FIMO version 4.6.1, (Release date: 8 EST 20)

For further information on how to interpret these results or to get a copy of the FIMO software please access http://meme.nbcr.net

• Each of the following 125 motif occurrences has p-value less than 0.0001
• The p-value of a motif occurrence is defined as the probability of a random sequence of the same length as the motif matching that position of the sequence with as good or better a score.
• The score for the match of a position in a sequence to a motif is computed by summing the appropriate entries from each column of the position-dependent scoring matrix that represents the motif.
• The q-value of a motif occurrence is defined as the false discovery rate if the occurrence is accepted as significant.
• The table is sorted by increasing p-value.
• If the start position is larger than the end position, the motif occurrence is on the reverse strand.

Command line:

/woldlab/castor/data00/proj/genome/programs/meme-4.6.1/bin/fimo -o fimo-K562-CSDA[MSY3]-1G2-A1-Rep5-SL3734.5x.4RPM.shuffled K562-CSDA[MSY3]-1G2-A1-Rep5-SL3734.topmotf K562-CSDA[MSY3]-1G2-A1-Rep5-SL3734.5x-4RPM.learnshift.shufled.fasta

Settings:

output directory = fimo-K562-CSDA[MSY3]-1G2-A1-Rep5-SL3734.5x.4RPM.shuffled
MEME file name = K562-CSDA[MSY3]-1G2-A1-Rep5-SL3734.topmotf
sequence file name = K562-CSDA[MSY3]-1G2-A1-Rep5-SL3734.5x-4RPM.learnshift.shufled.fasta


background file name = (null)
motif name = motif
allow clobber = false


compute q-values = true
output p-threshold set = false
output q-threshold set = false


text only = false
scan both strands = true
max sequence length = 250000000


output q-value threshold =   1
output p-value threshold = 0.0001
pseudocount = 0.1


verbosity = 2

This information can be useful in the event you wish to report a problem with the FIMO software.