Q-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-Q-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-Q-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-Q-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-Q-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-Q-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-Q-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-Q-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-Q-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-Q-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-Q-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-Q-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-Q-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-Q-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-Q-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-Q-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-Q-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-Q-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-Q-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-Q-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-Q-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-Q-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-Q-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-Q-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-Q-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-Q-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-Q-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-Q-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-Q-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-Q-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-Q-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-Q-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-Q-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-Q-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-Q-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-Q-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-Q-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-Q-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Oxyrrhis-marina.pep --tblout CENP-Q-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-Q-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-Q-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-Q-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-Q-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-Q-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-Q-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-Q-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-Q-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-Q-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-Q-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-Q-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-Q-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-Q-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-Q-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-Q-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-Q-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-Q-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-Q-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-Q-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-Q-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-Q-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-Q-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-Q-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-Q-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-Q-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-Q-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-Q-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-Q-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-Q-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-Q-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-Q-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-Q-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-Q-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-Q-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-Q-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-Q-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-Q-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-Q-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-Q-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-Q-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-Q-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-Q-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-Q-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-Q-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-Q-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-Q-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-Q-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-Q-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-Q-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-Q-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-Q-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-Q-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-Q-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-Q-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-Q-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-Q-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-Q-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-Q-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-Q-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-Q-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-Q-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-Q-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-Q-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-Q-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-Q-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-Q-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-Q-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-Q-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-Q-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-Q-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-Q-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-Q-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-Q-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-Q-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-Q-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-Q-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-Q-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-Q-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-Q-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-Q-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-Q-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-Q-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-Q-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-Q-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-Q-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-Q-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-Q-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-Q-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-Q-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-Q-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-Q-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-Q-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-Q-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-Q-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-Q-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-Q-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-Q-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-Q-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-Q-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-Q-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-Q-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-Q-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-Q-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-Q-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-Q-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-Q-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-Q-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-Q-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Undescribed-sp-D1.pep --tblout CENP-Q-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-Q-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-Q-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-Q-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-Q-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-Q-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-Q-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-Q-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-Q-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-Q-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-Q.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-R-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-R-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-R-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-R-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-R-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-R-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-R-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-R-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Amphiprora-sp.pep --tblout CENP-R-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-R-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-R-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-R-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-R-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-R-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-R-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-R-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-R-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-R-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-R-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-R-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-R-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-R-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-R-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-R-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-R-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-R-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-R-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-R-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-R-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-R-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-R-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-R-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-R-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-R-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-R-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-R-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-R-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-R-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-R-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-R-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-R-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-R-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-R-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-R-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-R-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-R-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-R-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-R-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-R-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-R-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-R-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-R-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-R-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-R-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-R-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-R-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-R-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-R-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-R-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-R-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-R-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-R-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-R-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-R-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-R-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-R-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-R-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-R-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-R-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-R-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-R-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-R-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-R-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-R-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-R-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-R-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-R-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-R-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-R-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-R-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-R-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-R-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-R-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-R-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-R-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-R-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-R-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-R-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-R-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-R-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-R-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-R-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-R-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-R-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-R-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-R-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-R-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-R-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-R-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-R-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-R-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-R-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-R-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-R-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-R-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-R-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-R-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-R-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-R-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-R-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-R-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-R-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-R-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-R-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-R-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-R-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-R-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-R-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-R-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-R-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-R-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-R-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-R-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-R-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-R-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-R-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-R-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-R-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-R-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-R-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-R-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-R-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-R-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-R-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-R-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-R-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-R-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-R-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-R-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-R-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-R-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-R-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-R-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-R-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-R-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-R-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-R-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-R-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-R-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-R-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-R-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-R-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-R-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-R-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-R-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-R-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-R-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-R-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-R-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-R-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-R-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-R-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-R-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-R-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-R-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-R-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-R-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-R-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-R-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-R-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-R-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-R-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Oxyrrhis-marina.pep --tblout CENP-R-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-R-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-R-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-R-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-R-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-R-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-R-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-R-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-R-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-R-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-R-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-R-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-R-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-R-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-R-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-R-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-R-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-R-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-R-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-R-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-R-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-R-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-R-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-R-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-R-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-R-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-R-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-R-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-R-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-R-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-R-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-R-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-R-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-R-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-R-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-R-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-R-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-R-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-R-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-R-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-R-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-R-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-R-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-R-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-R-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-R-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-R-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-R-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-R-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-R-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-R-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-R-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-R-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-R-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-R-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-R-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-R-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-R-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-R-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-R-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-R-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-R-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-R-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-R-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-R-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-R-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-R-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-R-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-R-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-R-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-R-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-R-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-R-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-R-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-R-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-R-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-R-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-R-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-R-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-R-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-R-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-R-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-R-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-R-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-R-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-R-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-R-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-R-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-R-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-R-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-R-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-R-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-R-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-R-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-R-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-R-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-R-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-R-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-R-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-R-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-R-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-R-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-R-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-R-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-R-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-R-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-R-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-R-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-R-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Undescribed-sp-D1.pep --tblout CENP-R-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-R-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-R-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-R-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-R-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-R-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-R-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-R-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-R-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-R-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-R.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-S-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-S-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-S-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-S-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-S-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-S-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-S-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-S-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Amphiprora-sp.pep --tblout CENP-S-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-S-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-S-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-S-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-S-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-S-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-S-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-S-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-S-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-S-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-S-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-S-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-S-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-S-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-S-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-S-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-S-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-S-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-S-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-S-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-S-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-S-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-S-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-S-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-S-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-S-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-S-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-S-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-S-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-S-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-S-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-S-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-S-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-S-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-S-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-S-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-S-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-S-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-S-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-S-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-S-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-S-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-S-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-S-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-S-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-S-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-S-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-S-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-S-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-S-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-S-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-S-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-S-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-S-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-S-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-S-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-S-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-S-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-S-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-S-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-S-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-S-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-S-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-S-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-S-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-S-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-S-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-S-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-S-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-S-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-S-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-S-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-S-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-S-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-S-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-S-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-S-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-S-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-S-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-S-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-S-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-S-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-S-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-S-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-S-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-S-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-S-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-S-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-S-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-S-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-S-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-S-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-S-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-S-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-S-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-S-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-S-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-S-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-S-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-S-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-S-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-S-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-S-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-S-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-S-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-S-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-S-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-S-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-S-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-S-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-S-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-S-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-S-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-S-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-S-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-S-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-S-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-S-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-S-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-S-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-S-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-S-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-S-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-S-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-S-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-S-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-S-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-S-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-S-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-S-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-S-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-S-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-S-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-S-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-S-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-S-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-S-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-S-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-S-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-S-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-S-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-S-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-S-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-S-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-S-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-S-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-S-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-S-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-S-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-S-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-S-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-S-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-S-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-S-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-S-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-S-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-S-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-S-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-S-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-S-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-S-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-S-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-S-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-S-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Oxyrrhis-marina.pep --tblout CENP-S-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-S-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-S-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-S-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-S-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-S-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-S-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-S-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-S-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-S-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-S-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-S-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-S-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-S-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-S-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-S-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-S-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-S-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-S-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-S-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-S-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-S-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-S-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-S-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-S-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-S-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-S-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-S-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-S-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-S-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-S-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-S-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-S-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-S-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-S-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-S-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-S-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-S-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-S-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-S-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-S-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-S-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-S-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-S-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-S-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-S-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-S-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-S-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-S-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-S-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-S-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-S-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-S-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-S-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-S-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-S-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-S-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-S-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-S-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-S-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-S-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-S-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-S-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-S-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-S-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-S-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-S-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-S-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-S-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-S-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-S-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-S-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-S-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-S-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-S-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-S-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-S-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-S-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-S-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-S-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-S-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-S-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-S-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-S-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-S-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-S-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-S-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-S-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-S-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-S-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-S-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-S-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-S-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-S-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-S-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-S-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-S-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-S-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-S-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-S-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-S-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-S-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-S-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-S-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-S-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-S-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-S-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-S-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-S-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Undescribed-sp-D1.pep --tblout CENP-S-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-S-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-S-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-S-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-S-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-S-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-S-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-S-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-S-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-S-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-S.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-T-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-T-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-T-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-T-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-T-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-T-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-T-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-T-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Amphiprora-sp.pep --tblout CENP-T-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-T-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-T-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-T-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-T-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-T-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-T-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-T-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-T-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-T-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-T-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-T-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-T-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-T-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-T-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-T-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-T-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-T-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-T-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-T-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-T-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-T-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-T-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-T-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-T-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-T-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-T-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-T-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-T-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-T-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-T-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-T-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-T-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-T-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-T-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-T-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-T-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-T-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-T-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-T-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-T-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-T-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-T-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-T-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-T-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-T-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-T-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-T-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-T-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-T-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-T-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-T-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-T-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-T-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-T-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-T-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-T-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-T-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-T-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-T-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-T-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-T-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-T-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-T-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-T-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-T-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-T-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-T-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-T-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-T-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-T-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-T-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-T-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-T-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-T-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-T-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-T-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-T-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-T-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-T-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-T-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-T-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-T-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-T-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-T-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-T-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-T-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-T-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-T-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-T-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-T-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-T-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-T-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-T-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-T-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-T-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-T-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-T-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-T-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-T-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-T-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-T-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-T-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-T-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-T-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-T-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-T-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-T-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-T-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-T-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-T-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-T-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-T-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-T-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-T-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-T-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-T-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-T-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-T-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-T-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-T-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-T-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-T-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-T-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-T-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-T-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-T-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-T-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-T-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-T-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-T-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-T-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-T-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-T-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-T-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-T-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-T-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-T-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-T-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-T-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-T-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-T-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-T-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-T-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-T-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-T-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-T-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-T-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-T-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-T-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-T-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-T-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-T-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-T-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-T-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-T-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-T-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-T-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-T-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-T-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-T-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-T-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-T-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-T-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Oxyrrhis-marina.pep --tblout CENP-T-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-T-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-T-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-T-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-T-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-T-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-T-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-T-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-T-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-T-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-T-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-T-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-T-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-T-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-T-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-T-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-T-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-T-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-T-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-T-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-T-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-T-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-T-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-T-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-T-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-T-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-T-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-T-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-T-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-T-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-T-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-T-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-T-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-T-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-T-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-T-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-T-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-T-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-T-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-T-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-T-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-T-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-T-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-T-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-T-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-T-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-T-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-T-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-T-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-T-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-T-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-T-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-T-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-T-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-T-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-T-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-T-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-T-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-T-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-T-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-T-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-T-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-T-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-T-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-T-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-T-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-T-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-T-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-T-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-T-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-T-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-T-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-T-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-T-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-T-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-T-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-T-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-T-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-T-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-T-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-T-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-T-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-T-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-T-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-T-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-T-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-T-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-T-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-T-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-T-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-T-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-T-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-T-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-T-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-T-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-T-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-T-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-T-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-T-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-T-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-T-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-T-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-T-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-T-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-T-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-T-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-T-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-T-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-T-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Undescribed-sp-D1.pep --tblout CENP-T-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-T-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-T-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-T-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-T-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-T-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-T-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-T-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-T-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-T-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-T.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-U-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-U-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-U-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-U-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-U-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-U-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-U-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-U-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Amphiprora-sp.pep --tblout CENP-U-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-U-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-U-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-U-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-U-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-U-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-U-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-U-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-U-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-U-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-U-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-U-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-U-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-U-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-U-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-U-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-U-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-U-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-U-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-U-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-U-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-U-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-U-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-U-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-U-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-U-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-U-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-U-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-U-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-U-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-U-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-U-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-U-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-U-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-U-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-U-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-U-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-U-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-U-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-U-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-U-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-U-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-U-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-U-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-U-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-U-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-U-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-U-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-U-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-U-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-U-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-U-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-U-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-U-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-U-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-U-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-U-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-U-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-U-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-U-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-U-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-U-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-U-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-U-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-U-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-U-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-U-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-U-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-U-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-U-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-U-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-U-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-U-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-U-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-U-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-U-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-U-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-U-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-U-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-U-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-U-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-U-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-U-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-U-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-U-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-U-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-U-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-U-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-U-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-U-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-U-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-U-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-U-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-U-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-U-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-U-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-U-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-U-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-U-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-U-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-U-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-U-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-U-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-U-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-U-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-U-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-U-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-U-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-U-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-U-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-U-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-U-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-U-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-U-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-U-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-U-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-U-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-U-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-U-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-U-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-U-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-U-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-U-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-U-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-U-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-U-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-U-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-U-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-U-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-U-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-U-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-U-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-U-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-U-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-U-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-U-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-U-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-U-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-U-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-U-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-U-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-U-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-U-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-U-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-U-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-U-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-U-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-U-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-U-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-U-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-U-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-U-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-U-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-U-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-U-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-U-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-U-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-U-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-U-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-U-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-U-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-U-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-U-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-U-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Oxyrrhis-marina.pep --tblout CENP-U-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-U-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-U-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-U-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-U-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-U-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-U-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-U-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-U-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-U-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-U-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-U-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-U-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-U-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-U-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-U-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-U-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-U-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-U-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-U-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-U-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-U-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-U-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-U-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-U-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-U-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-U-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-U-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-U-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-U-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-U-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-U-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-U-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-U-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-U-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-U-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-U-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-U-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-U-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-U-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-U-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-U-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-U-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-U-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-U-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-U-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-U-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-U-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-U-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-U-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-U-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-U-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-U-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-U-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-U-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-U-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-U-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-U-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-U-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-U-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-U-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-U-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-U-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-U-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-U-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-U-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-U-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-U-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-U-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-U-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-U-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-U-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-U-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-U-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-U-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-U-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-U-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-U-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-U-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-U-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-U-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-U-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-U-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-U-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-U-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-U-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-U-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-U-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-U-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-U-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-U-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-U-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-U-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-U-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-U-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-U-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-U-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-U-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-U-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-U-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-U-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-U-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-U-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-U-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-U-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-U-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-U-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-U-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-U-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Undescribed-sp-D1.pep --tblout CENP-U-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-U-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-U-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-U-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-U-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-U-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-U-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-U-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-U-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-U-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-U.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-W-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-W-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-W-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-W-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-W-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-W-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-W-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-W-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Amphiprora-sp.pep --tblout CENP-W-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-W-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-W-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-W-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-W-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-W-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-W-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-W-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-W-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-W-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-W-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-W-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-W-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-W-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-W-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-W-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-W-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-W-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-W-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-W-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-W-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-W-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-W-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-W-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-W-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-W-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-W-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-W-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-W-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-W-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-W-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-W-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-W-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-W-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-W-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-W-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-W-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-W-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-W-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-W-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-W-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-W-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-W-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-W-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-W-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-W-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-W-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-W-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-W-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-W-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-W-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-W-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-W-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-W-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-W-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-W-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-W-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-W-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-W-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-W-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-W-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-W-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-W-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-W-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-W-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-W-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-W-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-W-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-W-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-W-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-W-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-W-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-W-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-W-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-W-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-W-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-W-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-W-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-W-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-W-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-W-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-W-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-W-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-W-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-W-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-W-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-W-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-W-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-W-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-W-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-W-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-W-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-W-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-W-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-W-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-W-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-W-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-W-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-W-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-W-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-W-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-W-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-W-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-W-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-W-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-W-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-W-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-W-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-W-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-W-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-W-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-W-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-W-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-W-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-W-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-W-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-W-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-W-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-W-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-W-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-W-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-W-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-W-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-W-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-W-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-W-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-W-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-W-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-W-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-W-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-W-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-W-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-W-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-W-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-W-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-W-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-W-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-W-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-W-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-W-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-W-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-W-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-W-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-W-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-W-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-W-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-W-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-W-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-W-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-W-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-W-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-W-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-W-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-W-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-W-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-W-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-W-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-W-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-W-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-W-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-W-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-W-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-W-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-W-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Oxyrrhis-marina.pep --tblout CENP-W-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-W-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-W-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-W-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-W-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-W-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-W-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-W-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-W-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-W-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-W-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-W-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-W-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-W-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-W-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-W-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-W-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-W-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-W-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-W-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-W-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-W-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-W-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-W-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-W-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-W-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-W-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-W-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-W-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-W-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-W-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-W-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-W-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-W-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-W-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-W-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-W-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-W-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-W-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-W-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-W-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-W-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-W-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-W-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-W-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-W-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-W-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-W-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-W-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-W-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-W-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-W-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-W-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-W-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-W-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-W-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-W-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-W-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-W-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-W-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-W-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-W-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-W-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-W-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-W-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-W-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-W-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-W-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-W-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-W-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-W-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-W-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-W-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-W-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-W-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-W-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-W-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-W-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-W-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-W-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-W-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-W-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-W-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-W-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-W-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-W-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-W-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-W-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-W-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-W-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-W-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-W-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-W-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-W-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-W-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-W-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-W-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-W-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-W-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-W-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-W-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-W-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-W-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-W-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-W-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-W-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-W-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-W-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-W-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Undescribed-sp-D1.pep --tblout CENP-W-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-W-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-W-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-W-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-W-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-W-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-W-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-W-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-W-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-W-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-W.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Acanthoeca_like-sp-10tr.pep --tblout CENP-X-hmmscan-Acanthoeca_like-sp-10tr.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Acanthoeca_like-sp-10tr.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Akashiwo-sanguinea-CCCM-885.pep --tblout CENP-X-hmmscan-Akashiwo-sanguinea-CCCM-885.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Akashiwo-sanguinea-CCCM-885.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Alexandrium-fundyense-CCMP1719.pep --tblout CENP-X-hmmscan-Alexandrium-fundyense-CCMP1719.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-fundyense-CCMP1719.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Alexandrium-monilatum-CCMP3105.pep --tblout CENP-X-hmmscan-Alexandrium-monilatum-CCMP3105.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-monilatum-CCMP3105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Alexandrium-temarense-CCMP1771.pep --tblout CENP-X-hmmscan-Alexandrium-temarense-CCMP1771.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Alexandrium-temarense-CCMP1771.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Ammonia-sp.-Unknown.pep --tblout CENP-X-hmmscan-Ammonia-sp.-Unknown.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ammonia-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Amoebophrya-sp.-Ameob2.pep --tblout CENP-X-hmmscan-Amoebophrya-sp.-Ameob2.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amoebophrya-sp.-Ameob2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Amphidinium-carterae-CCMP1314.pep --tblout CENP-X-hmmscan-Amphidinium-carterae-CCMP1314.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphidinium-carterae-CCMP1314.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Amphiprora-sp.pep --tblout CENP-X-hmmscan-Amphiprora-sp.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphiprora-sp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Amphora-coffeaeformis-CCMP127.pep --tblout CENP-X-hmmscan-Amphora-coffeaeformis-CCMP127.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Amphora-coffeaeformis-CCMP127.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Aplanochytrium-sp-PBS07.pep --tblout CENP-X-hmmscan-Aplanochytrium-sp-PBS07.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-sp-PBS07.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep --tblout CENP-X-hmmscan-Aplanochytrium-stocchinoi-GSBS06.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aplanochytrium-stocchinoi-GSBS06.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Aristerostoma-sp.-ATCC-50986.pep --tblout CENP-X-hmmscan-Aristerostoma-sp.-ATCC-50986.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aristerostoma-sp.-ATCC-50986.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Asterionellopsis-glacialis-CCMP134.pep --tblout CENP-X-hmmscan-Asterionellopsis-glacialis-CCMP134.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Asterionellopsis-glacialis-CCMP134.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Astrosyne-radiata-13vi08-1A.pep --tblout CENP-X-hmmscan-Astrosyne-radiata-13vi08-1A.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Astrosyne-radiata-13vi08-1A.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Attheya-septentrionalis-CCMP2084.pep --tblout CENP-X-hmmscan-Attheya-septentrionalis-CCMP2084.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Attheya-septentrionalis-CCMP2084.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep --tblout CENP-X-hmmscan-Aulacoseira-subarctica-CCAP-1002-5.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aulacoseira-subarctica-CCAP-1002-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep --tblout CENP-X-hmmscan-Aurantiochytrium-limacinum-ATCCMYA1381.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aurantiochytrium-limacinum-ATCCMYA1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep --tblout CENP-X-hmmscan-Aureococcus-anophagefferens-CCMP1850.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureococcus-anophagefferens-CCMP1850.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep --tblout CENP-X-hmmscan-Aureoumbra-lagunensis-CCMP1510.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Aureoumbra-lagunensis-CCMP1510.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Azadinium-spinosum-3D9.pep --tblout CENP-X-hmmscan-Azadinium-spinosum-3D9.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Azadinium-spinosum-3D9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Bathycoccus-prasinos-CCMP1898.pep --tblout CENP-X-hmmscan-Bathycoccus-prasinos-CCMP1898.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-CCMP1898.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Bathycoccus-prasinos-RCC716.pep --tblout CENP-X-hmmscan-Bathycoccus-prasinos-RCC716.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bathycoccus-prasinos-RCC716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Bicosoecid-sp-ms1.pep --tblout CENP-X-hmmscan-Bicosoecid-sp-ms1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bicosoecid-sp-ms1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Bigelowiella-natans-CCMP-2755.pep --tblout CENP-X-hmmscan-Bigelowiella-natans-CCMP-2755.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP-2755.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Bigelowiella-natans-CCMP1258.1.pep --tblout CENP-X-hmmscan-Bigelowiella-natans-CCMP1258.1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1258.1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Bigelowiella-natans-CCMP1259.pep --tblout CENP-X-hmmscan-Bigelowiella-natans-CCMP1259.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP1259.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Bigelowiella-natans-CCMP623.pep --tblout CENP-X-hmmscan-Bigelowiella-natans-CCMP623.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bigelowiella-natans-CCMP623.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Blepharisma-japonicum-Stock-R1072.pep --tblout CENP-X-hmmscan-Blepharisma-japonicum-Stock-R1072.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Blepharisma-japonicum-Stock-R1072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep --tblout CENP-X-hmmscan-Bolidomonas-pacifica-CCMP-1866.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Bolidomonas-pacifica-CCMP-1866.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Brandtodinium-nutriculum-RCC3387.pep --tblout CENP-X-hmmscan-Brandtodinium-nutriculum-RCC3387.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Brandtodinium-nutriculum-RCC3387.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Cafeteria-roenbergensis-E4-10.pep --tblout CENP-X-hmmscan-Cafeteria-roenbergensis-E4-10.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-roenbergensis-E4-10.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep --tblout CENP-X-hmmscan-Cafeteria-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cafeteria-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Calcidiscus-leptoporus-RCC1130.pep --tblout CENP-X-hmmscan-Calcidiscus-leptoporus-RCC1130.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Calcidiscus-leptoporus-RCC1130.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Ceratium-fusus-PA161109.pep --tblout CENP-X-hmmscan-Ceratium-fusus-PA161109.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ceratium-fusus-PA161109.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chaetoceros-affinis-CCMP159.pep --tblout CENP-X-hmmscan-Chaetoceros-affinis-CCMP159.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-affinis-CCMP159.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chaetoceros-curvisetus.pep --tblout CENP-X-hmmscan-Chaetoceros-curvisetus.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-curvisetus.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chaetoceros-debilis-MM31A_1.pep --tblout CENP-X-hmmscan-Chaetoceros-debilis-MM31A_1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-debilis-MM31A_1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chaetoceros-neogracile-CCMP1317.pep --tblout CENP-X-hmmscan-Chaetoceros-neogracile-CCMP1317.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chaetoceros-neogracile-CCMP1317.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chattonella-subsalsa-CCMP2191.pep --tblout CENP-X-hmmscan-Chattonella-subsalsa-CCMP2191.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chattonella-subsalsa-CCMP2191.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep --tblout CENP-X-hmmscan-Chlamydomonas-cf-sp-CCMP681.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlamydomonas-cf-sp-CCMP681.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chlorarachnion-reptans-CCCM449.pep --tblout CENP-X-hmmscan-Chlorarachnion-reptans-CCCM449.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chlorarachnion-reptans-CCCM449.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chromera-velia-CCMP2878.pep --tblout CENP-X-hmmscan-Chromera-velia-CCMP2878.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromera-velia-CCMP2878.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep --tblout CENP-X-hmmscan-Chromulina-nebulosa-UTEXLB2642.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chromulina-nebulosa-UTEXLB2642.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep --tblout CENP-X-hmmscan-Chroomonas-mesostigmatica_cf-CCMP1168.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chroomonas-mesostigmatica_cf-CCMP1168.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep --tblout CENP-X-hmmscan-Chrysochromulina-brevifilum-UTEX-LB-985.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-brevifilum-UTEX-LB-985.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chrysochromulina-ericina-CCMP281.pep --tblout CENP-X-hmmscan-Chrysochromulina-ericina-CCMP281.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-ericina-CCMP281.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep --tblout CENP-X-hmmscan-Chrysochromulina-polylepis-CCMP1757.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysochromulina-polylepis-CCMP1757.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep --tblout CENP-X-hmmscan-Chrysoculter-rhomboideus-RCC1486.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoculter-rhomboideus-RCC1486.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chrysocystis-fragilis-CCMP3189.pep --tblout CENP-X-hmmscan-Chrysocystis-fragilis-CCMP3189.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysocystis-fragilis-CCMP3189.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep --tblout CENP-X-hmmscan-Chrysoreinhardia-sp-CCMP2950.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP2950.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep --tblout CENP-X-hmmscan-Chrysoreinhardia-sp-CCMP3193.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Chrysoreinhardia-sp-CCMP3193.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep --tblout CENP-X-hmmscan-Climacostomum-Climacostomum-virens-Stock-W-24.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Climacostomum-Climacostomum-virens-Stock-W-24.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep --tblout CENP-X-hmmscan-Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coccolithus-pelagicus-ssp-braarudi-PLY182g.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep --tblout CENP-X-hmmscan-Compsopogon-coeruleus-SAG-36.94.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Compsopogon-coeruleus-SAG-36.94.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Condylostoma-magnum-COL2.pep --tblout CENP-X-hmmscan-Condylostoma-magnum-COL2.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Condylostoma-magnum-COL2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Corethron-pennatum-L29A3.pep --tblout CENP-X-hmmscan-Corethron-pennatum-L29A3.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Corethron-pennatum-L29A3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep --tblout CENP-X-hmmscan-Coscinodiscus-wailesii-CCMP2513.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Coscinodiscus-wailesii-CCMP2513.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Craspedostauros-australis-CCMP3328.pep --tblout CENP-X-hmmscan-Craspedostauros-australis-CCMP3328.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Craspedostauros-australis-CCMP3328.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Crustomastix-stigmata-CCMP3273.pep --tblout CENP-X-hmmscan-Crustomastix-stigmata-CCMP3273.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crustomastix-stigmata-CCMP3273.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Crypthecodinium-cohnii-Seligo.pep --tblout CENP-X-hmmscan-Crypthecodinium-cohnii-Seligo.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Crypthecodinium-cohnii-Seligo.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Cryptomonas-curvata-CCAP979-52.pep --tblout CENP-X-hmmscan-Cryptomonas-curvata-CCAP979-52.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-curvata-CCAP979-52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep --tblout CENP-X-hmmscan-Cryptomonas-paramecium-CCAP977-2a.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cryptomonas-paramecium-CCAP977-2a.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep --tblout CENP-X-hmmscan-Cyanoptyche-gloeocystis-SAG4.97.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyanoptyche-gloeocystis-SAG4.97.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Cyclophora-tenuis-ECT3854.pep --tblout CENP-X-hmmscan-Cyclophora-tenuis-ECT3854.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclophora-tenuis-ECT3854.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep --tblout CENP-X-hmmscan-Cyclotella-meneghiniana-CCMP-338.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cyclotella-meneghiniana-CCMP-338.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep --tblout CENP-X-hmmscan-Cylindrotheca-closterium-KMMCC:B-181.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Cylindrotheca-closterium-KMMCC:B-181.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep --tblout CENP-X-hmmscan-Dactyliosolen-fragilissimus-Unknown.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dactyliosolen-fragilissimus-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Debaryomyces-hansenii-J26.pep --tblout CENP-X-hmmscan-Debaryomyces-hansenii-J26.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Debaryomyces-hansenii-J26.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Detonula-confervacea-CCMP-353.pep --tblout CENP-X-hmmscan-Detonula-confervacea-CCMP-353.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Detonula-confervacea-CCMP-353.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Dictyocha-speculum-CCMP1381.pep --tblout CENP-X-hmmscan-Dictyocha-speculum-CCMP1381.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dictyocha-speculum-CCMP1381.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Dinobryon-sp-UTEXLB2267.pep --tblout CENP-X-hmmscan-Dinobryon-sp-UTEXLB2267.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinobryon-sp-UTEXLB2267.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Dinophysis-acuminata-DAEP01.pep --tblout CENP-X-hmmscan-Dinophysis-acuminata-DAEP01.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dinophysis-acuminata-DAEP01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Ditylum-brightwellii-GSO103.pep --tblout CENP-X-hmmscan-Ditylum-brightwellii-GSO103.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Ditylum-brightwellii-GSO104.pep --tblout CENP-X-hmmscan-Ditylum-brightwellii-GSO104.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Ditylum-brightwellii-GSO105.pep --tblout CENP-X-hmmscan-Ditylum-brightwellii-GSO105.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ditylum-brightwellii-GSO105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep --tblout CENP-X-hmmscan-Dolichomastix-tenuilepis-CCMP3274.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dolichomastix-tenuilepis-CCMP3274.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep --tblout CENP-X-hmmscan-Dunaliella-tertiolecta-CCMP1320.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Dunaliella-tertiolecta-CCMP1320.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep --tblout CENP-X-hmmscan-Durinskia-baltica-CSIRO_CS-38.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Durinskia-baltica-CSIRO_CS-38.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Elphidium-margaritaceum-Unknown.pep --tblout CENP-X-hmmscan-Elphidium-margaritaceum-Unknown.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Elphidium-margaritaceum-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Emiliania-huxleyi-374.pep --tblout CENP-X-hmmscan-Emiliania-huxleyi-374.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-374.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Emiliania-huxleyi-379.pep --tblout CENP-X-hmmscan-Emiliania-huxleyi-379.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-379.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Emiliania-huxleyi-CCMP370.pep --tblout CENP-X-hmmscan-Emiliania-huxleyi-CCMP370.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-CCMP370.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Emiliania-huxleyi-PLYM219.pep --tblout CENP-X-hmmscan-Emiliania-huxleyi-PLYM219.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Emiliania-huxleyi-PLYM219.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Entomoneis-sp.-CCMP2396.pep --tblout CENP-X-hmmscan-Entomoneis-sp.-CCMP2396.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Entomoneis-sp.-CCMP2396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Erythrolobus-australicus-CCMP3124.pep --tblout CENP-X-hmmscan-Erythrolobus-australicus-CCMP3124.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-australicus-CCMP3124.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep --tblout CENP-X-hmmscan-Erythrolobus-madagascarensis-CCMP3276.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Erythrolobus-madagascarensis-CCMP3276.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Eucampia-antarctica-CCMP1452.pep --tblout CENP-X-hmmscan-Eucampia-antarctica-CCMP1452.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eucampia-antarctica-CCMP1452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Euplotes-focardii-TN1.pep --tblout CENP-X-hmmscan-Euplotes-focardii-TN1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-focardii-TN1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Euplotes-harpa-FSP1.4.pep --tblout CENP-X-hmmscan-Euplotes-harpa-FSP1.4.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Euplotes-harpa-FSP1.4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep --tblout CENP-X-hmmscan-Eutreptiella-gymnastica_like-CCMP1594.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Eutreptiella-gymnastica_like-CCMP1594.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep --tblout CENP-X-hmmscan-Exanthemachrysis-gayraliae-RCC1523.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Exanthemachrysis-gayraliae-RCC1523.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Extubocellulus-spinifer-CCMP396.pep --tblout CENP-X-hmmscan-Extubocellulus-spinifer-CCMP396.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Extubocellulus-spinifer-CCMP396.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Fabrea-Fabrea-salina-Unknown.pep --tblout CENP-X-hmmscan-Fabrea-Fabrea-salina-Unknown.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fabrea-Fabrea-salina-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep --tblout CENP-X-hmmscan-Favella_taraikaensis_FeNarragansettBay.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Favella_taraikaensis_FeNarragansettBay.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Fibrocapsa-japonica-CCMP1661.pep --tblout CENP-X-hmmscan-Fibrocapsa-japonica-CCMP1661.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fibrocapsa-japonica-CCMP1661.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep --tblout CENP-X-hmmscan-Filamoeba-nolandi-NC-AS-23-1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Filamoeba-nolandi-NC-AS-23-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Florenciella-parvula-CCMP2471.pep --tblout CENP-X-hmmscan-Florenciella-parvula-CCMP2471.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-CCMP2471.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Florenciella-parvula-RCC1693.pep --tblout CENP-X-hmmscan-Florenciella-parvula-RCC1693.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-parvula-RCC1693.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Florenciella-sp.-RCC1007.pep --tblout CENP-X-hmmscan-Florenciella-sp.-RCC1007.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Florenciella-sp.-RCC1007.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep --tblout CENP-X-hmmscan-Fragilariopsis-kerguelensis-L26_C5.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L26_C5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep --tblout CENP-X-hmmscan-Fragilariopsis-kerguelensis-L2_C3.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Fragilariopsis-kerguelensis-L2_C3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Gambierdiscus-australes-CAWD-149.pep --tblout CENP-X-hmmscan-Gambierdiscus-australes-CAWD-149.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gambierdiscus-australes-CAWD-149.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Geminigera-cryophila-CCMP2564.pep --tblout CENP-X-hmmscan-Geminigera-cryophila-CCMP2564.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-cryophila-CCMP2564.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep --tblout CENP-X-hmmscan-Geminigera-sp.-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Geminigera-sp.-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep --tblout CENP-X-hmmscan-Gephyrocapsa-oceanica-RCC1303.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gephyrocapsa-oceanica-RCC1303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep --tblout CENP-X-hmmscan-Glenodinium-foliaceum-CCAP1116_3.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Glenodinium-foliaceum-CCAP1116_3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep --tblout CENP-X-hmmscan-Gloeochaete-witrockiana-SAG46_84.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gloeochaete-witrockiana-SAG46_84.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Goniomonas-pacifica-CCMP1869.pep --tblout CENP-X-hmmscan-Goniomonas-pacifica-CCMP1869.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Goniomonas-pacifica-CCMP1869.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Gonyaulax-spinifera-CCMP409.pep --tblout CENP-X-hmmscan-Gonyaulax-spinifera-CCMP409.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gonyaulax-spinifera-CCMP409.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Grammatophora-oceanica-CCMP-410.pep --tblout CENP-X-hmmscan-Grammatophora-oceanica-CCMP-410.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Grammatophora-oceanica-CCMP-410.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Guillardia-theta-CCMP-2712.pep --tblout CENP-X-hmmscan-Guillardia-theta-CCMP-2712.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Guillardia-theta-CCMP-2712.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Gymnochlora-sp.-CCMP2014.pep --tblout CENP-X-hmmscan-Gymnochlora-sp.-CCMP2014.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnochlora-sp.-CCMP2014.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Gymnodinium-catenatum-GC744.pep --tblout CENP-X-hmmscan-Gymnodinium-catenatum-GC744.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gymnodinium-catenatum-GC744.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Gyrodinium-dominans-SPMC-103.pep --tblout CENP-X-hmmscan-Gyrodinium-dominans-SPMC-103.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Gyrodinium-dominans-SPMC-103.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Hanusia-phi-CCMP325.pep --tblout CENP-X-hmmscan-Hanusia-phi-CCMP325.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hanusia-phi-CCMP325.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Helicotheca-tamensis-CCMP826.pep --tblout CENP-X-hmmscan-Helicotheca-tamensis-CCMP826.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Helicotheca-tamensis-CCMP826.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Hemiselmis-andersenii-CCMP644.pep --tblout CENP-X-hmmscan-Hemiselmis-andersenii-CCMP644.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-andersenii-CCMP644.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Hemiselmis-rufescens-PCC563.pep --tblout CENP-X-hmmscan-Hemiselmis-rufescens-PCC563.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-rufescens-PCC563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Hemiselmis-tepida-CCMP443.pep --tblout CENP-X-hmmscan-Hemiselmis-tepida-CCMP443.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-tepida-CCMP443.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Hemiselmis-viresens-PCC157.pep --tblout CENP-X-hmmscan-Hemiselmis-viresens-PCC157.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Hemiselmis-viresens-PCC157.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep --tblout CENP-X-hmmscan-Heterocapsa-rotundata-SCCAP-K-0483.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-rotundata-SCCAP-K-0483.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Heterocapsa-triquestra-CCMP-448.pep --tblout CENP-X-hmmscan-Heterocapsa-triquestra-CCMP-448.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterocapsa-triquestra-CCMP-448.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Heterosigma-akashiwo-CCMP2393.pep --tblout CENP-X-hmmscan-Heterosigma-akashiwo-CCMP2393.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP2393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Heterosigma-akashiwo-CCMP3107.pep --tblout CENP-X-hmmscan-Heterosigma-akashiwo-CCMP3107.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP3107.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Heterosigma-akashiwo-CCMP452.pep --tblout CENP-X-hmmscan-Heterosigma-akashiwo-CCMP452.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-CCMP452.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Heterosigma-akashiwo-NB.pep --tblout CENP-X-hmmscan-Heterosigma-akashiwo-NB.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Heterosigma-akashiwo-NB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Imantonia-sp.-RCC918.pep --tblout CENP-X-hmmscan-Imantonia-sp.-RCC918.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Imantonia-sp.-RCC918.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Isochrysis-galbana-CCMP1323.pep --tblout CENP-X-hmmscan-Isochrysis-galbana-CCMP1323.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-galbana-CCMP1323.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Isochrysis-sp-CCMP1244.pep --tblout CENP-X-hmmscan-Isochrysis-sp-CCMP1244.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1244.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Isochrysis-sp-CCMP1324.pep --tblout CENP-X-hmmscan-Isochrysis-sp-CCMP1324.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Isochrysis-sp-CCMP1324.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Karenia-brevis-CCMP2229.pep --tblout CENP-X-hmmscan-Karenia-brevis-CCMP2229.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-CCMP2229.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Karenia-brevis-SP1.pep --tblout CENP-X-hmmscan-Karenia-brevis-SP1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Karenia-brevis-SP3.pep --tblout CENP-X-hmmscan-Karenia-brevis-SP3.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-SP3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Karenia-brevis-Wilson.pep --tblout CENP-X-hmmscan-Karenia-brevis-Wilson.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karenia-brevis-Wilson.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Karlodinium-micrum-CCMP2283.pep --tblout CENP-X-hmmscan-Karlodinium-micrum-CCMP2283.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Karlodinium-micrum-CCMP2283.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep --tblout CENP-X-hmmscan-Kryptoperidinium-foliaceum-CCMP1326.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Kryptoperidinium-foliaceum-CCMP1326.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep --tblout CENP-X-hmmscan-Lankesteria-abbottii-Grappler-Inlet-BC.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lankesteria-abbottii-Grappler-Inlet-BC.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep --tblout CENP-X-hmmscan-Leptocylindrus-danicus-var.-apora-B651.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-apora-B651.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep --tblout CENP-X-hmmscan-Leptocylindrus-danicus-var.-danicus-B650.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Leptocylindrus-danicus-var.-danicus-B650.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Lessardia-elongata-SPMC-104.pep --tblout CENP-X-hmmscan-Lessardia-elongata-SPMC-104.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lessardia-elongata-SPMC-104.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Licmophora-paradoxa-CCMP2313.pep --tblout CENP-X-hmmscan-Licmophora-paradoxa-CCMP2313.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Licmophora-paradoxa-CCMP2313.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Lingulodinium-polyedra-CCMP1738.pep --tblout CENP-X-hmmscan-Lingulodinium-polyedra-CCMP1738.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lingulodinium-polyedra-CCMP1738.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Litonotus-pictus-P1.pep --tblout CENP-X-hmmscan-Litonotus-pictus-P1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Litonotus-pictus-P1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Lotharella-amoebiformis-CCMP2058.pep --tblout CENP-X-hmmscan-Lotharella-amoebiformis-CCMP2058.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-amoebiformis-CCMP2058.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Lotharella-globosa-CCCM811.pep --tblout CENP-X-hmmscan-Lotharella-globosa-CCCM811.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-globosa-CCCM811.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Lotharella-oceanica-CCMP622.pep --tblout CENP-X-hmmscan-Lotharella-oceanica-CCMP622.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Lotharella-oceanica-CCMP622.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep --tblout CENP-X-hmmscan-Madagascaria-erythrocladiodes-CCMP3234.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Madagascaria-erythrocladiodes-CCMP3234.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Mallomonas-Sp-CCMP3275.pep --tblout CENP-X-hmmscan-Mallomonas-Sp-CCMP3275.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mallomonas-Sp-CCMP3275.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Mantoniella-antarctica-SL-175.pep --tblout CENP-X-hmmscan-Mantoniella-antarctica-SL-175.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-antarctica-SL-175.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Mantoniella-sp-CCMP1436.pep --tblout CENP-X-hmmscan-Mantoniella-sp-CCMP1436.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mantoniella-sp-CCMP1436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Mayorella-sp-BSH-02190019.pep --tblout CENP-X-hmmscan-Mayorella-sp-BSH-02190019.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mayorella-sp-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Mesodinium-pulex-SPMC105.pep --tblout CENP-X-hmmscan-Mesodinium-pulex-SPMC105.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Mesodinium-pulex-SPMC105.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Micromonas-sp-CCMP2099.pep --tblout CENP-X-hmmscan-Micromonas-sp-CCMP2099.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-CCMP2099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Micromonas-sp-NEPCC29.pep --tblout CENP-X-hmmscan-Micromonas-sp-NEPCC29.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-NEPCC29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Micromonas-sp-RCC472.pep --tblout CENP-X-hmmscan-Micromonas-sp-RCC472.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Micromonas-sp-RCC472.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Minchinia-chitonis-Unknown.pep --tblout CENP-X-hmmscan-Minchinia-chitonis-Unknown.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minchinia-chitonis-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Minutocellus-polymorphus-CCMP3303.pep --tblout CENP-X-hmmscan-Minutocellus-polymorphus-CCMP3303.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-CCMP3303.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Minutocellus-polymorphus-NH13.pep --tblout CENP-X-hmmscan-Minutocellus-polymorphus-NH13.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-NH13.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Minutocellus-polymorphus-RCC2270.pep --tblout CENP-X-hmmscan-Minutocellus-polymorphus-RCC2270.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Minutocellus-polymorphus-RCC2270.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Myrionecta-rubra-CCMP2563.pep --tblout CENP-X-hmmscan-Myrionecta-rubra-CCMP2563.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Myrionecta-rubra-CCMP2563.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Neobodo-designis-CCAP-1951-1.pep --tblout CENP-X-hmmscan-Neobodo-designis-CCAP-1951-1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neobodo-designis-CCAP-1951-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep --tblout CENP-X-hmmscan-Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Neoparamoeba-aestuarina-SoJaBio-B1-5-56-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Nephroselmis-pyriformis-CCMP717.pep --tblout CENP-X-hmmscan-Nephroselmis-pyriformis-CCMP717.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nephroselmis-pyriformis-CCMP717.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Nitzschia-punctata-CCMP561.pep --tblout CENP-X-hmmscan-Nitzschia-punctata-CCMP561.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Nitzschia-punctata-CCMP561.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Noctiluca-scintillans-Unknown.pep --tblout CENP-X-hmmscan-Noctiluca-scintillans-Unknown.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Noctiluca-scintillans-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Norrisiella-sphaerica-BC52.pep --tblout CENP-X-hmmscan-Norrisiella-sphaerica-BC52.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Norrisiella-sphaerica-BC52.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Ochromonas-sp-CCMP1393.pep --tblout CENP-X-hmmscan-Ochromonas-sp-CCMP1393.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Ochromonas-sp-CCMP1393.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Odontella-Sinensis-Grunow-1884.pep --tblout CENP-X-hmmscan-Odontella-Sinensis-Grunow-1884.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-Sinensis-Grunow-1884.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Odontella-aurita-isolate-1302-5.pep --tblout CENP-X-hmmscan-Odontella-aurita-isolate-1302-5.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Odontella-aurita-isolate-1302-5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Oxyrrhis-marina-CCMP1795.pep --tblout CENP-X-hmmscan-Oxyrrhis-marina-CCMP1795.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-CCMP1795.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Oxyrrhis-marina-LB1974.pep --tblout CENP-X-hmmscan-Oxyrrhis-marina-LB1974.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina-LB1974.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Oxyrrhis-marina.pep --tblout CENP-X-hmmscan-Oxyrrhis-marina.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Oxyrrhis-marina.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Palpitomonas-bilix-NIES-2562.pep --tblout CENP-X-hmmscan-Palpitomonas-bilix-NIES-2562.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Palpitomonas-bilix-NIES-2562.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep --tblout CENP-X-hmmscan-Paramoeba-atlantica-621-1---CCAP-1560-9.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paramoeba-atlantica-621-1---CCAP-1560-9.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep --tblout CENP-X-hmmscan-Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-bandaiensis-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Paraphysomonas-imperforata-PA2.pep --tblout CENP-X-hmmscan-Paraphysomonas-imperforata-PA2.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Paraphysomonas-imperforata-PA2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Partenskyella-glossopodia-RCC365.pep --tblout CENP-X-hmmscan-Partenskyella-glossopodia-RCC365.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Partenskyella-glossopodia-RCC365.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pavlova-sp-CCMP459.pep --tblout CENP-X-hmmscan-Pavlova-sp-CCMP459.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pavlova-sp-CCMP459.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pelagococcus-subviridis-CCMP1429.pep --tblout CENP-X-hmmscan-Pelagococcus-subviridis-CCMP1429.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagococcus-subviridis-CCMP1429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pelagodinium-beii-RCC1491.pep --tblout CENP-X-hmmscan-Pelagodinium-beii-RCC1491.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagodinium-beii-RCC1491.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pelagomonas-calceolata-CCMP1756.pep --tblout CENP-X-hmmscan-Pelagomonas-calceolata-CCMP1756.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pelagomonas-calceolata-CCMP1756.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep --tblout CENP-X-hmmscan-Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-AE-1-ATCC-50343.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Percolomonas-cosmopolitus-WS.pep --tblout CENP-X-hmmscan-Percolomonas-cosmopolitus-WS.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Percolomonas-cosmopolitus-WS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Peridinium-aciculiferum-PAER_2.pep --tblout CENP-X-hmmscan-Peridinium-aciculiferum-PAER_2.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Peridinium-aciculiferum-PAER_2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep --tblout CENP-X-hmmscan-Perkinsus-chesapeaki-ATCC_PRA_65.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-chesapeaki-ATCC_PRA_65.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Perkinsus-marinus-ATCC50439.pep --tblout CENP-X-hmmscan-Perkinsus-marinus-ATCC50439.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Perkinsus-marinus-ATCC50439.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pessonella-sp.-PRA-29.pep --tblout CENP-X-hmmscan-Pessonella-sp.-PRA-29.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pessonella-sp.-PRA-29.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Phaeocystis-Sp-CCMP2710.pep --tblout CENP-X-hmmscan-Phaeocystis-Sp-CCMP2710.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-Sp-CCMP2710.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep --tblout CENP-X-hmmscan-Phaeocystis-antarctica-Caron-Lab-Isolate.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeocystis-antarctica-Caron-Lab-Isolate.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Phaeomonas-parva-CCMP2877.pep --tblout CENP-X-hmmscan-Phaeomonas-parva-CCMP2877.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Phaeomonas-parva-CCMP2877.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep --tblout CENP-X-hmmscan-Picochlorum-oklahomensis-CCMP2329.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-oklahomensis-CCMP2329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Picochlorum-sp.-RCC944.pep --tblout CENP-X-hmmscan-Picochlorum-sp.-RCC944.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picochlorum-sp.-RCC944.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Picocystis-salinarum-CCMP1897.pep --tblout CENP-X-hmmscan-Picocystis-salinarum-CCMP1897.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Picocystis-salinarum-CCMP1897.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep --tblout CENP-X-hmmscan-Pinguiococcus-pyrenoidosus-CCMP2078.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pinguiococcus-pyrenoidosus-CCMP2078.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Platyophrya-macrostoma-WH.pep --tblout CENP-X-hmmscan-Platyophrya-macrostoma-WH.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Platyophrya-macrostoma-WH.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pleurochrysis-carterae-CCMP645.pep --tblout CENP-X-hmmscan-Pleurochrysis-carterae-CCMP645.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pleurochrysis-carterae-CCMP645.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Polarella-glacialis-CCMP-1383.pep --tblout CENP-X-hmmscan-Polarella-glacialis-CCMP-1383.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polarella-glacialis-CCMP-1383.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Polytomella-parva-SAG-63-3.pep --tblout CENP-X-hmmscan-Polytomella-parva-SAG-63-3.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Polytomella-parva-SAG-63-3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep --tblout CENP-X-hmmscan-Porphyridium-aerugineum-SAG-1380-2.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Porphyridium-aerugineum-SAG-1380-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Prasinoderma-coloniale-CCMP1413.pep --tblout CENP-X-hmmscan-Prasinoderma-coloniale-CCMP1413.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-coloniale-CCMP1413.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Prasinoderma-singularis-RCC927.pep --tblout CENP-X-hmmscan-Prasinoderma-singularis-RCC927.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prasinoderma-singularis-RCC927.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Proboscia-alata-PI_D3.pep --tblout CENP-X-hmmscan-Proboscia-alata-PI_D3.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proboscia-alata-PI_D3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Prorocentrum-minimum-CCMP1329.pep --tblout CENP-X-hmmscan-Prorocentrum-minimum-CCMP1329.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP1329.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Prorocentrum-minimum-CCMP2233.pep --tblout CENP-X-hmmscan-Prorocentrum-minimum-CCMP2233.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prorocentrum-minimum-CCMP2233.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Proteomonas-sulcata-CCMP704.pep --tblout CENP-X-hmmscan-Proteomonas-sulcata-CCMP704.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Proteomonas-sulcata-CCMP704.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep --tblout CENP-X-hmmscan-Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protoceratium-reticulatum-CCCM-535-CCMP-1889.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Protocruzia-adherens-Boccale.pep --tblout CENP-X-hmmscan-Protocruzia-adherens-Boccale.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Protocruzia-adherens-Boccale.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Prymnesium-parvum-Texoma1.pep --tblout CENP-X-hmmscan-Prymnesium-parvum-Texoma1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Prymnesium-parvum-Texoma1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep --tblout CENP-X-hmmscan-Pseudo_nitzschia-australis-10249_10_AB.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-australis-10249_10_AB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep --tblout CENP-X-hmmscan-Pseudo_nitzschia-fradulenta-WWA7.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudo_nitzschia-fradulenta-WWA7.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep --tblout CENP-X-hmmscan-Pseudokeronopsis-sp.-OXSARD2.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudokeronopsis-sp.-OXSARD2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pseudopedinella-elastica-CCMP716.pep --tblout CENP-X-hmmscan-Pseudopedinella-elastica-CCMP716.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pseudopedinella-elastica-CCMP716.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pteridomonas-danica-PT.pep --tblout CENP-X-hmmscan-Pteridomonas-danica-PT.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pteridomonas-danica-PT.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pterosperma-sp.-CCMP1384.pep --tblout CENP-X-hmmscan-Pterosperma-sp.-CCMP1384.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pterosperma-sp.-CCMP1384.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pycnococcus-provasolii-RCC2336.pep --tblout CENP-X-hmmscan-Pycnococcus-provasolii-RCC2336.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC2336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pycnococcus-provasolii-RCC931.pep --tblout CENP-X-hmmscan-Pycnococcus-provasolii-RCC931.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pycnococcus-provasolii-RCC931.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pyramimonas-parkeae-CCMP726.pep --tblout CENP-X-hmmscan-Pyramimonas-parkeae-CCMP726.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyramimonas-parkeae-CCMP726.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pyrocystis-lunula-CCCM-517.pep --tblout CENP-X-hmmscan-Pyrocystis-lunula-CCCM-517.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrocystis-lunula-CCCM-517.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Pyrodinium-bahamense-pbaha01.pep --tblout CENP-X-hmmscan-Pyrodinium-bahamense-pbaha01.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Pyrodinium-bahamense-pbaha01.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep --tblout CENP-X-hmmscan-Rhizochromulina-marina-cf-CCMP1243.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizochromulina-marina-cf-CCMP1243.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep --tblout CENP-X-hmmscan-Rhizosolenia-setigera-CCMP-1694.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhizosolenia-setigera-CCMP-1694.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Rhodella-maculata-CCMP736.pep --tblout CENP-X-hmmscan-Rhodella-maculata-CCMP736.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodella-maculata-CCMP736.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Rhodomonas-lens-RHODO.pep --tblout CENP-X-hmmscan-Rhodomonas-lens-RHODO.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-lens-RHODO.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Rhodomonas-sp-CCMP768.pep --tblout CENP-X-hmmscan-Rhodomonas-sp-CCMP768.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodomonas-sp-CCMP768.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Rhodosorus-marinus-CCMP-769.pep --tblout CENP-X-hmmscan-Rhodosorus-marinus-CCMP-769.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rhodosorus-marinus-CCMP-769.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Rosalina-sp.-Unknown.pep --tblout CENP-X-hmmscan-Rosalina-sp.-Unknown.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Rosalina-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Sarcinochrysis-sp-CCMP770.pep --tblout CENP-X-hmmscan-Sarcinochrysis-sp-CCMP770.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sarcinochrysis-sp-CCMP770.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep --tblout CENP-X-hmmscan-Schizochytrium-aggregatum-ATCC28209.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Schizochytrium-aggregatum-ATCC28209.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Scrippsiella-hangoei-SHTV5.pep --tblout CENP-X-hmmscan-Scrippsiella-hangoei-SHTV5.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei-SHTV5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep --tblout CENP-X-hmmscan-Scrippsiella-hangoei_like-SHHI_4.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-hangoei_like-SHHI_4.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep --tblout CENP-X-hmmscan-Scrippsiella-trochoidea-CCMP3099.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scrippsiella-trochoidea-CCMP3099.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep --tblout CENP-X-hmmscan-Scyphosphaera-apsteinii-RCC1455.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Scyphosphaera-apsteinii-RCC1455.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Sexangularia-sp.-ATCC50979.pep --tblout CENP-X-hmmscan-Sexangularia-sp.-ATCC50979.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sexangularia-sp.-ATCC50979.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Skeletonema-dohrnii-SkelB.pep --tblout CENP-X-hmmscan-Skeletonema-dohrnii-SkelB.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-dohrnii-SkelB.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Skeletonema-marinoi-SkelA.pep --tblout CENP-X-hmmscan-Skeletonema-marinoi-SkelA.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-marinoi-SkelA.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Skeletonema-menzelii-CCMP793.pep --tblout CENP-X-hmmscan-Skeletonema-menzelii-CCMP793.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Skeletonema-menzelii-CCMP793.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Sorites-sp.-Unknown.pep --tblout CENP-X-hmmscan-Sorites-sp.-Unknown.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Sorites-sp.-Unknown.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Spumella-elongata-CCAP-955-1.pep --tblout CENP-X-hmmscan-Spumella-elongata-CCAP-955-1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Spumella-elongata-CCAP-955-1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Stauroneis-constricta-CCMP1120.pep --tblout CENP-X-hmmscan-Stauroneis-constricta-CCMP1120.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stauroneis-constricta-CCMP1120.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Staurosira-complex-sp.-CCMP2646.pep --tblout CENP-X-hmmscan-Staurosira-complex-sp.-CCMP2646.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Staurosira-complex-sp.-CCMP2646.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Stephanopyxis-turris-CCMP-815.pep --tblout CENP-X-hmmscan-Stephanopyxis-turris-CCMP-815.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stephanopyxis-turris-CCMP-815.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Stereomyxa-ramosa-Chinc5.pep --tblout CENP-X-hmmscan-Stereomyxa-ramosa-Chinc5.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stereomyxa-ramosa-Chinc5.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Stichococcus-sp-RCC1054.pep --tblout CENP-X-hmmscan-Stichococcus-sp-RCC1054.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stichococcus-sp-RCC1054.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Striatella-unipunctata-CCMP2910.pep --tblout CENP-X-hmmscan-Striatella-unipunctata-CCMP2910.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Striatella-unipunctata-CCMP2910.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep --tblout CENP-X-hmmscan-Strombidinopsis-acuminatum-SPMC142.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-acuminatum-SPMC142.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep --tblout CENP-X-hmmscan-Strombidinopsis-sp-SopsisLIS2011.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidinopsis-sp-SopsisLIS2011.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Strombidium-inclinatum-S3.pep --tblout CENP-X-hmmscan-Strombidium-inclinatum-S3.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-inclinatum-S3.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Strombidium-rassoulzadegani-ras09.pep --tblout CENP-X-hmmscan-Strombidium-rassoulzadegani-ras09.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Strombidium-rassoulzadegani-ras09.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Stygamoeba-regulata-BSH-02190019.pep --tblout CENP-X-hmmscan-Stygamoeba-regulata-BSH-02190019.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Stygamoeba-regulata-BSH-02190019.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep --tblout CENP-X-hmmscan-Symbiodinium-kawagutii-CCMP2468.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-kawagutii-CCMP2468.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Symbiodinium-sp-C1.pep --tblout CENP-X-hmmscan-Symbiodinium-sp-C1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Symbiodinium-sp-C15.pep --tblout CENP-X-hmmscan-Symbiodinium-sp-C15.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-C15.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Symbiodinium-sp-CCMP2430.pep --tblout CENP-X-hmmscan-Symbiodinium-sp-CCMP2430.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-CCMP2430.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Symbiodinium-sp-Mp.pep --tblout CENP-X-hmmscan-Symbiodinium-sp-Mp.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Symbiodinium-sp-Mp.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Synchroma-pusillum-CCMP3072.pep --tblout CENP-X-hmmscan-Synchroma-pusillum-CCMP3072.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synchroma-pusillum-CCMP3072.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Synedropsis-recta-cf-CCMP1620.pep --tblout CENP-X-hmmscan-Synedropsis-recta-cf-CCMP1620.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Synedropsis-recta-cf-CCMP1620.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Tetraselmis-chuii-PLY429.pep --tblout CENP-X-hmmscan-Tetraselmis-chuii-PLY429.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-chuii-PLY429.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Tetraselmis-striata-LANL1001.pep --tblout CENP-X-hmmscan-Tetraselmis-striata-LANL1001.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tetraselmis-striata-LANL1001.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep --tblout CENP-X-hmmscan-Thalassionema-frauenfeldii-CCMP-1798.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-frauenfeldii-CCMP-1798.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassionema-nitzschioides-L26_B.pep --tblout CENP-X-hmmscan-Thalassionema-nitzschioides-L26_B.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassionema-nitzschioides-L26_B.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiosira-antarctica-CCMP982.pep --tblout CENP-X-hmmscan-Thalassiosira-antarctica-CCMP982.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-antarctica-CCMP982.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiosira-gravida-GMp14c1.pep --tblout CENP-X-hmmscan-Thalassiosira-gravida-GMp14c1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-gravida-GMp14c1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiosira-miniscula-CCMP1093.pep --tblout CENP-X-hmmscan-Thalassiosira-miniscula-CCMP1093.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-miniscula-CCMP1093.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiosira-oceanica-CCMP1005.pep --tblout CENP-X-hmmscan-Thalassiosira-oceanica-CCMP1005.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-oceanica-CCMP1005.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiosira-rotula-CCMP3096.pep --tblout CENP-X-hmmscan-Thalassiosira-rotula-CCMP3096.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-CCMP3096.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiosira-rotula-GSO102.pep --tblout CENP-X-hmmscan-Thalassiosira-rotula-GSO102.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-rotula-GSO102.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep --tblout CENP-X-hmmscan-Thalassiosira-weissflogii-CCMP1010.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1010.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep --tblout CENP-X-hmmscan-Thalassiosira-weissflogii-CCMP1336.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiosira-weissflogii-CCMP1336.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thalassiothrix-antarctica-L6_D1.pep --tblout CENP-X-hmmscan-Thalassiothrix-antarctica-L6_D1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thalassiothrix-antarctica-L6_D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep --tblout CENP-X-hmmscan-Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thoracosphaera-heimii-CCCM-670-CCMP-1069.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Thraustochytrium-sp-LLF1b.pep --tblout CENP-X-hmmscan-Thraustochytrium-sp-LLF1b.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Thraustochytrium-sp-LLF1b.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Tiarina-fusus-LIS.pep --tblout CENP-X-hmmscan-Tiarina-fusus-LIS.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Tiarina-fusus-LIS.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep --tblout CENP-X-hmmscan-Timspurckia-oligopyrenoides-CCMP3278.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Timspurckia-oligopyrenoides-CCMP3278.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Togula-jolla-CCCM-725.pep --tblout CENP-X-hmmscan-Togula-jolla-CCCM-725.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Togula-jolla-CCCM-725.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Triceratium-dubium-CCMP147.pep --tblout CENP-X-hmmscan-Triceratium-dubium-CCMP147.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Triceratium-dubium-CCMP147.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep --tblout CENP-X-hmmscan-Trichosphaerium-sp-Am-I-7-wt.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Trichosphaerium-sp-Am-I-7-wt.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Undescribed-sp-CCMP2097.pep --tblout CENP-X-hmmscan-Undescribed-sp-CCMP2097.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2097.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Undescribed-sp-CCMP2098.pep --tblout CENP-X-hmmscan-Undescribed-sp-CCMP2098.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2098.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Undescribed-sp-CCMP2293.pep --tblout CENP-X-hmmscan-Undescribed-sp-CCMP2293.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2293.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Undescribed-sp-CCMP2436.pep --tblout CENP-X-hmmscan-Undescribed-sp-CCMP2436.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-CCMP2436.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Undescribed-sp-D1.pep --tblout CENP-X-hmmscan-Undescribed-sp-D1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-D1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep --tblout CENP-X-hmmscan-Undescribed-sp-isolateNY0313808BC1.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-sp-isolateNY0313808BC1.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Undescribed-undescribed-CCMP2298.pep --tblout CENP-X-hmmscan-Undescribed-undescribed-CCMP2298.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Undescribed-undescribed-CCMP2298.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Uronema-sp.-Bbcil.pep --tblout CENP-X-hmmscan-Uronema-sp.-Bbcil.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Uronema-sp.-Bbcil.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep --tblout CENP-X-hmmscan-Vannella-robusta-DIVA3-518-3-11-1-6.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-robusta-DIVA3-518-3-11-1-6.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep --tblout CENP-X-hmmscan-Vannella-sp.-DIVA3-517-6-12.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vannella-sp.-DIVA3-517-6-12.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Vaucheria-litorea-CCMP2940.pep --tblout CENP-X-hmmscan-Vaucheria-litorea-CCMP2940.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vaucheria-litorea-CCMP2940.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep --tblout CENP-X-hmmscan-Vexillifera-sp.-DIVA3-564-2.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vexillifera-sp.-DIVA3-564-2.pep.fa
cd /N/dc2/projects/marinovg/2014-06-19-MMETSP/2015-04-27-histones; module load hmmer/3.0; hmmscan --cpu 16 -o CENP-X-hmmscan-Vitrella-brassicaformis-CCMP3346.pep --tblout CENP-X-hmmscan-Vitrella-brassicaformis-CCMP3346.pep.tblout Pfam-A.CENP-X.hmm /N/dc2/projects/marinovg/2014-06-19-MMETSP/Vitrella-brassicaformis-CCMP3346.pep.fa