### STAR --runMode genomeGenerate --runThreadN 1 --genomeDir /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2020-05-11-Zohar-10X-genomes/gencode_v30-10X/star --genomeFastaFiles /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2020-05-11-Zohar-10X-genomes/gencode_v30-10X/fasta/genome.fa --genomeSAindexNbases 14 --genomeChrBinNbits 18 --genomeSAsparseD 3 --limitGenomeGenerateRAM 17179869184 --sjdbGTFfile /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2020-05-11-Zohar-10X-genomes/gencode_v30-10X/genes/genes.gtf versionGenome 20201 genomeFastaFiles /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2020-05-11-Zohar-10X-genomes/gencode_v30-10X/fasta/genome.fa genomeSAindexNbases 14 genomeChrBinNbits 18 genomeSAsparseD 3 sjdbOverhang 100 sjdbFileChrStartEnd - sjdbGTFfile /oak/stanford/groups/akundaje/marinovg/ENCODE4/ATAC/2020-05-11-Zohar-10X-genomes/gencode_v30-10X/genes/genes.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic