585 413 143 0 14 chr3L 17 88 -24543469 + HETRP_DM Satellite Satellite 1600 1669 -203 2 585 276 185 250 42 chr3L 246 342 -24543215 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 390 546 -24543011 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 704 800 -24542757 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 848 1004 -24542553 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 1162 1258 -24542299 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 1306 1462 -24542095 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 1620 1716 -24541841 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 1764 1920 -24541637 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 2078 2174 -24541383 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 2222 2378 -24541179 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 328 185 261 0 chr3L 2536 2628 -24540929 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 2676 2832 -24540725 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 2990 3086 -24540471 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 3134 3290 -24540267 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 3448 3544 -24540013 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 3592 3748 -24539809 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 3906 4002 -24539555 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 4050 4206 -24539351 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 4364 4460 -24539097 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 4508 4664 -24538893 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 4822 4918 -24538639 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 4966 5122 -24538435 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 5280 5376 -24538181 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 5424 5580 -24537977 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 328 185 261 0 chr3L 5738 5830 -24537727 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 5878 6034 -24537523 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 6192 6288 -24537269 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 6336 6492 -24537065 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 6650 6746 -24536811 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 6794 6950 -24536607 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 7108 7204 -24536353 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 7252 7408 -24536149 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 7566 7662 -24535895 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 7710 7866 -24535691 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 8024 8120 -24535437 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 8168 8324 -24535233 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 8482 8578 -24534979 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 8626 8782 -24534775 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 328 185 261 0 chr3L 8940 9032 -24534525 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 9080 9236 -24534321 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 9394 9490 -24534067 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 9538 9694 -24533863 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 9852 9948 -24533609 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 9996 10152 -24533405 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 10310 10406 -24533151 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 10454 10610 -24532947 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 10768 10864 -24532693 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 10912 11068 -24532489 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 11226 11322 -24532235 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 11370 11526 -24532031 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 11684 11780 -24531777 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 11828 11984 -24531573 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 328 185 261 0 chr3L 12142 12234 -24531323 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 12282 12438 -24531119 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 12596 12692 -24530865 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 12740 12896 -24530661 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 13054 13150 -24530407 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 13198 13354 -24530203 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 13512 13608 -24529949 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 13656 13812 -24529745 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 13970 14066 -24529491 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 14114 14270 -24529287 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 14428 14524 -24529033 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 14572 14728 -24528829 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 14886 14982 -24528575 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 15030 15186 -24528371 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 328 185 261 0 chr3L 15344 15436 -24528121 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 15484 15640 -24527917 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 15798 15894 -24527663 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 15942 16098 -24527459 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 16256 16352 -24527205 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 16400 16556 -24527001 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 16714 16810 -24526747 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 16858 17014 -24526543 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 17172 17268 -24526289 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 17316 17472 -24526085 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 17630 17726 -24525831 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 17774 17930 -24525627 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 18088 18184 -24525373 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 18232 18388 -24525169 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 18546 18642 -24524915 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 775 188 0 19 chr3L 18690 18847 -24524710 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 328 185 261 0 chr3L 19005 19097 -24524460 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 19145 19301 -24524256 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 276 185 250 42 chr3L 19459 19555 -24524002 + HETRP_DM Satellite Satellite 1519 1634 -238 2 585 787 170 6 19 chr3L 19603 19759 -24523798 + HETRP_DM Satellite Satellite 1516 1669 -203 2 585 455 158 8 116 chr3L 19862 19991 -24523566 + HETRP_DM Satellite Satellite 1555 1669 -203 2 585 2119 150 46 45 chr3L 20159 20882 -24522675 - DNAREP1_DM LINE Penelope 0 594 1 2 585 23 68 0 0 chr3L 21090 21134 -24522423 + AT_rich Low_complexity Low_complexity 1 44 0 2 585 27 29 0 0 chr3L 21188 21222 -24522335 + AT_rich Low_complexity Low_complexity 1 34 0 2 585 950 207 85 66 chr3L 21407 21866 -24521691 + DNAREP1_DM LINE Penelope 1 594 0 2 585 4713 2 0 2 chr3L 27653 28201 -24515356 + POGO DNA Pogo 1 547 -1574 2 585 5100 2 2 2 chr3L 28192 28800 -24514757 + POGO DNA Pogo 1514 2121 0 2 585 1819 109 54 11 chr3L 28805 29139 -24514418 + DNAREP1_DM LINE Penelope 4 335 -259 2 585 1057 189 41 8 chr3L 33786 34031 -24509526 + DNAREP1_DM LINE Penelope 2 254 -340 2 585 659 123 114 8 chr3L 34029 34152 -24509405 + DNAREP1_DM LINE Penelope 452 587 -7 2 585 247 203 2 79 chr3L 36040 36144 -24507413 + DNAREP1_DM LINE Penelope 152 336 -258 2 585 31 0 0 0 chr3L 36417 36448 -24507109 + AT_rich Low_complexity Low_complexity 1 31 0 2 585 226 191 0 0 chr3L 37327 37369 -24506188 - DNAREP1_DM LINE Penelope -525 69 28 2 585 270 219 52 52 chr3L 37748 37928 -24505629 + A-rich Low_complexity Low_complexity 1 180 0 2 585 1736 106 147 2 chr3L 38372 38850 -24504707 - DNAREP1_DM LINE Penelope -1 593 6 2 585 1251 107 45 2 chr3L 38876 39244 -24504313 - DNAREP1_DM LINE Penelope -172 422 1 2 585 27 29 0 0 chr3L 40806 40840 -24502717 + AT_rich Low_complexity Low_complexity 1 34 0 2 585 22 88 0 0 chr3L 41291 41348 -24502209 + AT_rich Low_complexity Low_complexity 1 57 0 2 585 372 152 152 0 chr3L 43411 43503 -24500054 + DNAREP1_DM LINE Penelope 36 141 -453 2 585 445 154 167 15 chr3L 43544 43676 -24499881 + DNAREP1_DM LINE Penelope 121 272 -322 2 585 1294 98 204 0 chr3L 45405 45789 -24497768 - DNAREP1_DM LINE Penelope 0 594 1 2 585 28 29 0 0 chr3L 47145 47180 -24496377 + AT_rich Low_complexity Low_complexity 1 35 0 2 585 473 154 110 0 chr3L 48481 48572 -24494985 + DNAREP1_DM LINE Penelope 392 492 -102 2 585 27 0 0 0 chr3L 49560 49587 -24493970 + AT_rich Low_complexity Low_complexity 1 27 0 2 585 26 30 0 0 chr3L 52237 52270 -24491287 + AT_rich Low_complexity Low_complexity 1 33 0 2 585 276 160 0 0 chr3L 52497 52547 -24491010 - DNAREP1_DM LINE Penelope -543 51 2 2 585 21 0 0 0 chr3L 52634 52655 -24490902 + AT_rich Low_complexity Low_complexity 1 21 0 2 585 261 0 0 0 chr3L 53660 53689 -24489868 + (A)n Simple_repeat Simple_repeat 1 29 0 2 585 272 182 0 0 chr3L 55872 55927 -24487630 + DNAREP1_DM LINE Penelope 8 62 -532 2 585 497 100 0 0 chr3L 56038 56108 -24487449 + DNAREP1_DM LINE Penelope 316 385 -209 2 585 840 187 123 167 chr3L 56484 56914 -24486643 + DNAREP1_DM LINE Penelope 178 588 -6 2 585 987 192 143 7 chr3L 59717 59989 -24483568 + DNAREP1_DM LINE Penelope 119 565 -29 2 585 324 23 68 0 chr3L 61763 61807 -24481750 - DNAREP1_DM LINE Penelope -171 423 377 2 585 22 70 0 0 chr3L 62766 62809 -24480748 + AT_rich Low_complexity Low_complexity 1 43 0 2 585 1058 157 246 11 chr3L 64622 64899 -24478658 - DNAREP1_DM LINE Penelope -1 593 252 2 585 247 172 138 0 chr3L 64895 64953 -24478604 - DNAREP1_DM LINE Penelope -528 66 1 2 585 28 0 0 0 chr3L 65018 65046 -24478511 + AT_rich Low_complexity Low_complexity 1 28 0 2 585 26 64 0 0 chr3L 65476 65523 -24478034 + AT_rich Low_complexity Low_complexity 1 47 0 2 585 580 183 104 46 chr3L 65575 65844 -24477713 + DNAREP1_DM LINE Penelope 90 315 -279 2 585 393 113 113 0 chr3L 65859 65930 -24477627 + DNAREP1_DM LINE Penelope 486 564 -30 2 585 22 0 0 0 chr3L 72623 72645 -24470912 + AT_rich Low_complexity Low_complexity 1 22 0 2 585 275 72 0 23 chr3L 73334 73377 -24470180 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2 585 189 109 55 0 chr3L 75985 76040 -24467517 + (TTTAA)n Simple_repeat Simple_repeat 5 62 0 2 585 216 67 0 0 chr3L 76383 76413 -24467144 + (T)n Simple_repeat Simple_repeat 1 30 0 2 585 22 0 0 0 chr3L 77990 78012 -24465545 + AT_rich Low_complexity Low_complexity 1 22 0 2 585 27 49 0 0 chr3L 78036 78077 -24465480 + AT_rich Low_complexity Low_complexity 1 41 0 2 585 1167 223 91 14 chr3L 78118 78468 -24465089 + DNAREP1_DM LINE Penelope 209 585 -9 2 585 21 36 0 0 chr3L 78636 78664 -24464893 + AT_rich Low_complexity Low_complexity 1 28 0 2 585 27 0 0 0 chr3L 80732 80759 -24462798 + AT_rich Low_complexity Low_complexity 1 27 0 2 585 23 33 0 0 chr3L 80831 80861 -24462696 + AT_rich Low_complexity Low_complexity 1 30 0 2 585 30 0 0 0 chr3L 82797 82827 -24460730 + AT_rich Low_complexity Low_complexity 1 30 0 2 585 229 36 0 0 chr3L 82932 82960 -24460597 - DNAREP1_DM LINE Penelope 0 594 567 2 585 845 132 266 32 chr3L 84578 84766 -24458791 - DNAREP1_DM LINE Penelope -38 556 325 2 585 23 33 0 0 chr3L 85015 85045 -24458512 + AT_rich Low_complexity Low_complexity 1 30 0 2 585 394 197 243 57 chr3L 85957 86097 -24457460 + DNAREP1_DM LINE Penelope 415 580 -14 2 585 1455 146 96 9 chr3L 91045 91479 -24452078 + DNAREP1_DM LINE Penelope 1 594 0 2 585 986 75 56 6 chr3L 91651 91811 -24451746 - DNAREP1_DM LINE Penelope -330 264 97 2 585 313 203 31 0 chr3L 92335 92399 -24451158 + DNAREP1_DM LINE Penelope 19 84 -510 2 585 492 118 0 0 chr3L 92426 92502 -24451055 + DNAREP1_DM LINE Penelope 519 594 0 2 585 239 189 147 13 chr3L 94735 94810 -24448747 + BS3_DM LINE Jockey 1701 1785 -5 2 585 38 39 0 0 chr3L 95345 95397 -24448160 + AT_rich Low_complexity Low_complexity 1 52 0 2 585 28 86 0 0 chr3L 96080 96150 -24447407 + AT_rich Low_complexity Low_complexity 1 70 0 2 585 35 95 0 0 chr3L 98768 98873 -24444684 + AT_rich Low_complexity Low_complexity 1 105 0 2 585 384 221 61 17 chr3L 98886 99001 -24444556 + DNAREP1_DM LINE Penelope 4 123 -471 2 585 1093 131 309 20 chr3L 100160 100567 -24442990 + DNAREP1_DM LINE Penelope 1 490 -104 2 585 21 0 0 0 chr3L 101161 101182 -24442375 + AT_rich Low_complexity Low_complexity 1 21 0 2 585 21 0 0 0 chr3L 101715 101736 -24441821 + AT_rich Low_complexity Low_complexity 1 21 0 2 585 21 0 0 0 chr3L 102473 102494 -24441063 + AT_rich Low_complexity Low_complexity 1 21 0 2 585 21 0 0 0 chr3L 103232 103253 -24440304 + AT_rich Low_complexity Low_complexity 1 21 0 2 585 234 267 22 22 chr3L 103424 103516 -24440041 + (TATG)n Simple_repeat Simple_repeat 2 93 0 2 585 25 0 0 0 chr3L 103804 103829 -24439728 + AT_rich Low_complexity Low_complexity 1 25 0 2 585 32 0 0 0 chr3L 103921 103953 -24439604 + AT_rich Low_complexity Low_complexity 1 32 0 2 585 21 36 0 0 chr3L 104034 104062 -24439495 + AT_rich Low_complexity Low_complexity 1 28 0 2 585 23 0 0 0 chr3L 107529 107552 -24436005 + AT_rich Low_complexity Low_complexity 1 23 0 2 585 29 0 0 0 chr3L 110111 110140 -24433417 + AT_rich Low_complexity Low_complexity 1 29 0 2 585 3931 0 0 0 chr3L 110266 110694 -24432863 - ROO_LTR LTR Pao 0 428 1 2 585 69915 2 2 2 chr3L 110694 118947 -24424610 - ROO_I LTR Pao 0 8256 1 2 585 3766 0 0 0 chr3L 118947 119375 -24424182 - ROO_LTR LTR Pao 0 428 1 2 585 225 0 0 0 chr3L 120756 120781 -24422776 + (T)n Simple_repeat Simple_repeat 1 25 0 2 585 22 35 0 0 chr3L 125093 125122 -24418435 + AT_rich Low_complexity Low_complexity 1 29 0 2 585 26 64 0 0 chr3L 125933 125980 -24417577 + AT_rich Low_complexity Low_complexity 1 47 0 2 585 24 53 0 0 chr3L 127912 127950 -24415607 + AT_rich Low_complexity Low_complexity 1 38 0 2 585 180 77 0 0 chr3L 128832 128858 -24414699 + (TATG)n Simple_repeat Simple_repeat 3 28 0 2 585 21 0 0 0 chr3L 128923 128944 -24414613 + AT_rich Low_complexity Low_complexity 1 21 0 2 585 26 93 0 0 chr3L 129192 129267 -24414290 + AT_rich Low_complexity Low_complexity 1 75 0 2 585 21 57 0 0 chr3L 130064 130099 -24413458 + AT_rich Low_complexity Low_complexity 1 35 0 2 586 327 25 0 0 chr3L 131426 131466 -24412091 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 586 30 27 0 0 chr3L 135392 135429 -24408128 + AT_rich Low_complexity Low_complexity 1 37 0 2 586 322 159 0 33 chr3L 136129 136220 -24407337 + ROO_I LTR Pao 637 724 -7532 2 586 21 0 0 0 chr3L 139012 139033 -24404524 + AT_rich Low_complexity Low_complexity 1 21 0 2 586 215 191 0 16 chr3L 140966 141030 -24402527 + CT-rich Low_complexity Low_complexity 2 64 0 2 586 30 0 0 0 chr3L 144077 144107 -24399450 + AT_rich Low_complexity Low_complexity 1 30 0 2 586 24 0 0 0 chr3L 144636 144660 -24398897 + AT_rich Low_complexity Low_complexity 1 24 0 2 586 26 50 0 0 chr3L 145186 145226 -24398331 + AT_rich Low_complexity Low_complexity 1 40 0 2 586 24 53 0 0 chr3L 145890 145928 -24397629 + AT_rich Low_complexity Low_complexity 1 38 0 2 586 268 180 0 63 chr3L 145978 146073 -24397484 + T-rich Low_complexity Low_complexity 5 93 0 2 586 21 0 0 0 chr3L 149217 149238 -24394319 + AT_rich Low_complexity Low_complexity 1 21 0 2 586 21 57 0 0 chr3L 152606 152641 -24390916 + AT_rich Low_complexity Low_complexity 1 35 0 2 586 25 0 0 0 chr3L 154638 154663 -24388894 + AT_rich Low_complexity Low_complexity 1 25 0 2 586 24 67 0 0 chr3L 158472 158517 -24385040 + AT_rich Low_complexity Low_complexity 1 45 0 2 586 35 24 0 0 chr3L 163969 164011 -24379546 + AT_rich Low_complexity Low_complexity 1 42 0 2 586 745 85 119 0 chr3L 164035 164153 -24379404 - DNAREP1_DM LINE Penelope -3 591 460 2 586 195 42 0 0 chr3L 178635 178659 -24364898 + (TCG)n Simple_repeat Simple_repeat 3 26 0 2 586 28 48 0 0 chr3L 187977 188019 -24355538 + AT_rich Low_complexity Low_complexity 1 42 0 2 586 25 31 0 0 chr3L 205957 205989 -24337568 + AT_rich Low_complexity Low_complexity 1 32 0 2 586 381 176 0 0 chr3L 207732 207806 -24335751 + (TA)n Simple_repeat Simple_repeat 1 74 0 2 586 34 0 0 0 chr3L 211526 211560 -24331997 + AT_rich Low_complexity Low_complexity 1 34 0 2 586 23 33 0 0 chr3L 220896 220926 -24322631 + AT_rich Low_complexity Low_complexity 1 30 0 2 586 302 216 2 110 chr3L 223448 223589 -24319968 - DNAREP1_DM LINE Penelope -259 335 117 2 586 262 236 0 0 chr3L 223634 223689 -24319868 - DNAREP1_DM LINE Penelope -538 56 2 2 586 254 337 0 0 chr3L 224628 224720 -24318837 + (CAA)n Simple_repeat Simple_repeat 2 93 0 2 586 24 0 0 0 chr3L 231696 231720 -24311837 + AT_rich Low_complexity Low_complexity 1 24 0 2 586 21 0 0 0 chr3L 231921 231942 -24311615 + AT_rich Low_complexity Low_complexity 1 21 0 2 586 27 73 0 0 chr3L 234134 234189 -24309368 + AT_rich Low_complexity Low_complexity 1 55 0 2 586 23 0 0 0 chr3L 234912 234935 -24308622 + AT_rich Low_complexity Low_complexity 1 23 0 2 586 23 0 0 0 chr3L 234941 234964 -24308593 + AT_rich Low_complexity Low_complexity 1 23 0 2 586 23 0 0 0 chr3L 236511 236534 -24307023 + AT_rich Low_complexity Low_complexity 1 23 0 2 586 25 51 0 0 chr3L 238575 238614 -24304943 + AT_rich Low_complexity Low_complexity 1 39 0 2 586 42 57 0 0 chr3L 247355 247425 -24296132 + AT_rich Low_complexity Low_complexity 1 70 0 2 586 22 70 0 0 chr3L 247640 247683 -24295874 + AT_rich Low_complexity Low_complexity 1 43 0 2 586 27 29 0 0 chr3L 250018 250052 -24293505 + AT_rich Low_complexity Low_complexity 1 34 0 2 586 24 53 0 0 chr3L 250241 250279 -24293278 + AT_rich Low_complexity Low_complexity 1 38 0 2 586 24 0 0 0 chr3L 254647 254671 -24288886 + AT_rich Low_complexity Low_complexity 1 24 0 2 586 21 0 0 0 chr3L 255914 255935 -24287622 + AT_rich Low_complexity Low_complexity 1 21 0 2 586 21 0 0 0 chr3L 259015 259036 -24284521 + AT_rich Low_complexity Low_complexity 1 21 0 2 587 24 53 0 0 chr3L 264542 264580 -24278977 + AT_rich Low_complexity Low_complexity 1 38 0 2 587 26 0 0 0 chr3L 273503 273529 -24270028 + AT_rich Low_complexity Low_complexity 1 26 0 2 587 258 105 0 0 chr3L 286864 286902 -24256655 + (CAG)n Simple_repeat Simple_repeat 3 40 0 2 587 195 100 0 0 chr3L 292836 292866 -24250691 + (CAAAC)n Simple_repeat Simple_repeat 4 33 0 2 587 258 248 23 11 chr3L 295153 295241 -24248316 - DNAREP1_DM LINE Penelope -105 489 446 2 587 247 173 173 0 chr3L 295289 295341 -24248216 - DNAREP1_DM LINE Penelope -532 62 2 2 587 195 42 0 0 chr3L 295355 295379 -24248178 + (CATCC)n Simple_repeat Simple_repeat 1 24 0 2 587 229 254 0 0 chr3L 296447 296502 -24247055 + DNAREP1_DM LINE Penelope 1 55 -539 2 587 26 30 0 0 chr3L 297560 297593 -24245964 + AT_rich Low_complexity Low_complexity 1 33 0 2 587 22 0 0 0 chr3L 305260 305282 -24238275 + AT_rich Low_complexity Low_complexity 1 22 0 2 587 215 323 0 0 chr3L 310318 310380 -24233177 + (CTG)n Simple_repeat Simple_repeat 1 62 0 2 587 22 0 0 0 chr3L 316790 316812 -24226745 + AT_rich Low_complexity Low_complexity 1 22 0 2 587 34 0 0 0 chr3L 317753 317787 -24225770 + AT_rich Low_complexity Low_complexity 1 34 0 2 587 22 0 0 0 chr3L 317927 317949 -24225608 + AT_rich Low_complexity Low_complexity 1 22 0 2 587 251 98 0 68 chr3L 320022 320066 -24223491 - DNAREP1_DM LINE Penelope -1 593 553 2 587 28 29 0 0 chr3L 328805 328840 -24214717 + AT_rich Low_complexity Low_complexity 1 35 0 2 587 21 57 0 0 chr3L 336708 336743 -24206814 + AT_rich Low_complexity Low_complexity 1 35 0 2 587 209 237 34 0 chr3L 340159 340218 -24203339 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 2 587 36 23 0 0 chr3L 343234 343277 -24200280 + AT_rich Low_complexity Low_complexity 1 43 0 2 587 21 0 0 0 chr3L 346353 346374 -24197183 + AT_rich Low_complexity Low_complexity 1 21 0 2 587 203 283 50 10 chr3L 346391 346491 -24197066 + (CATATA)n Simple_repeat Simple_repeat 2 105 0 2 587 224 229 28 14 chr3L 346398 346469 -24197088 + (TA)n Simple_repeat Simple_repeat 1 72 0 2 587 23 33 0 0 chr3L 346541 346571 -24196986 + AT_rich Low_complexity Low_complexity 1 30 0 2 587 23 33 0 0 chr3L 346637 346667 -24196890 + AT_rich Low_complexity Low_complexity 1 30 0 2 587 466 173 74 37 chr3L 357646 357754 -24185803 - DNAREP1_DM LINE Penelope -482 112 1 2 587 25 0 0 0 chr3L 366476 366501 -24177056 + AT_rich Low_complexity Low_complexity 1 25 0 2 587 237 65 0 0 chr3L 367504 367535 -24176022 + (TGG)n Simple_repeat Simple_repeat 1 31 0 2 587 223 231 0 0 chr3L 370985 371037 -24172520 + (CCG)n Simple_repeat Simple_repeat 3 54 0 2 587 198 0 0 0 chr3L 374978 375000 -24168557 + (TTCTG)n Simple_repeat Simple_repeat 4 25 0 2 587 216 67 0 0 chr3L 378225 378255 -24165302 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 587 23 0 0 0 chr3L 387468 387491 -24156066 + AT_rich Low_complexity Low_complexity 1 23 0 2 587 201 74 0 0 chr3L 388124 388151 -24155406 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 587 225 0 0 0 chr3L 391980 392005 -24151552 + (T)n Simple_repeat Simple_repeat 1 25 0 2 587 245 143 0 35 chr3L 392679 392737 -24150820 + (TTGG)n Simple_repeat Simple_repeat 4 59 0 2 588 213 259 0 0 chr3L 393915 393973 -24149584 + (TCCG)n Simple_repeat Simple_repeat 3 60 0 2 588 22 56 0 0 chr3L 394544 394580 -24148977 + AT_rich Low_complexity Low_complexity 1 36 0 2 588 239 228 0 37 chr3L 402568 402650 -24140907 + ROO_I LTR Pao 651 729 -7527 2 588 3605 5 7 7 chr3L 402739 403153 -24140404 - DM297_LTR LTR Gypsy 0 414 1 2 588 54430 7 0 0 chr3L 403153 409321 -24134236 - DM297_I LTR Gypsy 0 6167 1 2 588 3605 5 7 7 chr3L 409321 409735 -24133822 - DM297_LTR LTR Gypsy 0 414 1 2 588 21 71 0 0 chr3L 410211 410253 -24133304 + AT_rich Low_complexity Low_complexity 1 42 0 2 588 281 283 22 0 chr3L 411684 411776 -24131781 + (TGGG)n Simple_repeat Simple_repeat 2 95 0 2 588 27 0 0 0 chr3L 413442 413469 -24130088 + AT_rich Low_complexity Low_complexity 1 27 0 2 588 28 29 0 0 chr3L 432166 432201 -24111356 + AT_rich Low_complexity Low_complexity 1 35 0 2 588 27 29 0 0 chr3L 441360 441394 -24102163 + AT_rich Low_complexity Low_complexity 1 34 0 2 588 32 0 0 0 chr3L 442649 442681 -24100876 + AT_rich Low_complexity Low_complexity 1 32 0 2 588 280 237 0 0 chr3L 451641 451717 -24091840 - ROO_I LTR Pao -7520 736 661 2 588 255 125 0 0 chr3L 458412 458452 -24085105 + (ACTCG)n Simple_repeat Simple_repeat 2 41 0 2 588 25 0 0 0 chr3L 458967 458992 -24084565 + AT_rich Low_complexity Low_complexity 1 25 0 2 588 22 0 0 0 chr3L 464833 464855 -24078702 + AT_rich Low_complexity Low_complexity 1 22 0 2 588 21 0 0 0 chr3L 464972 464993 -24078564 + AT_rich Low_complexity Low_complexity 1 21 0 2 588 225 0 0 0 chr3L 469980 470005 -24073552 + (TCC)n Simple_repeat Simple_repeat 2 26 0 2 588 241 26 26 26 chr3L 471536 471575 -24071982 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2 588 180 0 0 0 chr3L 474266 474286 -24069271 + (T)n Simple_repeat Simple_repeat 1 20 0 2 588 30 27 0 0 chr3L 476337 476374 -24067183 + AT_rich Low_complexity Low_complexity 1 37 0 2 588 212 217 14 14 chr3L 479800 479870 -24063687 + T-rich Low_complexity Low_complexity 4 73 0 2 588 216 0 0 0 chr3L 480299 480323 -24063234 + (A)n Simple_repeat Simple_repeat 1 24 0 2 588 276 77 0 0 chr3L 484801 484840 -24058717 + (GGATG)n Simple_repeat Simple_repeat 5 43 0 2 588 23 33 0 0 chr3L 485557 485587 -24057970 + AT_rich Low_complexity Low_complexity 1 30 0 2 588 21 57 0 0 chr3L 491013 491048 -24052509 + AT_rich Low_complexity Low_complexity 1 35 0 2 588 245 109 22 0 chr3L 492678 492724 -24050833 + (TC)n Simple_repeat Simple_repeat 2 48 0 2 588 200 179 0 51 chr3L 493570 493629 -24049928 + (CAG)n Simple_repeat Simple_repeat 3 58 0 2 588 24 0 0 0 chr3L 499009 499033 -24044524 + AT_rich Low_complexity Low_complexity 1 24 0 2 588 25 0 0 0 chr3L 507741 507766 -24035791 + AT_rich Low_complexity Low_complexity 1 25 0 2 588 218 204 0 0 chr3L 515875 515924 -24027633 + A-rich Low_complexity Low_complexity 1 49 0 2 588 216 0 0 0 chr3L 519698 519722 -24023835 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 588 23 0 0 0 chr3L 520582 520605 -24022952 + AT_rich Low_complexity Low_complexity 1 23 0 2 589 240 170 0 0 chr3L 527285 527338 -24016219 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 2 589 23 0 0 0 chr3L 527653 527676 -24015881 + AT_rich Low_complexity Low_complexity 1 23 0 2 589 216 138 33 33 chr3L 531431 531491 -24012066 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 2 589 214 29 57 0 chr3L 544207 544242 -23999315 + (TC)n Simple_repeat Simple_repeat 2 38 0 2 589 21 36 0 0 chr3L 544985 545013 -23998544 + AT_rich Low_complexity Low_complexity 1 28 0 2 589 241 208 32 156 chr3L 547940 548094 -23995463 + ROO_I LTR Pao 644 778 -7478 2 589 27 0 0 0 chr3L 549254 549281 -23994276 + AT_rich Low_complexity Low_complexity 1 27 0 2 589 183 100 0 0 chr3L 551122 551152 -23992405 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2 589 21 0 0 0 chr3L 556483 556504 -23987053 + AT_rich Low_complexity Low_complexity 1 21 0 2 589 207 278 0 0 chr3L 565512 565566 -23977991 + (CAA)n Simple_repeat Simple_repeat 1 54 0 2 589 246 62 0 0 chr3L 565892 565924 -23977633 + (TTG)n Simple_repeat Simple_repeat 1 32 0 2 589 181 98 24 24 chr3L 568395 568437 -23975120 + (CATTT)n Simple_repeat Simple_repeat 4 45 0 2 589 231 213 0 16 chr3L 572473 572535 -23971022 + (CAG)n Simple_repeat Simple_repeat 3 63 0 2 589 271 262 12 12 chr3L 572586 572667 -23970890 + ROO_I LTR Pao 657 737 -7519 2 589 238 250 11 11 chr3L 573124 573213 -23970344 + (CAG)n Simple_repeat Simple_repeat 2 90 0 2 589 43 0 0 0 chr3L 574768 574811 -23968746 + AT_rich Low_complexity Low_complexity 1 43 0 2 589 183 80 0 0 chr3L 575207 575232 -23968325 + (CAG)n Simple_repeat Simple_repeat 2 26 0 2 589 28 0 0 0 chr3L 576040 576068 -23967489 + AT_rich Low_complexity Low_complexity 1 28 0 2 589 24 96 0 0 chr3L 577271 577344 -23966213 + AT_rich Low_complexity Low_complexity 1 73 0 2 589 237 65 0 0 chr3L 579450 579481 -23964076 + (CACAC)n Simple_repeat Simple_repeat 3 33 0 2 589 242 186 0 33 chr3L 580265 580326 -23963231 + (CAAAC)n Simple_repeat Simple_repeat 2 60 0 2 589 201 149 29 15 chr3L 581161 581229 -23962328 + A-rich Low_complexity Low_complexity 3 71 0 2 589 183 129 0 0 chr3L 583015 583046 -23960511 + (CGAAT)n Simple_repeat Simple_repeat 4 34 0 2 589 24 32 0 0 chr3L 592781 592812 -23950745 + AT_rich Low_complexity Low_complexity 1 31 0 2 589 22 0 0 0 chr3L 592884 592906 -23950651 + AT_rich Low_complexity Low_complexity 1 22 0 2 589 292 22 44 0 chr3L 592990 593035 -23950522 + (TAA)n Simple_repeat Simple_repeat 1 47 0 2 589 34 0 0 0 chr3L 603194 603228 -23940329 + AT_rich Low_complexity Low_complexity 1 34 0 2 589 395 253 25 19 chr3L 604608 604769 -23938788 + SAR_DM Satellite Satellite 692 853 -619 2 589 21 0 0 0 chr3L 607290 607311 -23936246 + AT_rich Low_complexity Low_complexity 1 21 0 2 589 198 0 0 0 chr3L 607654 607676 -23935881 + (A)n Simple_repeat Simple_repeat 1 22 0 2 589 25 0 0 0 chr3L 607975 608000 -23935557 + AT_rich Low_complexity Low_complexity 1 25 0 2 589 324 48 0 0 chr3L 608285 608327 -23935230 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2 589 22 0 0 0 chr3L 608617 608639 -23934918 + AT_rich Low_complexity Low_complexity 1 22 0 2 589 23 68 0 0 chr3L 612024 612068 -23931489 + AT_rich Low_complexity Low_complexity 1 44 0 2 589 259 308 0 0 chr3L 614903 614981 -23928576 + (TCTG)n Simple_repeat Simple_repeat 1 78 0 2 589 249 245 0 0 chr3L 615102 615151 -23928406 + (CTG)n Simple_repeat Simple_repeat 2 50 0 2 589 183 42 0 0 chr3L 616504 616528 -23927029 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2 589 254 29 0 28 chr3L 617004 617040 -23926517 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2 589 22 35 0 0 chr3L 617321 617350 -23926207 + AT_rich Low_complexity Low_complexity 1 29 0 2 589 219 153 14 78 chr3L 618990 619132 -23924425 + (CAA)n Simple_repeat Simple_repeat 2 134 0 2 589 234 62 0 0 chr3L 619761 619793 -23923764 + (CCA)n Simple_repeat Simple_repeat 2 33 0 2 589 23 0 0 0 chr3L 621080 621103 -23922454 + GC_rich Low_complexity Low_complexity 1 23 0 2 589 203 250 0 0 chr3L 621903 621955 -23921602 + (TCG)n Simple_repeat Simple_repeat 1 52 0 2 589 330 98 0 0 chr3L 622961 623012 -23920545 + (ATTCG)n Simple_repeat Simple_repeat 1 51 0 2 589 245 231 0 0 chr3L 623489 623541 -23920016 + (CCG)n Simple_repeat Simple_repeat 1 52 0 2 589 180 0 0 0 chr3L 623901 623921 -23919636 + (TATAG)n Simple_repeat Simple_repeat 4 23 0 2 589 23 54 0 0 chr3L 628909 628946 -23914611 + AT_rich Low_complexity Low_complexity 1 37 0 2 589 203 161 0 0 chr3L 628961 628992 -23914565 + (CATA)n Simple_repeat Simple_repeat 2 32 0 2 589 217 174 22 0 chr3L 629595 629641 -23913916 + (TTG)n Simple_repeat Simple_repeat 1 47 0 2 589 234 299 0 13 chr3L 633292 633370 -23910187 + (TG)n Simple_repeat Simple_repeat 2 78 0 2 589 195 42 0 0 chr3L 633494 633518 -23910039 + (CAG)n Simple_repeat Simple_repeat 3 26 0 2 589 189 147 0 0 chr3L 635417 635451 -23908106 + (CGG)n Simple_repeat Simple_repeat 2 35 0 2 589 204 143 0 0 chr3L 637545 637587 -23905970 + (TTCGG)n Simple_repeat Simple_repeat 1 42 0 2 589 213 39 0 0 chr3L 639060 639086 -23904471 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 589 252 227 27 0 chr3L 639094 639169 -23904388 + A-rich Low_complexity Low_complexity 2 78 0 2 589 180 125 0 0 chr3L 639532 639564 -23903993 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 589 208 259 0 0 chr3L 641840 641894 -23901663 + A-rich Low_complexity Low_complexity 1 54 0 2 589 333 0 0 0 chr3L 643104 643141 -23900416 + (ACCG)n Simple_repeat Simple_repeat 3 39 0 2 589 21 0 0 0 chr3L 645096 645117 -23898440 + AT_rich Low_complexity Low_complexity 1 21 0 2 589 240 188 0 0 chr3L 646025 646089 -23897468 + (TTG)n Simple_repeat Simple_repeat 1 64 0 2 589 210 118 0 0 chr3L 647146 647180 -23896377 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 589 186 118 0 0 chr3L 653731 653765 -23889792 + (CTG)n Simple_repeat Simple_repeat 3 36 0 2 590 28 0 0 0 chr3L 655918 655946 -23887611 + AT_rich Low_complexity Low_complexity 1 28 0 2 590 21 0 0 0 chr3L 658487 658508 -23885049 + AT_rich Low_complexity Low_complexity 1 21 0 2 590 239 196 39 0 chr3L 658595 658646 -23884911 + (CCCCAA)n Simple_repeat Simple_repeat 1 53 0 2 590 22 0 0 0 chr3L 658806 658828 -23884729 + AT_rich Low_complexity Low_complexity 1 22 0 2 590 192 125 0 0 chr3L 659107 659139 -23884418 + (GGATG)n Simple_repeat Simple_repeat 4 35 0 2 590 233 224 0 15 chr3L 660180 660248 -23883309 + ROO_I LTR Pao 662 728 -7528 2 590 226 167 0 53 chr3L 661077 661153 -23882404 + (CTG)n Simple_repeat Simple_repeat 1 72 0 2 590 264 111 0 0 chr3L 662272 662317 -23881240 + (CAG)n Simple_repeat Simple_repeat 3 47 0 2 590 180 152 0 0 chr3L 663349 663382 -23880175 + (CAG)n Simple_repeat Simple_repeat 3 35 0 2 590 192 77 0 0 chr3L 663764 663790 -23879767 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2 590 206 333 0 0 chr3L 664767 664827 -23878730 + (CTG)n Simple_repeat Simple_repeat 2 61 0 2 590 180 152 0 0 chr3L 667511 667544 -23876013 + (CCCGA)n Simple_repeat Simple_repeat 3 35 0 2 590 253 267 17 0 chr3L 668724 668784 -23874773 + (CCCCAA)n Simple_repeat Simple_repeat 3 63 0 2 590 228 35 0 0 chr3L 669514 669543 -23874014 + (CAG)n Simple_repeat Simple_repeat 1 29 0 2 590 222 62 0 0 chr3L 671481 671513 -23872044 + (CGAAA)n Simple_repeat Simple_repeat 2 33 0 2 590 219 273 0 0 chr3L 672950 673005 -23870552 + (TTCGGG)n Simple_repeat Simple_repeat 2 56 0 2 590 26 30 0 0 chr3L 675043 675076 -23868481 + AT_rich Low_complexity Low_complexity 1 33 0 2 590 21 0 0 0 chr3L 675216 675237 -23868320 + AT_rich Low_complexity Low_complexity 1 21 0 2 590 22 0 0 0 chr3L 693114 693136 -23850421 + AT_rich Low_complexity Low_complexity 1 22 0 2 590 243 232 0 0 chr3L 693933 693989 -23849568 + (CTG)n Simple_repeat Simple_repeat 2 57 0 2 590 183 80 0 0 chr3L 694120 694145 -23849412 + (CTG)n Simple_repeat Simple_repeat 2 26 0 2 590 21 57 0 0 chr3L 696907 696942 -23846615 + AT_rich Low_complexity Low_complexity 1 35 0 2 590 291 232 0 35 chr3L 699808 699893 -23843664 + (CCCGAA)n Simple_repeat Simple_repeat 1 82 0 2 590 21 82 0 0 chr3L 701597 701646 -23841911 + AT_rich Low_complexity Low_complexity 1 49 0 2 590 23 0 0 0 chr3L 702918 702941 -23840616 + AT_rich Low_complexity Low_complexity 1 23 0 2 590 231 125 0 0 chr3L 703272 703312 -23840245 + (CAT)n Simple_repeat Simple_repeat 1 40 0 2 590 220 191 0 0 chr3L 706473 706515 -23837042 + (CAT)n Simple_repeat Simple_repeat 2 43 0 2 590 38 51 0 0 chr3L 710809 710868 -23832689 + AT_rich Low_complexity Low_complexity 1 59 0 2 590 23 33 0 0 chr3L 714726 714756 -23828801 + AT_rich Low_complexity Low_complexity 1 30 0 2 590 30 0 0 0 chr3L 717122 717152 -23826405 + AT_rich Low_complexity Low_complexity 1 30 0 2 590 257 219 46 15 chr3L 717371 717436 -23826121 + (CCCGAA)n Simple_repeat Simple_repeat 6 72 0 2 590 209 150 0 48 chr3L 719339 719381 -23824176 + (CAG)n Simple_repeat Simple_repeat 3 42 0 2 590 211 224 0 0 chr3L 722734 722783 -23820774 + A-rich Low_complexity Low_complexity 1 49 0 2 590 21 0 0 0 chr3L 723212 723233 -23820324 + AT_rich Low_complexity Low_complexity 1 21 0 2 590 204 97 0 0 chr3L 723758 723789 -23819768 + (TC)n Simple_repeat Simple_repeat 1 31 0 2 590 21 0 0 0 chr3L 724690 724711 -23818846 + AT_rich Low_complexity Low_complexity 1 21 0 2 590 24 32 0 0 chr3L 731677 731708 -23811849 + AT_rich Low_complexity Low_complexity 1 31 0 2 590 183 42 0 0 chr3L 732193 732217 -23811340 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2 590 180 0 0 0 chr3L 732600 732620 -23810937 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 590 225 0 0 0 chr3L 732718 732743 -23810814 + (A)n Simple_repeat Simple_repeat 1 25 0 2 590 200 135 27 0 chr3L 733568 733605 -23809952 + (CAT)n Simple_repeat Simple_repeat 2 39 0 2 590 290 212 0 0 chr3L 737943 738023 -23805534 - ROO_I LTR Pao -7534 722 643 2 590 211 233 0 0 chr3L 739573 739616 -23803941 + (TTG)n Simple_repeat Simple_repeat 2 44 0 2 590 25 0 0 0 chr3L 744881 744906 -23798651 + AT_rich Low_complexity Low_complexity 1 25 0 2 590 22 56 0 0 chr3L 746981 747017 -23796540 + AT_rich Low_complexity Low_complexity 1 36 0 2 590 311 178 0 27 chr3L 750142 750217 -23793340 + ROO_I LTR Pao 652 724 -7532 2 590 201 167 0 0 chr3L 750635 750671 -23792886 + T-rich Low_complexity Low_complexity 1 36 0 2 590 192 163 0 0 chr3L 750974 751017 -23792540 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 590 22 0 0 0 chr3L 752824 752846 -23790711 + AT_rich Low_complexity Low_complexity 1 22 0 2 590 21 0 0 0 chr3L 753228 753249 -23790308 + AT_rich Low_complexity Low_complexity 1 21 0 2 590 182 37 0 36 chr3L 756057 756085 -23787472 + (TTG)n Simple_repeat Simple_repeat 3 29 0 2 590 231 200 0 0 chr3L 757003 757053 -23786504 - DOC3_DM LINE Jockey -4179 561 512 2 590 189 0 0 0 chr3L 757295 757316 -23786241 + (CAG)n Simple_repeat Simple_repeat 3 23 0 2 590 207 69 0 0 chr3L 760156 760185 -23783372 + (CAGTC)n Simple_repeat Simple_repeat 4 32 0 2 590 195 42 0 0 chr3L 764988 765012 -23778545 + (GTATG)n Simple_repeat Simple_repeat 2 25 0 2 590 28 29 0 0 chr3L 766547 766582 -23776975 + AT_rich Low_complexity Low_complexity 1 35 0 2 590 27 0 0 0 chr3L 768098 768125 -23775432 + AT_rich Low_complexity Low_complexity 1 27 0 2 590 22 0 0 0 chr3L 769969 769991 -23773566 + AT_rich Low_complexity Low_complexity 1 22 0 2 590 24 0 0 0 chr3L 770030 770054 -23773503 + AT_rich Low_complexity Low_complexity 1 24 0 2 590 203 284 0 15 chr3L 773632 773700 -23769857 + (CAA)n Simple_repeat Simple_repeat 2 68 0 2 590 210 222 0 36 chr3L 774615 774671 -23768886 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 2 590 218 182 0 0 chr3L 777310 777354 -23766203 + (CAGT)n Simple_repeat Simple_repeat 3 46 0 2 590 256 130 74 0 chr3L 779533 779587 -23763970 - ROO_I LTR Pao -7512 744 687 2 590 21 0 0 0 chr3L 784003 784024 -23759533 + AT_rich Low_complexity Low_complexity 1 21 0 2 591 180 77 0 0 chr3L 786888 786914 -23756643 + (TCCG)n Simple_repeat Simple_repeat 1 26 0 2 591 29 28 0 0 chr3L 788377 788413 -23755144 + AT_rich Low_complexity Low_complexity 1 36 0 2 591 21 0 0 0 chr3L 789915 789936 -23753621 + AT_rich Low_complexity Low_complexity 1 21 0 2 591 4017 0 0 0 chr3L 789968 790396 -23753161 + ROO_LTR LTR Pao 1 428 0 2 591 216 216 0 19 chr3L 791037 791089 -23752468 + T-rich Low_complexity Low_complexity 2 52 0 2 591 236 264 0 40 chr3L 791273 791348 -23752209 + (TCG)n Simple_repeat Simple_repeat 2 73 0 2 591 327 105 0 0 chr3L 791760 791817 -23751740 + (CAGT)n Simple_repeat Simple_repeat 4 60 0 2 591 24 53 0 0 chr3L 793359 793397 -23750160 + AT_rich Low_complexity Low_complexity 1 38 0 2 591 22 0 0 0 chr3L 794620 794642 -23748915 + AT_rich Low_complexity Low_complexity 1 22 0 2 591 23 33 0 0 chr3L 794685 794715 -23748842 + AT_rich Low_complexity Low_complexity 1 30 0 2 591 25 31 0 0 chr3L 797130 797162 -23746395 + AT_rich Low_complexity Low_complexity 1 32 0 2 591 203 189 0 0 chr3L 801824 801861 -23741696 + A-rich Low_complexity Low_complexity 1 37 0 2 591 188 157 0 38 chr3L 807240 807293 -23736264 + (CAG)n Simple_repeat Simple_repeat 1 51 0 2 591 207 0 0 0 chr3L 812743 812766 -23730791 + (CAAA)n Simple_repeat Simple_repeat 4 26 0 2 591 25 51 0 0 chr3L 815455 815494 -23728063 + AT_rich Low_complexity Low_complexity 1 39 0 2 591 21 82 0 0 chr3L 816380 816429 -23727128 + AT_rich Low_complexity Low_complexity 1 49 0 2 591 21 0 0 0 chr3L 816580 816601 -23726956 + AT_rich Low_complexity Low_complexity 1 21 0 2 591 21 0 0 0 chr3L 817395 817416 -23726141 + AT_rich Low_complexity Low_complexity 1 21 0 2 591 21 57 0 0 chr3L 820450 820485 -23723072 + AT_rich Low_complexity Low_complexity 1 35 0 2 591 267 190 0 0 chr3L 822234 822292 -23721265 + (TGAG)n Simple_repeat Simple_repeat 2 59 0 2 591 234 193 0 0 chr3L 824839 824896 -23718661 + (ATG)n Simple_repeat Simple_repeat 3 59 0 2 591 21 0 0 0 chr3L 825514 825535 -23718022 + AT_rich Low_complexity Low_complexity 1 21 0 2 591 24 0 0 0 chr3L 833482 833506 -23710051 + AT_rich Low_complexity Low_complexity 1 24 0 2 591 198 0 0 0 chr3L 836735 836757 -23706800 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2 591 22 0 0 0 chr3L 841409 841431 -23702126 + AT_rich Low_complexity Low_complexity 1 22 0 2 591 29 28 0 0 chr3L 852642 852678 -23690879 + AT_rich Low_complexity Low_complexity 1 36 0 2 591 22 35 0 0 chr3L 854436 854465 -23689092 + AT_rich Low_complexity Low_complexity 1 29 0 2 591 3801 5 0 0 chr3L 858053 858470 -23685087 - TIRANT_LTR LTR Gypsy 0 417 1 2 591 67956 2 0 1 chr3L 858470 866060 -23677497 - TIRANT_I LTR Gypsy 0 7692 1 2 591 3801 5 0 0 chr3L 866060 866477 -23677080 - TIRANT_LTR LTR Gypsy 0 417 1 2 591 264 200 0 0 chr3L 869143 869203 -23674354 + (CCA)n Simple_repeat Simple_repeat 3 62 0 2 591 186 71 0 0 chr3L 869278 869306 -23674251 + (GGA)n Simple_repeat Simple_repeat 1 28 0 2 591 252 0 0 0 chr3L 870750 870778 -23672779 + (TA)n Simple_repeat Simple_repeat 1 28 0 2 591 224 186 17 0 chr3L 872413 872472 -23671085 + (TG)n Simple_repeat Simple_repeat 2 61 0 2 591 22 0 0 0 chr3L 873157 873179 -23670378 + AT_rich Low_complexity Low_complexity 1 22 0 2 591 218 184 0 0 chr3L 873544 873582 -23669975 + (CAA)n Simple_repeat Simple_repeat 1 38 0 2 591 204 40 0 0 chr3L 878241 878266 -23665291 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 591 217 213 0 0 chr3L 880718 880765 -23662792 + (TCG)n Simple_repeat Simple_repeat 2 48 0 2 591 207 62 39 59 chr3L 882559 882610 -23660947 + T-rich Low_complexity Low_complexity 1 50 0 2 591 235 267 0 65 chr3L 888335 888427 -23655130 + TART_B1 LINE telomeric 111 196 -10458 2 591 312 165 0 121 chr3L 888380 888504 -23655053 + ROO_I LTR Pao 636 744 -7512 2 591 237 277 12 12 chr3L 888562 888646 -23654911 + (CAG)n Simple_repeat Simple_repeat 1 84 0 2 591 207 114 0 0 chr3L 888693 888728 -23654829 + (CAG)n Simple_repeat Simple_repeat 3 37 0 2 591 232 227 13 13 chr3L 889036 889112 -23654445 + ROO_I LTR Pao 647 722 -7534 2 591 207 306 0 0 chr3L 889201 889263 -23654294 + (CAG)n Simple_repeat Simple_repeat 3 64 0 2 591 273 206 30 20 chr3L 889314 889413 -23654144 + (CAG)n Simple_repeat Simple_repeat 1 100 0 2 591 256 33 0 0 chr3L 893058 893088 -23650469 - POGO DNA Pogo -1156 965 936 2 591 208 184 20 0 chr3L 893942 893991 -23649566 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 591 27 0 0 0 chr3L 894402 894429 -23649128 + AT_rich Low_complexity Low_complexity 1 27 0 2 591 23 0 0 0 chr3L 905208 905231 -23638326 + AT_rich Low_complexity Low_complexity 1 23 0 2 591 23 33 0 0 chr3L 906105 906135 -23637422 + AT_rich Low_complexity Low_complexity 1 30 0 2 591 200 218 18 0 chr3L 908854 908909 -23634648 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 591 242 184 0 13 chr3L 915004 915081 -23628476 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 591 218 160 0 20 chr3L 915644 915695 -23627862 + (CTAAA)n Simple_repeat Simple_repeat 1 50 0 2 591 198 71 0 0 chr3L 916900 916928 -23626629 + (TG)n Simple_repeat Simple_repeat 2 29 0 2 592 258 250 0 0 chr3L 919003 919071 -23624486 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 592 29 0 0 0 chr3L 923299 923328 -23620229 + AT_rich Low_complexity Low_complexity 1 29 0 2 592 423 100 0 0 chr3L 925246 925316 -23618241 + (TAA)n Simple_repeat Simple_repeat 3 72 0 2 592 3119 22 0 0 chr3L 925316 925672 -23617885 + MDG1_LTR LTR Gypsy 87 442 0 2 592 56911 7 19 1 chr3L 925672 932169 -23611388 + MDG1_I LTR Gypsy 1 6799 -98 2 592 423 100 0 0 chr3L 932173 932243 -23611314 + (TAA)n Simple_repeat Simple_repeat 3 72 0 2 592 3119 22 0 0 chr3L 932243 932599 -23610958 + MDG1_LTR LTR Gypsy 87 442 0 2 592 195 227 0 0 chr3L 934325 934391 -23609166 + (ACTG)n Simple_repeat Simple_repeat 1 66 0 2 592 180 0 0 0 chr3L 935170 935190 -23608367 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 592 180 0 0 0 chr3L 935635 935655 -23607902 + (CGA)n Simple_repeat Simple_repeat 2 21 0 2 592 228 200 0 0 chr3L 939319 939379 -23604178 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 592 9764 3 0 1 chr3L 939837 940886 -23602671 - LINEJ1_DM LINE Jockey -13 5007 3960 2 592 22 0 0 0 chr3L 946998 947020 -23596537 + AT_rich Low_complexity Low_complexity 1 22 0 2 592 443 112 12 0 chr3L 951608 951688 -23591869 + (CAGTT)n Simple_repeat Simple_repeat 4 84 0 2 592 228 103 17 33 chr3L 952776 952836 -23590721 + (TCTCTG)n Simple_repeat Simple_repeat 5 63 0 2 592 225 65 0 0 chr3L 953730 953761 -23589796 + (T)n Simple_repeat Simple_repeat 1 31 0 2 592 25 0 0 0 chr3L 955629 955654 -23587903 + AT_rich Low_complexity Low_complexity 1 25 0 2 592 189 74 0 0 chr3L 957404 957431 -23586126 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 592 230 241 0 0 chr3L 964312 964370 -23579187 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 592 189 0 0 0 chr3L 971003 971024 -23572533 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 592 189 107 0 0 chr3L 972965 972993 -23570564 + (CAAT)n Simple_repeat Simple_repeat 4 31 0 2 592 204 167 0 0 chr3L 973046 973094 -23570463 + CT-rich Low_complexity Low_complexity 2 49 0 2 592 276 30 0 0 chr3L 976046 976079 -23567478 + (CAA)n Simple_repeat Simple_repeat 2 34 0 2 592 243 103 0 0 chr3L 976836 976875 -23566682 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 592 210 37 0 0 chr3L 977084 977111 -23566446 + (CAGT)n Simple_repeat Simple_repeat 4 30 0 2 592 25 31 0 0 chr3L 982509 982541 -23561016 + AT_rich Low_complexity Low_complexity 1 32 0 2 592 222 174 0 0 chr3L 986081 986127 -23557430 + (CCCGAA)n Simple_repeat Simple_repeat 6 51 0 2 592 198 0 0 0 chr3L 986691 986713 -23556844 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 592 183 162 0 0 chr3L 988228 988265 -23555292 + (CAAT)n Simple_repeat Simple_repeat 2 38 0 2 592 245 235 0 0 chr3L 988766 988834 -23554723 + (CAG)n Simple_repeat Simple_repeat 2 69 0 2 592 236 318 13 25 chr3L 988913 989071 -23554486 + (CCA)n Simple_repeat Simple_repeat 3 158 0 2 592 204 208 0 0 chr3L 1000656 1000704 -23542853 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 2 592 342 45 0 0 chr3L 1001402 1001446 -23542111 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 592 228 149 0 0 chr3L 1001898 1001945 -23541612 + (CAGAA)n Simple_repeat Simple_repeat 3 49 0 2 592 186 43 0 0 chr3L 1007640 1007663 -23535894 + (TTG)n Simple_repeat Simple_repeat 1 23 0 2 592 188 61 61 0 chr3L 1009023 1009056 -23534501 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 2 592 366 23 0 0 chr3L 1011241 1011284 -23532273 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 592 264 30 0 0 chr3L 1019309 1019342 -23524215 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 592 25 0 0 0 chr3L 1019932 1019957 -23523600 + AT_rich Low_complexity Low_complexity 1 25 0 2 592 189 74 0 0 chr3L 1021891 1021918 -23521639 + (TAAG)n Simple_repeat Simple_repeat 1 27 0 2 592 180 0 0 0 chr3L 1029861 1029881 -23513676 + (T)n Simple_repeat Simple_repeat 1 20 0 2 592 214 180 49 0 chr3L 1034069 1034130 -23509427 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 592 213 184 20 20 chr3L 1034574 1034624 -23508933 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 2 592 26 64 0 0 chr3L 1035067 1035114 -23508443 + AT_rich Low_complexity Low_complexity 1 47 0 2 592 24 53 0 0 chr3L 1037396 1037434 -23506123 + AT_rich Low_complexity Low_complexity 1 38 0 2 592 39 0 0 0 chr3L 1038163 1038202 -23505355 + AT_rich Low_complexity Low_complexity 1 39 0 2 592 259 152 18 45 chr3L 1038715 1038825 -23504732 + (CTG)n Simple_repeat Simple_repeat 1 107 0 2 592 21 57 0 0 chr3L 1039511 1039546 -23504011 + AT_rich Low_complexity Low_complexity 1 35 0 2 592 207 209 0 0 chr3L 1041642 1041685 -23501872 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 592 225 0 0 0 chr3L 1044864 1044889 -23498668 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 592 237 33 0 0 chr3L 1046456 1046486 -23497071 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 592 288 130 0 0 chr3L 1046611 1046657 -23496900 + (TTG)n Simple_repeat Simple_repeat 3 48 0 2 592 27 0 0 0 chr3L 1047288 1047315 -23496242 + AT_rich Low_complexity Low_complexity 1 27 0 2 9 59125 1 1 14 chr3L 1047406 1054568 -23488989 - DM412 LTR Gypsy 0 6897 1 2 593 5017 2 0 59 chr3L 1054554 1055161 -23488396 - DM412 LTR Gypsy 0 571 1 2 593 22 0 0 0 chr3L 1055266 1055288 -23488269 + AT_rich Low_complexity Low_complexity 1 22 0 2 593 218 204 0 0 chr3L 1055728 1055777 -23487780 + (CAA)n Simple_repeat Simple_repeat 2 50 0 2 593 23 0 0 0 chr3L 1055874 1055897 -23487660 + AT_rich Low_complexity Low_complexity 1 23 0 2 593 183 139 0 0 chr3L 1056975 1057011 -23486546 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 593 208 250 0 0 chr3L 1062436 1062488 -23481069 + A-rich Low_complexity Low_complexity 4 55 0 2 593 22 35 0 0 chr3L 1063764 1063793 -23479764 + AT_rich Low_complexity Low_complexity 1 29 0 2 593 21 36 0 0 chr3L 1064518 1064546 -23479011 + AT_rich Low_complexity Low_complexity 1 28 0 2 593 223 202 12 12 chr3L 1064713 1064793 -23478764 + (TTG)n Simple_repeat Simple_repeat 1 80 0 2 593 243 217 43 0 chr3L 1064892 1064961 -23478596 + (TGGG)n Simple_repeat Simple_repeat 2 73 0 2 593 218 122 24 0 chr3L 1068165 1068206 -23475351 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 593 186 167 0 0 chr3L 1068588 1068624 -23474933 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 593 291 28 0 0 chr3L 1069110 1069146 -23474411 + (TTTTC)n Simple_repeat Simple_repeat 1 36 0 2 593 27 29 0 0 chr3L 1070252 1070286 -23473271 + AT_rich Low_complexity Low_complexity 1 34 0 2 593 213 182 0 0 chr3L 1070920 1070975 -23472582 + (TG)n Simple_repeat Simple_repeat 2 56 0 2 593 25 0 0 0 chr3L 1072335 1072360 -23471197 + AT_rich Low_complexity Low_complexity 1 25 0 2 593 195 100 0 0 chr3L 1072371 1072401 -23471156 + (CGAAA)n Simple_repeat Simple_repeat 3 32 0 2 593 208 147 0 0 chr3L 1072573 1072607 -23470950 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 2 593 204 163 23 0 chr3L 1072963 1073006 -23470551 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 593 25 31 0 0 chr3L 1073200 1073232 -23470325 + AT_rich Low_complexity Low_complexity 1 32 0 2 593 25 51 0 0 chr3L 1073678 1073717 -23469840 + AT_rich Low_complexity Low_complexity 1 39 0 2 593 207 114 0 0 chr3L 1075251 1075286 -23468271 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 593 25 0 0 0 chr3L 1075663 1075688 -23467869 + AT_rich Low_complexity Low_complexity 1 25 0 2 593 24 67 0 0 chr3L 1076415 1076460 -23467097 + AT_rich Low_complexity Low_complexity 1 45 0 2 593 225 83 0 0 chr3L 1077020 1077056 -23466501 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 593 29 60 0 0 chr3L 1078493 1078543 -23465014 + AT_rich Low_complexity Low_complexity 1 50 0 2 593 216 67 0 0 chr3L 1080399 1080429 -23463128 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 593 225 196 0 19 chr3L 1080577 1080629 -23462928 + (CA)n Simple_repeat Simple_repeat 2 52 0 2 593 180 0 0 0 chr3L 1082702 1082722 -23460835 + (CCG)n Simple_repeat Simple_repeat 1 20 0 2 593 228 35 0 0 chr3L 1083121 1083150 -23460407 + (CATATA)n Simple_repeat Simple_repeat 4 32 0 2 593 232 70 47 0 chr3L 1083512 1083555 -23460002 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 593 245 250 0 12 chr3L 1083931 1084012 -23459545 + (TCTCTG)n Simple_repeat Simple_repeat 1 80 0 2 593 203 260 41 0 chr3L 1085759 1085832 -23457725 + (TA)n Simple_repeat Simple_repeat 2 77 0 2 593 219 36 0 0 chr3L 1086216 1086244 -23457313 + (T)n Simple_repeat Simple_repeat 1 28 0 2 593 22 0 0 0 chr3L 1088302 1088324 -23455233 + AT_rich Low_complexity Low_complexity 1 22 0 2 593 210 37 0 0 chr3L 1088581 1088608 -23454949 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 593 23 0 0 0 chr3L 1089617 1089640 -23453917 + AT_rich Low_complexity Low_complexity 1 23 0 2 593 22 35 0 0 chr3L 1090180 1090209 -23453348 + AT_rich Low_complexity Low_complexity 1 29 0 2 593 183 232 0 0 chr3L 1090919 1090975 -23452582 + (CAA)n Simple_repeat Simple_repeat 3 58 0 2 593 198 0 0 0 chr3L 1091030 1091052 -23452505 + (TTTTTA)n Simple_repeat Simple_repeat 5 26 0 2 593 198 0 0 0 chr3L 1091062 1091084 -23452473 + (CTCA)n Simple_repeat Simple_repeat 3 24 0 2 593 181 57 57 0 chr3L 1094790 1094825 -23448732 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 593 24 0 0 0 chr3L 1094831 1094855 -23448702 + AT_rich Low_complexity Low_complexity 1 24 0 2 593 21 0 0 0 chr3L 1095001 1095022 -23448535 + AT_rich Low_complexity Low_complexity 1 21 0 2 593 21 57 0 0 chr3L 1095827 1095862 -23447695 + AT_rich Low_complexity Low_complexity 1 35 0 2 593 180 125 0 0 chr3L 1097605 1097637 -23445920 + (CAGA)n Simple_repeat Simple_repeat 2 33 0 2 593 29 78 0 0 chr3L 1098180 1098244 -23445313 + AT_rich Low_complexity Low_complexity 1 64 0 2 593 189 74 0 0 chr3L 1098899 1098926 -23444631 + (TC)n Simple_repeat Simple_repeat 2 28 0 2 593 306 185 0 0 chr3L 1100803 1100884 -23442673 + (TG)n Simple_repeat Simple_repeat 2 82 0 2 593 252 185 0 0 chr3L 1101273 1101327 -23442230 + (CAG)n Simple_repeat Simple_repeat 3 56 0 2 593 38 39 0 0 chr3L 1102108 1102160 -23441397 + AT_rich Low_complexity Low_complexity 1 52 0 2 593 216 67 0 0 chr3L 1104794 1104824 -23438733 + (CGTTG)n Simple_repeat Simple_repeat 5 34 0 2 593 205 88 29 0 chr3L 1108735 1108769 -23434788 + (CA)n Simple_repeat Simple_repeat 1 35 0 2 593 222 246 33 0 chr3L 1108913 1108974 -23434583 + (CA)n Simple_repeat Simple_repeat 2 64 0 2 593 212 143 0 0 chr3L 1112121 1112156 -23431401 + (CTG)n Simple_repeat Simple_repeat 3 37 0 2 593 207 69 0 0 chr3L 1113169 1113198 -23430359 + (CGAAT)n Simple_repeat Simple_repeat 1 29 0 2 593 219 80 0 91 chr3L 1114212 1114267 -23429290 + (CCCA)n Simple_repeat Simple_repeat 2 51 0 2 593 214 278 14 14 chr3L 1116902 1116975 -23426582 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 593 22 56 0 0 chr3L 1118531 1118567 -23424990 + AT_rich Low_complexity Low_complexity 1 36 0 2 593 219 114 0 0 chr3L 1119248 1119283 -23424274 + (CATA)n Simple_repeat Simple_repeat 2 36 0 2 593 27 29 0 0 chr3L 1119800 1119834 -23423723 + AT_rich Low_complexity Low_complexity 1 34 0 2 593 21 0 0 0 chr3L 1121912 1121933 -23421624 + AT_rich Low_complexity Low_complexity 1 21 0 2 593 228 143 0 0 chr3L 1122170 1122212 -23421345 + (CAACT)n Simple_repeat Simple_repeat 5 46 0 2 593 22 0 0 0 chr3L 1122342 1122364 -23421193 + AT_rich Low_complexity Low_complexity 1 22 0 2 593 180 200 0 0 chr3L 1123881 1123926 -23419631 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 593 21 0 0 0 chr3L 1124400 1124421 -23419136 + AT_rich Low_complexity Low_complexity 1 21 0 2 593 245 161 54 0 chr3L 1126595 1126651 -23416906 + (CCGAA)n Simple_repeat Simple_repeat 2 60 0 2 593 26 0 0 0 chr3L 1130342 1130368 -23413189 + AT_rich Low_complexity Low_complexity 1 26 0 2 593 192 179 0 0 chr3L 1132732 1132771 -23410786 + A-rich Low_complexity Low_complexity 2 40 0 2 593 191 85 16 63 chr3L 1134130 1134193 -23409364 + (TTA)n Simple_repeat Simple_repeat 3 62 0 2 593 22 35 0 0 chr3L 1136886 1136915 -23406642 + AT_rich Low_complexity Low_complexity 1 29 0 2 593 216 97 0 0 chr3L 1137998 1138029 -23405528 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 593 269 250 0 0 chr3L 1138187 1138267 -23405290 + (CA)n Simple_repeat Simple_repeat 1 80 0 2 593 180 97 0 0 chr3L 1139013 1139044 -23404513 + (GGAAA)n Simple_repeat Simple_repeat 2 32 0 2 593 255 61 0 0 chr3L 1140097 1140130 -23403427 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 593 234 105 0 0 chr3L 1140539 1140577 -23402980 + (TAA)n Simple_repeat Simple_repeat 1 38 0 2 593 225 211 0 0 chr3L 1140968 1141020 -23402537 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 593 209 196 0 42 chr3L 1142573 1142621 -23400936 + (CTG)n Simple_repeat Simple_repeat 3 48 0 2 593 213 108 0 0 chr3L 1142738 1142775 -23400782 + (CTG)n Simple_repeat Simple_repeat 3 39 0 2 593 204 263 18 0 chr3L 1144719 1144776 -23398781 + (CTAG)n Simple_repeat Simple_repeat 2 59 0 2 593 189 0 0 0 chr3L 1145716 1145737 -23397820 + (CTG)n Simple_repeat Simple_repeat 2 22 0 2 593 258 125 0 0 chr3L 1145735 1145783 -23397774 + (TTC)n Simple_repeat Simple_repeat 2 49 0 2 593 218 184 20 20 chr3L 1145964 1146014 -23397543 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 593 180 0 0 0 chr3L 1147502 1147522 -23396035 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 593 21 36 0 0 chr3L 1147837 1147865 -23395692 + AT_rich Low_complexity Low_complexity 1 28 0 2 593 282 216 27 13 chr3L 1147923 1147998 -23395559 + (CAG)n Simple_repeat Simple_repeat 3 78 0 2 593 207 0 0 0 chr3L 1148339 1148362 -23395195 + (TG)n Simple_repeat Simple_repeat 2 24 0 2 593 368 20 20 0 chr3L 1149847 1149896 -23393661 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 593 208 320 0 0 chr3L 1150502 1150602 -23392955 + (TATATG)n Simple_repeat Simple_repeat 5 104 0 2 593 189 0 0 0 chr3L 1150751 1150772 -23392785 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 593 21 57 0 0 chr3L 1151355 1151390 -23392167 + AT_rich Low_complexity Low_complexity 1 35 0 2 593 34 24 0 0 chr3L 1151882 1151923 -23391634 + AT_rich Low_complexity Low_complexity 1 41 0 2 593 25 0 0 0 chr3L 1152097 1152122 -23391435 + AT_rich Low_complexity Low_complexity 1 25 0 2 593 27 29 0 0 chr3L 1153136 1153170 -23390387 + AT_rich Low_complexity Low_complexity 1 34 0 2 593 222 62 0 0 chr3L 1153306 1153338 -23390219 + (TGGA)n Simple_repeat Simple_repeat 4 35 0 2 593 243 125 0 0 chr3L 1153863 1153903 -23389654 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 2 593 3964 2 0 2 chr3L 1154184 1154613 -23388944 + ROO_LTR LTR Pao 1 428 0 2 593 74343 1 4 2 chr3L 1154613 1162848 -23380709 + ROO_I LTR Pao 1 8256 0 2 593 3964 2 0 2 chr3L 1162848 1163277 -23380280 + ROO_LTR LTR Pao 1 428 0 2 593 23 0 0 0 chr3L 1163288 1163311 -23380246 + AT_rich Low_complexity Low_complexity 1 23 0 2 593 21 0 0 0 chr3L 1163883 1163904 -23379653 + AT_rich Low_complexity Low_complexity 1 21 0 2 593 22 35 0 0 chr3L 1163984 1164013 -23379544 + AT_rich Low_complexity Low_complexity 1 29 0 2 593 203 179 0 0 chr3L 1165147 1165186 -23378371 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 2 593 198 103 0 0 chr3L 1166180 1166209 -23377348 + (CAG)n Simple_repeat Simple_repeat 1 29 0 2 593 22 0 0 0 chr3L 1168616 1168638 -23374919 + AT_rich Low_complexity Low_complexity 1 22 0 2 593 270 164 0 0 chr3L 1168768 1168823 -23374734 + (CAT)n Simple_repeat Simple_repeat 2 56 0 2 593 186 103 0 0 chr3L 1169616 1169645 -23373912 + (A)n Simple_repeat Simple_repeat 1 29 0 2 593 299 136 17 0 chr3L 1175183 1175242 -23368315 + (TA)n Simple_repeat Simple_repeat 2 61 0 2 593 30 0 0 0 chr3L 1175344 1175374 -23368183 + AT_rich Low_complexity Low_complexity 1 30 0 2 593 34 24 0 0 chr3L 1175403 1175444 -23368113 + AT_rich Low_complexity Low_complexity 1 41 0 2 593 234 206 0 16 chr3L 1175526 1175590 -23367967 + (TTA)n Simple_repeat Simple_repeat 2 64 0 2 593 209 57 29 0 chr3L 1176341 1176376 -23367181 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 2 593 269 217 12 0 chr3L 1177129 1177212 -23366345 + (TTG)n Simple_repeat Simple_repeat 1 84 0 2 593 226 200 0 52 chr3L 1177970 1178028 -23365529 + (CAG)n Simple_repeat Simple_repeat 2 56 0 2 593 213 65 0 0 chr3L 1178822 1178853 -23364704 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 593 358 162 54 0 chr3L 1179299 1179373 -23364184 + LINEJ1_DM LINE Jockey 4930 5007 -13 2 593 24 0 0 0 chr3L 1179428 1179452 -23364105 + AT_rich Low_complexity Low_complexity 1 24 0 2 594 207 0 0 0 chr3L 1183257 1183280 -23360277 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 594 311 301 11 0 chr3L 1186753 1186846 -23356711 + (CCCCAG)n Simple_repeat Simple_repeat 5 98 0 2 594 249 33 0 0 chr3L 1187895 1187925 -23355632 + (GCTG)n Simple_repeat Simple_repeat 2 31 0 2 594 642 47 0 0 chr3L 1195736 1195822 -23347735 + (TATAA)n Simple_repeat Simple_repeat 1 86 0 2 594 27 87 0 0 chr3L 1195856 1195925 -23347632 + AT_rich Low_complexity Low_complexity 1 69 0 2 594 186 103 0 0 chr3L 1196223 1196252 -23347305 + (GA)n Simple_repeat Simple_repeat 1 29 0 2 594 27 49 0 0 chr3L 1200480 1200521 -23343036 + AT_rich Low_complexity Low_complexity 1 41 0 2 594 200 276 0 0 chr3L 1200994 1201052 -23342505 + (CAA)n Simple_repeat Simple_repeat 3 60 0 2 594 5158 7 2 2 chr3L 1219646 1220216 -23323341 + DM412 LTR Gypsy 2 571 0 2 594 49550 1 1 4 chr3L 1220202 1227326 -23316231 + DM412 LTR Gypsy 1 6897 0 2 594 23 54 0 0 chr3L 1245978 1246015 -23297542 + AT_rich Low_complexity Low_complexity 1 37 0 2 594 23 54 0 0 chr3L 1246971 1247008 -23296549 + AT_rich Low_complexity Low_complexity 1 37 0 2 594 36 0 0 0 chr3L 1251816 1251852 -23291705 + AT_rich Low_complexity Low_complexity 1 36 0 2 594 238 286 0 0 chr3L 1255676 1255746 -23287811 + GA-rich Low_complexity Low_complexity 2 71 0 2 594 21 36 0 0 chr3L 1258015 1258043 -23285514 + AT_rich Low_complexity Low_complexity 1 28 0 2 594 32 75 0 0 chr3L 1258693 1258760 -23284797 + AT_rich Low_complexity Low_complexity 1 67 0 2 594 23 0 0 0 chr3L 1260688 1260711 -23282846 + AT_rich Low_complexity Low_complexity 1 23 0 2 594 180 77 0 0 chr3L 1261851 1261877 -23281680 + (GGA)n Simple_repeat Simple_repeat 1 26 0 2 594 282 87 0 0 chr3L 1262982 1263028 -23280529 + (CGAAT)n Simple_repeat Simple_repeat 1 46 0 2 594 21 0 0 0 chr3L 1265089 1265110 -23278447 + AT_rich Low_complexity Low_complexity 1 21 0 2 594 228 35 0 0 chr3L 1265661 1265690 -23277867 + (GA)n Simple_repeat Simple_repeat 2 30 0 2 594 26 30 0 0 chr3L 1268898 1268931 -23274626 + AT_rich Low_complexity Low_complexity 1 33 0 2 594 29 0 0 0 chr3L 1270401 1270430 -23273127 + AT_rich Low_complexity Low_complexity 1 29 0 2 594 24 53 0 0 chr3L 1270813 1270851 -23272706 + AT_rich Low_complexity Low_complexity 1 38 0 2 594 216 196 0 0 chr3L 1272899 1272945 -23270612 + (CAATT)n Simple_repeat Simple_repeat 4 49 0 2 594 26 30 0 0 chr3L 1275496 1275529 -23268028 + AT_rich Low_complexity Low_complexity 1 33 0 2 594 267 161 0 0 chr3L 1277773 1277829 -23265728 + (AACTG)n Simple_repeat Simple_repeat 5 60 0 2 594 21 0 0 0 chr3L 1280595 1280616 -23262941 + AT_rich Low_complexity Low_complexity 1 21 0 2 594 252 0 0 0 chr3L 1282896 1282924 -23260633 + (ACTG)n Simple_repeat Simple_repeat 2 29 0 2 594 213 217 0 0 chr3L 1283127 1283173 -23260384 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 594 26 64 0 0 chr3L 1294380 1294427 -23249130 + AT_rich Low_complexity Low_complexity 1 47 0 2 594 21 0 0 0 chr3L 1300388 1300409 -23243148 + AT_rich Low_complexity Low_complexity 1 21 0 2 594 215 31 31 0 chr3L 1301332 1301364 -23242193 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2 594 189 0 0 0 chr3L 1301578 1301599 -23241958 + (GGTTG)n Simple_repeat Simple_repeat 4 24 0 2 594 198 103 0 0 chr3L 1307190 1307219 -23236338 + (TTTTTG)n Simple_repeat Simple_repeat 6 34 0 2 595 26 74 0 0 chr3L 1332260 1332314 -23211243 + AT_rich Low_complexity Low_complexity 1 54 0 2 595 186 171 0 0 chr3L 1335534 1335575 -23207982 + GA-rich Low_complexity Low_complexity 1 41 0 2 595 23 0 0 0 chr3L 1350909 1350932 -23192625 + AT_rich Low_complexity Low_complexity 1 23 0 2 595 238 134 15 15 chr3L 1350966 1351034 -23192523 + A-rich Low_complexity Low_complexity 3 70 0 2 595 22 0 0 0 chr3L 1354292 1354314 -23189243 + AT_rich Low_complexity Low_complexity 1 22 0 2 595 254 250 23 0 chr3L 1357005 1357093 -23186464 + (TCCA)n Simple_repeat Simple_repeat 3 92 0 2 595 234 0 0 0 chr3L 1359360 1359386 -23184171 + (TCC)n Simple_repeat Simple_repeat 3 28 0 2 595 191 114 0 28 chr3L 1362236 1362272 -23181285 + (ATTTG)n Simple_repeat Simple_repeat 2 36 0 2 595 270 56 0 0 chr3L 1362308 1362344 -23181213 + (CTG)n Simple_repeat Simple_repeat 1 36 0 2 595 283 273 16 65 chr3L 1368617 1368801 -23174756 + T-rich Low_complexity Low_complexity 6 180 0 2 595 203 262 0 0 chr3L 1372237 1372298 -23171259 + A-rich Low_complexity Low_complexity 1 61 0 2 595 21 0 0 0 chr3L 1373891 1373912 -23169645 + AT_rich Low_complexity Low_complexity 1 21 0 2 595 213 65 0 0 chr3L 1375838 1375869 -23167688 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 2 595 240 86 0 0 chr3L 1377243 1377278 -23166279 + (TTCC)n Simple_repeat Simple_repeat 3 37 0 2 595 205 156 0 0 chr3L 1393605 1393637 -23149920 + (CAGAC)n Simple_repeat Simple_repeat 4 35 0 2 595 240 86 0 0 chr3L 1394617 1394652 -23148905 + (CAGT)n Simple_repeat Simple_repeat 1 35 0 2 595 198 103 0 0 chr3L 1395816 1395845 -23147712 + (TCCG)n Simple_repeat Simple_repeat 4 32 0 2 595 322 39 39 19 chr3L 1396780 1396832 -23146725 + (CTATT)n Simple_repeat Simple_repeat 2 54 0 2 595 21 0 0 0 chr3L 1397265 1397286 -23146271 + AT_rich Low_complexity Low_complexity 1 21 0 2 595 234 62 0 0 chr3L 1403553 1403585 -23139972 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 595 267 31 0 0 chr3L 1407531 1407563 -23135994 + (CAT)n Simple_repeat Simple_repeat 1 32 0 2 595 246 222 0 18 chr3L 1407628 1407683 -23135874 + (TTG)n Simple_repeat Simple_repeat 1 54 0 2 595 198 0 0 0 chr3L 1407918 1407940 -23135617 + (CAT)n Simple_repeat Simple_repeat 2 23 0 2 595 225 65 0 0 chr3L 1414475 1414506 -23129051 + (CGAAT)n Simple_repeat Simple_repeat 5 35 0 2 595 21 0 0 0 chr3L 1421215 1421236 -23122321 + AT_rich Low_complexity Low_complexity 1 21 0 2 595 236 148 37 0 chr3L 1424460 1424514 -23119043 + (CACCAT)n Simple_repeat Simple_repeat 6 61 0 2 595 216 67 0 0 chr3L 1424794 1424824 -23118733 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 595 48175 3 0 0 chr3L 1424831 1430008 -23113549 + DMRT1A LINE R1 7 5183 0 2 595 189 0 0 0 chr3L 1431594 1431615 -23111942 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 595 249 98 0 0 chr3L 1440118 1440159 -23103398 + (GGA)n Simple_repeat Simple_repeat 1 41 0 2 595 216 0 0 0 chr3L 1440860 1440884 -23102673 + (CAGC)n Simple_repeat Simple_repeat 3 26 0 2 595 180 125 0 0 chr3L 1441149 1441181 -23102376 + (T)n Simple_repeat Simple_repeat 1 32 0 2 596 294 29 0 0 chr3L 1442438 1442473 -23101084 + (ACTG)n Simple_repeat Simple_repeat 1 35 0 2 596 198 0 0 0 chr3L 1446044 1446066 -23097491 + (ATG)n Simple_repeat Simple_repeat 1 22 0 2 596 210 128 0 0 chr3L 1447316 1447355 -23096202 + (TTGG)n Simple_repeat Simple_repeat 3 41 0 2 596 183 28 0 77 chr3L 1449452 1449491 -23094066 + (CATA)n Simple_repeat Simple_repeat 4 39 0 2 596 40 0 0 0 chr3L 1450117 1450157 -23093400 + AT_rich Low_complexity Low_complexity 1 40 0 2 596 240 149 0 0 chr3L 1451622 1451669 -23091888 + (CAATC)n Simple_repeat Simple_repeat 1 47 0 2 596 207 0 0 0 chr3L 1451908 1451931 -23091626 + (A)n Simple_repeat Simple_repeat 1 23 0 2 596 206 218 0 0 chr3L 1452826 1452881 -23090676 + (CAG)n Simple_repeat Simple_repeat 1 55 0 2 596 21 0 0 0 chr3L 1454079 1454100 -23089457 + AT_rich Low_complexity Low_complexity 1 21 0 2 596 222 91 0 0 chr3L 1461187 1461220 -23082337 + (TTCC)n Simple_repeat Simple_repeat 1 33 0 2 596 24 32 0 0 chr3L 1464576 1464607 -23078950 + AT_rich Low_complexity Low_complexity 1 31 0 2 596 21 36 0 0 chr3L 1464825 1464853 -23078704 + AT_rich Low_complexity Low_complexity 1 28 0 2 596 213 94 0 0 chr3L 1468031 1468063 -23075494 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 596 180 152 0 0 chr3L 1468115 1468148 -23075409 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 2 596 216 0 0 0 chr3L 1468188 1468212 -23075345 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 596 204 67 0 0 chr3L 1468284 1468314 -23075243 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2 596 261 83 0 0 chr3L 1468622 1468658 -23074899 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 596 194 83 56 0 chr3L 1468824 1468860 -23074697 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 2 596 330 45 0 0 chr3L 1470008 1470052 -23073505 + (CAATC)n Simple_repeat Simple_repeat 3 46 0 2 596 240 35 0 0 chr3L 1472780 1472809 -23070748 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 596 21 0 0 0 chr3L 1475427 1475448 -23068109 + AT_rich Low_complexity Low_complexity 1 21 0 2 596 21 0 0 0 chr3L 1475607 1475628 -23067929 + AT_rich Low_complexity Low_complexity 1 21 0 2 596 189 0 0 0 chr3L 1481959 1481980 -23061577 + (A)n Simple_repeat Simple_repeat 1 21 0 2 596 219 88 0 0 chr3L 1485581 1485615 -23057942 + (GA)n Simple_repeat Simple_repeat 1 34 0 2 596 9374 27 0 2 chr3L 1485764 1486871 -23056686 + PROTOP_A DNA P 1 1105 0 2 596 618 15 0 0 chr3L 1490338 1490406 -23053151 + PROTOP_A DNA P 1 68 -1037 2 596 5094 15 3 7 chr3L 1490405 1491012 -23052545 + PROTOP_A DNA P 501 1105 0 2 596 201 143 94 16 chr3L 1499410 1499474 -23044083 + (ATTTG)n Simple_repeat Simple_repeat 2 70 0 2 596 192 49 47 47 chr3L 1500875 1500918 -23042639 + (TAG)n Simple_repeat Simple_repeat 1 43 0 2 596 242 0 61 0 chr3L 1501474 1501507 -23042050 + (AGTAG)n Simple_repeat Simple_repeat 1 35 0 2 596 4554 6 0 0 chr3L 1506055 1506562 -23036995 + DM176_LTR LTR Gypsy 1 507 0 2 596 56443 1 0 16 chr3L 1506562 1513083 -23030474 + DM176_I LTR Gypsy 1 6420 0 2 596 4554 6 0 0 chr3L 1513083 1513590 -23029967 + DM176_LTR LTR Gypsy 1 507 0 2 596 29 47 0 0 chr3L 1515348 1515391 -23028166 + AT_rich Low_complexity Low_complexity 1 43 0 2 596 26 30 0 0 chr3L 1534207 1534240 -23009317 + AT_rich Low_complexity Low_complexity 1 33 0 2 596 22 35 0 0 chr3L 1534484 1534513 -23009044 + AT_rich Low_complexity Low_complexity 1 29 0 2 596 25 31 0 0 chr3L 1538359 1538391 -23005166 + AT_rich Low_complexity Low_complexity 1 32 0 2 596 29 28 0 0 chr3L 1545882 1545918 -22997639 + AT_rich Low_complexity Low_complexity 1 36 0 2 596 22 0 0 0 chr3L 1553022 1553044 -22990513 + AT_rich Low_complexity Low_complexity 1 22 0 2 596 248 200 16 62 chr3L 1556370 1556434 -22987123 - R2_DM LINE R2 -504 3103 3043 2 596 22 70 0 0 chr3L 1558592 1558635 -22984922 + AT_rich Low_complexity Low_complexity 1 43 0 2 596 25 31 0 0 chr3L 1567642 1567674 -22975883 + AT_rich Low_complexity Low_complexity 1 32 0 2 597 25 83 0 0 chr3L 1576444 1576504 -22967053 + AT_rich Low_complexity Low_complexity 1 60 0 2 597 208 143 52 35 chr3L 1579548 1579606 -22963951 + (TTTG)n Simple_repeat Simple_repeat 1 59 0 2 597 317 24 0 23 chr3L 1579650 1579693 -22963864 + (CATA)n Simple_repeat Simple_repeat 3 44 0 2 597 247 204 0 0 chr3L 1582232 1582286 -22961271 + A-rich Low_complexity Low_complexity 1 54 0 2 597 22 0 0 0 chr3L 1584425 1584447 -22959110 + AT_rich Low_complexity Low_complexity 1 22 0 2 597 31 0 0 0 chr3L 1585958 1585989 -22957568 + AT_rich Low_complexity Low_complexity 1 31 0 2 597 28 0 0 0 chr3L 1589145 1589173 -22954384 + AT_rich Low_complexity Low_complexity 1 28 0 2 597 31 0 0 0 chr3L 1589587 1589618 -22953939 + AT_rich Low_complexity Low_complexity 1 31 0 2 597 25 31 0 0 chr3L 1591495 1591527 -22952030 + AT_rich Low_complexity Low_complexity 1 32 0 2 597 203 156 0 0 chr3L 1593783 1593815 -22949742 + (CAG)n Simple_repeat Simple_repeat 2 33 0 2 597 201 129 0 0 chr3L 1599421 1599452 -22944105 + (CAG)n Simple_repeat Simple_repeat 2 32 0 2 597 198 0 0 0 chr3L 1600186 1600208 -22943349 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 2 597 222 128 0 60 chr3L 1600310 1600360 -22943197 + A-rich Low_complexity Low_complexity 2 48 0 2 597 31 0 0 0 chr3L 1600711 1600742 -22942815 + AT_rich Low_complexity Low_complexity 1 31 0 2 597 36 0 0 0 chr3L 1605092 1605128 -22938429 + AT_rich Low_complexity Low_complexity 1 36 0 2 597 183 42 0 0 chr3L 1609507 1609531 -22934026 + (A)n Simple_repeat Simple_repeat 1 24 0 2 597 237 200 0 0 chr3L 1614260 1614300 -22929257 + (TTCGGG)n Simple_repeat Simple_repeat 5 44 0 2 597 189 74 0 0 chr3L 1614421 1614448 -22929109 + (CTG)n Simple_repeat Simple_repeat 3 29 0 2 597 23 33 0 0 chr3L 1618311 1618341 -22925216 + AT_rich Low_complexity Low_complexity 1 30 0 2 597 22 0 0 0 chr3L 1620362 1620384 -22923173 + AT_rich Low_complexity Low_complexity 1 22 0 2 597 202 154 0 25 chr3L 1620731 1620771 -22922786 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 2 597 207 191 24 0 chr3L 1620825 1620867 -22922690 + (CAG)n Simple_repeat Simple_repeat 1 43 0 2 597 273 29 0 0 chr3L 1626555 1626589 -22916968 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 597 201 143 0 0 chr3L 1627025 1627060 -22916497 + (TCC)n Simple_repeat Simple_repeat 2 36 0 2 597 300 111 0 0 chr3L 1627956 1628001 -22915556 + (TTGG)n Simple_repeat Simple_repeat 3 47 0 2 597 220 195 0 24 chr3L 1628130 1628172 -22915385 + (CAG)n Simple_repeat Simple_repeat 1 41 0 2 597 235 113 19 19 chr3L 1628232 1628286 -22915271 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 597 27 0 0 0 chr3L 1630348 1630375 -22913182 + AT_rich Low_complexity Low_complexity 1 27 0 2 597 24 0 0 0 chr3L 1631946 1631970 -22911587 + AT_rich Low_complexity Low_complexity 1 24 0 2 597 246 105 0 0 chr3L 1632668 1632706 -22910851 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 597 279 0 0 0 chr3L 1633185 1633216 -22910341 + (TTGG)n Simple_repeat Simple_repeat 1 31 0 2 597 186 128 0 0 chr3L 1633360 1633399 -22910158 + (TTG)n Simple_repeat Simple_repeat 3 41 0 2 597 195 42 0 0 chr3L 1635085 1635109 -22908448 + (GTGTG)n Simple_repeat Simple_repeat 5 28 0 2 597 204 150 0 24 chr3L 1636984 1637025 -22906532 + (TGG)n Simple_repeat Simple_repeat 2 41 0 2 597 249 98 0 0 chr3L 1637081 1637122 -22906435 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 597 206 163 0 23 chr3L 1661102 1661146 -22882411 + CT-rich Low_complexity Low_complexity 2 44 0 2 597 27 62 0 0 chr3L 1662665 1662713 -22880844 + AT_rich Low_complexity Low_complexity 1 48 0 2 597 258 105 0 0 chr3L 1673618 1673656 -22869901 + (CGA)n Simple_repeat Simple_repeat 2 39 0 2 597 27 0 0 0 chr3L 1674089 1674116 -22869441 + AT_rich Low_complexity Low_complexity 1 27 0 2 597 210 71 0 0 chr3L 1678051 1678079 -22865478 + (CAGCT)n Simple_repeat Simple_repeat 3 30 0 2 597 24 67 0 0 chr3L 1680568 1680613 -22862944 + AT_rich Low_complexity Low_complexity 1 45 0 2 597 253 253 58 0 chr3L 1680647 1680734 -22862823 + XDMR_DM Unknown Unknown 8 99 -261 2 597 426 302 30 33 chr3L 1680769 1681070 -22862487 - SAR_DM Satellite Satellite -595 877 578 2 597 334 296 42 38 chr3L 1682280 1682299 -22861258 - SAR_DM Satellite Satellite -595 877 831 2 597 410 174 37 43 chr3L 1682299 1682461 -22861096 + XDMR_DM Unknown Unknown 188 348 -12 2 597 334 296 42 38 chr3L 1682461 1682543 -22861014 - SAR_DM Satellite Satellite -595 830 614 2 597 207 188 0 0 chr3L 1686972 1687020 -22856537 + (CATTT)n Simple_repeat Simple_repeat 4 51 0 2 597 203 240 40 0 chr3L 1687748 1687798 -22855759 + (TATG)n Simple_repeat Simple_repeat 3 54 0 2 597 215 209 0 0 chr3L 1688638 1688681 -22854876 + (CTG)n Simple_repeat Simple_repeat 2 44 0 2 597 230 196 0 18 chr3L 1689376 1689433 -22854124 + (TG)n Simple_repeat Simple_repeat 1 56 0 2 597 192 135 0 0 chr3L 1695784 1695821 -22847736 + (CAG)n Simple_repeat Simple_repeat 1 37 0 2 597 557 265 75 35 chr3L 1700570 1700852 -22842705 - SAR_DM Satellite Satellite -590 882 590 2 597 31 0 0 0 chr3L 1700929 1700960 -22842597 + AT_rich Low_complexity Low_complexity 1 31 0 2 597 24 53 0 0 chr3L 1702097 1702135 -22841422 + AT_rich Low_complexity Low_complexity 1 38 0 2 597 24 0 0 0 chr3L 1702176 1702200 -22841357 + AT_rich Low_complexity Low_complexity 1 24 0 2 597 205 179 0 0 chr3L 1703068 1703107 -22840450 + (CAATC)n Simple_repeat Simple_repeat 2 40 0 2 598 234 283 0 0 chr3L 1710386 1710446 -22833111 + (CTG)n Simple_repeat Simple_repeat 3 62 0 2 598 215 209 0 0 chr3L 1714245 1714288 -22829269 + (CAA)n Simple_repeat Simple_repeat 1 43 0 2 598 22 0 0 0 chr3L 1715713 1715735 -22827822 + AT_rich Low_complexity Low_complexity 1 22 0 2 598 209 208 0 0 chr3L 1723069 1723117 -22820440 + T-rich Low_complexity Low_complexity 1 48 0 2 598 24 32 0 0 chr3L 1739436 1739467 -22804090 + AT_rich Low_complexity Low_complexity 1 31 0 2 598 1586 0 0 0 chr3L 1740908 1741094 -22802463 + POGON1 DNA Pogo 1 186 0 2 598 202 200 0 0 chr3L 1750583 1750623 -22792934 + (CAG)n Simple_repeat Simple_repeat 1 40 0 2 598 23 33 0 0 chr3L 1755929 1755959 -22787598 + AT_rich Low_complexity Low_complexity 1 30 0 2 598 44 20 0 0 chr3L 1775426 1775477 -22768080 + AT_rich Low_complexity Low_complexity 1 51 0 2 598 25 0 0 0 chr3L 1784110 1784135 -22759422 + AT_rich Low_complexity Low_complexity 1 25 0 2 598 21 0 0 0 chr3L 1802919 1802940 -22740617 + AT_rich Low_complexity Low_complexity 1 21 0 2 598 195 42 0 0 chr3L 1805430 1805454 -22738103 + (CAG)n Simple_repeat Simple_repeat 3 26 0 2 598 243 173 0 100 chr3L 1805557 1805572 -22737985 + ROO_I LTR Pao 644 723 -7532 2 598 245 243 40 0 chr3L 1805572 1805646 -22737911 + BS LINE Jockey 2047 2123 -3003 2 598 29 78 0 0 chr3L 1805991 1806055 -22737502 + AT_rich Low_complexity Low_complexity 1 64 0 2 598 28 0 0 0 chr3L 1806147 1806175 -22737382 + AT_rich Low_complexity Low_complexity 1 28 0 2 598 32 43 0 0 chr3L 1809783 1809829 -22733728 + AT_rich Low_complexity Low_complexity 1 46 0 2 598 23 0 0 0 chr3L 1810806 1810829 -22732728 + AT_rich Low_complexity Low_complexity 1 23 0 2 598 26 30 0 0 chr3L 1812968 1813001 -22730556 + AT_rich Low_complexity Low_complexity 1 33 0 2 598 225 159 0 0 chr3L 1813962 1814006 -22729551 + (ATTCG)n Simple_repeat Simple_repeat 3 46 0 2 598 211 146 24 0 chr3L 1815315 1815356 -22728201 + T-rich Low_complexity Low_complexity 5 46 0 2 598 25 51 0 0 chr3L 1815981 1816020 -22727537 + AT_rich Low_complexity Low_complexity 1 39 0 2 598 207 0 0 0 chr3L 1818453 1818476 -22725081 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2 598 22 35 0 0 chr3L 1819913 1819942 -22723615 + AT_rich Low_complexity Low_complexity 1 29 0 2 598 266 219 14 0 chr3L 1822490 1822563 -22720994 + (CCA)n Simple_repeat Simple_repeat 2 75 0 2 598 207 156 0 0 chr3L 1826937 1826969 -22716588 + (CGGT)n Simple_repeat Simple_repeat 4 35 0 2 598 189 74 0 0 chr3L 1830880 1830907 -22712650 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 598 22 35 0 0 chr3L 1831087 1831116 -22712441 + AT_rich Low_complexity Low_complexity 1 29 0 2 598 22 0 0 0 chr3L 1832570 1832592 -22710965 + AT_rich Low_complexity Low_complexity 1 22 0 2 598 256 197 13 38 chr3L 1833260 1833339 -22710218 + T-rich Low_complexity Low_complexity 5 81 0 2 599 22 35 0 0 chr3L 1838096 1838125 -22705432 + AT_rich Low_complexity Low_complexity 1 29 0 2 599 201 122 24 24 chr3L 1839442 1839484 -22704073 + (TAA)n Simple_repeat Simple_repeat 1 42 0 2 599 23 0 0 0 chr3L 1840375 1840398 -22703159 + AT_rich Low_complexity Low_complexity 1 23 0 2 599 180 0 0 0 chr3L 1843484 1843504 -22700053 + (C)n Simple_repeat Simple_repeat 1 20 0 2 599 180 97 0 0 chr3L 1844259 1844290 -22699267 + (ACTAG)n Simple_repeat Simple_repeat 2 32 0 2 599 29 28 0 0 chr3L 1847219 1847255 -22696302 + AT_rich Low_complexity Low_complexity 1 36 0 2 599 249 83 0 0 chr3L 1847595 1847631 -22695926 + (CACTC)n Simple_repeat Simple_repeat 2 37 0 2 599 213 180 0 0 chr3L 1851925 1851975 -22691582 + (CTG)n Simple_repeat Simple_repeat 3 52 0 2 599 21 0 0 0 chr3L 1859115 1859136 -22684421 + AT_rich Low_complexity Low_complexity 1 21 0 2 599 30 45 0 0 chr3L 1859150 1859194 -22684363 + AT_rich Low_complexity Low_complexity 1 44 0 2 599 300 183 24 12 chr3L 1859794 1859877 -22683680 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 599 25 51 0 0 chr3L 1860326 1860365 -22683192 + AT_rich Low_complexity Low_complexity 1 39 0 2 599 230 229 0 0 chr3L 1861497 1861558 -22681999 + (TG)n Simple_repeat Simple_repeat 1 61 0 2 599 31 76 0 0 chr3L 1862314 1862380 -22681177 + AT_rich Low_complexity Low_complexity 1 66 0 2 599 27 0 0 0 chr3L 1862420 1862447 -22681110 + AT_rich Low_complexity Low_complexity 1 27 0 2 599 264 100 0 0 chr3L 1866393 1866433 -22677124 + (GGA)n Simple_repeat Simple_repeat 2 41 0 2 599 22 35 0 0 chr3L 1868652 1868681 -22674876 + AT_rich Low_complexity Low_complexity 1 29 0 2 599 210 220 0 0 chr3L 1869371 1869430 -22674127 + (ATTCG)n Simple_repeat Simple_repeat 5 63 0 2 599 366 139 0 0 chr3L 1878476 1878548 -22665009 + (CTG)n Simple_repeat Simple_repeat 3 74 0 2 599 201 39 0 0 chr3L 1880201 1880227 -22663330 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 599 222 217 0 0 chr3L 1881589 1881635 -22661922 + A-rich Low_complexity Low_complexity 5 50 0 2 599 21 57 0 0 chr3L 1883429 1883464 -22660093 + AT_rich Low_complexity Low_complexity 1 35 0 2 599 21 36 0 0 chr3L 1883710 1883738 -22659819 + AT_rich Low_complexity Low_complexity 1 28 0 2 599 189 147 0 0 chr3L 1885543 1885577 -22657980 + (TC)n Simple_repeat Simple_repeat 1 34 0 2 599 249 128 0 0 chr3L 1886388 1886427 -22657130 + DOC2_DM LINE Jockey 552 590 -4203 2 599 23 0 0 0 chr3L 1894574 1894597 -22648960 + AT_rich Low_complexity Low_complexity 1 23 0 2 599 35 24 0 0 chr3L 1897852 1897894 -22645663 + AT_rich Low_complexity Low_complexity 1 42 0 2 599 192 77 0 0 chr3L 1902584 1902610 -22640947 + (CTG)n Simple_repeat Simple_repeat 1 26 0 2 599 34 55 0 0 chr3L 1903339 1903394 -22640163 + AT_rich Low_complexity Low_complexity 1 55 0 2 599 21 0 0 0 chr3L 1903561 1903582 -22639975 + AT_rich Low_complexity Low_complexity 1 21 0 2 599 23 33 0 0 chr3L 1910767 1910797 -22632760 + AT_rich Low_complexity Low_complexity 1 30 0 2 599 27 0 0 0 chr3L 1914851 1914878 -22628679 + AT_rich Low_complexity Low_complexity 1 27 0 2 599 28 29 0 0 chr3L 1919194 1919229 -22624328 + AT_rich Low_complexity Low_complexity 1 35 0 2 599 207 0 0 0 chr3L 1919748 1919771 -22623786 + (GA)n Simple_repeat Simple_repeat 1 23 0 2 599 30 45 0 0 chr3L 1920812 1920856 -22622701 + AT_rich Low_complexity Low_complexity 1 44 0 2 599 220 214 0 0 chr3L 1921050 1921092 -22622465 + (CA)n Simple_repeat Simple_repeat 2 43 0 2 599 186 143 0 0 chr3L 1921101 1921136 -22622421 + (GA)n Simple_repeat Simple_repeat 1 35 0 2 599 201 159 0 0 chr3L 1923306 1923350 -22620207 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 599 231 103 0 0 chr3L 1923755 1923794 -22619763 + (TCTG)n Simple_repeat Simple_repeat 4 42 0 2 599 232 270 0 0 chr3L 1924321 1924395 -22619162 + (CAG)n Simple_repeat Simple_repeat 3 76 0 2 599 221 228 0 0 chr3L 1924498 1924555 -22619002 + (CAG)n Simple_repeat Simple_repeat 3 59 0 2 599 21 36 0 0 chr3L 1925000 1925028 -22618529 + AT_rich Low_complexity Low_complexity 1 28 0 2 599 304 22 22 22 chr3L 1926595 1926641 -22616916 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 599 189 0 0 0 chr3L 1926931 1926952 -22616605 + (ATG)n Simple_repeat Simple_repeat 3 23 0 2 599 216 0 0 0 chr3L 1929059 1929083 -22614474 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 599 185 65 32 0 chr3L 1930100 1930131 -22613426 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 599 338 33 32 32 chr3L 1933298 1933360 -22610197 + (CAG)n Simple_repeat Simple_repeat 1 62 0 2 599 32 57 0 0 chr3L 1939131 1939184 -22604373 + AT_rich Low_complexity Low_complexity 1 53 0 2 599 209 83 0 27 chr3L 1940240 1940277 -22603280 + (CATTC)n Simple_repeat Simple_repeat 2 37 0 2 599 21 0 0 0 chr3L 1945081 1945102 -22598455 + AT_rich Low_complexity Low_complexity 1 21 0 2 599 23 0 0 0 chr3L 1947620 1947643 -22595914 + AT_rich Low_complexity Low_complexity 1 23 0 2 599 22 35 0 0 chr3L 1949244 1949273 -22594284 + AT_rich Low_complexity Low_complexity 1 29 0 2 599 21 36 0 0 chr3L 1950342 1950370 -22593187 + AT_rich Low_complexity Low_complexity 1 28 0 2 599 22 0 0 0 chr3L 1962179 1962201 -22581356 + AT_rich Low_complexity Low_complexity 1 22 0 2 599 27 85 0 28 chr3L 1964253 1964362 -22579195 + AT_rich Low_complexity Low_complexity 1 106 0 2 600 225 296 0 36 chr3L 1970544 1970628 -22572929 + CT-rich Low_complexity Low_complexity 6 86 0 2 600 24 0 0 0 chr3L 1974404 1974428 -22569129 + AT_rich Low_complexity Low_complexity 1 24 0 2 600 222 62 0 0 chr3L 1975553 1975585 -22567972 + (CAGG)n Simple_repeat Simple_repeat 4 35 0 2 600 269 109 22 0 chr3L 1977287 1977333 -22566224 + (TGAA)n Simple_repeat Simple_repeat 4 50 0 2 600 183 100 0 0 chr3L 1977351 1977381 -22566176 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 2 600 183 100 0 0 chr3L 1980279 1980309 -22563248 + (CA)n Simple_repeat Simple_repeat 2 31 0 2 600 204 200 44 0 chr3L 1986025 1986070 -22557487 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 600 220 220 0 0 chr3L 1994008 1994058 -22549499 + A-rich Low_complexity Low_complexity 1 50 0 2 600 30 0 0 0 chr3L 1997088 1997118 -22546439 + AT_rich Low_complexity Low_complexity 1 30 0 2 600 215 232 14 0 chr3L 2003533 2003602 -22539955 + T-rich Low_complexity Low_complexity 5 74 0 2 600 200 188 0 0 chr3L 2004005 2004037 -22539520 + (CACTC)n Simple_repeat Simple_repeat 4 35 0 2 600 204 40 0 0 chr3L 2005044 2005069 -22538488 + (CAAA)n Simple_repeat Simple_repeat 3 27 0 2 600 24 0 0 0 chr3L 2005906 2005930 -22537627 + AT_rich Low_complexity Low_complexity 1 24 0 2 600 404 128 0 13 chr3L 2018995 2019074 -22524483 + (TCCA)n Simple_repeat Simple_repeat 2 79 0 2 600 24 53 0 0 chr3L 2020480 2020518 -22523039 + AT_rich Low_complexity Low_complexity 1 38 0 2 600 21 0 0 0 chr3L 2023638 2023659 -22519898 + AT_rich Low_complexity Low_complexity 1 21 0 2 600 216 0 0 0 chr3L 2028415 2028439 -22515118 + (A)n Simple_repeat Simple_repeat 1 24 0 2 600 261 0 0 0 chr3L 2029152 2029181 -22514376 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 600 180 97 0 0 chr3L 2029429 2029460 -22514097 + (A)n Simple_repeat Simple_repeat 1 31 0 2 600 33 0 0 0 chr3L 2033338 2033371 -22510186 + AT_rich Low_complexity Low_complexity 1 33 0 2 600 26 0 0 0 chr3L 2034077 2034103 -22509454 + AT_rich Low_complexity Low_complexity 1 26 0 2 600 26 64 0 0 chr3L 2076230 2076277 -22467280 + AT_rich Low_complexity Low_complexity 1 47 0 2 600 21 57 0 0 chr3L 2081591 2081626 -22461931 + AT_rich Low_complexity Low_complexity 1 35 0 2 600 211 140 0 23 chr3L 2088983 2089027 -22454530 + (TTAAA)n Simple_repeat Simple_repeat 3 45 0 2 600 23 0 0 0 chr3L 2090377 2090400 -22453157 + AT_rich Low_complexity Low_complexity 1 23 0 2 601 25 0 0 0 chr3L 2100532 2100557 -22443000 + AT_rich Low_complexity Low_complexity 1 25 0 2 601 26 74 0 0 chr3L 2106957 2107011 -22436546 + AT_rich Low_complexity Low_complexity 1 54 0 2 601 243 250 15 0 chr3L 2107320 2107388 -22436169 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 2 601 2442 0 0 0 chr3L 2108305 2108581 -22434976 - Copia_LTR LTR Copia 0 276 1 2 601 37077 1 0 0 chr3L 2108581 2113175 -22430382 - Copia_I LTR Copia 0 4593 1 2 601 2442 0 0 0 chr3L 2113175 2113451 -22430106 - Copia_LTR LTR Copia 0 276 1 2 601 198 118 0 0 chr3L 2114792 2114826 -22428731 + (CA)n Simple_repeat Simple_repeat 2 35 0 2 601 234 0 0 0 chr3L 2121315 2121341 -22422216 + (GGA)n Simple_repeat Simple_repeat 2 27 0 2 601 22 56 0 0 chr3L 2124838 2124874 -22418683 + AT_rich Low_complexity Low_complexity 1 36 0 2 601 189 107 0 0 chr3L 2125494 2125522 -22418035 + (CTG)n Simple_repeat Simple_repeat 3 30 0 2 601 24 53 0 0 chr3L 2126682 2126720 -22416837 + AT_rich Low_complexity Low_complexity 1 38 0 2 601 237 83 0 0 chr3L 2128447 2128483 -22415074 + (TGG)n Simple_repeat Simple_repeat 1 36 0 2 601 180 0 0 0 chr3L 2138793 2138813 -22404744 + (CGAGT)n Simple_repeat Simple_repeat 5 24 0 2 601 207 0 0 0 chr3L 2144434 2144457 -22399100 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 601 237 33 0 0 chr3L 2155452 2155482 -22388075 + (T)n Simple_repeat Simple_repeat 1 30 0 2 601 200 204 23 0 chr3L 2156828 2156872 -22386685 + (CTG)n Simple_repeat Simple_repeat 1 45 0 2 601 201 147 0 0 chr3L 2165385 2165419 -22378138 + (TTTTTG)n Simple_repeat Simple_repeat 5 38 0 2 601 28 79 0 0 chr3L 2174502 2174565 -22368992 + AT_rich Low_complexity Low_complexity 1 63 0 2 601 21 0 0 0 chr3L 2177748 2177769 -22365788 + AT_rich Low_complexity Low_complexity 1 21 0 2 601 204 40 0 0 chr3L 2180279 2180304 -22363253 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 601 21 36 0 0 chr3L 2180565 2180593 -22362964 + AT_rich Low_complexity Low_complexity 1 28 0 2 601 240 35 0 0 chr3L 2182298 2182327 -22361230 + (TC)n Simple_repeat Simple_repeat 2 30 0 2 601 27 49 0 0 chr3L 2192974 2193015 -22350542 + AT_rich Low_complexity Low_complexity 1 41 0 2 601 21 57 0 0 chr3L 2196780 2196815 -22346742 + AT_rich Low_complexity Low_complexity 1 35 0 2 601 23 0 0 0 chr3L 2203142 2203165 -22340392 + AT_rich Low_complexity Low_complexity 1 23 0 2 601 207 0 0 0 chr3L 2206409 2206432 -22337125 + (T)n Simple_repeat Simple_repeat 1 23 0 2 601 198 71 0 0 chr3L 2209454 2209482 -22334075 + (CAGAA)n Simple_repeat Simple_repeat 1 28 0 2 601 235 67 0 62 chr3L 2217769 2217817 -22325740 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 2 601 183 129 0 0 chr3L 2220226 2220257 -22323300 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 601 496 281 52 43 chr3L 2222138 2222826 -22320731 - SAR_DM Satellite Satellite -534 693 1 2 601 21 0 0 0 chr3L 2222893 2222914 -22320643 + AT_rich Low_complexity Low_complexity 1 21 0 2 601 230 136 23 0 chr3L 2226269 2226313 -22317244 + (TACTG)n Simple_repeat Simple_repeat 1 45 0 2 602 35 0 0 0 chr3L 2228906 2228941 -22314616 + AT_rich Low_complexity Low_complexity 1 35 0 2 602 22 0 0 0 chr3L 2237781 2237803 -22305754 + AT_rich Low_complexity Low_complexity 1 22 0 2 602 203 176 0 0 chr3L 2238099 2238133 -22305424 + (CATA)n Simple_repeat Simple_repeat 4 37 0 2 602 292 224 9 45 chr3L 2243884 2243996 -22299561 + RSP Satellite Satellite 4 111 -7 2 602 225 65 0 0 chr3L 2247373 2247404 -22296153 + (TTAG)n Simple_repeat Simple_repeat 3 33 0 2 602 218 180 16 0 chr3L 2252744 2252805 -22290752 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 602 23 0 0 0 chr3L 2262764 2262787 -22280770 + AT_rich Low_complexity Low_complexity 1 23 0 2 602 22 0 0 0 chr3L 2281093 2281115 -22262442 + AT_rich Low_complexity Low_complexity 1 22 0 2 602 21 100 0 0 chr3L 2281142 2281212 -22262345 + AT_rich Low_complexity Low_complexity 1 70 0 2 602 192 152 0 0 chr3L 2285708 2285741 -22257816 + (TATATG)n Simple_repeat Simple_repeat 4 36 0 2 602 24 53 0 0 chr3L 2299585 2299623 -22243934 + AT_rich Low_complexity Low_complexity 1 38 0 2 602 22 0 0 0 chr3L 2307366 2307388 -22236169 + AT_rich Low_complexity Low_complexity 1 22 0 2 602 41 0 0 0 chr3L 2309802 2309843 -22233714 + AT_rich Low_complexity Low_complexity 1 41 0 2 602 22 0 0 0 chr3L 2312845 2312867 -22230690 + AT_rich Low_complexity Low_complexity 1 22 0 2 602 21 0 0 0 chr3L 2320624 2320645 -22222912 + AT_rich Low_complexity Low_complexity 1 21 0 2 602 300 176 0 0 chr3L 2322770 2322838 -22220719 + (AACTG)n Simple_repeat Simple_repeat 3 70 0 2 602 21 0 0 0 chr3L 2323014 2323035 -22220522 + AT_rich Low_complexity Low_complexity 1 21 0 2 602 34 72 0 0 chr3L 2323120 2323189 -22220368 + AT_rich Low_complexity Low_complexity 1 69 0 2 602 27 0 0 0 chr3L 2323266 2323293 -22220264 + AT_rich Low_complexity Low_complexity 1 27 0 2 602 22 0 0 0 chr3L 2324766 2324788 -22218769 + AT_rich Low_complexity Low_complexity 1 22 0 2 602 201 94 0 0 chr3L 2325452 2325484 -22218073 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 602 180 0 0 0 chr3L 2337974 2337994 -22205563 + (A)n Simple_repeat Simple_repeat 1 20 0 2 602 26 0 0 0 chr3L 2338248 2338274 -22205283 + AT_rich Low_complexity Low_complexity 1 26 0 2 602 21 0 0 0 chr3L 2338504 2338525 -22205032 + AT_rich Low_complexity Low_complexity 1 21 0 2 602 180 111 0 0 chr3L 2338567 2338594 -22204963 + (CAA)n Simple_repeat Simple_repeat 3 29 0 2 602 230 219 0 0 chr3L 2338876 2338917 -22204640 + (CTG)n Simple_repeat Simple_repeat 3 43 0 2 602 22 35 0 0 chr3L 2342478 2342507 -22201050 + AT_rich Low_complexity Low_complexity 1 29 0 2 602 209 98 24 0 chr3L 2345509 2345550 -22198007 + (TTAAA)n Simple_repeat Simple_repeat 2 43 0 2 602 23 0 0 0 chr3L 2346925 2346948 -22196609 + AT_rich Low_complexity Low_complexity 1 23 0 2 602 207 0 0 0 chr3L 2349952 2349975 -22193582 + (A)n Simple_repeat Simple_repeat 1 23 0 2 602 22 0 0 0 chr3L 2356775 2356797 -22186760 + AT_rich Low_complexity Low_complexity 1 22 0 2 602 26 50 0 0 chr3L 2356944 2356984 -22186573 + AT_rich Low_complexity Low_complexity 1 40 0 2 602 210 37 0 0 chr3L 2358805 2358832 -22184725 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 603 28 0 0 0 chr3L 2360444 2360472 -22183085 + AT_rich Low_complexity Low_complexity 1 28 0 2 603 27 49 0 0 chr3L 2367853 2367894 -22175663 + AT_rich Low_complexity Low_complexity 1 41 0 2 603 202 204 0 0 chr3L 2368731 2368775 -22174782 + (CTG)n Simple_repeat Simple_repeat 2 45 0 2 603 25 65 0 0 chr3L 2372067 2372113 -22171444 + AT_rich Low_complexity Low_complexity 1 46 0 2 603 353 295 8 8 chr3L 2374424 2374554 -22169003 + GA-rich Low_complexity Low_complexity 1 130 0 2 603 195 42 0 0 chr3L 2380537 2380561 -22162996 + (TTCTG)n Simple_repeat Simple_repeat 2 25 0 2 603 23 0 0 0 chr3L 2383503 2383526 -22160031 + AT_rich Low_complexity Low_complexity 1 23 0 2 603 219 36 0 0 chr3L 2383556 2383584 -22159973 + (T)n Simple_repeat Simple_repeat 1 28 0 2 603 217 220 0 0 chr3L 2386426 2386476 -22157081 + CT-rich Low_complexity Low_complexity 3 52 0 2 603 22 0 0 0 chr3L 2388039 2388061 -22155496 + AT_rich Low_complexity Low_complexity 1 22 0 2 603 21 0 0 0 chr3L 2394454 2394475 -22149082 + AT_rich Low_complexity Low_complexity 1 21 0 2 603 22 0 0 0 chr3L 2396417 2396439 -22147118 + AT_rich Low_complexity Low_complexity 1 22 0 2 603 212 0 36 0 chr3L 2396609 2396637 -22146920 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2 603 26 0 0 0 chr3L 2398788 2398814 -22144743 + AT_rich Low_complexity Low_complexity 1 26 0 2 603 21 0 0 0 chr3L 2401816 2401837 -22141720 + AT_rich Low_complexity Low_complexity 1 21 0 2 603 23 33 0 0 chr3L 2409080 2409110 -22134447 + AT_rich Low_complexity Low_complexity 1 30 0 2 603 225 94 0 0 chr3L 2412720 2412752 -22130805 + (CACCAT)n Simple_repeat Simple_repeat 6 37 0 2 603 207 0 0 0 chr3L 2414599 2414622 -22128935 + (T)n Simple_repeat Simple_repeat 1 23 0 2 603 27 0 0 0 chr3L 2416097 2416124 -22127433 + AT_rich Low_complexity Low_complexity 1 27 0 2 603 21 36 0 0 chr3L 2417240 2417268 -22126289 + AT_rich Low_complexity Low_complexity 1 28 0 2 603 28 71 0 0 chr3L 2417542 2417598 -22125959 + AT_rich Low_complexity Low_complexity 1 56 0 2 603 288 154 0 0 chr3L 2417819 2417871 -22125686 + (TTG)n Simple_repeat Simple_repeat 1 52 0 2 603 300 291 12 0 chr3L 2419201 2419287 -22124270 + (TTG)n Simple_repeat Simple_repeat 1 87 0 2 603 185 94 31 0 chr3L 2422913 2422945 -22120612 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 2 603 21 0 0 0 chr3L 2426443 2426464 -22117093 + AT_rich Low_complexity Low_complexity 1 21 0 2 603 202 156 22 22 chr3L 2427376 2427422 -22116135 + GA-rich Low_complexity Low_complexity 1 46 0 2 603 186 71 0 0 chr3L 2427538 2427566 -22115991 + (A)n Simple_repeat Simple_repeat 1 28 0 2 603 222 128 0 0 chr3L 2429112 2429151 -22114406 + (A)n Simple_repeat Simple_repeat 1 39 0 2 603 213 65 0 0 chr3L 2431897 2431928 -22111629 + (T)n Simple_repeat Simple_repeat 1 31 0 2 603 29 60 0 0 chr3L 2434333 2434383 -22109174 + AT_rich Low_complexity Low_complexity 1 50 0 2 603 236 30 0 29 chr3L 2435412 2435446 -22108111 + (CAG)n Simple_repeat Simple_repeat 1 33 0 2 603 255 61 0 0 chr3L 2435576 2435609 -22107948 + (CAG)n Simple_repeat Simple_repeat 2 34 0 2 603 23 0 0 0 chr3L 2436480 2436503 -22107054 + AT_rich Low_complexity Low_complexity 1 23 0 2 603 268 222 0 16 chr3L 2437097 2437161 -22106396 + (TTGGGG)n Simple_repeat Simple_repeat 4 66 0 2 603 197 130 43 0 chr3L 2439136 2439182 -22104375 + A-rich Low_complexity Low_complexity 5 52 0 2 603 180 0 0 0 chr3L 2441445 2441465 -22102092 + (ATG)n Simple_repeat Simple_repeat 2 21 0 2 603 192 125 0 0 chr3L 2442303 2442335 -22101222 + (CAA)n Simple_repeat Simple_repeat 2 33 0 2 603 214 269 0 25 chr3L 2442486 2442531 -22101026 + (CAA)n Simple_repeat Simple_repeat 3 46 0 2 603 309 140 0 0 chr3L 2442531 2442588 -22100969 + (CAG)n Simple_repeat Simple_repeat 3 59 0 2 603 214 269 0 25 chr3L 2442588 2442622 -22100935 + (CAA)n Simple_repeat Simple_repeat 2 34 0 2 603 3986 5 0 0 chr3L 2447559 2447987 -22095570 + ROO_LTR LTR Pao 1 428 0 2 603 74582 2 2 0 chr3L 2447987 2456229 -22087328 + ROO_I LTR Pao 1 8256 0 2 603 3969 7 0 0 chr3L 2456229 2456657 -22086900 + ROO_LTR LTR Pao 1 428 0 2 603 21 0 0 0 chr3L 2458467 2458488 -22085069 + AT_rich Low_complexity Low_complexity 1 21 0 2 603 28 0 0 0 chr3L 2461544 2461572 -22081985 + AT_rich Low_complexity Low_complexity 1 28 0 2 603 180 0 0 0 chr3L 2462564 2462584 -22080973 + (TG)n Simple_repeat Simple_repeat 1 20 0 2 603 227 156 0 62 chr3L 2463527 2463575 -22079982 + ROO_I LTR Pao 652 696 -7560 2 603 26 30 0 0 chr3L 2464775 2464808 -22078749 + AT_rich Low_complexity Low_complexity 1 33 0 2 603 214 162 0 0 chr3L 2465533 2465570 -22077987 + (CAG)n Simple_repeat Simple_repeat 1 37 0 2 603 222 262 0 0 chr3L 2466024 2466085 -22077472 + (CAG)n Simple_repeat Simple_repeat 1 61 0 2 603 29 0 0 0 chr3L 2467123 2467152 -22076405 + AT_rich Low_complexity Low_complexity 1 29 0 2 603 21 0 0 0 chr3L 2469087 2469108 -22074449 + AT_rich Low_complexity Low_complexity 1 21 0 2 603 216 67 0 0 chr3L 2474853 2474883 -22068674 + (TGG)n Simple_repeat Simple_repeat 2 31 0 2 603 25 31 0 0 chr3L 2479495 2479527 -22064030 + AT_rich Low_complexity Low_complexity 1 32 0 2 603 195 119 0 92 chr3L 2487802 2487867 -22055690 + (CTG)n Simple_repeat Simple_repeat 1 59 0 2 603 202 241 17 0 chr3L 2489973 2490031 -22053526 + (CAA)n Simple_repeat Simple_repeat 1 59 0 2 603 216 0 0 0 chr3L 2490344 2490368 -22053189 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 2 604 22 0 0 0 chr3L 2490415 2490437 -22053120 + AT_rich Low_complexity Low_complexity 1 22 0 2 604 189 0 0 0 chr3L 2492520 2492541 -22051016 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 604 204 125 0 0 chr3L 2493287 2493319 -22050238 + (GCTTG)n Simple_repeat Simple_repeat 2 33 0 2 604 22 0 0 0 chr3L 2499001 2499023 -22044534 + AT_rich Low_complexity Low_complexity 1 22 0 2 604 26 50 0 0 chr3L 2499188 2499228 -22044329 + AT_rich Low_complexity Low_complexity 1 40 0 2 604 200 213 0 0 chr3L 2506288 2506335 -22037222 + T-rich Low_complexity Low_complexity 1 47 0 2 604 245 282 30 30 chr3L 2508103 2508238 -22035319 + (TATATG)n Simple_repeat Simple_repeat 2 136 0 2 604 246 105 0 0 chr3L 2510075 2510113 -22033444 + (CTG)n Simple_repeat Simple_repeat 2 39 0 2 604 200 336 0 0 chr3L 2513868 2513978 -22029579 + (TCG)n Simple_repeat Simple_repeat 1 110 0 2 604 22 0 0 0 chr3L 2516222 2516244 -22027313 + AT_rich Low_complexity Low_complexity 1 22 0 2 604 21 0 0 0 chr3L 2516863 2516884 -22026673 + AT_rich Low_complexity Low_complexity 1 21 0 2 604 288 0 0 0 chr3L 2520217 2520249 -22023308 + (A)n Simple_repeat Simple_repeat 1 32 0 2 604 186 43 0 0 chr3L 2522453 2522476 -22021081 + (CAT)n Simple_repeat Simple_repeat 3 25 0 2 604 21 36 0 0 chr3L 2529145 2529173 -22014384 + AT_rich Low_complexity Low_complexity 1 28 0 2 604 186 191 0 0 chr3L 2536055 2536097 -22007460 + (CGG)n Simple_repeat Simple_repeat 2 43 0 2 604 24 0 0 0 chr3L 2539569 2539593 -22003964 + AT_rich Low_complexity Low_complexity 1 24 0 2 604 23 86 0 0 chr3L 2541588 2541646 -22001911 + AT_rich Low_complexity Low_complexity 1 58 0 2 604 183 80 0 0 chr3L 2545524 2545549 -21998008 + (AAATG)n Simple_repeat Simple_repeat 1 25 0 2 604 189 74 0 0 chr3L 2553246 2553273 -21990284 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 2 604 30 45 0 0 chr3L 2554812 2554856 -21988701 + AT_rich Low_complexity Low_complexity 1 44 0 2 604 201 74 0 0 chr3L 2555637 2555664 -21987893 + (CTTTG)n Simple_repeat Simple_repeat 3 29 0 2 604 351 65 0 0 chr3L 2556119 2556165 -21987392 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 604 218 56 0 27 chr3L 2556262 2556299 -21987258 + (TTG)n Simple_repeat Simple_repeat 3 38 0 2 604 276 91 0 0 chr3L 2556513 2556557 -21987000 + (GATTG)n Simple_repeat Simple_repeat 2 45 0 2 604 29 0 0 0 chr3L 2558447 2558476 -21985081 + AT_rich Low_complexity Low_complexity 1 29 0 2 604 264 130 0 0 chr3L 2560237 2560283 -21983274 + (CCG)n Simple_repeat Simple_repeat 2 47 0 2 604 372 103 0 0 chr3L 2561931 2561989 -21981568 + (CTG)n Simple_repeat Simple_repeat 3 60 0 2 604 21 0 0 0 chr3L 2562934 2562955 -21980602 + AT_rich Low_complexity Low_complexity 1 21 0 2 604 207 0 0 0 chr3L 2563393 2563416 -21980141 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 604 22 0 0 0 chr3L 2564245 2564267 -21979290 + AT_rich Low_complexity Low_complexity 1 22 0 2 604 223 94 75 0 chr3L 2564814 2564867 -21978690 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 604 180 0 0 0 chr3L 2565629 2565649 -21977908 + (TAG)n Simple_repeat Simple_repeat 3 22 0 2 604 225 65 0 0 chr3L 2565852 2565883 -21977674 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 604 188 163 0 23 chr3L 2566518 2566562 -21976995 + (CTG)n Simple_repeat Simple_repeat 1 43 0 2 604 25 0 0 0 chr3L 2574665 2574690 -21968867 + AT_rich Low_complexity Low_complexity 1 25 0 2 604 258 81 0 0 chr3L 2574823 2574860 -21968697 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 604 189 0 0 0 chr3L 2574968 2574989 -21968568 + (A)n Simple_repeat Simple_repeat 1 21 0 2 604 258 173 0 0 chr3L 2576009 2576084 -21967473 + CT-rich Low_complexity Low_complexity 2 76 0 2 604 21 36 0 0 chr3L 2576373 2576401 -21967156 + AT_rich Low_complexity Low_complexity 1 28 0 2 604 234 62 0 0 chr3L 2577228 2577260 -21966297 + (CAGT)n Simple_repeat Simple_repeat 1 32 0 2 604 224 100 0 24 chr3L 2578457 2578498 -21965059 + (CAA)n Simple_repeat Simple_repeat 1 40 0 2 604 192 77 0 0 chr3L 2578655 2578681 -21964876 + (CTG)n Simple_repeat Simple_repeat 3 28 0 2 604 21 0 0 0 chr3L 2578833 2578854 -21964703 + AT_rich Low_complexity Low_complexity 1 21 0 2 604 234 260 0 27 chr3L 2585973 2586048 -21957509 + CT-rich Low_complexity Low_complexity 2 74 0 2 604 29 28 0 0 chr3L 2586765 2586801 -21956756 + AT_rich Low_complexity Low_complexity 1 36 0 2 604 34 24 0 0 chr3L 2587281 2587322 -21956235 + AT_rich Low_complexity Low_complexity 1 41 0 2 604 180 77 0 0 chr3L 2590048 2590074 -21953483 + (TC)n Simple_repeat Simple_repeat 1 26 0 2 604 21 0 0 0 chr3L 2590580 2590601 -21952956 + AT_rich Low_complexity Low_complexity 1 21 0 2 604 217 159 23 0 chr3L 2592914 2592958 -21950599 + (CAG)n Simple_repeat Simple_repeat 3 47 0 2 604 22 99 0 0 chr3L 2600177 2600248 -21943309 + AT_rich Low_complexity Low_complexity 1 71 0 2 604 24 0 0 0 chr3L 2605273 2605297 -21938260 + AT_rich Low_complexity Low_complexity 1 24 0 2 604 25 0 0 0 chr3L 2608867 2608892 -21934665 + AT_rich Low_complexity Low_complexity 1 25 0 2 604 23 0 0 0 chr3L 2609780 2609803 -21933754 + AT_rich Low_complexity Low_complexity 1 23 0 2 604 227 133 0 22 chr3L 2613987 2614033 -21929524 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2 604 216 111 0 0 chr3L 2614069 2614105 -21929452 + (TG)n Simple_repeat Simple_repeat 2 37 0 2 604 210 71 0 0 chr3L 2616593 2616621 -21926936 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 604 195 42 0 0 chr3L 2617512 2617536 -21926021 + (GGAAA)n Simple_repeat Simple_repeat 4 27 0 2 604 183 139 0 0 chr3L 2617755 2617791 -21925766 + (TCC)n Simple_repeat Simple_repeat 3 38 0 2 604 183 42 0 0 chr3L 2620224 2620248 -21923309 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 605 219 69 0 0 chr3L 2625083 2625112 -21918445 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 605 24 96 0 0 chr3L 2625664 2625737 -21917820 + AT_rich Low_complexity Low_complexity 1 73 0 2 605 25 31 0 0 chr3L 2626669 2626701 -21916856 + AT_rich Low_complexity Low_complexity 1 32 0 2 605 22 0 0 0 chr3L 2627732 2627754 -21915803 + AT_rich Low_complexity Low_complexity 1 22 0 2 605 23 0 0 0 chr3L 2629693 2629716 -21913841 + AT_rich Low_complexity Low_complexity 1 23 0 2 605 27 49 0 0 chr3L 2631375 2631416 -21912141 + AT_rich Low_complexity Low_complexity 1 41 0 2 605 278 265 12 24 chr3L 2632126 2632211 -21911346 + (CATA)n Simple_repeat Simple_repeat 3 86 0 2 605 26 0 0 0 chr3L 2633307 2633333 -21910224 + AT_rich Low_complexity Low_complexity 1 26 0 2 605 200 289 24 24 chr3L 2634959 2635044 -21908513 + (CATA)n Simple_repeat Simple_repeat 1 85 0 2 605 21 36 0 0 chr3L 2635590 2635618 -21907939 + AT_rich Low_complexity Low_complexity 1 28 0 2 605 200 241 0 18 chr3L 2636116 2636171 -21907386 + (CA)n Simple_repeat Simple_repeat 2 55 0 2 605 215 231 19 0 chr3L 2636383 2636435 -21907122 + (TG)n Simple_repeat Simple_repeat 2 54 0 2 605 25 31 0 0 chr3L 2636498 2636530 -21907027 + AT_rich Low_complexity Low_complexity 1 32 0 2 605 186 103 0 0 chr3L 2638083 2638112 -21905445 + (ATG)n Simple_repeat Simple_repeat 3 31 0 2 605 222 91 0 0 chr3L 2638776 2638809 -21904748 + (CGA)n Simple_repeat Simple_repeat 2 34 0 2 605 23 68 0 0 chr3L 2641790 2641834 -21901723 + AT_rich Low_complexity Low_complexity 1 44 0 2 605 261 75 0 0 chr3L 2641893 2641933 -21901624 + (CCAA)n Simple_repeat Simple_repeat 1 40 0 2 605 246 32 0 0 chr3L 2646368 2646399 -21897158 + (CCA)n Simple_repeat Simple_repeat 3 33 0 2 605 33 0 0 0 chr3L 2651915 2651948 -21891609 + AT_rich Low_complexity Low_complexity 1 33 0 2 605 25 65 0 0 chr3L 2651980 2652026 -21891531 + AT_rich Low_complexity Low_complexity 1 46 0 2 605 30 27 0 0 chr3L 2655484 2655521 -21888036 + AT_rich Low_complexity Low_complexity 1 37 0 2 605 317 230 0 0 chr3L 2659084 2659158 -21884399 - ROO_I LTR Pao -7531 725 652 2 605 184 200 33 0 chr3L 2664180 2664240 -21879317 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2 605 234 91 0 0 chr3L 2668888 2668921 -21874636 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 605 188 35 35 0 chr3L 2672478 2672507 -21871050 + (TA)n Simple_repeat Simple_repeat 1 30 0 2 605 22 0 0 0 chr3L 2672984 2673006 -21870551 + AT_rich Low_complexity Low_complexity 1 22 0 2 605 180 111 0 0 chr3L 2677904 2677931 -21865626 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 605 225 247 32 53 chr3L 2682398 2682492 -21861065 - ROO_I LTR Pao -7525 731 640 2 605 464 278 68 66 chr3L 2684990 2685095 -21858462 + SAR_DM Satellite Satellite 343 682 -790 2 605 713 265 29 20 chr3L 2685095 2685442 -21858115 - XDMR Unknown Unknown -4 357 8 2 605 464 278 68 66 chr3L 2685442 2685605 -21857952 + SAR_DM Satellite Satellite 683 1221 -251 2 605 323 232 102 51 chr3L 2685450 2685627 -21857930 - XDMR Unknown Unknown -2 359 174 2 605 182 91 30 0 chr3L 2688110 2688143 -21855414 + (GAATG)n Simple_repeat Simple_repeat 5 38 0 2 605 241 154 0 58 chr3L 2688725 2688794 -21854763 + T-rich Low_complexity Low_complexity 2 66 0 2 605 25 65 0 0 chr3L 2690476 2690522 -21853035 + AT_rich Low_complexity Low_complexity 1 46 0 2 605 213 94 0 0 chr3L 2691724 2691756 -21851801 + (TG)n Simple_repeat Simple_repeat 2 33 0 2 605 21 36 0 0 chr3L 2694145 2694173 -21849384 + AT_rich Low_complexity Low_complexity 1 28 0 2 605 27 0 0 0 chr3L 2694707 2694734 -21848823 + AT_rich Low_complexity Low_complexity 1 27 0 2 605 25 0 0 0 chr3L 2695341 2695366 -21848191 + AT_rich Low_complexity Low_complexity 1 25 0 2 605 26 0 0 0 chr3L 2696491 2696517 -21847040 + AT_rich Low_complexity Low_complexity 1 26 0 2 605 245 284 0 0 chr3L 2699082 2699149 -21844408 + (CAGC)n Simple_repeat Simple_repeat 3 69 0 2 605 252 0 0 0 chr3L 2700727 2700755 -21842802 + (TG)n Simple_repeat Simple_repeat 1 28 0 2 605 219 69 0 0 chr3L 2704400 2704429 -21839128 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 605 207 184 41 0 chr3L 2705325 2705374 -21838183 + (CAAA)n Simple_repeat Simple_repeat 1 51 0 2 605 21 82 0 0 chr3L 2707045 2707094 -21836463 + AT_rich Low_complexity Low_complexity 1 49 0 2 605 23 0 0 0 chr3L 2708893 2708916 -21834641 + AT_rich Low_complexity Low_complexity 1 23 0 2 605 28 0 0 0 chr3L 2712205 2712233 -21831324 + AT_rich Low_complexity Low_complexity 1 28 0 2 605 186 143 0 0 chr3L 2712908 2712943 -21830614 + (A)n Simple_repeat Simple_repeat 1 35 0 2 605 21 0 0 0 chr3L 2718391 2718412 -21825145 + AT_rich Low_complexity Low_complexity 1 21 0 2 605 186 133 0 0 chr3L 2719141 2719171 -21824386 + (TTCTCC)n Simple_repeat Simple_repeat 3 32 0 2 605 198 0 0 0 chr3L 2719581 2719603 -21823954 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2 605 284 281 0 0 chr3L 2721067 2721149 -21822408 + (CTG)n Simple_repeat Simple_repeat 1 82 0 2 605 325 119 0 35 chr3L 2721608 2721695 -21821862 - ROO_I LTR Pao -7532 724 641 2 605 228 111 0 0 chr3L 2722043 2722079 -21821478 + (CTG)n Simple_repeat Simple_repeat 1 36 0 2 605 229 204 0 0 chr3L 2723415 2723459 -21820098 + (TGG)n Simple_repeat Simple_repeat 2 45 0 2 605 204 40 0 0 chr3L 2725190 2725215 -21818342 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 605 238 208 0 0 chr3L 2728810 2728858 -21814699 + (CTG)n Simple_repeat Simple_repeat 2 49 0 2 605 284 107 0 51 chr3L 2729049 2729108 -21814449 + (CTG)n Simple_repeat Simple_repeat 1 56 0 2 605 243 0 0 0 chr3L 2729896 2729923 -21813634 + (CTG)n Simple_repeat Simple_repeat 1 27 0 2 605 258 132 0 0 chr3L 2732365 2732418 -21811139 + (TG)n Simple_repeat Simple_repeat 1 53 0 2 605 223 229 0 76 chr3L 2732975 2733041 -21810516 + A-rich Low_complexity Low_complexity 1 61 0 2 605 314 210 0 0 chr3L 2735261 2735342 -21808215 - ROO_I LTR Pao -7529 727 647 2 605 23 0 0 0 chr3L 2736617 2736640 -21806917 + AT_rich Low_complexity Low_complexity 1 23 0 2 605 204 97 0 0 chr3L 2736959 2736990 -21806567 + (A)n Simple_repeat Simple_repeat 1 31 0 2 605 230 73 0 24 chr3L 2744780 2744822 -21798735 + (TA)n Simple_repeat Simple_repeat 1 41 0 2 605 180 0 0 0 chr3L 2748489 2748509 -21795048 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 2 605 201 158 0 0 chr3L 2748624 2748662 -21794895 + A-rich Low_complexity Low_complexity 1 38 0 2 605 188 86 0 28 chr3L 2748806 2748842 -21794715 + (TATAG)n Simple_repeat Simple_repeat 3 37 0 2 75 38522 3 0 0 chr3L 2751510 2755712 -21787845 + FW_DM LINE Jockey 492 4692 0 2 606 264 111 0 0 chr3L 2756083 2756128 -21787429 + (T)n Simple_repeat Simple_repeat 1 45 0 2 606 22 35 0 0 chr3L 2757819 2757848 -21785709 + AT_rich Low_complexity Low_complexity 1 29 0 2 606 21 0 0 0 chr3L 2759913 2759934 -21783623 + AT_rich Low_complexity Low_complexity 1 21 0 2 606 28 0 0 0 chr3L 2764008 2764036 -21779521 + AT_rich Low_complexity Low_complexity 1 28 0 2 606 203 171 0 0 chr3L 2765585 2765620 -21777937 + (TATG)n Simple_repeat Simple_repeat 2 36 0 2 606 239 263 0 26 chr3L 2766267 2766290 -21777267 + (TTG)n Simple_repeat Simple_repeat 3 25 0 2 606 189 0 0 0 chr3L 2766290 2766311 -21777246 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 606 239 263 0 26 chr3L 2766311 2766365 -21777192 + (TTG)n Simple_repeat Simple_repeat 1 53 0 2 606 22 0 0 0 chr3L 2772415 2772437 -21771120 + AT_rich Low_complexity Low_complexity 1 22 0 2 606 204 232 0 42 chr3L 2773892 2773964 -21769593 + A-rich Low_complexity Low_complexity 4 72 0 2 606 215 275 25 0 chr3L 2774088 2774168 -21769389 + (TTAAA)n Simple_repeat Simple_repeat 4 85 0 2 606 26 64 0 0 chr3L 2780634 2780681 -21762876 + AT_rich Low_complexity Low_complexity 1 47 0 2 606 30 27 0 0 chr3L 2786607 2786644 -21756913 + AT_rich Low_complexity Low_complexity 1 37 0 2 606 180 0 0 0 chr3L 2787141 2787161 -21756396 + (TG)n Simple_repeat Simple_repeat 2 21 0 2 606 522 83 0 0 chr3L 2789563 2789635 -21753922 + (CTG)n Simple_repeat Simple_repeat 1 72 0 2 606 201 175 0 0 chr3L 2793533 2793573 -21749984 + (CCG)n Simple_repeat Simple_repeat 3 42 0 2 606 254 113 0 88 chr3L 2793849 2793917 -21749640 - ROO_I LTR Pao -7556 700 639 2 606 213 108 0 0 chr3L 2794014 2794051 -21749506 + (CTG)n Simple_repeat Simple_repeat 3 39 0 2 606 183 80 0 0 chr3L 2794158 2794183 -21749374 + (CTG)n Simple_repeat Simple_repeat 3 27 0 2 606 213 121 0 0 chr3L 2794216 2794249 -21749308 + (CTG)n Simple_repeat Simple_repeat 3 35 0 2 606 185 108 0 26 chr3L 2794287 2794325 -21749232 + (CTG)n Simple_repeat Simple_repeat 3 39 0 2 606 336 178 0 0 chr3L 2794443 2794516 -21749041 + (TTG)n Simple_repeat Simple_repeat 1 73 0 2 606 294 95 0 0 chr3L 2794645 2794687 -21748870 + (CTG)n Simple_repeat Simple_repeat 3 44 0 2 606 180 0 0 0 chr3L 2796012 2796032 -21747525 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 606 350 206 0 30 chr3L 2796360 2796460 -21747097 - ROO_I LTR Pao -7517 739 643 2 606 324 83 0 0 chr3L 2796487 2796535 -21747022 + (CTG)n Simple_repeat Simple_repeat 3 50 0 2 606 27 62 0 0 chr3L 2799149 2799197 -21744360 + AT_rich Low_complexity Low_complexity 1 48 0 2 606 180 0 0 0 chr3L 2799307 2799327 -21744230 + (CATA)n Simple_repeat Simple_repeat 4 23 0 2 606 201 39 0 0 chr3L 2800800 2800826 -21742731 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 606 210 273 13 13 chr3L 2801704 2801782 -21741775 + T-rich Low_complexity Low_complexity 3 80 0 2 606 203 108 54 0 chr3L 2803222 2803259 -21740298 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 606 225 273 88 29 chr3L 2803832 2803934 -21739623 - DMRPR Unknown Unknown -42 243 136 2 606 25 0 0 0 chr3L 2805316 2805341 -21738216 + AT_rich Low_complexity Low_complexity 1 25 0 2 606 246 175 18 0 chr3L 2805505 2805562 -21737995 - ROO_I LTR Pao -7522 734 677 2 606 263 200 85 24 chr3L 2805515 2805597 -21737960 - TART LINE telomeric -8153 6324 6238 2 606 21 0 0 0 chr3L 2806301 2806322 -21737235 + AT_rich Low_complexity Low_complexity 1 21 0 2 606 226 325 0 0 chr3L 2808342 2808425 -21735132 + GA-rich Low_complexity Low_complexity 1 83 0 2 606 186 118 0 0 chr3L 2808560 2808594 -21734963 + (A)n Simple_repeat Simple_repeat 1 34 0 2 606 222 209 0 0 chr3L 2812993 2813036 -21730521 + GA-rich Low_complexity Low_complexity 2 44 0 2 606 21 36 0 0 chr3L 2815496 2815524 -21728033 + AT_rich Low_complexity Low_complexity 1 28 0 2 606 189 121 0 0 chr3L 2820707 2820740 -21722817 + (CTG)n Simple_repeat Simple_repeat 3 35 0 2 606 29 0 0 0 chr3L 2822642 2822671 -21720886 + AT_rich Low_complexity Low_complexity 1 29 0 2 606 203 284 15 0 chr3L 2823699 2823766 -21719791 + CT-rich Low_complexity Low_complexity 2 69 0 2 606 214 254 16 0 chr3L 2824366 2824429 -21719128 + (CTG)n Simple_repeat Simple_repeat 3 66 0 2 606 211 209 0 0 chr3L 2827409 2827452 -21716105 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 606 200 189 0 0 chr3L 2828436 2828473 -21715084 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 606 207 0 0 0 chr3L 2828833 2828856 -21714701 + (CA)n Simple_repeat Simple_repeat 2 24 0 2 606 24 32 0 0 chr3L 2830146 2830177 -21713380 + AT_rich Low_complexity Low_complexity 1 31 0 2 606 186 118 0 0 chr3L 2830350 2830384 -21713173 + (CAAT)n Simple_repeat Simple_repeat 3 36 0 2 606 23 0 0 0 chr3L 2832128 2832151 -21711406 + AT_rich Low_complexity Low_complexity 1 23 0 2 606 21 36 0 0 chr3L 2832327 2832355 -21711202 + AT_rich Low_complexity Low_complexity 1 28 0 2 606 189 121 0 0 chr3L 2832406 2832439 -21711118 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 606 186 143 0 0 chr3L 2833306 2833341 -21710216 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 606 186 133 0 0 chr3L 2834969 2834999 -21708558 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2 606 25 0 0 0 chr3L 2835068 2835093 -21708464 + AT_rich Low_complexity Low_complexity 1 25 0 2 606 31 58 0 0 chr3L 2835144 2835196 -21708361 + AT_rich Low_complexity Low_complexity 1 52 0 2 606 50 18 0 0 chr3L 2835246 2835303 -21708254 + AT_rich Low_complexity Low_complexity 1 57 0 2 606 21 0 0 0 chr3L 2836436 2836457 -21707100 + AT_rich Low_complexity Low_complexity 1 21 0 2 606 312 108 40 26 chr3L 2837413 2837489 -21706068 + T-rich Low_complexity Low_complexity 4 80 0 2 606 186 71 0 0 chr3L 2837701 2837729 -21705828 + (GGAAA)n Simple_repeat Simple_repeat 3 30 0 2 606 22 0 0 0 chr3L 2838454 2838476 -21705081 + AT_rich Low_complexity Low_complexity 1 22 0 2 606 204 135 0 0 chr3L 2838628 2838665 -21704892 + (TTG)n Simple_repeat Simple_repeat 1 37 0 2 606 273 276 0 0 chr3L 2839585 2839661 -21703896 + (TTG)n Simple_repeat Simple_repeat 3 78 0 2 606 24 32 0 0 chr3L 2841312 2841343 -21702214 + AT_rich Low_complexity Low_complexity 1 31 0 2 606 21 36 0 0 chr3L 2842401 2842429 -21701128 + AT_rich Low_complexity Low_complexity 1 28 0 2 606 216 111 0 0 chr3L 2842507 2842543 -21701014 + (TTTTTA)n Simple_repeat Simple_repeat 4 39 0 2 606 31 0 0 0 chr3L 2842603 2842634 -21700923 + AT_rich Low_complexity Low_complexity 1 31 0 2 606 213 39 0 0 chr3L 2843406 2843432 -21700125 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2 606 228 67 0 0 chr3L 2844472 2844502 -21699055 + (GA)n Simple_repeat Simple_repeat 2 31 0 2 606 210 91 0 0 chr3L 2845094 2845127 -21698430 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 606 23 0 0 0 chr3L 2846650 2846673 -21696884 + AT_rich Low_complexity Low_complexity 1 23 0 2 606 217 226 19 0 chr3L 2847548 2847601 -21695956 + (CTG)n Simple_repeat Simple_repeat 3 56 0 2 606 225 191 0 42 chr3L 2847777 2847848 -21695709 - ROO_I LTR Pao -7524 732 665 2 606 26 30 0 0 chr3L 2849051 2849084 -21694473 + AT_rich Low_complexity Low_complexity 1 33 0 2 606 22 0 0 0 chr3L 2851718 2851740 -21691817 + AT_rich Low_complexity Low_complexity 1 22 0 2 606 226 238 32 0 chr3L 2857824 2857887 -21685670 + (CAG)n Simple_repeat Simple_repeat 3 67 0 2 606 26 0 0 0 chr3L 2858299 2858325 -21685232 + AT_rich Low_complexity Low_complexity 1 26 0 2 606 180 111 0 0 chr3L 2859586 2859613 -21683944 + (TTG)n Simple_repeat Simple_repeat 3 29 0 2 606 28 0 0 0 chr3L 2864911 2864939 -21678618 + AT_rich Low_complexity Low_complexity 1 28 0 2 606 239 255 0 0 chr3L 2865521 2865572 -21677985 + (CAT)n Simple_repeat Simple_repeat 1 51 0 2 606 226 279 13 0 chr3L 2867759 2867838 -21675719 + (TG)n Simple_repeat Simple_repeat 1 80 0 2 606 261 243 0 51 chr3L 2869628 2869745 -21673812 + (TGG)n Simple_repeat Simple_repeat 3 113 0 2 606 285 197 0 0 chr3L 2871251 2871312 -21672245 + (TTG)n Simple_repeat Simple_repeat 1 61 0 2 606 356 165 18 55 chr3L 2871324 2871433 -21672124 - ROO_I LTR Pao -7513 743 639 2 606 228 197 0 40 chr3L 2871433 2871507 -21672050 - ROO_I LTR Pao -7549 707 637 2 606 27 0 0 0 chr3L 2872981 2873008 -21670549 + AT_rich Low_complexity Low_complexity 1 27 0 2 606 231 219 0 15 chr3L 2873147 2873212 -21670345 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 606 21 36 0 0 chr3L 2873292 2873320 -21670237 + AT_rich Low_complexity Low_complexity 1 28 0 2 606 212 192 0 19 chr3L 2873463 2873516 -21670041 + (ATG)n Simple_repeat Simple_repeat 1 52 0 2 606 183 80 0 0 chr3L 2875358 2875383 -21668174 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 606 21 36 0 0 chr3L 2877898 2877926 -21665631 + AT_rich Low_complexity Low_complexity 1 28 0 2 606 207 69 0 0 chr3L 2879640 2879669 -21663888 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 606 228 206 48 0 chr3L 2880039 2880102 -21663455 + (CTG)n Simple_repeat Simple_repeat 1 66 0 2 606 189 0 0 0 chr3L 2880955 2880976 -21662581 + (A)n Simple_repeat Simple_repeat 1 21 0 2 606 209 214 0 67 chr3L 2881755 2881815 -21661742 + (CTG)n Simple_repeat Simple_repeat 3 58 0 2 606 180 125 0 0 chr3L 2881949 2881981 -21661576 + (TTG)n Simple_repeat Simple_repeat 1 32 0 2 607 26 0 0 0 chr3L 2884645 2884671 -21658886 + AT_rich Low_complexity Low_complexity 1 26 0 2 607 22 70 0 0 chr3L 2885660 2885703 -21657854 + AT_rich Low_complexity Low_complexity 1 43 0 2 607 27 87 0 0 chr3L 2886953 2887022 -21656535 + AT_rich Low_complexity Low_complexity 1 69 0 2 607 22 0 0 0 chr3L 2887105 2887127 -21656430 + AT_rich Low_complexity Low_complexity 1 22 0 2 607 25 65 0 0 chr3L 2890064 2890110 -21653447 + AT_rich Low_complexity Low_complexity 1 46 0 2 607 212 200 18 0 chr3L 2890444 2890499 -21653058 + (TAA)n Simple_repeat Simple_repeat 2 57 0 2 607 21 36 0 0 chr3L 2891548 2891576 -21651981 + AT_rich Low_complexity Low_complexity 1 28 0 2 607 24 53 0 0 chr3L 2892997 2893035 -21650522 + AT_rich Low_complexity Low_complexity 1 38 0 2 607 26 50 0 0 chr3L 2894127 2894167 -21649390 + AT_rich Low_complexity Low_complexity 1 40 0 2 607 201 121 0 0 chr3L 2895917 2895950 -21647607 + (CTCTG)n Simple_repeat Simple_repeat 2 34 0 2 607 198 0 0 0 chr3L 2903109 2903131 -21640426 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 607 27 0 0 0 chr3L 2909397 2909424 -21634133 + AT_rich Low_complexity Low_complexity 1 27 0 2 607 206 154 0 25 chr3L 2913860 2913900 -21629657 + (CA)n Simple_repeat Simple_repeat 2 40 0 2 607 23 54 0 0 chr3L 2914056 2914093 -21629464 + AT_rich Low_complexity Low_complexity 1 37 0 2 607 21 36 0 0 chr3L 2919452 2919480 -21624077 + AT_rich Low_complexity Low_complexity 1 28 0 2 607 186 43 0 0 chr3L 2922029 2922052 -21621505 + (A)n Simple_repeat Simple_repeat 1 23 0 2 607 22 70 0 0 chr3L 2923340 2923383 -21620174 + AT_rich Low_complexity Low_complexity 1 43 0 2 607 247 142 0 154 chr3L 2924206 2924323 -21619234 + ROO_I LTR Pao 640 738 -7518 2 607 24 32 0 0 chr3L 2925615 2925646 -21617911 + AT_rich Low_complexity Low_complexity 1 31 0 2 607 25 0 0 0 chr3L 2927136 2927161 -21616396 + AT_rich Low_complexity Low_complexity 1 25 0 2 607 28 29 0 0 chr3L 2927446 2927481 -21616076 + AT_rich Low_complexity Low_complexity 1 35 0 2 607 3790 5 0 0 chr3L 2927893 2928310 -21615247 - TIRANT_LTR LTR Gypsy 0 417 1 2 607 66311 1 0 1 chr3L 2928310 2935696 -21607861 - TIRANT_I LTR Gypsy 0 7692 1 2 607 3790 5 0 0 chr3L 2935696 2936113 -21607444 - TIRANT_LTR LTR Gypsy 0 417 1 2 607 237 228 18 0 chr3L 2936475 2936532 -21607025 + (CA)n Simple_repeat Simple_repeat 2 59 0 2 607 22 56 0 0 chr3L 2937253 2937289 -21606268 + AT_rich Low_complexity Low_complexity 1 36 0 2 607 229 182 0 0 chr3L 2939010 2939054 -21604503 + CT-rich Low_complexity Low_complexity 2 45 0 2 607 23 33 0 0 chr3L 2943618 2943648 -21599909 + AT_rich Low_complexity Low_complexity 1 30 0 2 607 210 196 18 18 chr3L 2944364 2944421 -21599136 + (CA)n Simple_repeat Simple_repeat 2 58 0 2 607 214 250 0 15 chr3L 2944623 2944688 -21598869 + (CA)n Simple_repeat Simple_repeat 1 64 0 2 607 22 0 0 0 chr3L 2946886 2946908 -21596649 + AT_rich Low_complexity Low_complexity 1 22 0 2 607 189 107 0 0 chr3L 2948597 2948625 -21594932 + (CAG)n Simple_repeat Simple_repeat 3 30 0 2 607 25 31 0 0 chr3L 2949027 2949059 -21594498 + AT_rich Low_complexity Low_complexity 1 32 0 2 607 246 125 0 0 chr3L 2952883 2952931 -21590626 + (TTTCG)n Simple_repeat Simple_repeat 3 50 0 2 607 27 29 0 0 chr3L 2953406 2953440 -21590117 + AT_rich Low_complexity Low_complexity 1 34 0 2 607 225 0 0 0 chr3L 2957618 2957643 -21585914 + (CA)n Simple_repeat Simple_repeat 2 26 0 2 607 203 247 22 22 chr3L 2958652 2958743 -21584814 + (TTAG)n Simple_repeat Simple_repeat 3 93 0 2 607 234 62 0 0 chr3L 2959050 2959082 -21584475 + (CTCA)n Simple_repeat Simple_repeat 2 33 0 2 607 22 0 0 0 chr3L 2959633 2959655 -21583902 + AT_rich Low_complexity Low_complexity 1 22 0 2 607 23 33 0 0 chr3L 2962515 2962545 -21581012 + AT_rich Low_complexity Low_complexity 1 30 0 2 607 26 30 0 0 chr3L 2963730 2963763 -21579794 + AT_rich Low_complexity Low_complexity 1 33 0 2 607 3013 44 5 30 chr3L 2966753 2966793 -21576764 + MDG1_LTR LTR Gypsy 55 87 -355 2 607 423 100 0 0 chr3L 2966793 2966863 -21576694 + (TAA)n Simple_repeat Simple_repeat 3 72 0 2 607 3013 44 5 30 chr3L 2966863 2967220 -21576337 + MDG1_LTR LTR Gypsy 88 442 0 2 607 57286 7 19 2 chr3L 2967220 2973713 -21569844 + MDG1_I LTR Gypsy 1 6799 -98 2 607 423 100 0 0 chr3L 2973717 2973787 -21569770 + (TAA)n Simple_repeat Simple_repeat 3 72 0 2 607 3018 36 0 3 chr3L 2973787 2974144 -21569413 + MDG1_LTR LTR Gypsy 87 442 0 2 607 207 170 0 0 chr3L 2974638 2974685 -21568872 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 607 21 0 0 0 chr3L 2977861 2977882 -21565675 + AT_rich Low_complexity Low_complexity 1 21 0 2 607 24 0 0 0 chr3L 2979725 2979749 -21563808 + AT_rich Low_complexity Low_complexity 1 24 0 2 607 204 67 0 0 chr3L 2988387 2988417 -21555140 + (TGG)n Simple_repeat Simple_repeat 3 32 0 2 607 22 0 0 0 chr3L 2988985 2989007 -21554550 + AT_rich Low_complexity Low_complexity 1 22 0 2 607 218 125 25 0 chr3L 2989335 2989375 -21554182 + (CATA)n Simple_repeat Simple_repeat 4 44 0 2 607 189 0 0 0 chr3L 2997110 2997131 -21546426 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2 607 27 29 0 0 chr3L 3001065 3001099 -21542458 + AT_rich Low_complexity Low_complexity 1 34 0 2 607 32 0 0 0 chr3L 3001954 3001986 -21541571 + AT_rich Low_complexity Low_complexity 1 32 0 2 607 225 267 0 0 chr3L 3004079 3004124 -21539433 - DMRT1C LINE R1 -1730 3713 3669 2 607 21 0 0 0 chr3L 3004226 3004247 -21539310 + AT_rich Low_complexity Low_complexity 1 21 0 2 607 21 36 0 0 chr3L 3004704 3004732 -21538825 + AT_rich Low_complexity Low_complexity 1 28 0 2 607 26 30 0 0 chr3L 3007000 3007033 -21536524 + AT_rich Low_complexity Low_complexity 1 33 0 2 607 25 0 0 0 chr3L 3007701 3007726 -21535831 + AT_rich Low_complexity Low_complexity 1 25 0 2 607 22 35 0 0 chr3L 3007757 3007786 -21535771 + AT_rich Low_complexity Low_complexity 1 29 0 2 607 21 0 0 0 chr3L 3010579 3010600 -21532957 + AT_rich Low_complexity Low_complexity 1 21 0 2 608 211 194 0 0 chr3L 3014817 3014853 -21528704 + (CGA)n Simple_repeat Simple_repeat 1 36 0 2 608 242 290 10 31 chr3L 3021875 3021971 -21521586 + T-rich Low_complexity Low_complexity 5 98 0 2 608 23 0 0 0 chr3L 3022333 3022356 -21521201 + AT_rich Low_complexity Low_complexity 1 23 0 2 608 218 179 0 0 chr3L 3026017 3026056 -21517501 + CT-rich Low_complexity Low_complexity 1 39 0 2 608 198 0 0 0 chr3L 3027250 3027272 -21516285 + (TTAAA)n Simple_repeat Simple_repeat 2 23 0 2 608 23 33 0 0 chr3L 3030233 3030263 -21513294 + AT_rich Low_complexity Low_complexity 1 30 0 2 608 21 0 0 0 chr3L 3031721 3031742 -21511815 + AT_rich Low_complexity Low_complexity 1 21 0 2 608 235 233 27 0 chr3L 3035426 3035499 -21508058 + (TG)n Simple_repeat Simple_repeat 1 75 0 2 608 186 103 0 0 chr3L 3037369 3037398 -21506159 + (CACTT)n Simple_repeat Simple_repeat 5 33 0 2 608 277 240 38 19 chr3L 3037830 3037936 -21505621 + ROO_I LTR Pao 642 749 -7507 2 608 288 239 0 33 chr3L 3038238 3038329 -21505228 + ROO_I LTR Pao 656 743 -7513 2 608 12550 90 3 2 chr3L 3040377 3042111 -21501446 - S_DM DNA Tc1 0 1736 1 2 608 21 57 0 0 chr3L 3050204 3050239 -21493318 + AT_rich Low_complexity Low_complexity 1 35 0 2 608 180 0 0 0 chr3L 3051778 3051798 -21491759 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 608 1377 60 16 0 chr3L 3051801 3051984 -21491573 + POGON1 DNA Pogo 1 186 0 2 608 209 200 0 0 chr3L 3060357 3060397 -21483160 + (CAGA)n Simple_repeat Simple_repeat 4 43 0 2 608 3799 5 0 0 chr3L 3061338 3061755 -21481802 + TIRANT_LTR LTR Gypsy 1 417 0 2 608 71179 0 0 0 chr3L 3061755 3069447 -21474110 + TIRANT_I LTR Gypsy 1 7692 0 2 608 3799 5 0 0 chr3L 3069447 3069864 -21473693 + TIRANT_LTR LTR Gypsy 1 417 0 2 608 204 208 0 0 chr3L 3070396 3070444 -21473113 + GA-rich Low_complexity Low_complexity 2 49 0 2 608 22 35 0 0 chr3L 3070979 3071008 -21472549 + AT_rich Low_complexity Low_complexity 1 29 0 2 608 27 49 0 0 chr3L 3071640 3071681 -21471876 + AT_rich Low_complexity Low_complexity 1 41 0 2 608 207 260 25 38 chr3L 3071794 3071874 -21471683 + CT-rich Low_complexity Low_complexity 6 84 0 2 608 202 179 35 35 chr3L 3073342 3073400 -21470157 + (CGAAA)n Simple_repeat Simple_repeat 3 60 0 2 608 22 35 0 0 chr3L 3076483 3076512 -21467045 + AT_rich Low_complexity Low_complexity 1 29 0 2 608 21 0 0 0 chr3L 3080281 3080302 -21463255 + AT_rich Low_complexity Low_complexity 1 21 0 2 608 234 91 0 0 chr3L 3080742 3080775 -21462782 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 2 608 222 191 0 0 chr3L 3081883 3081930 -21461627 + (TATG)n Simple_repeat Simple_repeat 2 48 0 2 608 23 33 0 0 chr3L 3084089 3084119 -21459438 + AT_rich Low_complexity Low_complexity 1 30 0 2 608 228 137 0 0 chr3L 3085324 3085375 -21458182 + (CAG)n Simple_repeat Simple_repeat 1 51 0 2 608 360 268 0 40 chr3L 3088634 3088782 -21454775 + A-rich Low_complexity Low_complexity 1 142 0 2 608 31 0 0 0 chr3L 3090407 3090438 -21453119 + AT_rich Low_complexity Low_complexity 1 31 0 2 608 27 0 0 0 chr3L 3090922 3090949 -21452608 + AT_rich Low_complexity Low_complexity 1 27 0 2 608 24 67 0 0 chr3L 3094892 3094937 -21448620 + AT_rich Low_complexity Low_complexity 1 45 0 2 608 21 0 0 0 chr3L 3099760 3099781 -21443776 + AT_rich Low_complexity Low_complexity 1 21 0 2 608 200 94 31 0 chr3L 3100789 3100821 -21442736 + (CAGCG)n Simple_repeat Simple_repeat 3 35 0 2 608 25 0 0 0 chr3L 3106104 3106129 -21437428 + AT_rich Low_complexity Low_complexity 1 25 0 2 608 226 159 0 22 chr3L 3106746 3106791 -21436766 + (GATTG)n Simple_repeat Simple_repeat 1 44 0 2 608 28 0 0 0 chr3L 3122516 3122544 -21421013 + AT_rich Low_complexity Low_complexity 1 28 0 2 608 22 0 0 0 chr3L 3123990 3124012 -21419545 + AT_rich Low_complexity Low_complexity 1 22 0 2 608 264 100 0 0 chr3L 3127418 3127458 -21416099 + (TA)n Simple_repeat Simple_repeat 1 40 0 2 608 192 167 0 0 chr3L 3128508 3128556 -21415001 + (TA)n Simple_repeat Simple_repeat 2 49 0 2 608 36 0 0 0 chr3L 3134431 3134467 -21409090 + AT_rich Low_complexity Low_complexity 1 36 0 2 608 26 93 0 0 chr3L 3134944 3135019 -21408538 + AT_rich Low_complexity Low_complexity 1 75 0 2 608 195 100 0 0 chr3L 3138857 3138887 -21404670 + (GAAAA)n Simple_repeat Simple_repeat 2 31 0 2 608 214 189 0 75 chr3L 3139298 3139378 -21404179 + T-rich Low_complexity Low_complexity 2 75 0 2 608 21 36 0 0 chr3L 3140200 3140228 -21403329 + AT_rich Low_complexity Low_complexity 1 28 0 2 608 207 0 0 0 chr3L 3140383 3140406 -21403151 + (TTTG)n Simple_repeat Simple_repeat 1 23 0 2 608 32 26 0 0 chr3L 3143655 3143694 -21399863 + AT_rich Low_complexity Low_complexity 1 39 0 2 608 21 57 0 0 chr3L 3143746 3143781 -21399776 + AT_rich Low_complexity Low_complexity 1 35 0 2 608 23 33 0 0 chr3L 3143849 3143879 -21399678 + AT_rich Low_complexity Low_complexity 1 30 0 2 609 239 224 0 0 chr3L 3149862 3149911 -21393646 + GA-rich Low_complexity Low_complexity 2 50 0 2 609 316 235 0 0 chr3L 3150594 3150696 -21392861 + ROO_I LTR Pao 640 741 -7515 2 609 225 367 0 11 chr3L 3152525 3152616 -21390941 + (CGG)n Simple_repeat Simple_repeat 2 91 0 2 609 244 181 42 0 chr3L 3152623 3152695 -21390862 + ROO_I LTR Pao 640 714 -7542 2 609 180 77 0 0 chr3L 3153904 3153930 -21389627 + (AGCTG)n Simple_repeat Simple_repeat 3 28 0 2 609 225 108 0 0 chr3L 3154114 3154151 -21389406 + (TA)n Simple_repeat Simple_repeat 1 37 0 2 609 21 0 0 0 chr3L 3154186 3154207 -21389350 + AT_rich Low_complexity Low_complexity 1 21 0 2 609 205 258 0 16 chr3L 3154756 3154819 -21388738 + (TATATG)n Simple_repeat Simple_repeat 4 65 0 2 609 27 0 0 0 chr3L 3155578 3155605 -21387952 + AT_rich Low_complexity Low_complexity 1 27 0 2 609 22 0 0 0 chr3L 3159729 3159751 -21383806 + AT_rich Low_complexity Low_complexity 1 22 0 2 609 22 0 0 0 chr3L 3159763 3159785 -21383772 + AT_rich Low_complexity Low_complexity 1 22 0 2 609 24 85 0 0 chr3L 3163797 3163856 -21379701 + AT_rich Low_complexity Low_complexity 1 59 0 2 609 25 31 0 0 chr3L 3169196 3169228 -21374329 + AT_rich Low_complexity Low_complexity 1 32 0 2 609 21 0 0 0 chr3L 3183611 3183632 -21359925 + AT_rich Low_complexity Low_complexity 1 21 0 2 609 212 357 0 0 chr3L 3185739 3185865 -21357692 + (CCA)n Simple_repeat Simple_repeat 3 128 0 2 609 230 282 0 0 chr3L 3186138 3186209 -21357348 + (CCA)n Simple_repeat Simple_repeat 3 73 0 2 609 25 0 0 0 chr3L 3186928 3186953 -21356604 + AT_rich Low_complexity Low_complexity 1 25 0 2 609 21 0 0 0 chr3L 3192815 3192836 -21350721 + AT_rich Low_complexity Low_complexity 1 21 0 2 609 32 26 0 0 chr3L 3194216 3194255 -21349302 + AT_rich Low_complexity Low_complexity 1 39 0 2 609 212 371 0 0 chr3L 3195128 3195287 -21348270 + GA-rich Low_complexity Low_complexity 2 160 0 2 609 229 178 67 0 chr3L 3200579 3200624 -21342933 + Gypsy9_LTR LTR Gypsy 44 91 -245 2 609 22 0 0 0 chr3L 3203251 3203273 -21340284 + AT_rich Low_complexity Low_complexity 1 22 0 2 609 24 0 0 0 chr3L 3205479 3205503 -21338054 + AT_rich Low_complexity Low_complexity 1 24 0 2 609 21 57 0 0 chr3L 3224623 3224658 -21318899 + AT_rich Low_complexity Low_complexity 1 35 0 2 609 258 256 0 53 chr3L 3225913 3226008 -21317549 + A-rich Low_complexity Low_complexity 2 91 0 2 609 242 295 0 0 chr3L 3226240 3226318 -21317239 + (CTCG)n Simple_repeat Simple_repeat 4 81 0 2 609 200 138 15 44 chr3L 3226332 3226400 -21317157 + (TG)n Simple_repeat Simple_repeat 2 67 0 2 609 232 312 8 0 chr3L 3227002 3227163 -21316394 + (CAG)n Simple_repeat Simple_repeat 1 162 0 2 609 180 111 0 0 chr3L 3227211 3227238 -21316319 + (CAG)n Simple_repeat Simple_repeat 1 27 0 2 609 249 231 0 37 chr3L 3229503 3229584 -21313973 + (CAG)n Simple_repeat Simple_repeat 1 78 0 2 609 306 132 0 0 chr3L 3230424 3230477 -21313080 + (CAG)n Simple_repeat Simple_repeat 1 53 0 2 609 28 48 0 0 chr3L 3232944 3232986 -21310571 + AT_rich Low_complexity Low_complexity 1 42 0 2 609 180 77 0 0 chr3L 3234417 3234443 -21309114 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 2 609 218 56 28 0 chr3L 3235829 3235865 -21307692 + (CAA)n Simple_repeat Simple_repeat 2 38 0 2 609 189 74 0 0 chr3L 3235942 3235969 -21307588 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 609 269 205 12 35 chr3L 3236136 3236222 -21307335 + A-rich Low_complexity Low_complexity 1 84 0 2 609 63 14 0 0 chr3L 3240980 3241050 -21302507 + AT_rich Low_complexity Low_complexity 1 70 0 2 609 250 194 0 16 chr3L 3246476 3246539 -21297018 + (TAAA)n Simple_repeat Simple_repeat 2 63 0 2 609 220 266 0 12 chr3L 3246646 3246726 -21296831 + CT-rich Low_complexity Low_complexity 1 79 0 2 609 189 171 0 0 chr3L 3249466 3249501 -21294056 + (TA)n Simple_repeat Simple_repeat 2 36 0 2 609 25 0 0 0 chr3L 3252116 3252141 -21291416 + AT_rich Low_complexity Low_complexity 1 25 0 2 609 207 0 0 0 chr3L 3254319 3254342 -21289215 + (TG)n Simple_repeat Simple_repeat 1 23 0 2 609 306 87 0 0 chr3L 3258293 3258339 -21285218 + (TA)n Simple_repeat Simple_repeat 1 46 0 2 609 195 114 0 0 chr3L 3261179 3261214 -21282343 + (TAAAAA)n Simple_repeat Simple_repeat 3 37 0 2 609 21 0 0 0 chr3L 3262636 3262657 -21280900 + AT_rich Low_complexity Low_complexity 1 21 0 2 609 198 0 0 0 chr3L 3267306 3267328 -21276229 + (TC)n Simple_repeat Simple_repeat 1 22 0 2 609 24 0 0 0 chr3L 3268587 3268611 -21274946 + AT_rich Low_complexity Low_complexity 1 24 0 2 609 28 29 0 0 chr3L 3268951 3268986 -21274571 + AT_rich Low_complexity Low_complexity 1 35 0 2 609 201 74 0 0 chr3L 3270080 3270107 -21273450 + (GA)n Simple_repeat Simple_repeat 2 28 0 2 609 253 260 14 0 chr3L 3274193 3274266 -21269291 + (CGA)n Simple_repeat Simple_repeat 1 74 0 2 609 25 51 0 0 chr3L 3275427 3275466 -21268091 + AT_rich Low_complexity Low_complexity 1 39 0 2 610 29 47 0 0 chr3L 3276965 3277008 -21266549 + AT_rich Low_complexity Low_complexity 1 43 0 2 610 25 0 0 0 chr3L 3279757 3279782 -21263775 + AT_rich Low_complexity Low_complexity 1 25 0 2 610 3802 5 0 0 chr3L 3281500 3281930 -21261627 + DOC LINE Jockey 4296 4725 0 2 610 27 0 0 0 chr3L 3285078 3285105 -21258452 + AT_rich Low_complexity Low_complexity 1 27 0 2 610 305 263 0 0 chr3L 3287245 3287425 -21256132 + GA-rich Low_complexity Low_complexity 1 180 0 2 610 25 31 0 0 chr3L 3288458 3288490 -21255067 + AT_rich Low_complexity Low_complexity 1 32 0 2 610 189 0 0 0 chr3L 3288993 3289014 -21254543 + (GAA)n Simple_repeat Simple_repeat 2 22 0 2 610 222 191 0 0 chr3L 3295713 3295755 -21247802 + (ATTCG)n Simple_repeat Simple_repeat 3 44 0 2 610 21 0 0 0 chr3L 3298834 3298855 -21244702 + AT_rich Low_complexity Low_complexity 1 21 0 2 610 31 26 0 0 chr3L 3298968 3299006 -21244551 + AT_rich Low_complexity Low_complexity 1 38 0 2 610 23 0 0 0 chr3L 3303740 3303763 -21239794 + AT_rich Low_complexity Low_complexity 1 23 0 2 610 207 69 0 0 chr3L 3308104 3308133 -21235424 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 610 25 0 0 0 chr3L 3309379 3309404 -21234153 + AT_rich Low_complexity Low_complexity 1 25 0 2 610 26 0 0 0 chr3L 3317111 3317137 -21226420 + AT_rich Low_complexity Low_complexity 1 26 0 2 610 224 260 0 0 chr3L 3321170 3321247 -21222310 + (CAG)n Simple_repeat Simple_repeat 1 77 0 2 610 227 171 0 0 chr3L 3321185 3321226 -21222331 + (CCA)n Simple_repeat Simple_repeat 1 41 0 2 610 30 0 0 0 chr3L 3322579 3322609 -21220948 + AT_rich Low_complexity Low_complexity 1 30 0 2 610 238 308 0 0 chr3L 3330330 3330421 -21213136 + (CAG)n Simple_repeat Simple_repeat 1 91 0 2 610 22 0 0 0 chr3L 3335482 3335504 -21208053 + AT_rich Low_complexity Low_complexity 1 22 0 2 610 220 174 0 42 chr3L 3337445 3337493 -21206064 + CT-rich Low_complexity Low_complexity 3 48 0 2 610 22 0 0 0 chr3L 3340915 3340937 -21202620 + AT_rich Low_complexity Low_complexity 1 22 0 2 610 24 0 0 0 chr3L 3343294 3343318 -21200239 + AT_rich Low_complexity Low_complexity 1 24 0 2 610 194 33 0 62 chr3L 3352757 3352789 -21190768 + (CATTT)n Simple_repeat Simple_repeat 1 30 0 2 610 21 36 0 0 chr3L 3353119 3353147 -21190410 + AT_rich Low_complexity Low_complexity 1 28 0 2 610 210 167 0 0 chr3L 3365957 3365993 -21177564 + (CAA)n Simple_repeat Simple_repeat 1 36 0 2 610 21 36 0 0 chr3L 3367991 3368019 -21175538 + AT_rich Low_complexity Low_complexity 1 28 0 2 610 22 0 0 0 chr3L 3368223 3368245 -21175312 + AT_rich Low_complexity Low_complexity 1 22 0 2 610 26 0 0 0 chr3L 3368870 3368896 -21174661 + AT_rich Low_complexity Low_complexity 1 26 0 2 610 188 34 0 33 chr3L 3371171 3371201 -21172356 + (TTG)n Simple_repeat Simple_repeat 1 29 0 2 610 27 0 0 0 chr3L 3377664 3377691 -21165866 + AT_rich Low_complexity Low_complexity 1 27 0 2 610 24 0 0 0 chr3L 3379829 3379853 -21163704 + AT_rich Low_complexity Low_complexity 1 24 0 2 610 24 0 0 0 chr3L 3382120 3382144 -21161413 + AT_rich Low_complexity Low_complexity 1 24 0 2 610 225 0 0 0 chr3L 3382353 3382378 -21161179 + (CAA)n Simple_repeat Simple_repeat 1 25 0 2 610 24 32 0 0 chr3L 3384743 3384774 -21158783 + AT_rich Low_complexity Low_complexity 1 31 0 2 610 200 176 0 0 chr3L 3386849 3386883 -21156674 + (CCG)n Simple_repeat Simple_repeat 1 34 0 2 610 183 114 0 0 chr3L 3386896 3386931 -21156626 + (TTTTA)n Simple_repeat Simple_repeat 5 39 0 2 610 366 61 0 0 chr3L 3387004 3387053 -21156504 + (GTATG)n Simple_repeat Simple_repeat 5 53 0 2 610 378 147 0 0 chr3L 3387760 3387828 -21155729 + (CAA)n Simple_repeat Simple_repeat 3 70 0 2 610 183 100 0 0 chr3L 3388054 3388084 -21155473 + (T)n Simple_repeat Simple_repeat 1 30 0 2 610 210 240 0 0 chr3L 3391363 3391413 -21152144 + (ATG)n Simple_repeat Simple_repeat 2 51 0 2 610 307 206 10 30 chr3L 3393904 3394004 -21149553 - ROO_I LTR Pao -7513 743 646 2 610 306 138 0 0 chr3L 3394121 3394179 -21149378 + (TTG)n Simple_repeat Simple_repeat 2 59 0 2 610 596 191 0 6 chr3L 3394324 3394498 -21149059 + (CAA)n Simple_repeat Simple_repeat 1 173 0 2 610 244 204 0 0 chr3L 3397736 3397785 -21145772 + GA-rich Low_complexity Low_complexity 3 51 0 2 610 208 246 16 0 chr3L 3399408 3399469 -21144088 + (CTA)n Simple_repeat Simple_repeat 1 62 0 2 610 211 229 0 20 chr3L 3399918 3399967 -21143590 + (CATA)n Simple_repeat Simple_repeat 4 51 0 2 610 22 56 0 0 chr3L 3401140 3401176 -21142381 + AT_rich Low_complexity Low_complexity 1 36 0 2 610 229 209 14 29 chr3L 3401583 3401652 -21141905 + (TA)n Simple_repeat Simple_repeat 1 68 0 2 610 30 45 0 0 chr3L 3402725 3402769 -21140788 + AT_rich Low_complexity Low_complexity 1 44 0 2 610 188 67 33 0 chr3L 3402796 3402826 -21140731 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2 610 426 136 0 0 chr3L 3403922 3404003 -21139554 + (CTG)n Simple_repeat Simple_repeat 3 83 0 2 610 276 111 0 0 chr3L 3404239 3404284 -21139273 + (TTG)n Simple_repeat Simple_repeat 2 46 0 2 610 195 69 0 0 chr3L 3405480 3405509 -21138048 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2 610 195 114 0 0 chr3L 3405676 3405711 -21137846 + (T)n Simple_repeat Simple_repeat 1 35 0 2 610 26 74 0 0 chr3L 3407309 3407363 -21136194 + AT_rich Low_complexity Low_complexity 1 54 0 2 610 219 143 48 0 chr3L 3407798 3407840 -21135717 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 2 611 291 85 0 0 chr3L 3408967 3409014 -21134543 + (CAG)n Simple_repeat Simple_repeat 3 49 0 2 611 191 62 0 59 chr3L 3409733 3409767 -21133790 + (GTCTG)n Simple_repeat Simple_repeat 2 33 0 2 611 226 319 0 0 chr3L 3411609 3411722 -21131835 + (CA)n Simple_repeat Simple_repeat 2 114 0 2 611 22 0 0 0 chr3L 3412325 3412347 -21131210 + AT_rich Low_complexity Low_complexity 1 22 0 2 611 221 143 0 39 chr3L 3413015 3413066 -21130491 + (CAT)n Simple_repeat Simple_repeat 1 49 0 2 611 30 27 0 0 chr3L 3413855 3413892 -21129665 + AT_rich Low_complexity Low_complexity 1 37 0 2 611 246 148 0 0 chr3L 3413976 3414030 -21129527 + (TTTTTG)n Simple_repeat Simple_repeat 4 57 0 2 611 231 146 0 0 chr3L 3414823 3414864 -21128693 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 2 611 242 188 43 0 chr3L 3415803 3415872 -21127685 + (CGAAT)n Simple_repeat Simple_repeat 4 75 0 2 611 24 32 0 0 chr3L 3416149 3416180 -21127377 + AT_rich Low_complexity Low_complexity 1 31 0 2 611 21 0 0 0 chr3L 3416219 3416240 -21127317 + AT_rich Low_complexity Low_complexity 1 21 0 2 611 29 0 0 0 chr3L 3416341 3416370 -21127187 + AT_rich Low_complexity Low_complexity 1 29 0 2 611 204 250 15 15 chr3L 3417316 3417381 -21126176 + (TG)n Simple_repeat Simple_repeat 2 66 0 2 611 25 83 0 0 chr3L 3417393 3417453 -21126104 + AT_rich Low_complexity Low_complexity 1 60 0 2 611 24 0 0 0 chr3L 3417495 3417519 -21126038 + AT_rich Low_complexity Low_complexity 1 24 0 2 611 22 88 0 0 chr3L 3419362 3419419 -21124138 + AT_rich Low_complexity Low_complexity 1 57 0 2 611 192 77 0 0 chr3L 3420471 3420497 -21123060 + (CTTCG)n Simple_repeat Simple_repeat 1 26 0 2 611 26 0 0 0 chr3L 3421798 3421824 -21121733 + AT_rich Low_complexity Low_complexity 1 26 0 2 611 27 29 0 0 chr3L 3422282 3422316 -21121241 + AT_rich Low_complexity Low_complexity 1 34 0 2 611 23 54 0 0 chr3L 3422620 3422657 -21120900 + AT_rich Low_complexity Low_complexity 1 37 0 2 611 26 0 0 0 chr3L 3422933 3422959 -21120598 + AT_rich Low_complexity Low_complexity 1 26 0 2 611 200 111 83 0 chr3L 3425768 3425804 -21117753 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 2 611 25 0 0 0 chr3L 3425960 3425985 -21117572 + AT_rich Low_complexity Low_complexity 1 25 0 2 611 189 74 0 0 chr3L 3428424 3428451 -21115106 + (CAG)n Simple_repeat Simple_repeat 3 29 0 2 611 22 56 0 0 chr3L 3432787 3432823 -21110734 + AT_rich Low_complexity Low_complexity 1 36 0 2 611 192 40 0 0 chr3L 3434116 3434141 -21109416 + (TG)n Simple_repeat Simple_repeat 2 26 0 2 611 255 122 0 0 chr3L 3436992 3437041 -21106516 + (A)n Simple_repeat Simple_repeat 1 49 0 2 611 201 244 0 0 chr3L 3437509 3437554 -21106003 + (TG)n Simple_repeat Simple_repeat 2 46 0 2 611 222 62 0 0 chr3L 3440669 3440701 -21102856 + (ATGGTG)n Simple_repeat Simple_repeat 5 36 0 2 611 23 0 0 0 chr3L 3441700 3441723 -21101834 + AT_rich Low_complexity Low_complexity 1 23 0 2 611 217 218 0 0 chr3L 3442523 3442578 -21100979 + CT-rich Low_complexity Low_complexity 2 56 0 2 611 294 73 0 0 chr3L 3445678 3445719 -21097838 + (TAA)n Simple_repeat Simple_repeat 3 43 0 2 611 38 85 0 0 chr3L 3447825 3447919 -21095638 + AT_rich Low_complexity Low_complexity 1 94 0 2 611 23 0 0 0 chr3L 3448233 3448256 -21095301 + AT_rich Low_complexity Low_complexity 1 23 0 2 611 216 175 0 0 chr3L 3450311 3450351 -21093206 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 611 215 160 0 39 chr3L 3450394 3450446 -21093111 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 2 611 207 0 0 0 chr3L 3453008 3453031 -21090526 + (GA)n Simple_repeat Simple_repeat 2 24 0 2 611 267 150 0 0 chr3L 3454611 3454671 -21088886 + (CAGT)n Simple_repeat Simple_repeat 2 61 0 2 611 223 178 0 0 chr3L 3455300 3455345 -21088212 + (CAGT)n Simple_repeat Simple_repeat 4 48 0 2 611 189 0 0 0 chr3L 3455674 3455695 -21087862 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 611 180 0 0 0 chr3L 3456092 3456112 -21087445 + (TCTA)n Simple_repeat Simple_repeat 4 23 0 2 611 216 185 0 0 chr3L 3456247 3456301 -21087256 + (CAT)n Simple_repeat Simple_repeat 2 55 0 2 611 186 143 0 0 chr3L 3458548 3458583 -21084974 + (CAT)n Simple_repeat Simple_repeat 3 37 0 2 611 202 361 0 0 chr3L 3459277 3459374 -21084183 + CT-rich Low_complexity Low_complexity 2 98 0 2 611 31 68 0 0 chr3L 3461915 3461974 -21081583 + AT_rich Low_complexity Low_complexity 1 59 0 2 611 27 73 0 0 chr3L 3468026 3468081 -21075476 + AT_rich Low_complexity Low_complexity 1 55 0 2 611 26 0 0 0 chr3L 3472046 3472072 -21071485 + AT_rich Low_complexity Low_complexity 1 26 0 2 611 27 81 0 0 chr3L 3472190 3472252 -21071305 + AT_rich Low_complexity Low_complexity 1 62 0 2 611 3111 0 0 11 chr3L 3475134 3475490 -21068067 + LINEJ1_DM LINE Jockey 4669 5020 0 2 611 225 0 0 0 chr3L 3475490 3475515 -21068042 + (A)n Simple_repeat Simple_repeat 1 25 0 2 611 249 33 0 0 chr3L 3477866 3477896 -21065661 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 611 200 179 51 0 chr3L 3480069 3480108 -21063449 + (TATG)n Simple_repeat Simple_repeat 3 43 0 2 611 201 162 0 0 chr3L 3481168 3481205 -21062352 + CT-rich Low_complexity Low_complexity 2 38 0 2 611 207 200 0 0 chr3L 3485331 3485376 -21058181 + A-rich Low_complexity Low_complexity 3 47 0 2 611 215 232 24 35 chr3L 3490303 3490388 -21053169 + (TTGG)n Simple_repeat Simple_repeat 3 86 0 2 611 195 69 0 0 chr3L 3494721 3494750 -21048807 + (CAGT)n Simple_repeat Simple_repeat 3 31 0 2 611 29 28 0 0 chr3L 3496036 3496072 -21047485 + AT_rich Low_complexity Low_complexity 1 36 0 2 611 22 0 0 0 chr3L 3496727 3496749 -21046808 + AT_rich Low_complexity Low_complexity 1 22 0 2 611 24 32 0 0 chr3L 3496765 3496796 -21046761 + AT_rich Low_complexity Low_complexity 1 31 0 2 611 198 71 0 0 chr3L 3500334 3500362 -21043195 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2 611 237 33 0 0 chr3L 3500640 3500670 -21042887 + (TG)n Simple_repeat Simple_repeat 1 30 0 2 611 27 49 0 0 chr3L 3500976 3501017 -21042540 + AT_rich Low_complexity Low_complexity 1 41 0 2 611 205 209 23 0 chr3L 3503643 3503686 -21039871 + (TTG)n Simple_repeat Simple_repeat 3 46 0 2 611 22 68 0 40 chr3L 3505316 3505392 -21038165 + AT_rich Low_complexity Low_complexity 1 73 0 2 611 21 0 0 0 chr3L 3505877 3505898 -21037659 + AT_rich Low_complexity Low_complexity 1 21 0 2 611 304 315 0 0 chr3L 3506130 3506241 -21037316 + (TAA)n Simple_repeat Simple_repeat 2 112 0 2 611 253 250 14 0 chr3L 3509732 3509804 -21033753 + (TA)n Simple_repeat Simple_repeat 1 73 0 2 611 22 56 0 0 chr3L 3513043 3513079 -21030478 + AT_rich Low_complexity Low_complexity 1 36 0 2 611 225 178 0 0 chr3L 3516008 3516053 -21027504 + (CA)n Simple_repeat Simple_repeat 1 45 0 2 611 202 217 0 0 chr3L 3516640 3516686 -21026871 + (CAA)n Simple_repeat Simple_repeat 2 47 0 2 611 271 266 0 0 chr3L 3516737 3516816 -21026741 + (CAA)n Simple_repeat Simple_repeat 3 81 0 2 611 212 184 20 0 chr3L 3520544 3520593 -21022964 + T-rich Low_complexity Low_complexity 3 52 0 2 611 236 208 0 0 chr3L 3521634 3521682 -21021875 + A-rich Low_complexity Low_complexity 1 48 0 2 611 21 0 0 0 chr3L 3522921 3522942 -21020615 + AT_rich Low_complexity Low_complexity 1 21 0 2 611 32 0 0 0 chr3L 3527802 3527834 -21015723 + AT_rich Low_complexity Low_complexity 1 32 0 2 611 21 0 0 0 chr3L 3528678 3528699 -21014858 + AT_rich Low_complexity Low_complexity 1 21 0 2 611 228 67 0 0 chr3L 3529106 3529136 -21014421 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2 611 222 346 0 0 chr3L 3530513 3530591 -21012966 + (TG)n Simple_repeat Simple_repeat 1 78 0 2 611 35 0 0 0 chr3L 3531532 3531567 -21011990 + AT_rich Low_complexity Low_complexity 1 35 0 2 611 219 146 0 0 chr3L 3536470 3536511 -21007046 + (A)n Simple_repeat Simple_repeat 1 41 0 2 611 210 250 0 0 chr3L 3536839 3536895 -21006662 + (TTG)n Simple_repeat Simple_repeat 2 57 0 2 612 208 108 54 0 chr3L 3540475 3540512 -21003045 + (TATG)n Simple_repeat Simple_repeat 2 40 0 2 612 205 250 0 0 chr3L 3542599 3542643 -21000914 + CT-rich Low_complexity Low_complexity 4 47 0 2 612 181 161 16 31 chr3L 3543010 3543074 -21000483 + T-rich Low_complexity Low_complexity 3 65 0 2 612 295 255 48 24 chr3L 3543409 3543574 -20999983 + (CTG)n Simple_repeat Simple_repeat 1 169 0 2 612 23 33 0 0 chr3L 3543806 3543836 -20999721 + AT_rich Low_complexity Low_complexity 1 30 0 2 612 21 0 0 0 chr3L 3544432 3544453 -20999104 + AT_rich Low_complexity Low_complexity 1 21 0 2 612 34 0 0 0 chr3L 3546290 3546324 -20997233 + AT_rich Low_complexity Low_complexity 1 34 0 2 612 234 150 0 0 chr3L 3546784 3546824 -20996733 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 612 29 47 0 0 chr3L 3547712 3547755 -20995802 + AT_rich Low_complexity Low_complexity 1 43 0 2 612 24 32 0 0 chr3L 3548099 3548130 -20995427 + AT_rich Low_complexity Low_complexity 1 31 0 2 612 27 73 0 0 chr3L 3548752 3548807 -20994750 + AT_rich Low_complexity Low_complexity 1 55 0 2 612 180 0 0 0 chr3L 3552590 3552610 -20990947 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 2 612 194 150 25 0 chr3L 3555929 3555969 -20987588 + (TCG)n Simple_repeat Simple_repeat 2 42 0 2 612 198 103 0 0 chr3L 3560955 3560984 -20982573 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 612 195 139 0 0 chr3L 3561980 3562016 -20981541 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2 612 25 0 0 0 chr3L 3565662 3565687 -20977870 + AT_rich Low_complexity Low_complexity 1 25 0 2 612 254 250 0 0 chr3L 3569689 3569745 -20973812 + (CA)n Simple_repeat Simple_repeat 2 57 0 2 612 24 53 0 0 chr3L 3571752 3571790 -20971767 + AT_rich Low_complexity Low_complexity 1 38 0 2 612 225 65 0 0 chr3L 3572033 3572064 -20971493 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 612 21 57 0 0 chr3L 3573975 3574010 -20969547 + AT_rich Low_complexity Low_complexity 1 35 0 2 612 21 0 0 0 chr3L 3574490 3574511 -20969046 + AT_rich Low_complexity Low_complexity 1 21 0 2 612 22 0 0 0 chr3L 3574819 3574841 -20968716 + AT_rich Low_complexity Low_complexity 1 22 0 2 612 189 107 0 0 chr3L 3578320 3578348 -20965209 + (CACCAT)n Simple_repeat Simple_repeat 4 31 0 2 612 183 42 0 0 chr3L 3586203 3586227 -20957330 + (TTTTTG)n Simple_repeat Simple_repeat 4 27 0 2 612 21 0 0 0 chr3L 3588650 3588671 -20954886 + AT_rich Low_complexity Low_complexity 1 21 0 2 612 207 0 0 0 chr3L 3589510 3589533 -20954024 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 612 23 78 0 0 chr3L 3594022 3594073 -20949484 + AT_rich Low_complexity Low_complexity 1 51 0 2 612 2297 0 0 0 chr3L 3601353 3601629 -20941928 + Copia_LTR LTR Copia 1 276 0 2 612 22075 6 0 2 chr3L 3601629 3606330 -20937227 + Copia_I LTR Copia 1 4593 0 2 612 2297 0 0 0 chr3L 3606330 3606606 -20936951 + Copia_LTR LTR Copia 1 276 0 2 612 27 29 0 0 chr3L 3607427 3607461 -20936096 + AT_rich Low_complexity Low_complexity 1 34 0 2 612 23 0 0 0 chr3L 3610476 3610499 -20933058 + AT_rich Low_complexity Low_complexity 1 23 0 2 612 23 0 0 0 chr3L 3611608 3611631 -20931926 + AT_rich Low_complexity Low_complexity 1 23 0 2 612 22 56 0 0 chr3L 3612553 3612589 -20930968 + AT_rich Low_complexity Low_complexity 1 36 0 2 612 23 68 0 0 chr3L 3619672 3619716 -20923841 + AT_rich Low_complexity Low_complexity 1 44 0 2 612 247 244 65 113 chr3L 3624113 3624344 -20919213 + SAR_DM Satellite Satellite 574 793 -679 2 612 331 280 16 21 chr3L 3624243 3624433 -20919124 - XDMR_DM Unknown Unknown -7 353 165 2 612 32 43 0 0 chr3L 3625844 3625890 -20917667 + AT_rich Low_complexity Low_complexity 1 46 0 2 612 25 31 0 0 chr3L 3632410 3632442 -20911115 + AT_rich Low_complexity Low_complexity 1 32 0 2 612 26 0 0 0 chr3L 3632731 3632757 -20910800 + AT_rich Low_complexity Low_complexity 1 26 0 2 612 24 0 0 0 chr3L 3636543 3636567 -20906990 + AT_rich Low_complexity Low_complexity 1 24 0 2 612 21 36 0 0 chr3L 3638771 3638799 -20904758 + AT_rich Low_complexity Low_complexity 1 28 0 2 612 24 53 0 0 chr3L 3642754 3642792 -20900765 + AT_rich Low_complexity Low_complexity 1 38 0 2 612 231 103 0 0 chr3L 3644102 3644141 -20899416 + (TAAAAA)n Simple_repeat Simple_repeat 5 43 0 2 612 21 71 0 0 chr3L 3644542 3644584 -20898973 + AT_rich Low_complexity Low_complexity 1 42 0 2 612 364 186 0 30 chr3L 3644743 3644843 -20898714 + (CAA)n Simple_repeat Simple_repeat 2 98 0 2 612 258 148 0 0 chr3L 3644877 3644931 -20898626 + (CCA)n Simple_repeat Simple_repeat 1 54 0 2 612 272 135 0 0 chr3L 3645996 3646048 -20897509 + ROO_I LTR Pao 678 729 -7527 2 612 381 152 0 0 chr3L 3646176 3646268 -20897289 + ROO_I LTR Pao 641 732 -7524 2 612 278 138 17 0 chr3L 3646367 3646425 -20897132 + (CAG)n Simple_repeat Simple_repeat 3 61 0 2 612 252 122 0 0 chr3L 3646831 3646872 -20896685 + (CAG)n Simple_repeat Simple_repeat 1 41 0 2 612 220 186 0 0 chr3L 3646901 3646944 -20896613 + CT-rich Low_complexity Low_complexity 2 44 0 2 612 183 204 0 0 chr3L 3647200 3647249 -20896308 + (CAG)n Simple_repeat Simple_repeat 1 49 0 2 612 185 132 26 0 chr3L 3647732 3647770 -20895787 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 2 612 25 0 0 0 chr3L 3652647 3652672 -20890885 + AT_rich Low_complexity Low_complexity 1 25 0 2 612 23 0 0 0 chr3L 3657533 3657556 -20886001 + AT_rich Low_complexity Low_complexity 1 23 0 2 612 25 31 0 0 chr3L 3659092 3659124 -20884433 + AT_rich Low_complexity Low_complexity 1 32 0 2 612 22 0 0 0 chr3L 3661908 3661930 -20881627 + AT_rich Low_complexity Low_complexity 1 22 0 2 612 189 0 0 0 chr3L 3663636 3663657 -20879900 + (ACTG)n Simple_repeat Simple_repeat 1 21 0 2 612 207 100 0 0 chr3L 3669581 3669611 -20873946 + (CAG)n Simple_repeat Simple_repeat 3 32 0 2 613 203 152 0 0 chr3L 3675263 3675296 -20868261 + (GAGTG)n Simple_repeat Simple_repeat 4 36 0 2 613 280 192 38 13 chr3L 3678841 3678920 -20864637 - ROO_I LTR Pao -7524 732 652 2 613 184 138 29 44 chr3L 3680676 3680744 -20862813 + (CAA)n Simple_repeat Simple_repeat 1 67 0 2 613 26 30 0 0 chr3L 3684166 3684199 -20859358 + AT_rich Low_complexity Low_complexity 1 33 0 2 613 243 0 0 0 chr3L 3685689 3685716 -20857841 + (GCTTG)n Simple_repeat Simple_repeat 1 27 0 2 613 22 35 0 0 chr3L 3689011 3689040 -20854517 + AT_rich Low_complexity Low_complexity 1 29 0 2 613 22 0 0 0 chr3L 3689821 3689843 -20853714 + AT_rich Low_complexity Low_complexity 1 22 0 2 613 259 287 51 25 chr3L 3691101 3691219 -20852338 + ROO_I LTR Pao 663 783 -7473 2 613 22 35 0 0 chr3L 3694544 3694573 -20848984 + AT_rich Low_complexity Low_complexity 1 29 0 2 613 25 0 0 0 chr3L 3701377 3701402 -20842155 + AT_rich Low_complexity Low_complexity 1 25 0 2 613 22 35 0 0 chr3L 3703304 3703333 -20840224 + AT_rich Low_complexity Low_complexity 1 29 0 2 613 23 33 0 0 chr3L 3708596 3708626 -20834931 + AT_rich Low_complexity Low_complexity 1 30 0 2 613 189 74 0 0 chr3L 3709346 3709373 -20834184 + (T)n Simple_repeat Simple_repeat 1 27 0 2 613 279 164 30 0 chr3L 3711373 3711440 -20832117 - ROO_I LTR Pao -7533 723 655 2 613 246 197 63 38 chr3L 3711446 3711525 -20832032 + ROO_I LTR Pao 680 760 -7496 2 613 21 0 0 0 chr3L 3711865 3711886 -20831671 + AT_rich Low_complexity Low_complexity 1 21 0 2 613 223 241 0 0 chr3L 3712389 3712443 -20831114 + A-rich Low_complexity Low_complexity 2 55 0 2 613 44 20 0 0 chr3L 3713077 3713128 -20830429 + AT_rich Low_complexity Low_complexity 1 51 0 2 613 286 264 23 23 chr3L 3715423 3715555 -20828002 + (TA)n Simple_repeat Simple_repeat 2 133 0 2 613 288 72 35 18 chr3L 3715996 3716053 -20827504 + (TTTTTG)n Simple_repeat Simple_repeat 3 60 0 2 613 22 0 0 0 chr3L 3716901 3716923 -20826634 + AT_rich Low_complexity Low_complexity 1 22 0 2 613 252 300 0 0 chr3L 3717158 3717248 -20826309 + T-rich Low_complexity Low_complexity 1 90 0 2 613 24 32 0 0 chr3L 3720176 3720207 -20823350 + AT_rich Low_complexity Low_complexity 1 31 0 2 613 216 0 0 0 chr3L 3721604 3721628 -20821929 + (TAG)n Simple_repeat Simple_repeat 1 24 0 2 613 246 208 26 13 chr3L 3723271 3723349 -20820208 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 613 264 77 0 0 chr3L 3727062 3727101 -20816456 + (CAG)n Simple_repeat Simple_repeat 2 40 0 2 613 354 185 0 0 chr3L 3733353 3733434 -20810123 + (CAT)n Simple_repeat Simple_repeat 1 81 0 2 613 21 36 0 0 chr3L 3734872 3734900 -20808657 + AT_rich Low_complexity Low_complexity 1 28 0 2 613 26 0 0 0 chr3L 3735104 3735130 -20808427 + AT_rich Low_complexity Low_complexity 1 26 0 2 613 22 0 0 0 chr3L 3736339 3736361 -20807196 + AT_rich Low_complexity Low_complexity 1 22 0 2 613 23 0 0 0 chr3L 3736976 3736999 -20806558 + AT_rich Low_complexity Low_complexity 1 23 0 2 613 207 0 0 0 chr3L 3739115 3739138 -20804419 + (TA)n Simple_repeat Simple_repeat 1 23 0 2 613 243 173 0 0 chr3L 3742668 3742720 -20800837 + (CTG)n Simple_repeat Simple_repeat 3 54 0 2 613 342 206 0 0 chr3L 3742774 3742866 -20800691 - ROO_I LTR Pao -7527 729 638 2 613 30 59 0 0 chr3L 3743134 3743185 -20800372 + AT_rich Low_complexity Low_complexity 1 51 0 2 613 207 0 0 0 chr3L 3743233 3743256 -20800301 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 613 25 51 0 0 chr3L 3744993 3745032 -20798525 + AT_rich Low_complexity Low_complexity 1 39 0 2 613 25 51 0 0 chr3L 3746116 3746155 -20797402 + AT_rich Low_complexity Low_complexity 1 39 0 2 613 26 0 0 0 chr3L 3747300 3747326 -20796231 + AT_rich Low_complexity Low_complexity 1 26 0 2 613 24 32 0 0 chr3L 3749345 3749376 -20794181 + AT_rich Low_complexity Low_complexity 1 31 0 2 613 23 0 0 0 chr3L 3750006 3750029 -20793528 + AT_rich Low_complexity Low_complexity 1 23 0 2 613 25 0 0 0 chr3L 3750592 3750617 -20792940 + AT_rich Low_complexity Low_complexity 1 25 0 2 613 210 143 0 0 chr3L 3751558 3751593 -20791964 + (TG)n Simple_repeat Simple_repeat 2 36 0 2 613 26 30 0 0 chr3L 3752316 3752349 -20791208 + AT_rich Low_complexity Low_complexity 1 33 0 2 613 219 36 0 0 chr3L 3756939 3756967 -20786590 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 613 198 103 0 0 chr3L 3760112 3760141 -20783416 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 613 24 0 0 0 chr3L 3762181 3762205 -20781352 + AT_rich Low_complexity Low_complexity 1 24 0 2 613 23 0 0 0 chr3L 3762517 3762540 -20781017 + AT_rich Low_complexity Low_complexity 1 23 0 2 613 23 0 0 0 chr3L 3763142 3763165 -20780392 + AT_rich Low_complexity Low_complexity 1 23 0 2 613 269 0 56 0 chr3L 3763800 3763836 -20779721 + (CATATA)n Simple_repeat Simple_repeat 2 39 0 2 613 26 30 0 0 chr3L 3766302 3766335 -20777222 + AT_rich Low_complexity Low_complexity 1 33 0 2 613 207 100 0 0 chr3L 3766549 3766579 -20776978 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2 613 26 64 0 0 chr3L 3766764 3766811 -20776746 + AT_rich Low_complexity Low_complexity 1 47 0 2 613 27 0 0 0 chr3L 3767732 3767759 -20775798 + AT_rich Low_complexity Low_complexity 1 27 0 2 613 21 36 0 0 chr3L 3769177 3769205 -20774352 + AT_rich Low_complexity Low_complexity 1 28 0 2 613 215 208 0 40 chr3L 3771550 3771600 -20771957 + (TTG)n Simple_repeat Simple_repeat 2 49 0 2 613 231 103 0 0 chr3L 3773064 3773103 -20770454 + (T)n Simple_repeat Simple_repeat 1 39 0 2 613 25 31 0 0 chr3L 3777509 3777541 -20766016 + AT_rich Low_complexity Low_complexity 1 32 0 2 613 27 0 0 0 chr3L 3778772 3778799 -20764758 + AT_rich Low_complexity Low_complexity 1 27 0 2 613 25 31 0 0 chr3L 3779219 3779251 -20764306 + AT_rich Low_complexity Low_complexity 1 32 0 2 613 24 67 0 0 chr3L 3779504 3779549 -20764008 + AT_rich Low_complexity Low_complexity 1 45 0 2 613 198 103 0 0 chr3L 3780004 3780033 -20763524 + (AGGGGG)n Simple_repeat Simple_repeat 3 31 0 2 613 188 67 0 32 chr3L 3780462 3780493 -20763064 + (CTG)n Simple_repeat Simple_repeat 1 30 0 2 613 301 233 0 62 chr3L 3780738 3780834 -20762723 - ROO_I LTR Pao -7511 745 656 2 613 210 242 16 0 chr3L 3781019 3781081 -20762476 + (CTG)n Simple_repeat Simple_repeat 3 65 0 2 613 236 170 0 154 chr3L 3781082 3781186 -20762371 - ROO_I LTR Pao -7522 734 647 2 613 217 180 0 20 chr3L 3789027 3789078 -20754479 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 613 21 0 0 0 chr3L 3790474 3790495 -20753062 + AT_rich Low_complexity Low_complexity 1 21 0 2 613 21 36 0 0 chr3L 3791510 3791538 -20752019 + AT_rich Low_complexity Low_complexity 1 28 0 2 613 33 73 0 0 chr3L 3795176 3795244 -20748313 + AT_rich Low_complexity Low_complexity 1 68 0 2 613 21 0 0 0 chr3L 3796131 3796152 -20747405 + AT_rich Low_complexity Low_complexity 1 21 0 2 613 27 73 0 0 chr3L 3798738 3798793 -20744764 + AT_rich Low_complexity Low_complexity 1 55 0 2 613 27 0 0 0 chr3L 3799427 3799454 -20744103 + AT_rich Low_complexity Low_complexity 1 27 0 2 613 321 125 0 0 chr3L 3800025 3800081 -20743476 + (CTG)n Simple_repeat Simple_repeat 3 58 0 2 613 352 82 16 16 chr3L 3800320 3800382 -20743175 + (CTG)n Simple_repeat Simple_repeat 3 64 0 2 613 338 245 10 10 chr3L 3800424 3800527 -20743030 + (CTG)n Simple_repeat Simple_repeat 2 104 0 2 614 35 0 0 0 chr3L 3803892 3803927 -20739630 + AT_rich Low_complexity Low_complexity 1 35 0 2 614 216 204 0 0 chr3L 3805857 3805901 -20737656 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2 614 31 26 0 0 chr3L 3814028 3814066 -20729491 + AT_rich Low_complexity Low_complexity 1 38 0 2 614 21 82 0 0 chr3L 3819425 3819474 -20724083 + AT_rich Low_complexity Low_complexity 1 49 0 2 614 34 0 0 0 chr3L 3820945 3820979 -20722578 + AT_rich Low_complexity Low_complexity 1 34 0 2 614 524 119 8 25 chr3L 3825594 3825715 -20717842 + (CAG)n Simple_repeat Simple_repeat 3 121 0 2 614 22 0 0 0 chr3L 3826079 3826101 -20717456 + AT_rich Low_complexity Low_complexity 1 22 0 2 614 189 0 0 0 chr3L 3828306 3828327 -20715230 + (TC)n Simple_repeat Simple_repeat 1 21 0 2 614 21 82 0 0 chr3L 3828579 3828628 -20714929 + AT_rich Low_complexity Low_complexity 1 49 0 2 614 24 53 0 0 chr3L 3829314 3829352 -20714205 + AT_rich Low_complexity Low_complexity 1 38 0 2 614 230 338 0 0 chr3L 3829496 3829573 -20713984 + (CCG)n Simple_repeat Simple_repeat 2 78 0 2 614 259 260 0 30 chr3L 3829623 3829722 -20713835 + ROO_I LTR Pao 639 734 -7522 2 614 228 217 0 0 chr3L 3829749 3829795 -20713762 + (CAG)n Simple_repeat Simple_repeat 1 46 0 2 614 239 140 20 0 chr3L 3830576 3830626 -20712931 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 2 614 234 247 55 0 chr3L 3831811 3831884 -20711673 + ROO_I LTR Pao 651 727 -7529 2 614 288 111 0 0 chr3L 3831948 3831993 -20711564 + (CAG)n Simple_repeat Simple_repeat 1 45 0 2 614 1711 0 0 0 chr3L 3833791 3833977 -20709580 + POGON1 DNA Pogo 1 186 0 2 614 28 29 0 0 chr3L 3835002 3835037 -20708520 + AT_rich Low_complexity Low_complexity 1 35 0 2 614 21 36 0 0 chr3L 3835164 3835192 -20708365 + AT_rich Low_complexity Low_complexity 1 28 0 2 614 370 213 21 0 chr3L 3836150 3836244 -20707313 + ROO_I LTR Pao 655 750 -7506 2 614 183 114 0 0 chr3L 3837681 3837716 -20705841 + (CAG)n Simple_repeat Simple_repeat 1 35 0 2 614 183 42 0 0 chr3L 3840257 3840281 -20703276 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 614 26 64 0 0 chr3L 3840836 3840883 -20702674 + AT_rich Low_complexity Low_complexity 1 47 0 2 614 252 0 0 0 chr3L 3841141 3841169 -20702388 + (GAAAA)n Simple_repeat Simple_repeat 1 28 0 2 614 23 33 0 0 chr3L 3842311 3842341 -20701216 + AT_rich Low_complexity Low_complexity 1 30 0 2 614 28 29 0 0 chr3L 3842360 3842395 -20701162 + AT_rich Low_complexity Low_complexity 1 35 0 2 614 24 53 0 0 chr3L 3845032 3845070 -20698487 + AT_rich Low_complexity Low_complexity 1 38 0 2 614 186 43 0 0 chr3L 3849258 3849281 -20694276 + (A)n Simple_repeat Simple_repeat 1 23 0 2 614 21 0 0 0 chr3L 3850820 3850841 -20692716 + AT_rich Low_complexity Low_complexity 1 21 0 2 614 212 179 0 0 chr3L 3853965 3854004 -20689553 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 2 614 198 0 0 0 chr3L 3856390 3856412 -20687145 + (A)n Simple_repeat Simple_repeat 1 22 0 2 614 23 33 0 0 chr3L 3856725 3856755 -20686802 + AT_rich Low_complexity Low_complexity 1 30 0 2 614 21 57 0 0 chr3L 3860005 3860040 -20683517 + AT_rich Low_complexity Low_complexity 1 35 0 2 614 198 0 0 0 chr3L 3861194 3861216 -20682341 + (CAAA)n Simple_repeat Simple_repeat 1 22 0 2 614 193 75 0 48 chr3L 3861250 3861292 -20682265 + (TTTAA)n Simple_repeat Simple_repeat 5 44 0 2 614 33 25 0 0 chr3L 3861451 3861491 -20682066 + AT_rich Low_complexity Low_complexity 1 40 0 2 614 189 107 0 0 chr3L 3862334 3862362 -20681195 + (TTCGGG)n Simple_repeat Simple_repeat 6 33 0 2 614 243 61 0 0 chr3L 3865503 3865536 -20678021 + (CAG)n Simple_repeat Simple_repeat 3 35 0 2 614 363 127 0 0 chr3L 3865716 3865779 -20677778 + (CAG)n Simple_repeat Simple_repeat 1 63 0 2 614 353 157 24 0 chr3L 3866814 3866897 -20676660 - ROO_I LTR Pao -7516 740 656 2 614 33 43 0 0 chr3L 3870689 3870736 -20672821 + AT_rich Low_complexity Low_complexity 1 47 0 2 614 180 0 0 0 chr3L 3870982 3871002 -20672555 + (TCTG)n Simple_repeat Simple_repeat 2 21 0 2 614 345 253 20 33 chr3L 3872024 3872175 -20671382 + XDMR_DM Unknown Unknown 211 359 -1 2 614 340 216 52 35 chr3L 3872180 3872295 -20671262 + XDMR Unknown Unknown 37 153 -208 2 614 24 32 0 0 chr3L 3872836 3872867 -20670690 + AT_rich Low_complexity Low_complexity 1 31 0 2 614 205 179 26 0 chr3L 3876827 3876866 -20666691 + (CAG)n Simple_repeat Simple_repeat 2 41 0 2 614 309 140 0 0 chr3L 3877126 3877183 -20666374 + (TG)n Simple_repeat Simple_repeat 2 58 0 2 614 210 195 0 38 chr3L 3877230 3877310 -20666247 + (TTG)n Simple_repeat Simple_repeat 2 78 0 2 614 24 91 0 0 chr3L 3881131 3881197 -20662360 + AT_rich Low_complexity Low_complexity 1 66 0 2 614 24 0 0 0 chr3L 3884977 3885001 -20658556 + AT_rich Low_complexity Low_complexity 1 24 0 2 614 24 32 0 0 chr3L 3886267 3886298 -20657259 + AT_rich Low_complexity Low_complexity 1 31 0 2 614 206 234 0 0 chr3L 3887779 3887826 -20655731 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 614 204 256 0 37 chr3L 3888549 3888630 -20654927 + T-rich Low_complexity Low_complexity 3 80 0 2 614 200 34 0 33 chr3L 3889924 3889954 -20653603 + (CTG)n Simple_repeat Simple_repeat 1 29 0 2 614 21 0 0 0 chr3L 3892416 3892437 -20651120 + AT_rich Low_complexity Low_complexity 1 21 0 2 614 31 0 0 0 chr3L 3894486 3894517 -20649040 + AT_rich Low_complexity Low_complexity 1 31 0 2 614 23 54 0 0 chr3L 3910507 3910544 -20633013 + AT_rich Low_complexity Low_complexity 1 37 0 2 614 23 54 0 0 chr3L 3910573 3910610 -20632947 + AT_rich Low_complexity Low_complexity 1 37 0 2 614 25 0 0 0 chr3L 3911298 3911323 -20632234 + AT_rich Low_complexity Low_complexity 1 25 0 2 614 192 77 0 0 chr3L 3912672 3912698 -20630859 + (A)n Simple_repeat Simple_repeat 1 26 0 2 614 26 30 0 0 chr3L 3914708 3914741 -20628816 + AT_rich Low_complexity Low_complexity 1 33 0 2 614 198 0 0 0 chr3L 3918863 3918885 -20624672 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 614 27 29 0 0 chr3L 3921161 3921195 -20622362 + AT_rich Low_complexity Low_complexity 1 34 0 2 614 26 30 0 0 chr3L 3923942 3923975 -20619582 + AT_rich Low_complexity Low_complexity 1 33 0 2 614 21 36 0 0 chr3L 3924985 3925013 -20618544 + AT_rich Low_complexity Low_complexity 1 28 0 2 614 225 180 0 0 chr3L 3929116 3929166 -20614391 + (CAAT)n Simple_repeat Simple_repeat 1 50 0 2 615 204 40 0 0 chr3L 3933817 3933842 -20609715 + (T)n Simple_repeat Simple_repeat 1 25 0 2 615 22 56 0 0 chr3L 3938652 3938688 -20604869 + AT_rich Low_complexity Low_complexity 1 36 0 2 615 27 29 0 0 chr3L 3942608 3942642 -20600915 + AT_rich Low_complexity Low_complexity 1 34 0 2 615 316 206 10 30 chr3L 3944118 3944218 -20599339 + ROO_I LTR Pao 631 728 -7528 2 615 25 65 0 0 chr3L 3947278 3947324 -20596233 + AT_rich Low_complexity Low_complexity 1 46 0 2 615 24 0 0 0 chr3L 3947551 3947575 -20595982 + AT_rich Low_complexity Low_complexity 1 24 0 2 615 32 57 0 0 chr3L 3947599 3947652 -20595905 + AT_rich Low_complexity Low_complexity 1 53 0 2 615 261 128 0 0 chr3L 3948155 3948202 -20595355 + (TGG)n Simple_repeat Simple_repeat 2 48 0 2 615 201 225 0 0 chr3L 3948540 3948580 -20594977 + (CGG)n Simple_repeat Simple_repeat 1 40 0 2 615 225 139 0 0 chr3L 3949881 3949924 -20593633 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 615 216 0 0 0 chr3L 3953390 3953414 -20590143 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 615 28 29 0 0 chr3L 3956588 3956623 -20586934 + AT_rich Low_complexity Low_complexity 1 35 0 2 615 402 74 0 0 chr3L 3957571 3957625 -20585932 + (TA)n Simple_repeat Simple_repeat 1 54 0 2 615 270 116 0 0 chr3L 3958296 3958339 -20585218 + (CAT)n Simple_repeat Simple_repeat 1 43 0 2 615 204 263 0 0 chr3L 3959727 3959784 -20583773 + CT-rich Low_complexity Low_complexity 2 58 0 2 615 29 47 0 0 chr3L 3962879 3962922 -20580635 + AT_rich Low_complexity Low_complexity 1 43 0 2 615 237 222 0 0 chr3L 3963574 3963628 -20579929 + GA-rich Low_complexity Low_complexity 2 55 0 2 615 180 0 0 0 chr3L 3964018 3964038 -20579519 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 615 300 91 0 0 chr3L 3964216 3964260 -20579297 + (TC)n Simple_repeat Simple_repeat 2 45 0 2 615 24 53 0 0 chr3L 3964644 3964682 -20578875 + AT_rich Low_complexity Low_complexity 1 38 0 2 615 207 114 0 0 chr3L 3965710 3965745 -20577812 + (GTTTG)n Simple_repeat Simple_repeat 1 35 0 2 615 203 109 87 0 chr3L 3966113 3966159 -20577398 + (CAGAC)n Simple_repeat Simple_repeat 4 53 0 2 615 201 121 0 0 chr3L 3966905 3966938 -20576619 + (CATATA)n Simple_repeat Simple_repeat 3 35 0 2 615 248 271 0 0 chr3L 3967110 3967169 -20576388 + (CAG)n Simple_repeat Simple_repeat 1 59 0 2 615 180 152 0 0 chr3L 3969818 3969851 -20573706 + (CCGAA)n Simple_repeat Simple_repeat 4 36 0 2 615 258 136 0 0 chr3L 3970817 3970861 -20572696 + (CA)n Simple_repeat Simple_repeat 2 45 0 2 615 227 217 0 16 chr3L 3973082 3973143 -20570414 - ROO_I LTR Pao -7540 716 657 2 615 249 162 40 13 chr3L 3973394 3973469 -20570088 + ROO_I LTR Pao 650 726 -7530 2 615 214 158 0 0 chr3L 3974723 3974761 -20568796 + (TTGGGG)n Simple_repeat Simple_repeat 3 40 0 2 615 228 211 0 66 chr3L 3976553 3976629 -20566928 + ROO_I LTR Pao 660 730 -7526 2 615 219 69 0 0 chr3L 3978994 3979023 -20564534 + (ATG)n Simple_repeat Simple_repeat 1 29 0 2 615 21 0 0 0 chr3L 3979829 3979850 -20563707 + AT_rich Low_complexity Low_complexity 1 21 0 2 615 183 80 0 0 chr3L 3983994 3984019 -20559538 + (CAA)n Simple_repeat Simple_repeat 1 25 0 2 615 273 146 0 0 chr3L 3984472 3984520 -20559037 + (CAAAG)n Simple_repeat Simple_repeat 3 50 0 2 615 287 65 22 0 chr3L 3984804 3984850 -20558707 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 615 249 163 78 107 chr3L 3985283 3985386 -20558171 + ROO_I LTR Pao 641 740 -7516 2 615 297 51 0 0 chr3L 3986974 3987013 -20556544 + (CAG)n Simple_repeat Simple_repeat 3 41 0 2 615 219 88 0 0 chr3L 3988564 3988598 -20554959 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 2 615 180 0 0 0 chr3L 3989745 3989765 -20553792 + (CAGAA)n Simple_repeat Simple_repeat 1 20 0 2 615 195 167 0 0 chr3L 3989903 3989945 -20553612 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 2 615 22 0 0 0 chr3L 3990524 3990546 -20553011 + AT_rich Low_complexity Low_complexity 1 22 0 2 615 204 40 0 0 chr3L 3990646 3990671 -20552886 + (AATTG)n Simple_repeat Simple_repeat 4 28 0 2 615 25 0 0 0 chr3L 3990678 3990703 -20552854 + AT_rich Low_complexity Low_complexity 1 25 0 2 615 186 167 0 0 chr3L 3991695 3991731 -20551826 + (TTGTG)n Simple_repeat Simple_repeat 2 37 0 2 615 223 178 0 22 chr3L 3993101 3993147 -20550410 + (CA)n Simple_repeat Simple_repeat 2 46 0 2 615 207 69 0 0 chr3L 3995534 3995563 -20547994 + (GTATG)n Simple_repeat Simple_repeat 5 33 0 2 615 183 42 0 0 chr3L 3995696 3995720 -20547837 + (GGATG)n Simple_repeat Simple_repeat 3 26 0 2 615 212 200 20 0 chr3L 3996500 3996550 -20547007 + A-rich Low_complexity Low_complexity 2 52 0 2 615 405 274 8 8 chr3L 3997855 3997980 -20545577 - XDMR Unknown Unknown -236 125 1 2 615 622 276 62 20 chr3L 3997868 3998160 -20545397 + SAR_DM Satellite Satellite 603 906 -566 2 615 24 0 0 0 chr3L 3999194 3999218 -20544339 + AT_rich Low_complexity Low_complexity 1 24 0 2 615 26 50 0 0 chr3L 3999300 3999340 -20544217 + AT_rich Low_complexity Low_complexity 1 40 0 2 615 186 174 0 0 chr3L 4001078 4001124 -20542433 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 615 186 217 0 0 chr3L 4001173 4001242 -20542315 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 615 23 0 0 0 chr3L 4002285 4002308 -20541249 + AT_rich Low_complexity Low_complexity 1 23 0 2 615 21 0 0 0 chr3L 4002426 4002447 -20541110 + AT_rich Low_complexity Low_complexity 1 21 0 2 615 25 31 0 0 chr3L 4003265 4003297 -20540260 + AT_rich Low_complexity Low_complexity 1 32 0 2 615 337 245 0 29 chr3L 4007896 4008001 -20535556 - ROO_I LTR Pao -7522 734 633 2 615 220 214 36 0 chr3L 4008301 4008357 -20535200 + (CTG)n Simple_repeat Simple_repeat 1 58 0 2 615 291 253 24 0 chr3L 4008398 4008481 -20535076 + (CAG)n Simple_repeat Simple_repeat 3 87 0 2 615 21 0 0 0 chr3L 4013307 4013328 -20530229 + AT_rich Low_complexity Low_complexity 1 21 0 2 615 22 109 0 0 chr3L 4018614 4018706 -20524851 + AT_rich Low_complexity Low_complexity 1 92 0 2 615 21 36 0 0 chr3L 4019901 4019929 -20523628 + AT_rich Low_complexity Low_complexity 1 28 0 2 615 24 0 0 0 chr3L 4026393 4026417 -20517140 + AT_rich Low_complexity Low_complexity 1 24 0 2 615 27 0 0 0 chr3L 4033996 4034023 -20509534 + AT_rich Low_complexity Low_complexity 1 27 0 2 615 28 0 0 0 chr3L 4040446 4040474 -20503083 + AT_rich Low_complexity Low_complexity 1 28 0 2 615 189 196 0 0 chr3L 4040752 4040803 -20502754 + (CAA)n Simple_repeat Simple_repeat 1 51 0 2 615 21 57 0 0 chr3L 4042587 4042622 -20500935 + AT_rich Low_complexity Low_complexity 1 35 0 2 615 200 103 24 49 chr3L 4045542 4045583 -20497974 + T-rich Low_complexity Low_complexity 4 43 0 2 615 34 24 0 0 chr3L 4047593 4047634 -20495923 + AT_rich Low_complexity Low_complexity 1 41 0 2 615 205 179 0 0 chr3L 4048773 4048812 -20494745 + (ATG)n Simple_repeat Simple_repeat 1 39 0 2 615 28 0 0 0 chr3L 4049200 4049228 -20494329 + AT_rich Low_complexity Low_complexity 1 28 0 2 615 23 68 0 0 chr3L 4049305 4049349 -20494208 + AT_rich Low_complexity Low_complexity 1 44 0 2 615 212 250 0 0 chr3L 4053689 4053753 -20489804 + T-rich Low_complexity Low_complexity 1 64 0 2 615 22 0 0 0 chr3L 4056136 4056158 -20487399 + AT_rich Low_complexity Low_complexity 1 22 0 2 615 22 56 0 0 chr3L 4059648 4059684 -20483873 + AT_rich Low_complexity Low_complexity 1 36 0 2 616 24 85 0 0 chr3L 4064168 4064227 -20479330 + AT_rich Low_complexity Low_complexity 1 59 0 2 616 34 42 0 0 chr3L 4073094 4073142 -20470415 + AT_rich Low_complexity Low_complexity 1 48 0 2 616 186 103 0 0 chr3L 4075317 4075346 -20468211 + (CCGAG)n Simple_repeat Simple_repeat 4 32 0 2 616 21 0 0 0 chr3L 4076718 4076739 -20466818 + AT_rich Low_complexity Low_complexity 1 21 0 2 616 21 57 0 0 chr3L 4078702 4078737 -20464820 + AT_rich Low_complexity Low_complexity 1 35 0 2 616 24 0 0 0 chr3L 4081685 4081709 -20461848 + AT_rich Low_complexity Low_complexity 1 24 0 2 616 182 128 0 25 chr3L 4085285 4085325 -20458232 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 616 201 250 0 35 chr3L 4087719 4087777 -20455780 + A-rich Low_complexity Low_complexity 4 59 0 2 616 21 36 0 0 chr3L 4089690 4089718 -20453839 + AT_rich Low_complexity Low_complexity 1 28 0 2 616 28 71 0 0 chr3L 4089777 4089833 -20453724 + AT_rich Low_complexity Low_complexity 1 56 0 2 616 256 250 0 14 chr3L 4090361 4090434 -20453123 + GA-rich Low_complexity Low_complexity 3 74 0 2 616 242 95 0 23 chr3L 4091684 4091727 -20451830 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 616 225 65 0 0 chr3L 4092407 4092438 -20451119 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 616 28 29 0 0 chr3L 4092772 4092807 -20450750 + AT_rich Low_complexity Low_complexity 1 35 0 2 616 33 66 0 0 chr3L 4093317 4093378 -20450179 + AT_rich Low_complexity Low_complexity 1 61 0 2 616 24 0 0 0 chr3L 4096402 4096426 -20447131 + AT_rich Low_complexity Low_complexity 1 24 0 2 616 327 85 0 0 chr3L 4097532 4097579 -20445978 + (CTG)n Simple_repeat Simple_repeat 3 49 0 2 616 207 69 0 0 chr3L 4100283 4100312 -20443245 + (CAG)n Simple_repeat Simple_repeat 1 29 0 2 616 228 67 0 0 chr3L 4101573 4101603 -20441954 + (ATGGTG)n Simple_repeat Simple_repeat 4 33 0 2 616 201 186 23 0 chr3L 4103244 4103287 -20440270 + (CAATA)n Simple_repeat Simple_repeat 4 47 0 2 616 24 91 0 0 chr3L 4107044 4107110 -20436447 + AT_rich Low_complexity Low_complexity 1 66 0 2 616 21 82 0 0 chr3L 4108030 4108079 -20435478 + AT_rich Low_complexity Low_complexity 1 49 0 2 616 198 103 0 0 chr3L 4108685 4108714 -20434843 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 616 273 57 0 0 chr3L 4118014 4118049 -20425508 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 616 25 51 0 0 chr3L 4118834 4118873 -20424684 + AT_rich Low_complexity Low_complexity 1 39 0 2 616 233 292 0 15 chr3L 4121823 4121889 -20421668 + (CATA)n Simple_repeat Simple_repeat 1 65 0 2 616 203 292 0 14 chr3L 4125413 4125486 -20418071 + (CTG)n Simple_repeat Simple_repeat 2 73 0 2 616 224 279 0 31 chr3L 4125697 4125793 -20417764 + CT-rich Low_complexity Low_complexity 2 94 0 2 616 203 255 0 0 chr3L 4130741 4130792 -20412765 + A-rich Low_complexity Low_complexity 3 53 0 2 616 243 286 12 12 chr3L 4134208 4134293 -20409264 + CT-rich Low_complexity Low_complexity 2 86 0 2 616 24 67 0 39 chr3L 4136815 4136893 -20406664 + AT_rich Low_complexity Low_complexity 1 75 0 2 616 243 157 0 0 chr3L 4139457 4139508 -20404049 + (CAT)n Simple_repeat Simple_repeat 2 52 0 2 616 36 0 0 0 chr3L 4141326 4141362 -20402195 + AT_rich Low_complexity Low_complexity 1 36 0 2 616 185 0 40 0 chr3L 4142872 4142897 -20400660 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2 616 21 36 0 0 chr3L 4142927 4142955 -20400602 + AT_rich Low_complexity Low_complexity 1 28 0 2 616 209 254 15 0 chr3L 4143298 4143365 -20400192 + (CCG)n Simple_repeat Simple_repeat 1 68 0 2 616 29 28 0 0 chr3L 4144326 4144362 -20399195 + AT_rich Low_complexity Low_complexity 1 36 0 2 616 22 0 0 0 chr3L 4147044 4147066 -20396491 + AT_rich Low_complexity Low_complexity 1 22 0 2 616 21 0 0 0 chr3L 4150748 4150769 -20392788 + AT_rich Low_complexity Low_complexity 1 21 0 2 616 25 31 0 0 chr3L 4152434 4152466 -20391091 + AT_rich Low_complexity Low_complexity 1 32 0 2 616 23 78 0 0 chr3L 4153613 4153664 -20389893 + AT_rich Low_complexity Low_complexity 1 51 0 2 616 21 36 0 0 chr3L 4154248 4154276 -20389281 + AT_rich Low_complexity Low_complexity 1 28 0 2 616 207 163 41 0 chr3L 4154284 4154333 -20389224 + (TA)n Simple_repeat Simple_repeat 2 52 0 2 616 21 0 0 0 chr3L 4158517 4158538 -20385019 + AT_rich Low_complexity Low_complexity 1 21 0 2 616 188 143 24 0 chr3L 4158648 4158690 -20384867 + (TG)n Simple_repeat Simple_repeat 1 43 0 2 616 23 0 0 0 chr3L 4161599 4161622 -20381935 + AT_rich Low_complexity Low_complexity 1 23 0 2 616 237 146 0 0 chr3L 4164339 4164387 -20379170 + (TCC)n Simple_repeat Simple_repeat 2 49 0 2 616 276 301 6 24 chr3L 4164967 4165137 -20378420 + (TGG)n Simple_repeat Simple_repeat 3 169 0 2 616 250 111 200 0 chr3L 4166669 4166759 -20376798 + (TTCGG)n Simple_repeat Simple_repeat 3 110 0 2 616 21 36 0 0 chr3L 4169886 4169914 -20373643 + AT_rich Low_complexity Low_complexity 1 28 0 2 616 25 31 0 0 chr3L 4170132 4170164 -20373393 + AT_rich Low_complexity Low_complexity 1 32 0 2 616 22 0 0 0 chr3L 4170278 4170300 -20373257 + AT_rich Low_complexity Low_complexity 1 22 0 2 616 247 265 0 14 chr3L 4170591 4170660 -20372897 + (CAA)n Simple_repeat Simple_repeat 1 68 0 2 616 186 43 0 0 chr3L 4171881 4171904 -20371653 + (A)n Simple_repeat Simple_repeat 1 23 0 2 616 249 146 0 0 chr3L 4178768 4178816 -20364741 + (TA)n Simple_repeat Simple_repeat 1 48 0 2 616 196 30 29 29 chr3L 4182052 4182086 -20361471 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 2 616 284 143 23 23 chr3L 4182298 4182384 -20361173 + (TG)n Simple_repeat Simple_repeat 2 87 0 2 616 191 146 0 24 chr3L 4188584 4188626 -20354931 + (TCG)n Simple_repeat Simple_repeat 3 43 0 2 616 27 0 0 0 chr3L 4190517 4190544 -20353013 + AT_rich Low_complexity Low_complexity 1 27 0 2 616 293 62 0 20 chr3L 4193166 4193215 -20350342 + (TTAAA)n Simple_repeat Simple_repeat 2 49 0 2 617 23 0 0 0 chr3L 4203892 4203915 -20339642 + AT_rich Low_complexity Low_complexity 1 23 0 2 617 241 346 0 19 chr3L 4215764 4215923 -20327634 + (CTG)n Simple_repeat Simple_repeat 2 157 0 2 617 39 0 0 0 chr3L 4219353 4219392 -20324165 + AT_rich Low_complexity Low_complexity 1 39 0 2 617 207 100 0 0 chr3L 4224298 4224328 -20319229 + (ATTG)n Simple_repeat Simple_repeat 1 30 0 2 617 22 56 0 0 chr3L 4224682 4224718 -20318839 + AT_rich Low_complexity Low_complexity 1 36 0 2 617 239 71 24 0 chr3L 4227339 4227381 -20316176 + (CA)n Simple_repeat Simple_repeat 1 43 0 2 617 189 107 0 0 chr3L 4232244 4232272 -20311285 + (TAAAG)n Simple_repeat Simple_repeat 2 29 0 2 617 255 189 0 0 chr3L 4236264 4236317 -20307240 + (CGGA)n Simple_repeat Simple_repeat 2 54 0 2 617 246 32 0 0 chr3L 4236653 4236684 -20306873 + (AAATG)n Simple_repeat Simple_repeat 1 31 0 2 617 270 230 14 0 chr3L 4238061 4238135 -20305422 + (CAGC)n Simple_repeat Simple_repeat 4 78 0 2 617 192 158 0 0 chr3L 4253365 4253403 -20290154 + CT-rich Low_complexity Low_complexity 1 38 0 2 617 31 102 0 0 chr3L 4254508 4254616 -20288941 + AT_rich Low_complexity Low_complexity 1 108 0 2 617 29 47 0 0 chr3L 4262560 4262603 -20280954 + AT_rich Low_complexity Low_complexity 1 43 0 2 617 25 75 0 0 chr3L 4263349 4263402 -20280155 + AT_rich Low_complexity Low_complexity 1 53 0 2 617 183 80 0 0 chr3L 4265901 4265926 -20277631 + (T)n Simple_repeat Simple_repeat 1 25 0 2 617 256 111 0 0 chr3L 4266624 4266660 -20276897 - DNAREP1_DM LINE Penelope -525 69 34 2 617 205 211 0 0 chr3L 4269586 4269624 -20273933 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 617 26 0 0 0 chr3L 4270072 4270098 -20273459 + AT_rich Low_complexity Low_complexity 1 26 0 2 617 25 31 0 0 chr3L 4273024 4273056 -20270501 + AT_rich Low_complexity Low_complexity 1 32 0 2 617 278 303 7 0 chr3L 4275117 4275302 -20268255 + (CTA)n Simple_repeat Simple_repeat 1 186 0 2 617 207 273 0 0 chr3L 4284771 4284815 -20258742 + (CAG)n Simple_repeat Simple_repeat 3 46 0 2 617 29 0 0 0 chr3L 4286932 4286961 -20256596 + AT_rich Low_complexity Low_complexity 1 29 0 2 617 26 30 0 0 chr3L 4294038 4294071 -20249486 + AT_rich Low_complexity Low_complexity 1 33 0 2 617 21 36 0 0 chr3L 4297048 4297076 -20246481 + AT_rich Low_complexity Low_complexity 1 28 0 2 617 198 0 0 0 chr3L 4298606 4298628 -20244929 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 617 192 77 0 0 chr3L 4302417 4302443 -20241114 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 617 26 50 0 0 chr3L 4309844 4309884 -20233673 + AT_rich Low_complexity Low_complexity 1 40 0 2 617 288 299 16 16 chr3L 4310674 4310803 -20232754 - XDMR Unknown Unknown -232 129 1 2 617 22 35 0 0 chr3L 4310833 4310862 -20232695 + AT_rich Low_complexity Low_complexity 1 29 0 2 617 55 60 0 36 chr3L 4313219 4313357 -20230200 + AT_rich Low_complexity Low_complexity 1 133 0 2 617 23 33 0 0 chr3L 4322422 4322452 -20221105 + AT_rich Low_complexity Low_complexity 1 30 0 2 618 4392 10 0 0 chr3L 4328786 4329267 -20214290 + T412LTR LTR LTR 1 481 0 2 618 45655 1 0 1 chr3L 4328953 4335856 -20207701 + DM412 LTR Gypsy 1 6897 0 2 618 4106 12 0 0 chr3L 4335746 4336227 -20207330 + T412LTR LTR LTR 1 481 0 2 618 227 31 31 0 chr3L 4340222 4340254 -20203303 + (CGAT)n Simple_repeat Simple_repeat 4 36 0 2 618 321 100 0 0 chr3L 4340735 4340785 -20202772 + (CAT)n Simple_repeat Simple_repeat 1 50 0 2 618 287 286 19 9 chr3L 4342940 4343046 -20200511 + ROO_I LTR Pao 633 739 -7517 2 618 28 0 0 0 chr3L 4345709 4345737 -20197820 + AT_rich Low_complexity Low_complexity 1 28 0 2 618 202 246 16 0 chr3L 4351439 4351500 -20192057 + (TA)n Simple_repeat Simple_repeat 2 63 0 2 618 28 0 0 0 chr3L 4353650 4353678 -20189879 + AT_rich Low_complexity Low_complexity 1 28 0 2 618 22 35 0 0 chr3L 4355524 4355553 -20188004 + AT_rich Low_complexity Low_complexity 1 29 0 2 618 209 108 0 26 chr3L 4357388 4357426 -20186131 + (GGAAA)n Simple_repeat Simple_repeat 1 37 0 2 618 201 211 0 0 chr3L 4359829 4359881 -20183676 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 618 189 0 0 0 chr3L 4360223 4360244 -20183313 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2 618 203 194 0 0 chr3L 4360360 4360396 -20183161 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 618 4751 26 3 49 chr3L 4361047 4361724 -20181833 + FB4_DM DNA Tc1 1 646 -3443 2 618 4751 26 3 49 chr3L 4362156 4362833 -20180724 - FB4_DM DNA Tc1 -3443 646 1 2 618 198 103 0 0 chr3L 4363133 4363162 -20180395 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2 618 206 159 23 0 chr3L 4363632 4363676 -20179881 + GA-rich Low_complexity Low_complexity 2 46 0 2 618 26 0 0 0 chr3L 4364215 4364241 -20179316 + AT_rich Low_complexity Low_complexity 1 26 0 2 618 200 86 0 28 chr3L 4368679 4368715 -20174842 + (CAAT)n Simple_repeat Simple_repeat 4 38 0 2 618 234 214 0 0 chr3L 4370979 4371068 -20172489 + (TG)n Simple_repeat Simple_repeat 2 90 0 2 618 25 65 0 0 chr3L 4373666 4373712 -20169845 + AT_rich Low_complexity Low_complexity 1 46 0 2 618 186 118 0 0 chr3L 4374061 4374095 -20169462 + (TA)n Simple_repeat Simple_repeat 1 34 0 2 618 180 0 0 0 chr3L 4375315 4375335 -20168222 + (GA)n Simple_repeat Simple_repeat 2 21 0 2 618 191 88 29 0 chr3L 4375696 4375730 -20167827 + (CA)n Simple_repeat Simple_repeat 2 36 0 2 618 21 36 0 0 chr3L 4376113 4376141 -20167416 + AT_rich Low_complexity Low_complexity 1 28 0 2 618 24 32 0 0 chr3L 4379166 4379197 -20164360 + AT_rich Low_complexity Low_complexity 1 31 0 2 618 232 111 18 18 chr3L 4380224 4380279 -20163278 + (TG)n Simple_repeat Simple_repeat 1 55 0 2 618 25 0 0 0 chr3L 4385453 4385478 -20158079 + AT_rich Low_complexity Low_complexity 1 25 0 2 618 189 0 0 0 chr3L 4388785 4388806 -20154751 + (T)n Simple_repeat Simple_repeat 1 21 0 2 618 27 0 0 0 chr3L 4395811 4395838 -20147719 + AT_rich Low_complexity Low_complexity 1 27 0 2 618 22 35 0 0 chr3L 4398499 4398528 -20145029 + AT_rich Low_complexity Low_complexity 1 29 0 2 618 301 223 0 41 chr3L 4400733 4400831 -20142726 + ROO_I LTR Pao 632 725 -7531 2 618 243 61 0 0 chr3L 4401636 4401669 -20141888 + (CAATC)n Simple_repeat Simple_repeat 4 36 0 2 618 202 333 11 0 chr3L 4406457 4406547 -20137010 + T-rich Low_complexity Low_complexity 1 91 0 2 618 333 100 0 0 chr3L 4410952 4411002 -20132555 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 618 40 21 0 0 chr3L 4412600 4412647 -20130910 + AT_rich Low_complexity Low_complexity 1 47 0 2 618 24 0 0 0 chr3L 4412683 4412707 -20130850 + AT_rich Low_complexity Low_complexity 1 24 0 2 618 399 267 49 38 chr3L 4413402 4413667 -20129890 + SAR_DM Satellite Satellite 247 514 -958 2 618 21 57 0 0 chr3L 4413696 4413731 -20129826 + AT_rich Low_complexity Low_complexity 1 35 0 2 618 216 67 0 0 chr3L 4414726 4414756 -20128801 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 618 203 200 0 18 chr3L 4420668 4420724 -20122833 + A-rich Low_complexity Low_complexity 3 57 0 2 618 186 103 0 0 chr3L 4422871 4422900 -20120657 + (A)n Simple_repeat Simple_repeat 1 29 0 2 618 22 35 0 0 chr3L 4425397 4425426 -20118131 + AT_rich Low_complexity Low_complexity 1 29 0 2 618 46 19 0 0 chr3L 4428264 4428317 -20115240 + AT_rich Low_complexity Low_complexity 1 53 0 2 618 195 42 0 0 chr3L 4430229 4430253 -20113304 + (A)n Simple_repeat Simple_repeat 1 24 0 2 618 180 0 0 0 chr3L 4430309 4430329 -20113228 + (TA)n Simple_repeat Simple_repeat 1 20 0 2 618 267 114 0 0 chr3L 4430465 4430509 -20113048 + (TC)n Simple_repeat Simple_repeat 1 44 0 2 618 222 200 0 0 chr3L 4430690 4430740 -20112817 + CT-rich Low_complexity Low_complexity 1 50 0 2 618 204 229 0 0 chr3L 4431306 4431354 -20112203 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 618 217 125 18 18 chr3L 4432060 4432117 -20111440 + CT-rich Low_complexity Low_complexity 2 58 0 2 618 252 59 0 0 chr3L 4432974 4433008 -20110549 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 2 618 273 125 0 0 chr3L 4433164 4433220 -20110337 + (CCAA)n Simple_repeat Simple_repeat 3 58 0 2 618 209 171 0 0 chr3L 4436539 4436574 -20106983 + (CGA)n Simple_repeat Simple_repeat 3 37 0 2 618 246 322 0 0 chr3L 4437164 4437335 -20106222 + CT-rich Low_complexity Low_complexity 1 171 0 2 618 286 309 5 38 chr3L 4437318 4437503 -20106054 + (CCA)n Simple_repeat Simple_repeat 2 180 0 2 618 215 320 7 7 chr3L 4437611 4437759 -20105798 + (CCA)n Simple_repeat Simple_repeat 1 148 0 2 618 426 20 0 0 chr3L 4438773 4438824 -20104733 + (TA)n Simple_repeat Simple_repeat 1 51 0 2 618 25 31 0 0 chr3L 4440799 4440831 -20102726 + AT_rich Low_complexity Low_complexity 1 32 0 2 618 21 0 0 0 chr3L 4441539 4441560 -20101997 + AT_rich Low_complexity Low_complexity 1 21 0 2 618 21 0 0 0 chr3L 4442822 4442843 -20100714 + AT_rich Low_complexity Low_complexity 1 21 0 2 618 213 121 0 0 chr3L 4448841 4448874 -20094683 + (CACTC)n Simple_repeat Simple_repeat 4 36 0 2 618 7381 4 0 0 chr3L 4450223 4451016 -20092541 + BS2 LINE Jockey 11 803 -3918 2 77 43920 2 0 0 chr3L 4451976 4456687 -20086870 + BS2 LINE Jockey 11 4721 0 2 619 213 180 0 0 chr3L 4460032 4460082 -20083475 + (ATGGTG)n Simple_repeat Simple_repeat 5 54 0 2 619 224 131 0 21 chr3L 4460851 4460898 -20082659 + (TGG)n Simple_repeat Simple_repeat 3 48 0 2 619 320 323 12 19 chr3L 4460911 4461072 -20082485 + G-rich Low_complexity Low_complexity 6 165 0 2 619 27 29 0 0 chr3L 4463373 4463407 -20080150 + AT_rich Low_complexity Low_complexity 1 34 0 2 619 23 0 0 0 chr3L 4464639 4464662 -20078895 + AT_rich Low_complexity Low_complexity 1 23 0 2 619 192 40 0 0 chr3L 4465610 4465635 -20077922 + (TGG)n Simple_repeat Simple_repeat 2 26 0 2 619 192 40 0 0 chr3L 4465910 4465935 -20077622 + (TGG)n Simple_repeat Simple_repeat 2 26 0 2 619 212 235 30 20 chr3L 4465954 4466054 -20077503 + (TGG)n Simple_repeat Simple_repeat 1 101 0 2 619 348 327 0 36 chr3L 4472076 4472241 -20071316 + C-rich Low_complexity Low_complexity 1 159 0 2 619 23 0 0 0 chr3L 4472623 4472646 -20070911 + AT_rich Low_complexity Low_complexity 1 23 0 2 619 23 54 0 0 chr3L 4476445 4476482 -20067075 + AT_rich Low_complexity Low_complexity 1 37 0 2 619 34 42 0 0 chr3L 4479336 4479384 -20064173 + AT_rich Low_complexity Low_complexity 1 48 0 2 619 204 303 0 73 chr3L 4480865 4480961 -20062596 + C-rich Low_complexity Low_complexity 5 93 0 2 619 30 27 0 0 chr3L 4481663 4481700 -20061857 + AT_rich Low_complexity Low_complexity 1 37 0 2 619 336 267 21 54 chr3L 4483182 4483446 -20060111 + (CTG)n Simple_repeat Simple_repeat 1 255 0 2 619 26 50 0 0 chr3L 4484350 4484390 -20059167 + AT_rich Low_complexity Low_complexity 1 40 0 2 619 22 35 0 0 chr3L 4485268 4485297 -20058260 + AT_rich Low_complexity Low_complexity 1 29 0 2 619 37 23 0 0 chr3L 4488011 4488055 -20055502 + AT_rich Low_complexity Low_complexity 1 44 0 2 619 24 85 0 0 chr3L 4490007 4490066 -20053491 + AT_rich Low_complexity Low_complexity 1 59 0 2 619 27 73 0 0 chr3L 4494884 4494939 -20048618 + AT_rich Low_complexity Low_complexity 1 55 0 2 619 222 192 0 0 chr3L 4499488 4499540 -20044017 + (TTG)n Simple_repeat Simple_repeat 1 52 0 2 619 189 0 0 0 chr3L 4500601 4500622 -20042935 + (TTTC)n Simple_repeat Simple_repeat 1 21 0 2 619 22 0 0 0 chr3L 4505362 4505384 -20038173 + AT_rich Low_complexity Low_complexity 1 22 0 2 619 228 111 0 0 chr3L 4508476 4508512 -20035045 + (CTG)n Simple_repeat Simple_repeat 3 38 0 2 619 212 137 0 19 chr3L 4509816 4509868 -20033689 + T-rich Low_complexity Low_complexity 5 55 0 2 619 28 61 0 0 chr3L 4510367 4510416 -20033141 + AT_rich Low_complexity Low_complexity 1 49 0 2 619 26 0 0 0 chr3L 4510658 4510684 -20032873 + AT_rich Low_complexity Low_complexity 1 26 0 2 619 235 257 0 0 chr3L 4513247 4513317 -20030240 + (TGG)n Simple_repeat Simple_repeat 1 70 0 2 619 385 274 0 0 chr3L 4513995 4514148 -20029409 + (TTG)n Simple_repeat Simple_repeat 1 153 0 2 619 23 54 0 0 chr3L 4518849 4518886 -20024671 + AT_rich Low_complexity Low_complexity 1 37 0 2 619 24 32 0 0 chr3L 4520012 4520043 -20023514 + AT_rich Low_complexity Low_complexity 1 31 0 2 619 28 29 0 0 chr3L 4520129 4520164 -20023393 + AT_rich Low_complexity Low_complexity 1 35 0 2 619 29 0 0 0 chr3L 4520244 4520273 -20023284 + AT_rich Low_complexity Low_complexity 1 29 0 2 619 270 81 0 0 chr3L 4522413 4522450 -20021107 + (GCTG)n Simple_repeat Simple_repeat 2 38 0 2 619 23 0 0 0 chr3L 4523508 4523531 -20020026 + AT_rich Low_complexity Low_complexity 1 23 0 2 619 23 54 0 0 chr3L 4526133 4526170 -20017387 + AT_rich Low_complexity Low_complexity 1 37 0 2 619 25 51 0 0 chr3L 4529252 4529291 -20014266 + AT_rich Low_complexity Low_complexity 1 39 0 2 619 220 167 42 0 chr3L 4531599 4531647 -20011910 + (CATTT)n Simple_repeat Simple_repeat 1 50 0 2 619 23 0 0 0 chr3L 4532364 4532387 -20011170 + AT_rich Low_complexity Low_complexity 1 23 0 2 619 209 205 0 0 chr3L 4533217 4533256 -20010301 + A-rich Low_complexity Low_complexity 3 41 0 2 619 237 132 0 0 chr3L 4533883 4533921 -20009636 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 619 23 33 0 0 chr3L 4541830 4541860 -20001697 + AT_rich Low_complexity Low_complexity 1 30 0 2 619 23 33 0 0 chr3L 4549345 4549375 -19994182 + AT_rich Low_complexity Low_complexity 1 30 0 2 619 27 0 0 0 chr3L 4551968 4551995 -19991562 + AT_rich Low_complexity Low_complexity 1 27 0 2 619 22 56 0 0 chr3L 4553092 4553128 -19990429 + AT_rich Low_complexity Low_complexity 1 36 0 2 619 28 0 0 0 chr3L 4554304 4554332 -19989225 + AT_rich Low_complexity Low_complexity 1 28 0 2 619 28 29 0 0 chr3L 4555509 4555544 -19988013 + AT_rich Low_complexity Low_complexity 1 35 0 2 619 31 26 0 0 chr3L 4556326 4556364 -19987193 + AT_rich Low_complexity Low_complexity 1 38 0 2 619 249 254 0 0 chr3L 4557165 4557224 -19986333 + (CGA)n Simple_repeat Simple_repeat 3 61 0 2 619 240 211 0 0 chr3L 4557894 4557970 -19985587 + (TG)n Simple_repeat Simple_repeat 1 76 0 2 619 189 0 0 0 chr3L 4558542 4558563 -19984994 + (CTG)n Simple_repeat Simple_repeat 2 22 0 2 619 203 105 53 0 chr3L 4564468 4564506 -19979051 + (CCAA)n Simple_repeat Simple_repeat 4 43 0 2 619 198 71 0 0 chr3L 4569630 4569658 -19973899 + (GAGTG)n Simple_repeat Simple_repeat 4 31 0 2 619 198 0 0 0 chr3L 4570869 4570891 -19972666 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 619 256 275 0 0 chr3L 4575514 4575583 -19967974 + (CAG)n Simple_repeat Simple_repeat 1 69 0 2 619 262 220 30 0 chr3L 4575599 4575699 -19967858 + ROO_I LTR Pao 639 741 -7515 2 619 224 100 25 0 chr3L 4576131 4576171 -19967386 + (CAG)n Simple_repeat Simple_repeat 1 41 0 2 619 33 25 0 0 chr3L 4576806 4576846 -19966711 + AT_rich Low_complexity Low_complexity 1 40 0 2 619 233 204 0 0 chr3L 4577320 4577374 -19966183 + (TG)n Simple_repeat Simple_repeat 1 54 0 2 619 24 32 0 0 chr3L 4578907 4578938 -19964619 + AT_rich Low_complexity Low_complexity 1 31 0 2 619 22 0 0 0 chr3L 4579901 4579923 -19963634 + AT_rich Low_complexity Low_complexity 1 22 0 2 619 22 0 0 0 chr3L 4579968 4579990 -19963567 + AT_rich Low_complexity Low_complexity 1 22 0 2 619 25 0 0 0 chr3L 4581274 4581299 -19962258 + AT_rich Low_complexity Low_complexity 1 25 0 2 619 212 171 0 0 chr3L 4582241 4582282 -19961275 + A-rich Low_complexity Low_complexity 1 41 0 2 619 316 270 0 0 chr3L 4582451 4582562 -19960995 + CT-rich Low_complexity Low_complexity 1 111 0 2 619 254 210 45 61 chr3L 4582880 4583012 -19960545 + (TCTA)n Simple_repeat Simple_repeat 2 131 0 2 619 189 0 0 0 chr3L 4586539 4586560 -19956997 + (A)n Simple_repeat Simple_repeat 1 21 0 2 620 25 0 0 0 chr3L 4588449 4588474 -19955083 + AT_rich Low_complexity Low_complexity 1 25 0 2 620 387 207 0 26 chr3L 4590211 4590325 -19953232 + ROO_I LTR Pao 641 751 -7505 2 620 33 25 0 0 chr3L 4591315 4591355 -19952202 + AT_rich Low_complexity Low_complexity 1 40 0 2 620 21 0 0 0 chr3L 4592390 4592411 -19951146 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 22 35 0 0 chr3L 4592986 4593015 -19950542 + AT_rich Low_complexity Low_complexity 1 29 0 2 620 21 57 0 0 chr3L 4593276 4593311 -19950246 + AT_rich Low_complexity Low_complexity 1 35 0 2 620 180 0 0 0 chr3L 4594095 4594115 -19949442 + (GATTG)n Simple_repeat Simple_repeat 1 20 0 2 620 199 146 18 18 chr3L 4594522 4594578 -19948979 + (TA)n Simple_repeat Simple_repeat 2 57 0 2 620 210 150 0 0 chr3L 4597647 4597687 -19945870 + (GCTG)n Simple_repeat Simple_repeat 1 40 0 2 620 180 152 0 0 chr3L 4598501 4598534 -19945023 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 620 210 37 0 0 chr3L 4602174 4602201 -19941356 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 620 31 26 0 0 chr3L 4603642 4603680 -19939877 + AT_rich Low_complexity Low_complexity 1 38 0 2 620 27 0 0 0 chr3L 4615461 4615488 -19928069 + AT_rich Low_complexity Low_complexity 1 27 0 2 620 21 36 0 0 chr3L 4618514 4618542 -19925015 + AT_rich Low_complexity Low_complexity 1 28 0 2 620 241 242 0 0 chr3L 4619824 4619886 -19923671 + GA-rich Low_complexity Low_complexity 2 63 0 2 620 180 0 0 0 chr3L 4620309 4620329 -19923228 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 620 205 186 0 0 chr3L 4624399 4624442 -19919115 + A-rich Low_complexity Low_complexity 1 43 0 2 620 38 22 0 0 chr3L 4626607 4626652 -19916905 + AT_rich Low_complexity Low_complexity 1 45 0 2 620 29 60 0 0 chr3L 4629435 4629485 -19914072 + AT_rich Low_complexity Low_complexity 1 50 0 2 620 288 0 0 0 chr3L 4630082 4630114 -19913443 + (CTG)n Simple_repeat Simple_repeat 2 33 0 2 620 22 35 0 0 chr3L 4632634 4632663 -19910894 + AT_rich Low_complexity Low_complexity 1 29 0 2 620 213 94 0 0 chr3L 4633752 4633784 -19909773 + (CA)n Simple_repeat Simple_repeat 2 33 0 2 620 22 56 0 0 chr3L 4634360 4634396 -19909161 + AT_rich Low_complexity Low_complexity 1 36 0 2 620 216 0 0 0 chr3L 4638605 4638629 -19904928 + (CTG)n Simple_repeat Simple_repeat 3 26 0 2 620 189 74 0 0 chr3L 4638812 4638839 -19904718 + (CAG)n Simple_repeat Simple_repeat 2 28 0 2 620 23 33 0 0 chr3L 4639054 4639084 -19904473 + AT_rich Low_complexity Low_complexity 1 30 0 2 620 238 227 15 0 chr3L 4639131 4639197 -19904360 + (TTAA)n Simple_repeat Simple_repeat 2 68 0 2 620 22 56 0 0 chr3L 4642854 4642890 -19900667 + AT_rich Low_complexity Low_complexity 1 36 0 2 620 21 71 0 0 chr3L 4647130 4647172 -19896385 + AT_rich Low_complexity Low_complexity 1 42 0 2 620 29 0 0 0 chr3L 4650281 4650310 -19893247 + AT_rich Low_complexity Low_complexity 1 29 0 2 620 25 51 0 0 chr3L 4655885 4655924 -19887633 + AT_rich Low_complexity Low_complexity 1 39 0 2 620 26 0 0 0 chr3L 4656495 4656521 -19887036 + AT_rich Low_complexity Low_complexity 1 26 0 2 620 31 0 0 0 chr3L 4658019 4658050 -19885507 + AT_rich Low_complexity Low_complexity 1 31 0 2 620 23 33 0 0 chr3L 4658080 4658110 -19885447 + AT_rich Low_complexity Low_complexity 1 30 0 2 620 21 0 0 0 chr3L 4660046 4660067 -19883490 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 183 42 0 0 chr3L 4661508 4661532 -19882025 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 620 208 174 0 21 chr3L 4663839 4663886 -19879671 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 620 204 40 0 0 chr3L 4668727 4668752 -19874805 + (CAG)n Simple_repeat Simple_repeat 3 27 0 2 620 279 0 0 0 chr3L 4671582 4671613 -19871944 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 620 239 164 0 18 chr3L 4672131 4672187 -19871370 - ROO_I LTR Pao -7523 733 679 2 620 186 103 0 0 chr3L 4672660 4672689 -19870868 + (ATG)n Simple_repeat Simple_repeat 1 29 0 2 620 23 54 0 0 chr3L 4674094 4674131 -19869426 + AT_rich Low_complexity Low_complexity 1 37 0 2 620 233 262 15 15 chr3L 4675598 4675664 -19867893 + (CCG)n Simple_repeat Simple_repeat 2 67 0 2 620 207 167 0 0 chr3L 4676540 4676576 -19866981 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 620 215 179 15 0 chr3L 4678768 4678835 -19864722 + (CAA)n Simple_repeat Simple_repeat 3 70 0 2 620 23 33 0 0 chr3L 4679231 4679261 -19864296 + AT_rich Low_complexity Low_complexity 1 30 0 2 620 24 0 0 0 chr3L 4680286 4680310 -19863247 + AT_rich Low_complexity Low_complexity 1 24 0 2 620 23 0 0 0 chr3L 4680999 4681022 -19862535 + AT_rich Low_complexity Low_complexity 1 23 0 2 620 22 56 0 0 chr3L 4681612 4681648 -19861909 + AT_rich Low_complexity Low_complexity 1 36 0 2 620 26 0 0 0 chr3L 4681917 4681943 -19861614 + AT_rich Low_complexity Low_complexity 1 26 0 2 620 27 0 0 0 chr3L 4683284 4683311 -19860246 + AT_rich Low_complexity Low_complexity 1 27 0 2 620 23 0 0 0 chr3L 4683366 4683389 -19860168 + AT_rich Low_complexity Low_complexity 1 23 0 2 620 21 0 0 0 chr3L 4684524 4684545 -19859012 + AT_rich Low_complexity Low_complexity 1 21 0 2 620 44 46 0 0 chr3L 4684636 4684701 -19858856 + AT_rich Low_complexity Low_complexity 1 65 0 2 620 34 65 0 0 chr3L 4685432 4685494 -19858063 + AT_rich Low_complexity Low_complexity 1 62 0 2 620 25 51 0 0 chr3L 4686025 4686064 -19857493 + AT_rich Low_complexity Low_complexity 1 39 0 2 620 26 50 0 0 chr3L 4691999 4692039 -19851518 + AT_rich Low_complexity Low_complexity 1 40 0 2 620 22 35 0 0 chr3L 4694206 4694235 -19849322 + AT_rich Low_complexity Low_complexity 1 29 0 2 620 27 0 0 0 chr3L 4695305 4695332 -19848225 + AT_rich Low_complexity Low_complexity 1 27 0 2 620 21 100 0 0 chr3L 4695383 4695453 -19848104 + AT_rich Low_complexity Low_complexity 1 70 0 2 620 26 50 0 0 chr3L 4698494 4698534 -19845023 + AT_rich Low_complexity Low_complexity 1 40 0 2 620 284 143 18 0 chr3L 4700817 4700873 -19842684 + (TA)n Simple_repeat Simple_repeat 2 58 0 2 620 24 0 0 0 chr3L 4700930 4700954 -19842603 + AT_rich Low_complexity Low_complexity 1 24 0 2 620 261 208 0 49 chr3L 4701685 4701766 -19841791 - ROO_I LTR Pao -7528 728 652 2 620 23 33 0 0 chr3L 4702092 4702122 -19841435 + AT_rich Low_complexity Low_complexity 1 30 0 2 620 228 122 0 0 chr3L 4705428 4705469 -19838088 + (CAG)n Simple_repeat Simple_repeat 3 43 0 2 620 271 256 0 49 chr3L 4716659 4716741 -19826816 + (TTCA)n Simple_repeat Simple_repeat 1 78 0 2 621 189 0 0 0 chr3L 4719732 4719753 -19823804 + (TCC)n Simple_repeat Simple_repeat 3 23 0 2 621 297 109 0 0 chr3L 4720072 4720118 -19823439 + (CAT)n Simple_repeat Simple_repeat 3 48 0 2 621 26 30 0 0 chr3L 4721397 4721430 -19822127 + AT_rich Low_complexity Low_complexity 1 33 0 2 621 27 0 0 0 chr3L 4725877 4725904 -19817653 + AT_rich Low_complexity Low_complexity 1 27 0 2 621 23 0 0 0 chr3L 4726095 4726118 -19817439 + AT_rich Low_complexity Low_complexity 1 23 0 2 621 228 220 0 0 chr3L 4726758 4726808 -19816749 + (TG)n Simple_repeat Simple_repeat 1 50 0 2 621 213 154 0 0 chr3L 4726998 4727037 -19816520 + A-rich Low_complexity Low_complexity 1 39 0 2 621 23 0 0 0 chr3L 4727615 4727638 -19815919 + AT_rich Low_complexity Low_complexity 1 23 0 2 621 231 175 0 0 chr3L 4729196 4729253 -19814304 + (CTGGGG)n Simple_repeat Simple_repeat 4 60 0 2 621 24 0 0 0 chr3L 4729514 4729538 -19814019 + AT_rich Low_complexity Low_complexity 1 24 0 2 621 262 194 0 0 chr3L 4729965 4730027 -19813530 + ROO_I LTR Pao 652 713 -7543 2 621 180 0 0 0 chr3L 4730217 4730237 -19813320 + (CAG)n Simple_repeat Simple_repeat 1 20 0 2 621 264 244 12 12 chr3L 4731732 4731815 -19811742 + ROO_I LTR Pao 647 729 -7527 2 621 27 49 0 0 chr3L 4733296 4733337 -19810220 + AT_rich Low_complexity Low_complexity 1 41 0 2 621 186 103 0 0 chr3L 4734735 4734764 -19808793 + (TA)n Simple_repeat Simple_repeat 2 30 0 2 621 23 33 0 0 chr3L 4735377 4735407 -19808150 + AT_rich Low_complexity Low_complexity 1 30 0 2 621 207 69 0 0 chr3L 4748110 4748139 -19795418 + (ATG)n Simple_repeat Simple_repeat 3 31 0 2 621 230 231 0 15 chr3L 4748531 4748597 -19794960 + (CATCC)n Simple_repeat Simple_repeat 3 67 0 2 621 23 68 0 0 chr3L 4749999 4750043 -19793514 + AT_rich Low_complexity Low_complexity 1 44 0 2 621 21 36 0 0 chr3L 4750930 4750958 -19792599 + AT_rich Low_complexity Low_complexity 1 28 0 2 621 276 100 0 0 chr3L 4751281 4751321 -19792236 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 621 21 0 0 0 chr3L 4753415 4753436 -19790121 + AT_rich Low_complexity Low_complexity 1 21 0 2 621 23 33 0 0 chr3L 4754897 4754927 -19788630 + AT_rich Low_complexity Low_complexity 1 30 0 2 621 26 64 0 0 chr3L 4761458 4761505 -19782052 + AT_rich Low_complexity Low_complexity 1 47 0 2 621 22 0 0 0 chr3L 4764772 4764794 -19778763 + AT_rich Low_complexity Low_complexity 1 22 0 2 621 341 191 0 0 chr3L 4765009 4765098 -19778459 + ROO_I LTR Pao 641 729 -7527 2 621 198 215 0 0 chr3L 4766188 4766267 -19777290 + (CAG)n Simple_repeat Simple_repeat 3 81 0 2 621 281 161 49 0 chr3L 4766756 4766837 -19776720 + ROO_I LTR Pao 659 743 -7513 2 621 205 196 20 0 chr3L 4767821 4767872 -19775685 + (CCCA)n Simple_repeat Simple_repeat 2 53 0 2 621 216 0 0 0 chr3L 4768760 4768784 -19774773 + (GGA)n Simple_repeat Simple_repeat 2 25 0 2 621 24 0 0 0 chr3L 4769032 4769056 -19774501 + AT_rich Low_complexity Low_complexity 1 24 0 2 621 269 286 0 12 chr3L 4770170 4770255 -19773302 + ROO_I LTR Pao 656 739 -7517 2 621 294 157 29 0 chr3L 4770364 4770434 -19773123 - ROO_I LTR Pao -7528 728 657 2 621 330 123 0 0 chr3L 4773268 4773325 -19770232 + (CAGT)n Simple_repeat Simple_repeat 3 59 0 2 621 6076 1 0 0 chr3L 4773710 4774361 -19769196 - DMRT1A LINE R1 -7 5176 4526 2 621 240 111 0 0 chr3L 4774364 4774400 -19769157 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 621 27 0 0 0 chr3L 4778856 4778883 -19764674 + AT_rich Low_complexity Low_complexity 1 27 0 2 621 22 0 0 0 chr3L 4781682 4781704 -19761853 + AT_rich Low_complexity Low_complexity 1 22 0 2 621 23 0 0 0 chr3L 4782633 4782656 -19760901 + AT_rich Low_complexity Low_complexity 1 23 0 2 621 34 24 0 0 chr3L 4787200 4787241 -19756316 + AT_rich Low_complexity Low_complexity 1 41 0 2 621 26 50 0 0 chr3L 4788733 4788773 -19754784 + AT_rich Low_complexity Low_complexity 1 40 0 2 621 210 118 0 0 chr3L 4789185 4789219 -19754338 + (CAG)n Simple_repeat Simple_repeat 2 35 0 2 621 197 119 24 0 chr3L 4793877 4793919 -19749638 + (CAA)n Simple_repeat Simple_repeat 2 44 0 2 621 23 33 0 0 chr3L 4796901 4796931 -19746626 + AT_rich Low_complexity Low_complexity 1 30 0 2 621 237 108 0 0 chr3L 4800196 4800233 -19743324 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 621 191 103 0 25 chr3L 4800344 4800384 -19743173 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 2 621 24 32 0 0 chr3L 4803068 4803099 -19740458 + AT_rich Low_complexity Low_complexity 1 31 0 2 621 21 82 0 0 chr3L 4824949 4824998 -19718559 + AT_rich Low_complexity Low_complexity 1 49 0 2 621 189 74 0 0 chr3L 4832925 4832952 -19710605 + (TTG)n Simple_repeat Simple_repeat 3 29 0 2 621 216 97 0 0 chr3L 4834162 4834193 -19709364 + (CAGGC)n Simple_repeat Simple_repeat 1 31 0 2 621 282 56 0 0 chr3L 4834860 4834896 -19708661 + (GCTG)n Simple_repeat Simple_repeat 2 37 0 2 621 23 68 0 0 chr3L 4841427 4841471 -19702086 + AT_rich Low_complexity Low_complexity 1 44 0 2 621 198 0 0 0 chr3L 4843127 4843149 -19700408 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 621 24 67 0 0 chr3L 4843366 4843411 -19700146 + AT_rich Low_complexity Low_complexity 1 45 0 2 622 26 0 0 0 chr3L 4852772 4852798 -19690759 + AT_rich Low_complexity Low_complexity 1 26 0 2 622 215 203 17 0 chr3L 4854980 4855039 -19688518 + (TCG)n Simple_repeat Simple_repeat 2 61 0 2 622 22 0 0 0 chr3L 4855946 4855968 -19687589 + AT_rich Low_complexity Low_complexity 1 22 0 2 622 189 0 0 0 chr3L 4857270 4857291 -19686266 + (A)n Simple_repeat Simple_repeat 1 21 0 2 622 21 36 0 0 chr3L 4862656 4862684 -19680873 + AT_rich Low_complexity Low_complexity 1 28 0 2 622 25 31 0 0 chr3L 4863686 4863718 -19679839 + AT_rich Low_complexity Low_complexity 1 32 0 2 622 256 196 89 0 chr3L 4864748 4864804 -19678753 + PENELOPE LINE Penelope 3925 3985 -176 2 622 22 0 0 0 chr3L 4866437 4866459 -19677098 + AT_rich Low_complexity Low_complexity 1 22 0 2 622 22 0 0 0 chr3L 4867930 4867952 -19675605 + AT_rich Low_complexity Low_complexity 1 22 0 2 622 234 208 0 0 chr3L 4869878 4869931 -19673626 + (TCTG)n Simple_repeat Simple_repeat 3 55 0 2 622 223 231 0 0 chr3L 4876397 4876449 -19667108 + (CACCAT)n Simple_repeat Simple_repeat 3 54 0 2 622 204 40 0 0 chr3L 4878829 4878854 -19664703 + (TG)n Simple_repeat Simple_repeat 1 25 0 2 622 213 39 0 0 chr3L 4879741 4879767 -19663790 + (CTTTG)n Simple_repeat Simple_repeat 5 30 0 2 622 21 36 0 0 chr3L 4880245 4880273 -19663284 + AT_rich Low_complexity Low_complexity 1 28 0 2 622 22 35 0 0 chr3L 4884225 4884254 -19659303 + AT_rich Low_complexity Low_complexity 1 29 0 2 622 22 56 0 0 chr3L 4884347 4884383 -19659174 + AT_rich Low_complexity Low_complexity 1 36 0 2 622 226 263 0 0 chr3L 4890643 4890719 -19652838 + (CTG)n Simple_repeat Simple_repeat 1 76 0 2 622 23 33 0 0 chr3L 4894387 4894417 -19649140 + AT_rich Low_complexity Low_complexity 1 30 0 2 622 22 0 0 0 chr3L 4896142 4896164 -19647393 + AT_rich Low_complexity Low_complexity 1 22 0 2 622 25 0 0 0 chr3L 4898588 4898613 -19644944 + AT_rich Low_complexity Low_complexity 1 25 0 2 622 26 50 0 0 chr3L 4899817 4899857 -19643700 + AT_rich Low_complexity Low_complexity 1 40 0 2 622 1987 13 0 0 chr3L 4901182 4901406 -19642151 + DIVER_LTR LTR Pao 1 224 0 2 622 52656 3 0 0 chr3L 4901427 4907069 -19636488 + DIVER_I LTR Pao 1 5643 0 2 622 1987 13 0 0 chr3L 4907069 4907293 -19636264 + DIVER_LTR LTR Pao 1 224 0 2 622 34 55 0 0 chr3L 4908042 4908097 -19635460 + AT_rich Low_complexity Low_complexity 1 55 0 2 622 207 167 0 0 chr3L 4910026 4910068 -19633489 + (CCGAA)n Simple_repeat Simple_repeat 4 45 0 2 622 21 36 0 0 chr3L 4911442 4911470 -19632087 + AT_rich Low_complexity Low_complexity 1 28 0 2 622 237 83 0 0 chr3L 4912228 4912264 -19631293 + (CCGAA)n Simple_repeat Simple_repeat 1 36 0 2 622 35 0 0 0 chr3L 4913133 4913168 -19630389 + AT_rich Low_complexity Low_complexity 1 35 0 2 622 37 52 0 0 chr3L 4913629 4913687 -19629870 + AT_rich Low_complexity Low_complexity 1 58 0 2 622 185 65 0 31 chr3L 4914414 4914446 -19629111 + (CAGTC)n Simple_repeat Simple_repeat 3 33 0 2 622 195 129 0 0 chr3L 4917700 4917731 -19625826 + (A)n Simple_repeat Simple_repeat 1 31 0 2 622 25 31 0 0 chr3L 4918941 4918973 -19624584 + AT_rich Low_complexity Low_complexity 1 32 0 2 622 21 57 0 0 chr3L 4920204 4920239 -19623318 + AT_rich Low_complexity Low_complexity 1 35 0 2 622 22 35 0 0 chr3L 4922706 4922735 -19620822 + AT_rich Low_complexity Low_complexity 1 29 0 2 622 27 49 0 0 chr3L 4929298 4929339 -19614218 + AT_rich Low_complexity Low_complexity 1 41 0 2 622 225 160 0 39 chr3L 4929731 4929783 -19613774 + (CTCA)n Simple_repeat Simple_repeat 1 50 0 2 622 22 0 0 0 chr3L 4929922 4929944 -19613613 + AT_rich Low_complexity Low_complexity 1 22 0 2 622 28 0 0 0 chr3L 4931148 4931176 -19612381 + AT_rich Low_complexity Low_complexity 1 28 0 2 622 25 31 0 0 chr3L 4931685 4931717 -19611840 + AT_rich Low_complexity Low_complexity 1 32 0 2 622 547 294 27 17 chr3L 4934656 4934953 -19608604 - SAR_DM Satellite Satellite -953 519 220 2 622 183 129 0 0 chr3L 4936020 4936051 -19607506 + (CATA)n Simple_repeat Simple_repeat 1 31 0 2 622 21 36 0 0 chr3L 4936754 4936782 -19606775 + AT_rich Low_complexity Low_complexity 1 28 0 2 622 30 0 0 0 chr3L 4937562 4937592 -19605965 + AT_rich Low_complexity Low_complexity 1 30 0 2 622 188 111 0 27 chr3L 4938406 4938443 -19605114 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 2 622 23 0 0 0 chr3L 4938616 4938639 -19604918 + AT_rich Low_complexity Low_complexity 1 23 0 2 622 21 36 0 0 chr3L 4941782 4941810 -19601747 + AT_rich Low_complexity Low_complexity 1 28 0 2 622 21 0 0 0 chr3L 4943000 4943021 -19600536 + AT_rich Low_complexity Low_complexity 1 21 0 2 622 183 162 0 0 chr3L 4948121 4948158 -19595399 + (CGAAA)n Simple_repeat Simple_repeat 3 39 0 2 622 21 0 0 0 chr3L 4957764 4957785 -19585772 + AT_rich Low_complexity Low_complexity 1 21 0 2 622 233 261 22 33 chr3L 4959415 4959506 -19584051 + ROO_I LTR Pao 659 748 -7508 2 622 231 317 15 38 chr3L 4959868 4959999 -19583558 + (CAG)n Simple_repeat Simple_repeat 3 130 0 2 622 278 193 45 0 chr3L 4960262 4960350 -19583207 + ROO_I LTR Pao 629 720 -7536 2 622 288 0 0 0 chr3L 4960587 4960619 -19582938 + (GA)n Simple_repeat Simple_repeat 2 33 0 2 622 210 154 0 0 chr3L 4960902 4960941 -19582616 + (CAT)n Simple_repeat Simple_repeat 1 39 0 2 622 213 196 0 73 chr3L 4962578 4962633 -19580924 + T-rich Low_complexity Low_complexity 1 51 0 2 622 21 0 0 0 chr3L 4965245 4965266 -19578291 + AT_rich Low_complexity Low_complexity 1 21 0 2 622 226 250 40 40 chr3L 4966751 4966851 -19576706 + A-rich Low_complexity Low_complexity 5 104 0 2 622 30 45 0 0 chr3L 4967003 4967047 -19576510 + AT_rich Low_complexity Low_complexity 1 44 0 2 622 291 85 0 0 chr3L 4967852 4967899 -19575658 + (CA)n Simple_repeat Simple_repeat 1 47 0 2 622 22 56 0 0 chr3L 4969791 4969827 -19573730 + AT_rich Low_complexity Low_complexity 1 36 0 2 622 22 0 0 0 chr3L 4971155 4971177 -19572380 + AT_rich Low_complexity Low_complexity 1 22 0 2 622 246 62 0 0 chr3L 4974949 4974981 -19568576 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2 622 22 35 0 0 chr3L 4977882 4977911 -19565646 + AT_rich Low_complexity Low_complexity 1 29 0 2 622 24 0 0 0 chr3L 4978440 4978464 -19565093 + AT_rich Low_complexity Low_complexity 1 24 0 2 623 25 31 0 0 chr3L 4990181 4990213 -19553344 + AT_rich Low_complexity Low_complexity 1 32 0 2 623 21 0 0 0 chr3L 4992222 4992243 -19551314 + AT_rich Low_complexity Low_complexity 1 21 0 2 623 24 67 0 0 chr3L 4992431 4992476 -19551081 + AT_rich Low_complexity Low_complexity 1 45 0 2 623 195 100 0 0 chr3L 4993498 4993528 -19550029 + (T)n Simple_repeat Simple_repeat 1 30 0 2 623 213 108 0 0 chr3L 4998534 4998571 -19544986 + (TTGG)n Simple_repeat Simple_repeat 4 40 0 2 623 189 0 0 0 chr3L 4999729 4999750 -19543807 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 623 23 0 0 0 chr3L 5000389 5000412 -19543145 + AT_rich Low_complexity Low_complexity 1 23 0 2 623 194 105 26 0 chr3L 5000554 5000592 -19542965 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 623 26 0 0 0 chr3L 5001067 5001093 -19542464 + AT_rich Low_complexity Low_complexity 1 26 0 2 623 21 36 0 0 chr3L 5003808 5003836 -19539721 + AT_rich Low_complexity Low_complexity 1 28 0 2 623 21 0 0 0 chr3L 5005935 5005956 -19537601 + AT_rich Low_complexity Low_complexity 1 21 0 2 623 189 0 0 0 chr3L 5006181 5006202 -19537355 + (A)n Simple_repeat Simple_repeat 1 21 0 2 623 33 0 0 0 chr3L 5006628 5006661 -19536896 + AT_rich Low_complexity Low_complexity 1 33 0 2 623 30 0 0 0 chr3L 5010455 5010485 -19533072 + AT_rich Low_complexity Low_complexity 1 30 0 2 623 24 0 0 0 chr3L 5011749 5011773 -19531784 + AT_rich Low_complexity Low_complexity 1 24 0 2 623 23 0 0 0 chr3L 5012786 5012809 -19530748 + AT_rich Low_complexity Low_complexity 1 23 0 2 623 299 319 0 8 chr3L 5013852 5013969 -19529588 + (TG)n Simple_repeat Simple_repeat 2 117 0 2 623 24 0 0 0 chr3L 5018952 5018976 -19524581 + AT_rich Low_complexity Low_complexity 1 24 0 2 623 23 0 0 0 chr3L 5020698 5020721 -19522836 + AT_rich Low_complexity Low_complexity 1 23 0 2 623 186 43 0 0 chr3L 5021478 5021501 -19522056 + (CGAAG)n Simple_repeat Simple_repeat 4 26 0 2 623 210 282 0 13 chr3L 5022122 5022201 -19521356 + (CCCA)n Simple_repeat Simple_repeat 1 78 0 2 623 205 195 0 0 chr3L 5024172 5024213 -19519344 + A-rich Low_complexity Low_complexity 1 41 0 2 623 180 97 0 0 chr3L 5024544 5024575 -19518982 + (T)n Simple_repeat Simple_repeat 1 31 0 2 623 266 73 0 24 chr3L 5026913 5026955 -19516602 + (GGATG)n Simple_repeat Simple_repeat 3 43 0 2 623 21 71 0 0 chr3L 5027118 5027160 -19516397 + AT_rich Low_complexity Low_complexity 1 42 0 2 623 207 211 18 0 chr3L 5027408 5027465 -19516092 + (TG)n Simple_repeat Simple_repeat 1 58 0 2 623 456 106 0 0 chr3L 5029267 5029333 -19514224 - DNAREP1_DM LINE Penelope 0 594 529 2 623 277 213 0 32 chr3L 5029434 5029497 -19514060 - DNAREP1_DM LINE Penelope -533 61 1 2 623 31 26 0 0 chr3L 5033392 5033430 -19510127 + AT_rich Low_complexity Low_complexity 1 38 0 2 623 3999 2 0 0 chr3L 5034213 5034641 -19508916 - ROO_LTR LTR Pao 0 428 1 2 623 75088 1 2 0 chr3L 5034641 5042879 -19500678 - ROO_I LTR Pao 0 8256 1 2 623 3999 2 0 0 chr3L 5042879 5043307 -19500250 - ROO_LTR LTR Pao 0 428 1 2 623 25 0 0 0 chr3L 5043816 5043841 -19499716 + AT_rich Low_complexity Low_complexity 1 25 0 2 623 43600 1 0 0 chr3L 5045510 5050232 -19493325 + DOC LINE Jockey 4 4725 0 2 623 204 205 0 0 chr3L 5052161 5052200 -19491357 + (CACTC)n Simple_repeat Simple_repeat 3 41 0 2 623 24 0 0 0 chr3L 5052439 5052463 -19491094 + AT_rich Low_complexity Low_complexity 1 24 0 2 623 189 94 0 0 chr3L 5053370 5053402 -19490155 + (CGA)n Simple_repeat Simple_repeat 2 33 0 2 623 194 23 93 0 chr3L 5054852 5054895 -19488662 + (TCCTG)n Simple_repeat Simple_repeat 1 47 0 2 623 195 69 0 0 chr3L 5056187 5056216 -19487341 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 623 21 36 0 0 chr3L 5057997 5058025 -19485532 + AT_rich Low_complexity Low_complexity 1 28 0 2 623 216 67 0 0 chr3L 5059156 5059186 -19484371 + (CA)n Simple_repeat Simple_repeat 1 30 0 2 623 387 175 138 0 chr3L 5059625 5059705 -19483852 + DNAREP1_DM LINE Penelope 504 594 0 2 623 36 40 0 0 chr3L 5060726 5060776 -19482781 + AT_rich Low_complexity Low_complexity 1 50 0 2 623 26 0 0 0 chr3L 5060826 5060852 -19482705 + AT_rich Low_complexity Low_complexity 1 26 0 2 623 26 0 0 0 chr3L 5062159 5062185 -19481372 + AT_rich Low_complexity Low_complexity 1 26 0 2 623 255 114 0 0 chr3L 5064473 5064517 -19479040 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2 623 21 0 0 0 chr3L 5064675 5064696 -19478861 + AT_rich Low_complexity Low_complexity 1 21 0 2 623 25 0 0 0 chr3L 5064839 5064864 -19478693 + AT_rich Low_complexity Low_complexity 1 25 0 2 623 188 34 0 33 chr3L 5065872 5065902 -19477655 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 2 623 29 47 0 0 chr3L 5066267 5066310 -19477247 + AT_rich Low_complexity Low_complexity 1 43 0 2 623 189 74 0 0 chr3L 5067552 5067579 -19475978 + (CAG)n Simple_repeat Simple_repeat 1 27 0 2 623 182 118 0 29 chr3L 5067671 5067706 -19475851 + (GGAGAA)n Simple_repeat Simple_repeat 2 35 0 2 623 23 33 0 0 chr3L 5069245 5069275 -19474282 + AT_rich Low_complexity Low_complexity 1 30 0 2 623 195 69 0 0 chr3L 5069434 5069463 -19474094 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 623 26 50 0 0 chr3L 5071105 5071145 -19472412 + AT_rich Low_complexity Low_complexity 1 40 0 2 623 201 167 0 0 chr3L 5071544 5071580 -19471977 + (TA)n Simple_repeat Simple_repeat 1 36 0 2 623 33 66 0 0 chr3L 5072471 5072532 -19471025 + AT_rich Low_complexity Low_complexity 1 61 0 2 623 23 0 0 0 chr3L 5078458 5078481 -19465076 + AT_rich Low_complexity Low_complexity 1 23 0 2 623 36 40 0 0 chr3L 5079846 5079896 -19463661 + AT_rich Low_complexity Low_complexity 1 50 0 2 623 23 0 0 0 chr3L 5083272 5083295 -19460262 + AT_rich Low_complexity Low_complexity 1 23 0 2 623 203 194 0 0 chr3L 5085996 5086032 -19457525 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 623 231 88 0 0 chr3L 5086196 5086230 -19457327 + (TTG)n Simple_repeat Simple_repeat 3 36 0 2 623 27 49 0 0 chr3L 5088320 5088361 -19455196 + AT_rich Low_complexity Low_complexity 1 41 0 2 623 21 0 0 0 chr3L 5090532 5090553 -19453004 + AT_rich Low_complexity Low_complexity 1 21 0 2 623 245 247 11 34 chr3L 5093283 5093371 -19450186 + (TTG)n Simple_repeat Simple_repeat 2 87 0 2 623 183 100 0 0 chr3L 5093393 5093423 -19450134 + (T)n Simple_repeat Simple_repeat 1 30 0 2 623 222 184 0 0 chr3L 5094774 5094812 -19448745 + (CAG)n Simple_repeat Simple_repeat 1 38 0 2 623 186 103 0 0 chr3L 5094911 5094940 -19448617 + (CTG)n Simple_repeat Simple_repeat 2 30 0 2 623 209 239 28 14 chr3L 5097385 5097457 -19446100 + (TG)n Simple_repeat Simple_repeat 2 74 0 2 623 222 298 0 21 chr3L 5098621 5098717 -19444840 + (CTG)n Simple_repeat Simple_repeat 2 95 0 2 623 23 0 0 0 chr3L 5101074 5101097 -19442460 + AT_rich Low_complexity Low_complexity 1 23 0 2 623 21 57 0 0 chr3L 5102348 5102383 -19441174 + AT_rich Low_complexity Low_complexity 1 35 0 2 623 30383 0 0 0 chr3L 5104537 5107766 -19435791 + BEL_I LTR Pao 1535 4763 -641 2 623 2182 0 0 0 chr3L 5107866 5108098 -19435459 - BEL_I LTR Pao -5172 232 1 2 623 3377 0 0 0 chr3L 5108098 5108459 -19435098 - BEL_LTR LTR Pao 0 361 1 2 623 3329 6 0 0 chr3L 5108467 5108828 -19434729 - BEL_LTR LTR Pao 0 361 1 2 77 33139 1 0 0 chr3L 5108828 5112349 -19431208 - BEL_I LTR Pao 0 5404 1884 2 624 3377 0 0 0 chr3L 5112359 5112720 -19430837 - BEL_LTR LTR Pao 0 361 1 2 624 22923 0 0 0 chr3L 5112720 5115156 -19428401 - BEL_I LTR Pao 0 5404 2969 2 624 22493 0 0 0 chr3L 5115163 5117698 -19425859 + I_DM LINE I 2923 5457 -774 2 624 180 0 0 0 chr3L 5117698 5117718 -19425839 + (TAA)n Simple_repeat Simple_repeat 3 22 0 2 624 27 62 0 0 chr3L 5119082 5119130 -19424427 + AT_rich Low_complexity Low_complexity 1 48 0 2 624 26 0 0 0 chr3L 5120214 5120240 -19423317 + AT_rich Low_complexity Low_complexity 1 26 0 2 624 188 122 24 0 chr3L 5120546 5120587 -19422970 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 624 44 0 0 0 chr3L 5121458 5121502 -19422055 + AT_rich Low_complexity Low_complexity 1 44 0 2 624 257 0 30 0 chr3L 5121976 5122009 -19421548 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2 624 24 0 0 0 chr3L 5125558 5125582 -19417975 + AT_rich Low_complexity Low_complexity 1 24 0 2 624 21 0 0 0 chr3L 5129331 5129352 -19414205 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 21 36 0 0 chr3L 5145190 5145218 -19398339 + AT_rich Low_complexity Low_complexity 1 28 0 2 624 202 173 0 71 chr3L 5149272 5149328 -19394229 + T-rich Low_complexity Low_complexity 2 53 0 2 624 22 0 0 0 chr3L 5150121 5150143 -19393414 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 201 179 35 18 chr3L 5150615 5150672 -19392885 + T-rich Low_complexity Low_complexity 1 58 0 2 624 305 82 20 0 chr3L 5152054 5152103 -19391454 + (TA)n Simple_repeat Simple_repeat 1 50 0 2 624 180 97 0 0 chr3L 5152417 5152448 -19391109 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 624 240 111 0 0 chr3L 5152695 5152731 -19390826 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2 624 227 242 21 32 chr3L 5155735 5155829 -19387728 + A-rich Low_complexity Low_complexity 3 95 0 2 624 25 0 0 0 chr3L 5157360 5157385 -19386172 + AT_rich Low_complexity Low_complexity 1 25 0 2 624 21 36 0 0 chr3L 5159791 5159819 -19383738 + AT_rich Low_complexity Low_complexity 1 28 0 2 624 352 62 49 24 chr3L 5160174 5160256 -19383301 + (TTTTTG)n Simple_repeat Simple_repeat 6 89 0 2 624 34 55 0 0 chr3L 5160276 5160331 -19383226 + AT_rich Low_complexity Low_complexity 1 55 0 2 624 30 0 0 0 chr3L 5160547 5160577 -19382980 + AT_rich Low_complexity Low_complexity 1 30 0 2 624 210 37 0 0 chr3L 5161237 5161264 -19382293 + (T)n Simple_repeat Simple_repeat 1 27 0 2 624 200 208 0 0 chr3L 5165705 5165753 -19377804 + T-rich Low_complexity Low_complexity 1 48 0 2 624 264 130 0 0 chr3L 5166143 5166189 -19377368 + (AAATG)n Simple_repeat Simple_repeat 5 50 0 2 624 36 23 0 0 chr3L 5166485 5166528 -19377029 + AT_rich Low_complexity Low_complexity 1 43 0 2 624 29 60 0 0 chr3L 5168094 5168144 -19375413 + AT_rich Low_complexity Low_complexity 1 50 0 2 624 21 0 0 0 chr3L 5168425 5168446 -19375111 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 185 154 0 25 chr3L 5170283 5170323 -19373234 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 624 236 178 0 0 chr3L 5177327 5177372 -19366185 + CT-rich Low_complexity Low_complexity 2 46 0 2 624 204 40 0 0 chr3L 5178219 5178244 -19365313 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 624 191 152 22 0 chr3L 5183610 5183656 -19359901 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 624 180 185 0 0 chr3L 5186337 5186391 -19357166 + (CTG)n Simple_repeat Simple_repeat 2 55 0 2 624 183 80 0 0 chr3L 5186692 5186717 -19356840 + (GA)n Simple_repeat Simple_repeat 1 25 0 2 624 216 67 0 0 chr3L 5187759 5187789 -19355768 + (A)n Simple_repeat Simple_repeat 1 30 0 2 624 25 0 0 0 chr3L 5189364 5189389 -19354168 + AT_rich Low_complexity Low_complexity 1 25 0 2 624 25 31 0 0 chr3L 5190353 5190385 -19353172 + AT_rich Low_complexity Low_complexity 1 32 0 2 624 21 0 0 0 chr3L 5190509 5190530 -19353027 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 31 0 0 0 chr3L 5193077 5193108 -19350449 + AT_rich Low_complexity Low_complexity 1 31 0 2 624 252 130 0 0 chr3L 5194379 5194425 -19349132 + (CA)n Simple_repeat Simple_repeat 1 46 0 2 624 236 30 0 29 chr3L 5194606 5194640 -19348917 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 624 22 35 0 0 chr3L 5196291 5196320 -19347237 + AT_rich Low_complexity Low_complexity 1 29 0 2 624 22 0 0 0 chr3L 5198440 5198462 -19345095 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 218 204 20 0 chr3L 5198559 5198608 -19344949 + (CA)n Simple_repeat Simple_repeat 2 51 0 2 624 248 278 14 0 chr3L 5201165 5201237 -19342320 + (CA)n Simple_repeat Simple_repeat 2 74 0 2 624 180 0 0 0 chr3L 5203702 5203722 -19339835 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 624 201 121 0 0 chr3L 5203822 5203855 -19339702 + (T)n Simple_repeat Simple_repeat 1 33 0 2 624 239 237 0 0 chr3L 5204166 5204225 -19339332 + (TGAA)n Simple_repeat Simple_repeat 1 59 0 2 624 24 0 0 0 chr3L 5206437 5206461 -19337096 + AT_rich Low_complexity Low_complexity 1 24 0 2 624 183 156 0 0 chr3L 5206787 5206819 -19336738 + T-rich Low_complexity Low_complexity 1 32 0 2 624 28 29 0 0 chr3L 5207450 5207485 -19336072 + AT_rich Low_complexity Low_complexity 1 35 0 2 624 22 0 0 0 chr3L 5209255 5209277 -19334280 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 214 236 0 0 chr3L 5210299 5210354 -19333203 + (CGA)n Simple_repeat Simple_repeat 2 56 0 2 624 204 277 12 65 chr3L 5212088 5212258 -19331299 + (CGG)n Simple_repeat Simple_repeat 2 162 0 2 624 243 0 0 0 chr3L 5213406 5213433 -19330124 + (A)n Simple_repeat Simple_repeat 1 27 0 2 624 22 0 0 0 chr3L 5214142 5214164 -19329393 + AT_rich Low_complexity Low_complexity 1 22 0 2 624 189 159 0 0 chr3L 5216104 5216148 -19327409 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 624 192 77 0 0 chr3L 5219351 5219377 -19324180 + (CAG)n Simple_repeat Simple_repeat 1 26 0 2 624 219 152 0 0 chr3L 5220607 5220653 -19322904 + (TG)n Simple_repeat Simple_repeat 1 46 0 2 624 210 71 0 0 chr3L 5225466 5225494 -19318063 + (CGAAA)n Simple_repeat Simple_repeat 3 30 0 2 624 23 0 0 0 chr3L 5226256 5226279 -19317278 + AT_rich Low_complexity Low_complexity 1 23 0 2 624 24 0 0 0 chr3L 5226357 5226381 -19317176 + AT_rich Low_complexity Low_complexity 1 24 0 2 624 21 0 0 0 chr3L 5230761 5230782 -19312775 + AT_rich Low_complexity Low_complexity 1 21 0 2 624 228 67 0 0 chr3L 5232593 5232623 -19310934 + (TATG)n Simple_repeat Simple_repeat 4 33 0 2 624 211 217 22 0 chr3L 5234624 5234670 -19308887 + (TG)n Simple_repeat Simple_repeat 1 47 0 2 624 240 35 0 0 chr3L 5236068 5236097 -19307460 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 2 624 26 50 0 0 chr3L 5236536 5236576 -19306981 + AT_rich Low_complexity Low_complexity 1 40 0 2 624 213 220 0 0 chr3L 5240802 5240852 -19302705 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 625 33 0 0 0 chr3L 5244158 5244191 -19299366 + AT_rich Low_complexity Low_complexity 1 33 0 2 625 25 51 0 0 chr3L 5244216 5244255 -19299302 + AT_rich Low_complexity Low_complexity 1 39 0 2 625 26 82 0 0 chr3L 5244305 5244366 -19299191 + AT_rich Low_complexity Low_complexity 1 61 0 2 625 48 0 0 0 chr3L 5244997 5245045 -19298512 + AT_rich Low_complexity Low_complexity 1 48 0 2 625 201 121 0 0 chr3L 5245703 5245736 -19297821 + (T)n Simple_repeat Simple_repeat 1 33 0 2 625 203 184 0 0 chr3L 5246136 5246174 -19297383 + (CA)n Simple_repeat Simple_repeat 1 38 0 2 625 198 0 0 0 chr3L 5250326 5250348 -19293209 + (A)n Simple_repeat Simple_repeat 1 22 0 2 625 213 65 0 0 chr3L 5251352 5251383 -19292174 + (CAAAAA)n Simple_repeat Simple_repeat 1 31 0 2 625 260 229 35 46 chr3L 5251608 5251695 -19291862 + A-rich Low_complexity Low_complexity 4 89 0 2 625 180 77 0 0 chr3L 5252300 5252326 -19291231 + (T)n Simple_repeat Simple_repeat 1 26 0 2 625 245 262 0 15 chr3L 5252392 5252458 -19291099 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 625 180 0 0 0 chr3L 5253489 5253509 -19290048 + (CTG)n Simple_repeat Simple_repeat 3 22 0 2 625 186 71 0 0 chr3L 5253542 5253570 -19289987 + (CA)n Simple_repeat Simple_repeat 1 28 0 2 625 216 250 0 0 chr3L 5256150 5256206 -19287351 + GA-rich Low_complexity Low_complexity 1 56 0 2 625 192 77 0 0 chr3L 5257809 5257835 -19285722 + (TA)n Simple_repeat Simple_repeat 2 27 0 2 625 224 100 25 0 chr3L 5259529 5259569 -19283988 + (CA)n Simple_repeat Simple_repeat 2 42 0 2 625 309 51 0 0 chr3L 5260159 5260198 -19283359 + (TA)n Simple_repeat Simple_repeat 1 39 0 2 625 261 0 0 0 chr3L 5260943 5260972 -19282585 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 625 28 29 0 0 chr3L 5262897 5262932 -19280625 + AT_rich Low_complexity Low_complexity 1 35 0 2 625 272 133 0 16 chr3L 5263395 5263456 -19280101 + (CAGT)n Simple_repeat Simple_repeat 3 62 0 2 625 336 209 0 0 chr3L 5264652 5264757 -19278800 - ROO_I LTR Pao -7513 743 639 2 625 258 167 0 0 chr3L 5264846 5264906 -19278651 + (TGG)n Simple_repeat Simple_repeat 3 62 0 2 625 423 119 0 0 chr3L 5264988 5265055 -19278502 + (CTG)n Simple_repeat Simple_repeat 2 68 0 2 625 22 35 0 0 chr3L 5266843 5266872 -19276685 + AT_rich Low_complexity Low_complexity 1 29 0 2 625 198 0 0 0 chr3L 5267540 5267562 -19275995 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 625 183 146 0 0 chr3L 5268939 5268980 -19274577 + (ACTG)n Simple_repeat Simple_repeat 1 41 0 2 625 38 61 0 0 chr3L 5269648 5269714 -19273843 + AT_rich Low_complexity Low_complexity 1 66 0 2 625 194 143 20 0 chr3L 5270799 5270848 -19272709 + (CA)n Simple_repeat Simple_repeat 1 50 0 2 625 23 78 0 0 chr3L 5271454 5271505 -19272052 + AT_rich Low_complexity Low_complexity 1 51 0 2 625 27 0 0 0 chr3L 5271763 5271790 -19271767 + AT_rich Low_complexity Low_complexity 1 27 0 2 625 25 31 0 0 chr3L 5271834 5271866 -19271691 + AT_rich Low_complexity Low_complexity 1 32 0 2 625 32 0 0 0 chr3L 5272170 5272202 -19271355 + AT_rich Low_complexity Low_complexity 1 32 0 2 625 243 0 0 0 chr3L 5274508 5274535 -19269022 + (TG)n Simple_repeat Simple_repeat 1 27 0 2 625 252 0 0 0 chr3L 5275040 5275068 -19268489 + (TTTCC)n Simple_repeat Simple_repeat 4 31 0 2 625 23 54 0 0 chr3L 5275294 5275331 -19268226 + AT_rich Low_complexity Low_complexity 1 37 0 2 625 204 40 0 0 chr3L 5277064 5277089 -19266468 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 625 229 208 0 0 chr3L 5278247 5278295 -19265262 + (AACTG)n Simple_repeat Simple_repeat 4 51 0 2 625 210 171 0 0 chr3L 5279099 5279140 -19264417 + (CAG)n Simple_repeat Simple_repeat 1 41 0 2 625 192 200 0 0 chr3L 5280027 5280067 -19263490 + (TA)n Simple_repeat Simple_repeat 2 41 0 2 625 22 0 0 0 chr3L 5280567 5280589 -19262968 + AT_rich Low_complexity Low_complexity 1 22 0 2 625 25 31 0 0 chr3L 5281969 5282001 -19261556 + AT_rich Low_complexity Low_complexity 1 32 0 2 625 291 150 0 0 chr3L 5282558 5282618 -19260939 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 625 383 125 0 14 chr3L 5284798 5284871 -19258686 + (CTG)n Simple_repeat Simple_repeat 2 73 0 2 625 25 75 0 0 chr3L 5285195 5285248 -19258309 + AT_rich Low_complexity Low_complexity 1 53 0 2 625 28 61 0 0 chr3L 5285482 5285531 -19258026 + AT_rich Low_complexity Low_complexity 1 49 0 2 625 24 0 0 0 chr3L 5290125 5290149 -19253408 + AT_rich Low_complexity Low_complexity 1 24 0 2 625 5694 0 0 0 chr3L 5292307 5292965 -19250592 - QUASIMODO_LTR LTR Gypsy 0 658 1 2 625 50515 4 0 0 chr3L 5292965 5299027 -19244530 - QUASIMODO_I LTR Gypsy 0 6060 1 2 625 5694 0 0 0 chr3L 5299027 5299685 -19243872 - QUASIMODO_LTR LTR Gypsy 0 658 1 2 625 29 0 0 0 chr3L 5299717 5299746 -19243811 + AT_rich Low_complexity Low_complexity 1 29 0 2 625 27 0 0 0 chr3L 5300411 5300438 -19243119 + AT_rich Low_complexity Low_complexity 1 27 0 2 625 22 0 0 0 chr3L 5301849 5301871 -19241686 + AT_rich Low_complexity Low_complexity 1 22 0 2 625 21 0 0 0 chr3L 5302281 5302302 -19241255 + AT_rich Low_complexity Low_complexity 1 21 0 2 625 21 0 0 0 chr3L 5302523 5302544 -19241013 + AT_rich Low_complexity Low_complexity 1 21 0 2 625 23 33 0 0 chr3L 5303999 5304029 -19239528 + AT_rich Low_complexity Low_complexity 1 30 0 2 625 27 0 0 0 chr3L 5304113 5304140 -19239417 + AT_rich Low_complexity Low_complexity 1 27 0 2 625 21 36 0 0 chr3L 5304875 5304903 -19238654 + AT_rich Low_complexity Low_complexity 1 28 0 2 625 22 39 0 55 chr3L 5305123 5305178 -19238379 + AT_rich Low_complexity Low_complexity 1 52 0 2 625 276 130 0 0 chr3L 5306147 5306193 -19237364 + (CAT)n Simple_repeat Simple_repeat 2 47 0 2 625 279 278 9 36 chr3L 5306671 5306783 -19236774 + (CAA)n Simple_repeat Simple_repeat 1 109 0 2 625 24 0 0 0 chr3L 5307020 5307044 -19236513 + AT_rich Low_complexity Low_complexity 1 24 0 2 625 24 32 0 0 chr3L 5307083 5307114 -19236443 + AT_rich Low_complexity Low_complexity 1 31 0 2 625 25 0 0 0 chr3L 5307378 5307403 -19236154 + AT_rich Low_complexity Low_complexity 1 25 0 2 625 22 0 0 0 chr3L 5310468 5310490 -19233067 + AT_rich Low_complexity Low_complexity 1 22 0 2 625 205 51 51 0 chr3L 5311532 5311571 -19231986 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 625 28 0 0 0 chr3L 5312689 5312717 -19230840 + AT_rich Low_complexity Low_complexity 1 28 0 2 625 200 216 20 0 chr3L 5313006 5313057 -19230500 + (TG)n Simple_repeat Simple_repeat 1 52 0 2 625 212 229 0 0 chr3L 5313796 5313844 -19229713 + G-rich Low_complexity Low_complexity 1 48 0 2 625 222 191 0 0 chr3L 5318978 5319025 -19224532 + (TCTG)n Simple_repeat Simple_repeat 1 47 0 2 625 192 97 0 0 chr3L 5321110 5321141 -19222416 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 625 225 200 0 0 chr3L 5321486 5321531 -19222026 + T-rich Low_complexity Low_complexity 1 45 0 2 625 189 74 0 0 chr3L 5323346 5323373 -19220184 + (GATTG)n Simple_repeat Simple_repeat 5 31 0 2 625 234 62 0 0 chr3L 5324511 5324543 -19219014 + (CAT)n Simple_repeat Simple_repeat 1 32 0 2 625 267 31 0 0 chr3L 5325415 5325447 -19218110 + (CAG)n Simple_repeat Simple_repeat 3 34 0 2 625 22 35 0 0 chr3L 5326335 5326364 -19217193 + AT_rich Low_complexity Low_complexity 1 29 0 2 625 27 0 0 0 chr3L 5330106 5330133 -19213424 + AT_rich Low_complexity Low_complexity 1 27 0 2 625 233 264 0 0 chr3L 5330317 5330389 -19213168 + (CA)n Simple_repeat Simple_repeat 1 72 0 2 625 24 32 0 0 chr3L 5330859 5330890 -19212667 + AT_rich Low_complexity Low_complexity 1 31 0 2 625 31 44 0 0 chr3L 5330993 5331038 -19212519 + AT_rich Low_complexity Low_complexity 1 45 0 2 625 23 54 0 0 chr3L 5336415 5336452 -19207105 + AT_rich Low_complexity Low_complexity 1 37 0 2 625 21 0 0 0 chr3L 5338704 5338725 -19204832 + AT_rich Low_complexity Low_complexity 1 21 0 2 625 198 0 0 0 chr3L 5348007 5348029 -19195528 + (CA)n Simple_repeat Simple_repeat 2 23 0 2 625 21 0 0 0 chr3L 5349315 5349336 -19194221 + AT_rich Low_complexity Low_complexity 1 21 0 2 625 25 0 0 0 chr3L 5349527 5349552 -19194005 + AT_rich Low_complexity Low_complexity 1 25 0 2 625 30 45 0 0 chr3L 5349705 5349749 -19193808 + AT_rich Low_complexity Low_complexity 1 44 0 2 625 58 38 0 0 chr3L 5352588 5352667 -19190890 + AT_rich Low_complexity Low_complexity 1 79 0 2 625 67 73 0 0 chr3L 5353095 5353232 -19190325 + AT_rich Low_complexity Low_complexity 1 137 0 2 625 183 42 0 0 chr3L 5356090 5356114 -19187443 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 625 33 56 0 0 chr3L 5356287 5356341 -19187216 + AT_rich Low_complexity Low_complexity 1 54 0 2 625 29 28 0 0 chr3L 5361055 5361091 -19182466 + AT_rich Low_complexity Low_complexity 1 36 0 2 625 32 81 0 0 chr3L 5361245 5361319 -19182238 + AT_rich Low_complexity Low_complexity 1 74 0 2 625 318 140 0 0 chr3L 5362479 5362536 -19181021 - DNAREP1_DM LINE Penelope 0 594 538 2 625 227 41 82 0 chr3L 5363364 5363413 -19180144 + (TA)n Simple_repeat Simple_repeat 1 53 0 2 625 24 0 0 0 chr3L 5364686 5364710 -19178847 + AT_rich Low_complexity Low_complexity 1 24 0 2 625 255 170 0 0 chr3L 5365136 5365183 -19178374 + (CATA)n Simple_repeat Simple_repeat 1 47 0 2 625 221 304 0 35 chr3L 5367052 5367110 -19176447 + G-rich Low_complexity Low_complexity 1 56 0 2 625 21 0 0 0 chr3L 5369062 5369083 -19174474 + AT_rich Low_complexity Low_complexity 1 21 0 2 625 207 69 0 0 chr3L 5371356 5371385 -19172172 + (A)n Simple_repeat Simple_repeat 1 29 0 2 625 21 36 0 0 chr3L 5372206 5372234 -19171323 + AT_rich Low_complexity Low_complexity 1 28 0 2 626 22 35 0 0 chr3L 5386578 5386607 -19156950 + AT_rich Low_complexity Low_complexity 1 29 0 2 626 234 0 0 0 chr3L 5387015 5387041 -19156516 + (T)n Simple_repeat Simple_repeat 1 26 0 2 626 240 59 0 0 chr3L 5388439 5388473 -19155084 + (GTATG)n Simple_repeat Simple_repeat 5 38 0 2 626 216 0 0 0 chr3L 5390067 5390091 -19153466 + (GA)n Simple_repeat Simple_repeat 2 25 0 2 626 210 245 0 0 chr3L 5392307 5392360 -19151197 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 2 626 210 91 0 0 chr3L 5393151 5393184 -19150373 + (TG)n Simple_repeat Simple_repeat 1 33 0 2 626 186 43 0 0 chr3L 5393852 5393875 -19149682 + (CAG)n Simple_repeat Simple_repeat 3 25 0 2 626 288 240 0 13 chr3L 5396143 5396219 -19147338 + (CA)n Simple_repeat Simple_repeat 2 76 0 2 626 33 25 0 0 chr3L 5398251 5398291 -19145266 + AT_rich Low_complexity Low_complexity 1 40 0 2 626 32 43 0 0 chr3L 5399255 5399301 -19144256 + AT_rich Low_complexity Low_complexity 1 46 0 2 626 40 37 0 0 chr3L 5405029 5405083 -19138474 + AT_rich Low_complexity Low_complexity 1 54 0 2 626 243 281 0 0 chr3L 5406332 5406414 -19137143 + (CA)n Simple_repeat Simple_repeat 1 82 0 2 626 200 241 19 0 chr3L 5407864 5407918 -19135639 + (TTG)n Simple_repeat Simple_repeat 1 55 0 2 626 30 0 0 0 chr3L 5408137 5408167 -19135390 + AT_rich Low_complexity Low_complexity 1 30 0 2 626 23 0 0 0 chr3L 5410006 5410029 -19133528 + AT_rich Low_complexity Low_complexity 1 23 0 2 626 51 0 0 0 chr3L 5419101 5419152 -19124405 + AT_rich Low_complexity Low_complexity 1 51 0 2 626 198 71 0 0 chr3L 5419722 5419750 -19123807 + (CTG)n Simple_repeat Simple_repeat 1 28 0 2 626 29 0 0 0 chr3L 5420307 5420336 -19123221 + AT_rich Low_complexity Low_complexity 1 29 0 2 626 22 35 0 0 chr3L 5421062 5421091 -19122466 + AT_rich Low_complexity Low_complexity 1 29 0 2 626 26 50 0 0 chr3L 5421881 5421921 -19121636 + AT_rich Low_complexity Low_complexity 1 40 0 2 626 378 61 0 0 chr3L 5427161 5427210 -19116347 + (TCTA)n Simple_repeat Simple_repeat 3 51 0 2 626 198 0 0 0 chr3L 5427852 5427874 -19115683 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 626 201 132 0 0 chr3L 5429781 5429819 -19113738 + (CA)n Simple_repeat Simple_repeat 2 39 0 2 626 21 0 0 0 chr3L 5430184 5430205 -19113352 + AT_rich Low_complexity Low_complexity 1 21 0 2 626 36 23 0 0 chr3L 5431310 5431353 -19112204 + AT_rich Low_complexity Low_complexity 1 43 0 2 626 24 32 0 0 chr3L 5433083 5433114 -19110443 + AT_rich Low_complexity Low_complexity 1 31 0 2 626 237 108 0 0 chr3L 5434050 5434087 -19109470 + (TATG)n Simple_repeat Simple_repeat 3 39 0 2 626 241 89 44 0 chr3L 5436680 5436725 -19106832 + (TA)n Simple_repeat Simple_repeat 1 47 0 2 626 22 0 0 0 chr3L 5439517 5439539 -19104018 + AT_rich Low_complexity Low_complexity 1 22 0 2 626 198 208 0 0 chr3L 5441111 5441164 -19102393 + (CAA)n Simple_repeat Simple_repeat 2 54 0 2 626 213 132 0 0 chr3L 5441211 5441249 -19102308 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 626 384 22 0 0 chr3L 5443679 5443724 -19099833 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 626 26 0 0 0 chr3L 5445610 5445636 -19097921 + AT_rich Low_complexity Low_complexity 1 26 0 2 626 2866 16 0 0 chr3L 5451215 5451536 -19092021 + MAX_LTR LTR Pao 1 321 0 2 626 73342 1 2 1 chr3L 5451536 5459438 -19084119 + MAX_I LTR Pao 1 7914 0 2 626 2866 16 0 0 chr3L 5459438 5459759 -19083798 + MAX_LTR LTR Pao 1 321 0 2 626 26 88 0 0 chr3L 5462037 5462105 -19081452 + AT_rich Low_complexity Low_complexity 1 68 0 2 626 228 224 0 0 chr3L 5463502 5463560 -19079997 + (ACTG)n Simple_repeat Simple_repeat 4 61 0 2 626 24 0 0 0 chr3L 5468084 5468108 -19075449 + AT_rich Low_complexity Low_complexity 1 24 0 2 626 183 42 0 0 chr3L 5468452 5468476 -19075081 + (A)n Simple_repeat Simple_repeat 1 24 0 2 626 222 312 0 0 chr3L 5470508 5470604 -19072953 + A-rich Low_complexity Low_complexity 1 96 0 2 626 229 296 0 0 chr3L 5474720 5474818 -19068739 + (CAA)n Simple_repeat Simple_repeat 3 100 0 2 626 224 265 0 30 chr3L 5475591 5475692 -19067865 + (CAA)n Simple_repeat Simple_repeat 1 98 0 2 626 324 315 0 0 chr3L 5476165 5476327 -19067230 + (CAA)n Simple_repeat Simple_repeat 2 163 0 2 626 394 320 0 0 chr3L 5476350 5476528 -19067029 + (CAA)n Simple_repeat Simple_repeat 1 178 0 2 626 27 29 0 0 chr3L 5476746 5476780 -19066777 + AT_rich Low_complexity Low_complexity 1 34 0 2 626 22 35 0 0 chr3L 5480334 5480363 -19063194 + AT_rich Low_complexity Low_complexity 1 29 0 2 626 21 0 0 0 chr3L 5481519 5481540 -19062017 + AT_rich Low_complexity Low_complexity 1 21 0 2 626 521 250 23 17 chr3L 5482222 5482397 -19061160 - XDMR Unknown Unknown -185 176 1 2 626 535 289 31 34 chr3L 5482268 5482562 -19060995 + SAR_DM Satellite Satellite 588 880 -592 2 626 358 247 61 61 chr3L 5482397 5482595 -19060962 - XDMR Unknown Unknown 0 361 164 2 626 22 0 0 0 chr3L 5483970 5483992 -19059565 + AT_rich Low_complexity Low_complexity 1 22 0 2 626 189 0 0 0 chr3L 5492258 5492279 -19051278 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2 626 221 150 0 0 chr3L 5494666 5494706 -19048851 + (CTG)n Simple_repeat Simple_repeat 1 40 0 2 626 21 0 0 0 chr3L 5495102 5495123 -19048434 + AT_rich Low_complexity Low_complexity 1 21 0 2 626 22 35 0 0 chr3L 5495574 5495603 -19047954 + AT_rich Low_complexity Low_complexity 1 29 0 2 626 28 71 0 0 chr3L 5496051 5496107 -19047450 + AT_rich Low_complexity Low_complexity 1 56 0 2 626 26 50 0 0 chr3L 5496127 5496167 -19047390 + AT_rich Low_complexity Low_complexity 1 40 0 2 626 27 0 0 0 chr3L 5499783 5499810 -19043747 + AT_rich Low_complexity Low_complexity 1 27 0 2 626 194 62 31 0 chr3L 5500091 5500123 -19043434 + (TTACG)n Simple_repeat Simple_repeat 4 36 0 2 626 231 175 17 17 chr3L 5500135 5500193 -19043364 + A-rich Low_complexity Low_complexity 4 61 0 2 626 207 194 0 0 chr3L 5502415 5502451 -19041106 + (CATATA)n Simple_repeat Simple_repeat 4 39 0 2 626 198 0 0 0 chr3L 5504186 5504208 -19039349 + (TA)n Simple_repeat Simple_repeat 2 23 0 2 626 192 77 0 0 chr3L 5504443 5504469 -19039088 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 627 216 206 15 31 chr3L 5505700 5505765 -19037792 + (TTTAA)n Simple_repeat Simple_repeat 3 66 0 2 627 21 0 0 0 chr3L 5513421 5513442 -19030115 + AT_rich Low_complexity Low_complexity 1 21 0 2 627 203 171 0 0 chr3L 5522560 5522601 -19020956 + T-rich Low_complexity Low_complexity 1 41 0 2 627 189 0 0 0 chr3L 5526081 5526102 -19017455 + (TA)n Simple_repeat Simple_repeat 2 22 0 2 627 184 137 19 19 chr3L 5529308 5529360 -19014197 + A-rich Low_complexity Low_complexity 5 56 0 2 627 21 57 0 0 chr3L 5530474 5530509 -19013048 + AT_rich Low_complexity Low_complexity 1 35 0 2 627 2007 0 0 51 chr3L 5530882 5531158 -19012399 - LINEJ1_DM LINE Jockey 0 5020 4759 2 627 23 33 0 0 chr3L 5531506 5531536 -19012021 + AT_rich Low_complexity Low_complexity 1 30 0 2 627 269 276 45 0 chr3L 5533724 5533858 -19009699 + (CCGGG)n Simple_repeat Simple_repeat 3 142 0 2 627 257 231 13 13 chr3L 5534899 5534978 -19008579 + (TG)n Simple_repeat Simple_repeat 2 80 0 2 627 261 397 0 0 chr3L 5535831 5535987 -19007570 + (CCG)n Simple_repeat Simple_repeat 2 157 0 2 627 205 131 64 21 chr3L 5537069 5537116 -19006441 + (GTTTG)n Simple_repeat Simple_repeat 5 53 0 2 627 200 59 29 0 chr3L 5537658 5537692 -19005865 + (TA)n Simple_repeat Simple_repeat 1 35 0 2 627 207 69 0 0 chr3L 5543357 5543386 -19000171 + (TTA)n Simple_repeat Simple_repeat 1 29 0 2 627 198 128 0 0 chr3L 5544392 5544431 -18999126 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 627 50 65 0 0 chr3L 5545563 5545655 -18997902 + AT_rich Low_complexity Low_complexity 1 92 0 2 627 25 31 0 0 chr3L 5546318 5546350 -18997207 + AT_rich Low_complexity Low_complexity 1 32 0 2 627 21 0 0 0 chr3L 5546405 5546426 -18997131 + AT_rich Low_complexity Low_complexity 1 21 0 2 627 243 61 0 0 chr3L 5546813 5546846 -18996711 + (AGATG)n Simple_repeat Simple_repeat 1 33 0 2 627 23 0 0 0 chr3L 5548346 5548369 -18995188 + AT_rich Low_complexity Low_complexity 1 23 0 2 627 27 62 0 0 chr3L 5551089 5551137 -18992420 + AT_rich Low_complexity Low_complexity 1 48 0 2 627 35 71 0 0 chr3L 5554764 5554834 -18988723 + AT_rich Low_complexity Low_complexity 1 70 0 2 627 22 35 0 0 chr3L 5556116 5556145 -18987412 + AT_rich Low_complexity Low_complexity 1 29 0 2 627 31 0 0 0 chr3L 5558197 5558228 -18985329 + AT_rich Low_complexity Low_complexity 1 31 0 2 627 277 204 0 61 chr3L 5561048 5561147 -18982410 + (CTG)n Simple_repeat Simple_repeat 1 93 0 2 627 291 300 0 0 chr3L 5561377 5561507 -18982050 + (CTG)n Simple_repeat Simple_repeat 1 130 0 2 627 27 29 0 0 chr3L 5562163 5562197 -18981360 + AT_rich Low_complexity Low_complexity 1 34 0 2 627 25 0 0 0 chr3L 5562739 5562764 -18980793 + AT_rich Low_complexity Low_complexity 1 25 0 2 627 21 0 0 0 chr3L 5563089 5563110 -18980447 + AT_rich Low_complexity Low_complexity 1 21 0 2 627 501 84 0 0 chr3L 5565279 5565350 -18978207 + (CAG)n Simple_repeat Simple_repeat 1 71 0 2 627 255 61 0 0 chr3L 5567917 5567950 -18975607 + (CTACT)n Simple_repeat Simple_repeat 3 35 0 2 627 216 0 0 0 chr3L 5568247 5568271 -18975286 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 627 21 0 0 0 chr3L 5571635 5571656 -18971901 + AT_rich Low_complexity Low_complexity 1 21 0 2 627 235 225 0 48 chr3L 5573015 5573099 -18970458 + A-rich Low_complexity Low_complexity 2 81 0 2 627 22 109 0 0 chr3L 5574312 5574404 -18969153 + AT_rich Low_complexity Low_complexity 1 92 0 2 627 25 51 0 0 chr3L 5574525 5574564 -18968993 + AT_rich Low_complexity Low_complexity 1 39 0 2 627 24 32 0 0 chr3L 5575980 5576011 -18967546 + AT_rich Low_complexity Low_complexity 1 31 0 2 627 26 30 0 0 chr3L 5581925 5581958 -18961599 + AT_rich Low_complexity Low_complexity 1 33 0 2 627 24 32 0 0 chr3L 5583120 5583151 -18960406 + AT_rich Low_complexity Low_complexity 1 31 0 2 627 23 0 0 0 chr3L 5583668 5583691 -18959866 + AT_rich Low_complexity Low_complexity 1 23 0 2 627 25 0 0 0 chr3L 5587872 5587897 -18955660 + AT_rich Low_complexity Low_complexity 1 25 0 2 627 23 33 0 0 chr3L 5591713 5591743 -18951814 + AT_rich Low_complexity Low_complexity 1 30 0 2 627 22 35 0 0 chr3L 5597615 5597644 -18945913 + AT_rich Low_complexity Low_complexity 1 29 0 2 627 268 229 0 0 chr3L 5602436 5602497 -18941060 + (ACTG)n Simple_repeat Simple_repeat 1 61 0 2 627 22 35 0 0 chr3L 5602800 5602829 -18940728 + AT_rich Low_complexity Low_complexity 1 29 0 2 627 29 84 0 0 chr3L 5603558 5603629 -18939928 + AT_rich Low_complexity Low_complexity 1 71 0 2 627 25 31 0 0 chr3L 5606469 5606501 -18937056 + AT_rich Low_complexity Low_complexity 1 32 0 2 627 22 56 0 0 chr3L 5606659 5606695 -18936862 + AT_rich Low_complexity Low_complexity 1 36 0 2 627 192 135 0 0 chr3L 5606915 5606952 -18936605 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 627 201 121 0 0 chr3L 5607952 5607985 -18935572 + (CAA)n Simple_repeat Simple_repeat 1 33 0 2 627 21 36 0 0 chr3L 5609408 5609436 -18934121 + AT_rich Low_complexity Low_complexity 1 28 0 2 627 209 220 17 0 chr3L 5609768 5609827 -18933730 + (CTG)n Simple_repeat Simple_repeat 1 60 0 2 627 202 200 0 0 chr3L 5611829 5611869 -18931688 + (TG)n Simple_repeat Simple_repeat 1 40 0 2 627 215 146 24 0 chr3L 5612093 5612134 -18931423 + CT-rich Low_complexity Low_complexity 4 45 0 2 627 189 74 0 0 chr3L 5612697 5612724 -18930833 + (T)n Simple_repeat Simple_repeat 1 27 0 2 627 207 195 0 49 chr3L 5618486 5618567 -18924990 + (TTG)n Simple_repeat Simple_repeat 3 79 0 2 627 213 200 44 0 chr3L 5619269 5619314 -18924243 + (CAGA)n Simple_repeat Simple_repeat 2 48 0 2 627 235 267 0 0 chr3L 5619963 5620023 -18923534 + ROO_I LTR Pao 653 712 -7544 2 627 180 125 0 0 chr3L 5620862 5620894 -18922663 + (TATG)n Simple_repeat Simple_repeat 4 35 0 2 627 217 182 23 0 chr3L 5623010 5623054 -18920503 + A-rich Low_complexity Low_complexity 2 46 0 2 627 24 32 0 0 chr3L 5623574 5623605 -18919952 + AT_rich Low_complexity Low_complexity 1 31 0 2 627 204 236 0 18 chr3L 5623748 5623804 -18919753 + GA-rich Low_complexity Low_complexity 1 55 0 2 627 206 32 32 0 chr3L 5625485 5625516 -18918041 + (TA)n Simple_repeat Simple_repeat 2 33 0 2 627 201 39 0 0 chr3L 5626486 5626512 -18917045 + (CAG)n Simple_repeat Simple_repeat 2 27 0 2 627 192 152 0 0 chr3L 5627450 5627483 -18916074 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 627 23 33 0 0 chr3L 5629222 5629252 -18914305 + AT_rich Low_complexity Low_complexity 1 30 0 2 627 453 116 0 0 chr3L 5629830 5629899 -18913658 + (CAGTT)n Simple_repeat Simple_repeat 1 69 0 2 627 198 103 0 0 chr3L 5630239 5630268 -18913289 + (CAGAGA)n Simple_repeat Simple_repeat 1 29 0 2 627 200 209 23 0 chr3L 5630428 5630471 -18913086 + (TCG)n Simple_repeat Simple_repeat 2 45 0 2 627 203 158 0 0 chr3L 5630963 5631001 -18912556 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2 627 192 40 0 0 chr3L 5633248 5633273 -18910284 + (GA)n Simple_repeat Simple_repeat 2 26 0 2 627 189 0 0 0 chr3L 5633457 5633478 -18910079 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 627 252 225 14 27 chr3L 5634158 5634231 -18909326 + (CATA)n Simple_repeat Simple_repeat 1 72 0 2 627 204 67 0 0 chr3L 5634538 5634568 -18908989 + (T)n Simple_repeat Simple_repeat 1 30 0 2 628 21 0 0 0 chr3L 5636704 5636725 -18906832 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 215 316 0 0 chr3L 5637404 5637499 -18906058 + C-rich Low_complexity Low_complexity 5 99 0 2 628 24 85 0 0 chr3L 5638553 5638612 -18904945 + AT_rich Low_complexity Low_complexity 1 59 0 2 628 243 133 0 0 chr3L 5639043 5639088 -18904469 + (GGA)n Simple_repeat Simple_repeat 1 45 0 2 628 243 133 0 0 chr3L 5641551 5641596 -18901961 + (CAG)n Simple_repeat Simple_repeat 1 45 0 2 628 207 100 0 0 chr3L 5641754 5641784 -18901773 + (CAG)n Simple_repeat Simple_repeat 3 32 0 2 628 186 43 0 0 chr3L 5642004 5642027 -18901530 + (CAGA)n Simple_repeat Simple_repeat 3 25 0 2 628 25 31 0 0 chr3L 5642273 5642305 -18901252 + AT_rich Low_complexity Low_complexity 1 32 0 2 628 180 0 0 0 chr3L 5642486 5642506 -18901051 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 2 628 290 198 47 0 chr3L 5642681 5642767 -18900790 + (TA)n Simple_repeat Simple_repeat 1 90 0 2 628 195 186 0 0 chr3L 5642883 5642926 -18900631 + (TTA)n Simple_repeat Simple_repeat 1 43 0 2 628 21 0 0 0 chr3L 5643085 5643106 -18900451 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 25 0 0 0 chr3L 5643296 5643321 -18900236 + AT_rich Low_complexity Low_complexity 1 25 0 2 628 22 0 0 0 chr3L 5643887 5643909 -18899648 + AT_rich Low_complexity Low_complexity 1 22 0 2 628 294 169 0 0 chr3L 5644464 5644529 -18899028 + (CA)n Simple_repeat Simple_repeat 2 66 0 2 628 252 0 0 0 chr3L 5649024 5649052 -18894505 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 2 628 21 0 0 0 chr3L 5649640 5649661 -18893896 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 212 245 0 0 chr3L 5650819 5650868 -18892689 + CT-rich Low_complexity Low_complexity 2 50 0 2 628 214 173 27 0 chr3L 5651536 5651611 -18891946 + (CA)n Simple_repeat Simple_repeat 1 77 0 2 628 186 118 0 0 chr3L 5651747 5651781 -18891776 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 628 22 35 0 0 chr3L 5655507 5655536 -18888021 + AT_rich Low_complexity Low_complexity 1 29 0 2 628 252 0 0 0 chr3L 5657646 5657674 -18885883 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 628 183 129 0 0 chr3L 5658543 5658574 -18884983 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 628 23 54 0 0 chr3L 5660263 5660300 -18883257 + AT_rich Low_complexity Low_complexity 1 37 0 2 628 24 0 0 0 chr3L 5662305 5662329 -18881228 + AT_rich Low_complexity Low_complexity 1 24 0 2 628 295 256 0 0 chr3L 5662497 5662587 -18880970 + (CCA)n Simple_repeat Simple_repeat 2 91 0 2 628 210 301 0 0 chr3L 5662656 5662729 -18880828 + (ATG)n Simple_repeat Simple_repeat 1 73 0 2 628 231 114 0 0 chr3L 5662729 5662764 -18880793 + (TAA)n Simple_repeat Simple_repeat 3 37 0 2 628 239 176 20 0 chr3L 5664440 5664491 -18879066 + (CA)n Simple_repeat Simple_repeat 2 53 0 2 628 252 0 0 0 chr3L 5666432 5666460 -18877097 + (GA)n Simple_repeat Simple_repeat 2 29 0 2 628 240 113 0 53 chr3L 5669008 5669083 -18874474 + (CAA)n Simple_repeat Simple_repeat 2 72 0 2 628 289 75 19 19 chr3L 5670776 5670830 -18872727 + (TA)n Simple_repeat Simple_repeat 2 55 0 2 628 189 0 0 0 chr3L 5670986 5671007 -18872550 + (CA)n Simple_repeat Simple_repeat 1 21 0 2 628 234 91 0 0 chr3L 5671158 5671191 -18872366 + (ATG)n Simple_repeat Simple_repeat 3 35 0 2 628 216 0 0 0 chr3L 5671192 5671216 -18872341 + (TA)n Simple_repeat Simple_repeat 1 24 0 2 628 271 236 27 14 chr3L 5671766 5671839 -18871718 + (CGTG)n Simple_repeat Simple_repeat 4 77 0 2 628 237 83 0 0 chr3L 5672035 5672071 -18871486 + (TG)n Simple_repeat Simple_repeat 1 36 0 2 628 256 246 14 0 chr3L 5672766 5672835 -18870722 + (TG)n Simple_repeat Simple_repeat 2 71 0 2 628 21 71 0 0 chr3L 5673780 5673822 -18869735 + AT_rich Low_complexity Low_complexity 1 42 0 2 628 234 0 0 0 chr3L 5675673 5675699 -18867858 + (CTG)n Simple_repeat Simple_repeat 3 28 0 2 628 197 65 0 31 chr3L 5676920 5676952 -18866605 + (TTTCG)n Simple_repeat Simple_repeat 3 33 0 2 628 254 224 0 0 chr3L 5679582 5679631 -18863926 + C-rich Low_complexity Low_complexity 2 50 0 2 628 192 40 0 0 chr3L 5681249 5681274 -18862283 + (A)n Simple_repeat Simple_repeat 1 25 0 2 628 202 254 17 0 chr3L 5682545 5682604 -18860953 + (TA)n Simple_repeat Simple_repeat 1 60 0 2 628 222 224 0 0 chr3L 5682738 5682787 -18860770 + (TG)n Simple_repeat Simple_repeat 1 49 0 2 628 204 135 0 0 chr3L 5682876 5682913 -18860644 + (TG)n Simple_repeat Simple_repeat 2 38 0 2 628 192 152 0 0 chr3L 5683761 5683794 -18859763 + (TTG)n Simple_repeat Simple_repeat 2 34 0 2 628 217 159 23 0 chr3L 5683885 5683929 -18859628 + CT-rich Low_complexity Low_complexity 1 45 0 2 628 203 167 0 0 chr3L 5684429 5684465 -18859092 + GA-rich Low_complexity Low_complexity 2 37 0 2 628 245 135 0 19 chr3L 5684733 5684786 -18858771 + (TATCG)n Simple_repeat Simple_repeat 3 54 0 2 628 186 103 0 0 chr3L 5685483 5685512 -18858045 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 628 21 0 0 0 chr3L 5685919 5685940 -18857617 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 200 171 0 47 chr3L 5687581 5687624 -18855933 + (TATG)n Simple_repeat Simple_repeat 1 41 0 2 628 183 129 0 0 chr3L 5689019 5689050 -18854507 + (TGG)n Simple_repeat Simple_repeat 2 32 0 2 628 348 103 0 0 chr3L 5696393 5696451 -18847106 + (CAGT)n Simple_repeat Simple_repeat 4 61 0 2 628 207 149 64 0 chr3L 5696704 5696751 -18846806 + (CAG)n Simple_repeat Simple_repeat 1 50 0 2 628 24 0 0 0 chr3L 5697699 5697723 -18845834 + AT_rich Low_complexity Low_complexity 1 24 0 2 628 208 100 0 91 chr3L 5698366 5698421 -18845136 + (GGTTG)n Simple_repeat Simple_repeat 3 52 0 2 628 219 125 0 0 chr3L 5702903 5702943 -18840614 + (CA)n Simple_repeat Simple_repeat 1 40 0 2 628 22 0 0 0 chr3L 5703530 5703552 -18840005 + AT_rich Low_complexity Low_complexity 1 22 0 2 628 234 105 0 0 chr3L 5704579 5704617 -18838940 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 628 21 0 0 0 chr3L 5706254 5706275 -18837282 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 258 32 0 0 chr3L 5708436 5708467 -18835090 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 628 354 61 0 0 chr3L 5710199 5710248 -18833309 + (ACTG)n Simple_repeat Simple_repeat 4 52 0 2 628 240 216 0 0 chr3L 5711244 5711295 -18832262 + (TG)n Simple_repeat Simple_repeat 2 52 0 2 628 228 35 0 0 chr3L 5712114 5712143 -18831414 + (A)n Simple_repeat Simple_repeat 1 29 0 2 628 189 132 0 0 chr3L 5713330 5713368 -18830189 + (CAG)n Simple_repeat Simple_repeat 2 39 0 2 628 252 290 0 0 chr3L 5713876 5713945 -18829612 + (TG)n Simple_repeat Simple_repeat 2 70 0 2 628 180 125 0 0 chr3L 5716190 5716222 -18827335 + (GGA)n Simple_repeat Simple_repeat 3 34 0 2 628 245 242 0 0 chr3L 5719198 5719260 -18824297 + (CAG)n Simple_repeat Simple_repeat 3 64 0 2 628 318 50 0 0 chr3L 5719709 5719749 -18823808 + (TC)n Simple_repeat Simple_repeat 2 41 0 2 628 209 189 0 0 chr3L 5722113 5722150 -18821407 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 628 261 0 0 0 chr3L 5722466 5722495 -18821062 + (CA)n Simple_repeat Simple_repeat 1 29 0 2 628 255 221 0 14 chr3L 5722548 5722617 -18820940 + ROO_I LTR Pao 701 768 -7488 2 628 21 36 0 0 chr3L 5722650 5722678 -18820879 + AT_rich Low_complexity Low_complexity 1 28 0 2 628 189 74 0 0 chr3L 5724407 5724434 -18819123 + (TA)n Simple_repeat Simple_repeat 1 27 0 2 628 264 148 67 11 chr3L 5727421 5727510 -18816047 + (CAA)n Simple_repeat Simple_repeat 1 94 0 2 628 230 225 0 0 chr3L 5728192 5728232 -18815325 + (TCTCTG)n Simple_repeat Simple_repeat 3 42 0 2 628 195 184 0 0 chr3L 5729987 5730025 -18813532 + (CAG)n Simple_repeat Simple_repeat 1 38 0 2 628 29 28 0 0 chr3L 5732143 5732179 -18811378 + AT_rich Low_complexity Low_complexity 1 36 0 2 628 270 81 0 0 chr3L 5732572 5732609 -18810948 + (CAG)n Simple_repeat Simple_repeat 1 37 0 2 628 225 94 0 0 chr3L 5734980 5735012 -18808545 + (CAG)n Simple_repeat Simple_repeat 1 32 0 2 628 198 0 0 0 chr3L 5736078 5736100 -18807457 + (CAG)n Simple_repeat Simple_repeat 2 23 0 2 628 183 80 0 0 chr3L 5736933 5736958 -18806599 + (TA)n Simple_repeat Simple_repeat 2 26 0 2 628 208 204 0 36 chr3L 5737237 5737293 -18806264 + (CATATA)n Simple_repeat Simple_repeat 2 55 0 2 628 229 0 54 27 chr3L 5737570 5737607 -18805950 + (CTAA)n Simple_repeat Simple_repeat 3 40 0 2 628 270 106 0 0 chr3L 5738408 5738455 -18805102 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 628 23 0 0 0 chr3L 5739007 5739030 -18804527 + AT_rich Low_complexity Low_complexity 1 23 0 2 628 284 0 28 0 chr3L 5742315 5742351 -18801206 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 628 189 0 0 0 chr3L 5743460 5743481 -18800076 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 628 195 42 0 0 chr3L 5743647 5743671 -18799886 + (TG)n Simple_repeat Simple_repeat 1 24 0 2 628 184 73 98 0 chr3L 5745873 5745914 -18797643 + (TATAA)n Simple_repeat Simple_repeat 5 49 0 2 628 215 214 0 0 chr3L 5748733 5748775 -18794782 + (ATGGTG)n Simple_repeat Simple_repeat 2 43 0 2 628 249 119 0 0 chr3L 5748914 5748956 -18794601 + (TA)n Simple_repeat Simple_repeat 1 42 0 2 628 25 51 0 0 chr3L 5749206 5749245 -18794312 + AT_rich Low_complexity Low_complexity 1 39 0 2 628 21 0 0 0 chr3L 5761981 5762002 -18781555 + AT_rich Low_complexity Low_complexity 1 21 0 2 628 195 42 0 0 chr3L 5763854 5763878 -18779679 + (TTTTC)n Simple_repeat Simple_repeat 3 26 0 2 629 25 0 0 0 chr3L 5777766 5777791 -18765766 + AT_rich Low_complexity Low_complexity 1 25 0 2 629 21 36 0 0 chr3L 5778142 5778170 -18765387 + AT_rich Low_complexity Low_complexity 1 28 0 2 629 198 71 0 0 chr3L 5778321 5778349 -18765208 + (TATG)n Simple_repeat Simple_repeat 4 31 0 2 629 219 139 0 0 chr3L 5778652 5778688 -18764869 + (CATA)n Simple_repeat Simple_repeat 1 36 0 2 629 25 0 0 0 chr3L 5781779 5781804 -18761753 + AT_rich Low_complexity Low_complexity 1 25 0 2 629 25 51 0 0 chr3L 5790633 5790672 -18752885 + AT_rich Low_complexity Low_complexity 1 39 0 2 629 209 146 0 77 chr3L 5792275 5792327 -18751230 + T-rich Low_complexity Low_complexity 6 53 0 2 629 206 246 14 14 chr3L 5792562 5792632 -18750925 + (CTTTA)n Simple_repeat Simple_repeat 1 70 0 2 629 207 182 0 0 chr3L 5793271 5793315 -18750242 + CT-rich Low_complexity Low_complexity 3 46 0 2 629 216 0 0 0 chr3L 5793406 5793430 -18750127 + (T)n Simple_repeat Simple_repeat 1 24 0 2 629 247 282 9 18 chr3L 5796210 5796322 -18747235 + (CAG)n Simple_repeat Simple_repeat 3 113 0 2 629 242 277 12 0 chr3L 5803761 5803844 -18739713 + (CA)n Simple_repeat Simple_repeat 2 85 0 2 629 243 191 14 29 chr3L 5806831 5806901 -18736656 + T-rich Low_complexity Low_complexity 2 70 0 2 629 24 0 0 0 chr3L 5806946 5806970 -18736587 + AT_rich Low_complexity Low_complexity 1 24 0 2 629 236 91 23 0 chr3L 5807165 5807209 -18736348 + (TG)n Simple_repeat Simple_repeat 1 45 0 2 629 21 0 0 0 chr3L 5807519 5807540 -18736017 + AT_rich Low_complexity Low_complexity 1 21 0 2 629 30 0 0 0 chr3L 5807976 5808006 -18735551 + AT_rich Low_complexity Low_complexity 1 30 0 2 629 218 200 0 0 chr3L 5808317 5808367 -18735190 + A-rich Low_complexity Low_complexity 1 50 0 2 629 197 100 50 0 chr3L 5808896 5808936 -18734621 + (TTTTG)n Simple_repeat Simple_repeat 2 43 0 2 629 24 53 0 0 chr3L 5809092 5809130 -18734427 + AT_rich Low_complexity Low_complexity 1 38 0 2 629 215 259 0 45 chr3L 5809482 5809571 -18733986 + T-rich Low_complexity Low_complexity 2 86 0 2 629 200 143 24 0 chr3L 5809586 5809628 -18733929 + (ATTTG)n Simple_repeat Simple_repeat 2 44 0 2 629 268 284 0 0 chr3L 5812829 5812903 -18730654 + (TG)n Simple_repeat Simple_repeat 1 74 0 2 629 200 194 0 0 chr3L 5814282 5814318 -18729239 + (TATATG)n Simple_repeat Simple_repeat 4 39 0 2 629 279 286 0 0 chr3L 5817128 5817198 -18726359 + (TTG)n Simple_repeat Simple_repeat 2 71 0 2 629 242 74 0 69 chr3L 5817345 5817403 -18726154 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 2 629 25 31 0 0 chr3L 5817827 5817859 -18725698 + AT_rich Low_complexity Low_complexity 1 32 0 2 629 205 184 0 0 chr3L 5818967 5819005 -18724552 + (TCTG)n Simple_repeat Simple_repeat 2 39 0 2 629 183 139 0 0 chr3L 5820096 5820132 -18723425 + (CAAAAA)n Simple_repeat Simple_repeat 1 36 0 2 629 242 224 0 0 chr3L 5822755 5822813 -18720744 + T-rich Low_complexity Low_complexity 1 58 0 2 629 189 154 0 0 chr3L 5824115 5824154 -18719403 + (CAG)n Simple_repeat Simple_repeat 3 41 0 2 629 201 39 0 0 chr3L 5825055 5825081 -18718476 + (CAAAAA)n Simple_repeat Simple_repeat 4 29 0 2 629 207 161 0 0 chr3L 5827335 5827366 -18716191 + (CTG)n Simple_repeat Simple_repeat 3 33 0 2 629 309 89 0 0 chr3L 5827827 5827872 -18715685 + (CAG)n Simple_repeat Simple_repeat 3 47 0 2 629 234 116 0 0 chr3L 5828639 5828682 -18714875 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 629 216 0 0 0 chr3L 5830698 5830722 -18712835 + (CTATA)n Simple_repeat Simple_repeat 2 25 0 2 629 197 108 27 0 chr3L 5831352 5831389 -18712168 + (CTG)n Simple_repeat Simple_repeat 1 38 0 2 629 201 132 0 0 chr3L 5831927 5831965 -18711592 + (A)n Simple_repeat Simple_repeat 1 38 0 2 629 201 39 0 0 chr3L 5832291 5832317 -18711240 + (CACAA)n Simple_repeat Simple_repeat 4 29 0 2 629 252 149 0 0 chr3L 5833634 5833681 -18709876 + (GA)n Simple_repeat Simple_repeat 2 48 0 2 629 219 88 0 0 chr3L 5834455 5834489 -18709068 + (CAA)n Simple_repeat Simple_repeat 3 36 0 2 629 189 0 0 0 chr3L 5834879 5834900 -18708657 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 629 234 141 89 13 chr3L 5835742 5835821 -18707736 - ROO_I LTR Pao -7528 728 644 2 629 201 217 16 32 chr3L 5835854 5835916 -18707641 + (CTG)n Simple_repeat Simple_repeat 3 63 0 2 629 267 31 0 0 chr3L 5836184 5836216 -18707341 + (CTG)n Simple_repeat Simple_repeat 2 33 0 2 629 195 162 0 0 chr3L 5836363 5836400 -18707157 + (CTG)n Simple_repeat Simple_repeat 2 38 0 2 629 261 83 0 0 chr3L 5836497 5836533 -18707024 + (CTG)n Simple_repeat Simple_repeat 3 38 0 2 629 479 60 23 23 chr3L 5836720 5836806 -18706751 + (CTG)n Simple_repeat Simple_repeat 1 86 0 2 629 249 163 0 0 chr3L 5837063 5837112 -18706445 + (CTG)n Simple_repeat Simple_repeat 2 50 0 2 629 205 167 0 0 chr3L 5837419 5837455 -18706102 + (CTG)n Simple_repeat Simple_repeat 2 37 0 2 629 303 161 0 0 chr3L 5837616 5837672 -18705885 + (ATG)n Simple_repeat Simple_repeat 1 56 0 2 629 183 42 0 0 chr3L 5841764 5841788 -18701769 + (GGAAA)n Simple_repeat Simple_repeat 3 26 0 2 629 216 0 0 0 chr3L 5841832 5841856 -18701701 + (GCTG)n Simple_repeat Simple_repeat 1 24 0 2 629 234 300 0 12 chr3L 5842051 5842132 -18701425 + (TCTG)n Simple_repeat Simple_repeat 4 83 0 2 629 22 35 0 0 chr3L 5842503 5842532 -18701025 + AT_rich Low_complexity Low_complexity 1 29 0 2 629 189 107 0 0 chr3L 5843056 5843084 -18700473 + (CGAGT)n Simple_repeat Simple_repeat 2 29 0 2 629 36 82 0 0 chr3L 5843222 5843307 -18700250 + AT_rich Low_complexity Low_complexity 1 85 0 2 629 257 135 0 19 chr3L 5844462 5844515 -18699042 + (CCA)n Simple_repeat Simple_repeat 2 53 0 2 629 205 258 0 0 chr3L 5845660 5845726 -18697831 + T-rich Low_complexity Low_complexity 1 66 0 2 629 242 228 0 0 chr3L 5846073 5846130 -18697427 + T-rich Low_complexity Low_complexity 1 57 0 2 629 210 71 0 0 chr3L 5846329 5846357 -18697200 + (CGGT)n Simple_repeat Simple_repeat 4 31 0 2 629 258 32 0 0 chr3L 5849197 5849228 -18694329 + (CA)n Simple_repeat Simple_repeat 2 32 0 2 629 213 159 0 0 chr3L 5852082 5852126 -18691431 + (TA)n Simple_repeat Simple_repeat 2 45 0 2 629 245 232 0 35 chr3L 5853542 5853627 -18689930 + ROO_I LTR Pao 664 745 -7511 2 629 207 0 0 0 chr3L 5853699 5853722 -18689835 + (CTTTA)n Simple_repeat Simple_repeat 4 26 0 2 629 225 132 0 0 chr3L 5853734 5853772 -18689785 + (CAG)n Simple_repeat Simple_repeat 1 38 0 2 629 228 122 0 0 chr3L 5853855 5853896 -18689661 + (AAGTG)n Simple_repeat Simple_repeat 5 45 0 2 629 306 0 0 0 chr3L 5858995 5859029 -18684528 + (CGA)n Simple_repeat Simple_repeat 1 34 0 2 629 288 53 0 0 chr3L 5859744 5859782 -18683775 + (CAG)n Simple_repeat Simple_repeat 1 38 0 2 629 183 184 0 0 chr3L 5860423 5860461 -18683096 + (CAA)n Simple_repeat Simple_repeat 1 38 0 2 629 291 54 0 0 chr3L 5862206 5862243 -18681314 + (CAT)n Simple_repeat Simple_repeat 1 37 0 2 629 180 0 0 0 chr3L 5862471 5862491 -18681066 + (TATATG)n Simple_repeat Simple_repeat 4 23 0 2 629 24 32 0 0 chr3L 5862700 5862731 -18680826 + AT_rich Low_complexity Low_complexity 1 31 0 2 629 24 32 0 0 chr3L 5863037 5863068 -18680489 + AT_rich Low_complexity Low_complexity 1 31 0 2 629 221 159 15 31 chr3L 5866456 5866521 -18677036 + T-rich Low_complexity Low_complexity 6 69 0 2 629 209 222 0 0 chr3L 5868980 5869025 -18674532 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2 629 32 57 0 0 chr3L 5871243 5871296 -18672261 + AT_rich Low_complexity Low_complexity 1 53 0 2 629 24 0 0 0 chr3L 5871370 5871394 -18672163 + AT_rich Low_complexity Low_complexity 1 24 0 2 629 244 216 0 0 chr3L 5873822 5873873 -18669684 + (CA)n Simple_repeat Simple_repeat 1 51 0 2 629 216 0 0 0 chr3L 5874356 5874380 -18669177 + (TG)n Simple_repeat Simple_repeat 2 25 0 2 629 207 300 12 0 chr3L 5875121 5875201 -18668356 + GA-rich Low_complexity Low_complexity 1 81 0 2 629 221 222 0 0 chr3L 5880481 5880526 -18663031 + (CTGGGG)n Simple_repeat Simple_repeat 2 46 0 2 629 22 35 0 0 chr3L 5892490 5892519 -18651038 + AT_rich Low_complexity Low_complexity 1 29 0 2 630 1711 0 0 0 chr3L 5903185 5903371 -18640186 + POGON1 DNA Pogo 1 186 0 2 630 23 0 0 0 chr3L 5906964 5906987 -18636570 + AT_rich Low_complexity Low_complexity 1 23 0 2 630 22 35 0 0 chr3L 5910164 5910193 -18633364 + AT_rich Low_complexity Low_complexity 1 29 0 2 630 21 0 0 0 chr3L 5910640 5910661 -18632896 + AT_rich Low_complexity Low_complexity 1 21 0 2 630 32 0 0 0 chr3L 5913866 5913898 -18629659 + AT_rich Low_complexity Low_complexity 1 32 0 2 630 861 35 0 0 chr3L 5919487 5919601 -18623956 - BS LINE Jockey 0 5126 5013 2 630 28 0 0 0 chr3L 5927111 5927139 -18616418 + AT_rich Low_complexity Low_complexity 1 28 0 2 630 27 49 0 0 chr3L 5934427 5934468 -18609089 + AT_rich Low_complexity Low_complexity 1 41 0 2 630 246 160 0 0 chr3L 5936810 5936860 -18606697 + T-rich Low_complexity Low_complexity 1 50 0 2 630 312 27 0 0 chr3L 5941120 5941157 -18602400 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 630 200 167 0 0 chr3L 5941851 5941881 -18601676 + (CTG)n Simple_repeat Simple_repeat 2 31 0 2 630 215 203 16 0 chr3L 5943807 5943871 -18599686 + (CAG)n Simple_repeat Simple_repeat 1 65 0 2 630 186 171 0 0 chr3L 5945477 5945518 -18598039 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 630 234 0 0 0 chr3L 5945949 5945975 -18597582 + (TG)n Simple_repeat Simple_repeat 2 27 0 2 630 22 35 0 0 chr3L 5947111 5947140 -18596417 + AT_rich Low_complexity Low_complexity 1 29 0 2 630 231 146 0 0 chr3L 5947293 5947334 -18596223 + (CTG)n Simple_repeat Simple_repeat 1 41 0 2 630 204 97 0 0 chr3L 5947480 5947511 -18596046 + (CTG)n Simple_repeat Simple_repeat 2 32 0 2 630 247 176 28 64 chr3L 5948177 5948286 -18595271 + ROO_I LTR Pao 639 743 -7513 2 630 189 0 0 0 chr3L 5948541 5948562 -18594995 + (ACTG)n Simple_repeat Simple_repeat 1 21 0 2 630 248 235 0 14 chr3L 5949927 5949996 -18593561 + (TG)n Simple_repeat Simple_repeat 1 68 0 2 630 234 81 0 0 chr3L 5952703 5952740 -18590817 + (CAATC)n Simple_repeat Simple_repeat 5 41 0 2 630 36 0 0 0 chr3L 5954139 5954175 -18589382 + AT_rich Low_complexity Low_complexity 1 36 0 2 630 189 159 0 0 chr3L 5961585 5961629 -18581928 + (CTG)n Simple_repeat Simple_repeat 3 46 0 2 630 21 0 0 0 chr3L 5966528 5966549 -18577008 + AT_rich Low_complexity Low_complexity 1 21 0 2 630 27 49 0 0 chr3L 5966588 5966629 -18576928 + AT_rich Low_complexity Low_complexity 1 41 0 2 630 228 260 0 0 chr3L 5969958 5970008 -18573549 + (TGAG)n Simple_repeat Simple_repeat 4 53 0 2 630 201 74 0 0 chr3L 5974034 5974061 -18569496 + (TATCG)n Simple_repeat Simple_repeat 1 27 0 2 630 25 0 0 0 chr3L 5980176 5980201 -18563356 + AT_rich Low_complexity Low_complexity 1 25 0 2 630 208 196 22 0 chr3L 5982939 5982985 -18560572 + (ATG)n Simple_repeat Simple_repeat 1 47 0 2 630 221 200 0 30 chr3L 5985605 5985672 -18557885 + (CAAAC)n Simple_repeat Simple_repeat 3 67 0 2 630 31 68 0 0 chr3L 5987332 5987391 -18556166 + AT_rich Low_complexity Low_complexity 1 59 0 2 630 183 188 0 0 chr3L 5992920 5992968 -18550589 + (CA)n Simple_repeat Simple_repeat 1 48 0 2 630 219 69 0 0 chr3L 5994833 5994862 -18548695 + (T)n Simple_repeat Simple_repeat 1 29 0 2 630 3497 0 0 3 chr3L 5994881 5995269 -18548288 - LINEJ1_DM LINE Jockey -10 5010 4624 2 630 20373 9 1 0 chr3L 5995269 5997476 -18546081 - LINEJ1_DM LINE Jockey -2806 2214 7 2 630 180 77 0 0 chr3L 5999218 5999244 -18544313 + (TTTTTA)n Simple_repeat Simple_repeat 5 30 0 2 630 201 121 0 0 chr3L 6004639 6004672 -18538885 + (TA)n Simple_repeat Simple_repeat 2 34 0 2 630 23 0 0 0 chr3L 6009760 6009783 -18533774 + AT_rich Low_complexity Low_complexity 1 23 0 2 630 24 0 0 0 chr3L 6010661 6010685 -18532872 + AT_rich Low_complexity Low_complexity 1 24 0 2 630 180 111 0 0 chr3L 6011763 6011790 -18531767 + (CAT)n Simple_repeat Simple_repeat 1 27 0 2 630 230 253 0 46 chr3L 6011967 6012054 -18531503 + T-rich Low_complexity Low_complexity 6 88 0 2 630 278 315 9 9 chr3L 6012495 6012604 -18530953 + (CAG)n Simple_repeat Simple_repeat 1 109 0 2 630 225 385 0 0 chr3L 6012622 6012718 -18530839 + (CCCGAA)n Simple_repeat Simple_repeat 5 100 0 2 630 31 0 0 0 chr3L 6013066 6013097 -18530460 + AT_rich Low_complexity Low_complexity 1 31 0 2 630 279 93 0 0 chr3L 6013976 6014019 -18529538 + (TA)n Simple_repeat Simple_repeat 2 44 0 2 630 180 0 0 0 chr3L 6018898 6018918 -18524639 + (TTTAG)n Simple_repeat Simple_repeat 4 23 0 2 630 24 32 0 0 chr3L 6019156 6019187 -18524370 + AT_rich Low_complexity Low_complexity 1 31 0 2 630 24 0 0 0 chr3L 6019362 6019386 -18524171 + AT_rich Low_complexity Low_complexity 1 24 0 2 630 186 71 0 0 chr3L 6021741 6021769 -18521788 + (CTG)n Simple_repeat Simple_repeat 1 28 0 2 630 186 167 0 0 chr3L 6023284 6023320 -18520237 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 630 213 39 0 0 chr3L 6023681 6023707 -18519850 + (TTCGG)n Simple_repeat Simple_repeat 2 27 0 2 631 21 0 0 0 chr3L 6030081 6030102 -18513455 + GC_rich Low_complexity Low_complexity 1 21 0 2 631 21198 3 0 0 chr3L 6033515 6035820 -18507737 - DOC LINE Jockey -4 4721 2418 2 631 234 0 0 0 chr3L 6037931 6037957 -18505600 + (CA)n Simple_repeat Simple_repeat 2 27 0 2 631 21 0 0 0 chr3L 6042313 6042334 -18501223 + AT_rich Low_complexity Low_complexity 1 21 0 2 631 260 53 26 0 chr3L 6044980 6045018 -18498539 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 631 242 130 43 0 chr3L 6046439 6046485 -18497072 + Gypsy12_I LTR Gypsy 293 340 -5206 2 631 306 242 59 29 chr3L 6046572 6046674 -18496883 - Gypsy12A_LTR LTR Gypsy -2141 139 35 2 631 206 250 0 35 chr3L 6050667 6050725 -18492832 + (ATTCG)n Simple_repeat Simple_repeat 5 60 0 2 631 213 121 0 0 chr3L 6051630 6051663 -18491894 + (GAAAA)n Simple_repeat Simple_repeat 2 34 0 2 631 23 54 0 0 chr3L 6052712 6052749 -18490808 + AT_rich Low_complexity Low_complexity 1 37 0 2 631 26 30 0 0 chr3L 6058208 6058241 -18485316 + AT_rich Low_complexity Low_complexity 1 33 0 2 631 26 0 0 0 chr3L 6060378 6060404 -18483153 + AT_rich Low_complexity Low_complexity 1 26 0 2 631 30 45 0 0 chr3L 6061699 6061743 -18481814 + AT_rich Low_complexity Low_complexity 1 44 0 2 631 28 48 0 0 chr3L 6063000 6063042 -18480515 + AT_rich Low_complexity Low_complexity 1 42 0 2 631 24 0 0 0 chr3L 6064616 6064640 -18478917 + AT_rich Low_complexity Low_complexity 1 24 0 2 631 21 95 0 0 chr3L 6064835 6064898 -18478659 + AT_rich Low_complexity Low_complexity 1 63 0 2 631 204 163 23 0 chr3L 6064900 6064943 -18478614 + (TAA)n Simple_repeat Simple_repeat 2 45 0 2 631 23 0 0 0 chr3L 6071429 6071452 -18472105 + AT_rich Low_complexity Low_complexity 1 23 0 2 631 207 100 0 0 chr3L 6073362 6073392 -18470165 + (CAT)n Simple_repeat Simple_repeat 1 30 0 2 631 438 139 0 0 chr3L 6073399 6073471 -18470086 + (CAG)n Simple_repeat Simple_repeat 2 73 0 2 631 30 0 0 0 chr3L 6074590 6074620 -18468937 + AT_rich Low_complexity Low_complexity 1 30 0 2 631 225 94 0 0 chr3L 6077072 6077104 -18466453 + (TCTG)n Simple_repeat Simple_repeat 4 35 0 2 631 213 94 0 0 chr3L 6078167 6078199 -18465358 + (TTG)n Simple_repeat Simple_repeat 3 34 0 2 631 44 84 0 0 chr3L 6078350 6078457 -18465100 + AT_rich Low_complexity Low_complexity 1 107 0 2 631 36 0 0 0 chr3L 6078476 6078512 -18465045 + AT_rich Low_complexity Low_complexity 1 36 0 2 631 194 100 75 0 chr3L 6079702 6079742 -18463815 + (CATCC)n Simple_repeat Simple_repeat 3 45 0 2 631 21 0 0 0 chr3L 6079933 6079954 -18463603 + AT_rich Low_complexity Low_complexity 1 21 0 2 631 205 238 0 60 chr3L 6080139 6080206 -18463351 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 2 631 231 193 35 0 chr3L 6083387 6083444 -18460113 + (TA)n Simple_repeat Simple_repeat 1 59 0 2 631 200 279 0 0 chr3L 6084041 6084109 -18459448 + A-rich Low_complexity Low_complexity 1 68 0 2 631 25 0 0 0 chr3L 6094464 6094489 -18449068 + AT_rich Low_complexity Low_complexity 1 25 0 2 631 36 53 0 0 chr3L 6094526 6094583 -18448974 + AT_rich Low_complexity Low_complexity 1 57 0 2 631 201 263 26 0 chr3L 6096798 6096874 -18446683 + (CAG)n Simple_repeat Simple_repeat 1 78 0 2 631 200 176 0 38 chr3L 6097299 6097352 -18446205 + T-rich Low_complexity Low_complexity 3 53 0 2 631 273 29 0 0 chr3L 6099524 6099558 -18443999 + (TA)n Simple_repeat Simple_repeat 2 35 0 2 631 241 235 0 0 chr3L 6101679 6101730 -18441827 + (TCTCTG)n Simple_repeat Simple_repeat 3 53 0 2 631 234 239 0 0 chr3L 6103348 6103415 -18440142 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 631 202 219 0 0 chr3L 6104324 6104365 -18439192 + (CAG)n Simple_repeat Simple_repeat 3 43 0 2 631 24 32 0 0 chr3L 6105539 6105570 -18437987 + AT_rich Low_complexity Low_complexity 1 31 0 2 631 21 36 0 0 chr3L 6108524 6108552 -18435005 + AT_rich Low_complexity Low_complexity 1 28 0 2 631 209 191 0 0 chr3L 6109414 6109456 -18434101 + (TG)n Simple_repeat Simple_repeat 1 42 0 2 631 29 0 0 0 chr3L 6109832 6109861 -18433696 + AT_rich Low_complexity Low_complexity 1 29 0 2 631 195 42 0 0 chr3L 6110306 6110330 -18433227 + (TC)n Simple_repeat Simple_repeat 1 24 0 2 631 51 31 0 0 chr3L 6112264 6112329 -18431228 + AT_rich Low_complexity Low_complexity 1 65 0 2 631 21 0 0 0 chr3L 6114415 6114436 -18429121 + AT_rich Low_complexity Low_complexity 1 21 0 2 631 210 163 0 23 chr3L 6115596 6115640 -18427917 + G-rich Low_complexity Low_complexity 3 45 0 2 631 22 56 0 0 chr3L 6118118 6118154 -18425403 + AT_rich Low_complexity Low_complexity 1 36 0 2 631 31 26 0 0 chr3L 6120344 6120382 -18423175 + AT_rich Low_complexity Low_complexity 1 38 0 2 631 25 75 0 0 chr3L 6120518 6120571 -18422986 + AT_rich Low_complexity Low_complexity 1 53 0 2 631 24 32 0 0 chr3L 6123078 6123109 -18420448 + AT_rich Low_complexity Low_complexity 1 31 0 2 631 28 95 0 0 chr3L 6123200 6123284 -18420273 + AT_rich Low_complexity Low_complexity 1 84 0 2 631 2170 111 22 14 chr3L 6127086 6127499 -18416058 - DNAREP1_DM LINE Penelope -262 332 1 2 631 428 175 72 3 chr3L 6128717 6128828 -18414729 + G2_DM LINE Jockey 1877 1952 -1150 2 631 751 301 85 29 chr3L 6128818 6129229 -18414328 + G2_DM LINE Jockey 2090 2523 -579 2 631 26 0 0 0 chr3L 6130162 6130188 -18413369 + AT_rich Low_complexity Low_complexity 1 26 0 2 631 23 54 0 0 chr3L 6137194 6137231 -18406326 + AT_rich Low_complexity Low_complexity 1 37 0 2 631 1390 128 5 0 chr3L 6139101 6139312 -18404245 - DNAREP1_DM LINE Penelope -382 212 1 2 631 21 0 0 0 chr3L 6141259 6141280 -18402277 + AT_rich Low_complexity Low_complexity 1 21 0 2 631 1964 143 34 13 chr3L 6141744 6142183 -18401374 - DNAREP1_DM LINE Penelope -262 332 1 2 631 21 0 0 0 chr3L 6144130 6144151 -18399406 + AT_rich Low_complexity Low_complexity 1 21 0 2 631 233 146 0 20 chr3L 6145209 6145258 -18398299 + (ACTG)n Simple_repeat Simple_repeat 1 48 0 2 631 195 129 0 0 chr3L 6148205 6148236 -18395321 + (TCCG)n Simple_repeat Simple_repeat 3 33 0 2 631 33 25 0 0 chr3L 6152011 6152051 -18391506 + AT_rich Low_complexity Low_complexity 1 40 0 2 631 35 0 0 0 chr3L 6154313 6154348 -18389209 + AT_rich Low_complexity Low_complexity 1 35 0 2 631 32 81 0 0 chr3L 6155258 6155332 -18388225 + AT_rich Low_complexity Low_complexity 1 74 0 2 631 26 74 0 0 chr3L 6156810 6156864 -18386693 + AT_rich Low_complexity Low_complexity 1 54 0 2 631 32 26 0 0 chr3L 6157839 6157878 -18385679 + AT_rich Low_complexity Low_complexity 1 39 0 2 631 23 0 0 0 chr3L 6157944 6157967 -18385590 + AT_rich Low_complexity Low_complexity 1 23 0 2 631 228 143 0 0 chr3L 6158257 6158299 -18385258 + (TG)n Simple_repeat Simple_repeat 2 43 0 2 631 186 171 0 0 chr3L 6160115 6160156 -18383401 + (CAAT)n Simple_repeat Simple_repeat 3 43 0 2 632 360 64 0 0 chr3L 6162256 6162303 -18381254 + (TA)n Simple_repeat Simple_repeat 2 48 0 2 632 327 25 0 0 chr3L 6162632 6162672 -18380885 + (T)n Simple_repeat Simple_repeat 1 40 0 2 632 219 158 52 17 chr3L 6162750 6162808 -18380749 + (TATG)n Simple_repeat Simple_repeat 1 60 0 2 632 31 82 0 0 chr3L 6178309 6178382 -18365175 + AT_rich Low_complexity Low_complexity 1 73 0 2 632 21 71 0 0 chr3L 6179074 6179116 -18364441 + AT_rich Low_complexity Low_complexity 1 42 0 2 632 215 216 0 0 chr3L 6181598 6181649 -18361908 + CT-rich Low_complexity Low_complexity 3 53 0 2 632 29 47 0 0 chr3L 6182345 6182388 -18361169 + AT_rich Low_complexity Low_complexity 1 43 0 2 632 23 33 0 0 chr3L 6182673 6182703 -18360854 + AT_rich Low_complexity Low_complexity 1 30 0 2 632 21 95 0 0 chr3L 6186482 6186545 -18357012 + AT_rich Low_complexity Low_complexity 1 63 0 2 632 38 61 0 0 chr3L 6187996 6188062 -18355495 + AT_rich Low_complexity Low_complexity 1 66 0 2 632 24 32 0 0 chr3L 6192004 6192035 -18351522 + AT_rich Low_complexity Low_complexity 1 31 0 2 632 23 54 0 0 chr3L 6196171 6196208 -18347349 + AT_rich Low_complexity Low_complexity 1 37 0 2 632 285 250 0 0 chr3L 6198522 6198606 -18344951 + (TTG)n Simple_repeat Simple_repeat 3 86 0 2 632 182 22 133 0 chr3L 6205058 6205103 -18338454 + (TATAA)n Simple_repeat Simple_repeat 5 55 0 2 632 27 81 0 0 chr3L 6213082 6213144 -18330413 + AT_rich Low_complexity Low_complexity 1 62 0 2 632 3971 5 0 0 chr3L 6214069 6214497 -18329060 + ROO_LTR LTR Pao 1 428 0 2 632 74394 1 4 2 chr3L 6214497 6222735 -18320822 + ROO_I LTR Pao 1 8256 0 2 632 3994 2 0 0 chr3L 6222735 6223163 -18320394 + ROO_LTR LTR Pao 1 428 0 2 632 33 25 0 0 chr3L 6231887 6231927 -18311630 + AT_rich Low_complexity Low_complexity 1 40 0 2 632 26 0 0 0 chr3L 6236938 6236964 -18306593 + AT_rich Low_complexity Low_complexity 1 26 0 2 632 21 57 0 0 chr3L 6237885 6237920 -18305637 + AT_rich Low_complexity Low_complexity 1 35 0 2 632 35 54 0 0 chr3L 6240932 6240988 -18302569 + AT_rich Low_complexity Low_complexity 1 56 0 2 632 209 179 0 0 chr3L 6241095 6241134 -18302423 + (CTG)n Simple_repeat Simple_repeat 3 41 0 2 632 23 33 0 0 chr3L 6245297 6245327 -18298230 + AT_rich Low_complexity Low_complexity 1 30 0 2 632 50 0 0 0 chr3L 6246537 6246587 -18296970 + AT_rich Low_complexity Low_complexity 1 50 0 2 632 201 147 0 0 chr3L 6249592 6249626 -18293931 + (CAGCT)n Simple_repeat Simple_repeat 5 38 0 2 632 29 28 0 0 chr3L 6249968 6250004 -18293553 + AT_rich Low_complexity Low_complexity 1 36 0 2 632 22 94 0 0 chr3L 6250350 6250414 -18293143 + AT_rich Low_complexity Low_complexity 1 64 0 2 632 21 57 0 0 chr3L 6253996 6254031 -18289526 + AT_rich Low_complexity Low_complexity 1 35 0 2 632 22 35 0 0 chr3L 6259624 6259653 -18283904 + AT_rich Low_complexity Low_complexity 1 29 0 2 632 186 118 0 0 chr3L 6259896 6259930 -18283627 + (TG)n Simple_repeat Simple_repeat 2 35 0 2 632 243 110 13 76 chr3L 6264661 6264740 -18278817 + ROO_I LTR Pao 661 734 -7522 2 632 276 30 0 0 chr3L 6264868 6264901 -18278656 + (CTG)n Simple_repeat Simple_repeat 1 33 0 2 632 253 220 0 0 chr3L 6265367 6265426 -18278131 + (CAA)n Simple_repeat Simple_repeat 3 61 0 2 632 211 292 10 20 chr3L 6266354 6266452 -18277105 + (CAA)n Simple_repeat Simple_repeat 3 99 0 2 632 21 36 0 0 chr3L 6267365 6267393 -18276164 + AT_rich Low_complexity Low_complexity 1 28 0 2 632 202 234 0 15 chr3L 6268143 6268208 -18275349 + A-rich Low_complexity Low_complexity 1 64 0 2 632 221 57 0 28 chr3L 6268346 6268382 -18275175 + (TATAG)n Simple_repeat Simple_repeat 1 35 0 2 632 22 80 0 0 chr3L 6268727 6268777 -18274780 + AT_rich Low_complexity Low_complexity 1 50 0 2 632 340 155 102 46 chr3L 6269345 6269453 -18274104 + ROO_I LTR Pao 619 732 -7524 2 632 28 61 0 0 chr3L 6270095 6270144 -18273413 + AT_rich Low_complexity Low_complexity 1 49 0 2 632 237 188 0 20 chr3L 6270554 6270603 -18272954 + (CAA)n Simple_repeat Simple_repeat 3 50 0 2 632 23 0 0 0 chr3L 6272049 6272072 -18271485 + AT_rich Low_complexity Low_complexity 1 23 0 2 632 21 0 0 0 chr3L 6273439 6273460 -18270097 + AT_rich Low_complexity Low_complexity 1 21 0 2 632 266 326 0 23 chr3L 6274342 6274430 -18269127 + (TTCGGG)n Simple_repeat Simple_repeat 5 90 0 2 632 240 35 0 0 chr3L 6276227 6276256 -18267301 + (TAGG)n Simple_repeat Simple_repeat 3 31 0 2 632 22 56 0 0 chr3L 6276541 6276577 -18266980 + AT_rich Low_complexity Low_complexity 1 36 0 2 632 27 96 0 0 chr3L 6278099 6278182 -18265375 + AT_rich Low_complexity Low_complexity 1 83 0 2 632 303 85 0 0 chr3L 6279335 6279382 -18264175 + (CTG)n Simple_repeat Simple_repeat 1 47 0 2 632 227 79 26 0 chr3L 6279806 6279844 -18263713 + (CAG)n Simple_repeat Simple_repeat 3 41 0 2 632 180 111 0 0 chr3L 6280103 6280130 -18263427 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2 632 208 196 0 21 chr3L 6282057 6282104 -18261453 + (TTG)n Simple_repeat Simple_repeat 1 46 0 2 632 304 260 14 0 chr3L 6282192 6282265 -18261292 + (CCCCAA)n Simple_repeat Simple_repeat 5 78 0 2 632 31 44 0 0 chr3L 6284348 6284393 -18259164 + AT_rich Low_complexity Low_complexity 1 45 0 2 632 243 103 0 0 chr3L 6285153 6285192 -18258365 + (CAG)n Simple_repeat Simple_repeat 1 39 0 2 632 25 0 0 0 chr3L 6285578 6285603 -18257954 + AT_rich Low_complexity Low_complexity 1 25 0 2 632 195 42 0 0 chr3L 6285970 6285994 -18257563 + (CAT)n Simple_repeat Simple_repeat 1 24 0 2 632 247 170 0 36 chr3L 6288997 6289052 -18254505 + (CTTCG)n Simple_repeat Simple_repeat 4 56 0 2 632 214 167 0 0 chr3L 6290157 6290193 -18253364 + (CTG)n Simple_repeat Simple_repeat 3 38 0 2 633 46 54 0 0 chr3L 6292498 6292572 -18250985 + AT_rich Low_complexity Low_complexity 1 74 0 2 633 22 35 0 0 chr3L 6295459 6295488 -18248069 + AT_rich Low_complexity Low_complexity 1 29 0 2 633 210 71 0 0 chr3L 6297337 6297365 -18246192 + (CAG)n Simple_repeat Simple_repeat 3 30 0 2 633 228 35 0 0 chr3L 6297903 6297932 -18245625 + (CAGC)n Simple_repeat Simple_repeat 4 32 0 2 633 211 195 0 0 chr3L 6298086 6298127 -18245430 + (CTTTG)n Simple_repeat Simple_repeat 4 44 0 2 633 211 185 0 53 chr3L 6299275 6299332 -18244225 + (GCTG)n Simple_repeat Simple_repeat 3 56 0 2 633 28 48 0 0 chr3L 6301825 6301867 -18241690 + AT_rich Low_complexity Low_complexity 1 42 0 2 633 249 151 0 0 chr3L 6302110 6302163 -18241394 + (CAG)n Simple_repeat Simple_repeat 1 53 0 2 633 261 264 0 14 chr3L 6302301 6302374 -18241183 + (TTG)n Simple_repeat Simple_repeat 3 74 0 2 633 23 0 0 0 chr3L 6304085 6304108 -18239449 + AT_rich Low_complexity Low_complexity 1 23 0 2 633 23 0 0 0 chr3L 6304926 6304949 -18238608 + AT_rich Low_complexity Low_complexity 1 23 0 2 633 216 167 0 45 chr3L 6305313 6305357 -18238200 + (CAAA)n Simple_repeat Simple_repeat 1 42 0 2 633 186 43 0 0 chr3L 6306098 6306121 -18237436 + (CGGA)n Simple_repeat Simple_repeat 1 23 0 2 633 33 0 0 0 chr3L 6306206 6306239 -18237318 + AT_rich Low_complexity Low_complexity 1 33 0 2 633 26 82 0 0 chr3L 6307422 6307483 -18236074 + AT_rich Low_complexity Low_complexity 1 61 0 2 633 1588 74 69 0 chr3L 6308255 6308471 -18235086 - DNAREP1_DM LINE Penelope -9 585 355 2 633 1079 78 39 0 chr3L 6308467 6308621 -18234936 - DNAREP1_DM LINE Penelope -433 161 2 2 633 25 31 0 0 chr3L 6308923 6308955 -18234602 + AT_rich Low_complexity Low_complexity 1 32 0 2 633 28 29 0 0 chr3L 6310827 6310862 -18232695 + AT_rich Low_complexity Low_complexity 1 35 0 2 633 27 0 0 0 chr3L 6310959 6310986 -18232571 + AT_rich Low_complexity Low_complexity 1 27 0 2 633 226 246 0 0 chr3L 6324376 6324441 -18219116 - ROO_I LTR Pao -7524 732 668 2 633 36 62 0 0 chr3L 6327153 6327217 -18216340 + AT_rich Low_complexity Low_complexity 1 64 0 2 633 3605 5 7 7 chr3L 6328164 6328578 -18214979 - DM297_LTR LTR Gypsy 0 414 1 2 633 35 41 0 0 chr3L 6333250 6333299 -18210258 + AT_rich Low_complexity Low_complexity 1 49 0 2 633 23 0 0 0 chr3L 6339587 6339610 -18203947 + AT_rich Low_complexity Low_complexity 1 23 0 2 633 255 41 61 0 chr3L 6344859 6344908 -18198649 + (TTTTTG)n Simple_repeat Simple_repeat 1 52 0 2 633 195 100 0 0 chr3L 6348927 6348957 -18194600 + (CAGC)n Simple_repeat Simple_repeat 3 32 0 2 633 198 191 0 0 chr3L 6350846 6350888 -18192669 + (CAA)n Simple_repeat Simple_repeat 3 44 0 2 633 225 163 0 0 chr3L 6352158 6352207 -18191350 + (CAG)n Simple_repeat Simple_repeat 3 51 0 2 633 25 0 0 0 chr3L 6354982 6355007 -18188550 + AT_rich Low_complexity Low_complexity 1 25 0 2 633 25 0 0 0 chr3L 6358460 6358485 -18185072 + AT_rich Low_complexity Low_complexity 1 25 0 2 633 52 30 0 0 chr3L 6360021 6360087 -18183470 + AT_rich Low_complexity Low_complexity 1 66 0 2 633 29 60 0 0 chr3L 6362887 6362937 -18180620 + AT_rich Low_complexity Low_complexity 1 50 0 2 633 26 64 0 0 chr3L 6363770 6363817 -18179740 + AT_rich Low_complexity Low_complexity 1 47 0 2 633 203 164 36 18 chr3L 6367650 6367706 -18175851 + (ATCG)n Simple_repeat Simple_repeat 2 58 0 2 633 188 122 24 0 chr3L 6367967 6368008 -18175549 + (GAATG)n Simple_repeat Simple_repeat 2 43 0 2 633 26 50 0 0 chr3L 6374287 6374327 -18169230 + AT_rich Low_complexity Low_complexity 1 40 0 2 633 233 231 31 0 chr3L 6376964 6377029 -18166528 + (CA)n Simple_repeat Simple_repeat 2 68 0 2 633 24 32 0 0 chr3L 6378497 6378528 -18165029 + AT_rich Low_complexity Low_complexity 1 31 0 2 633 29 28 0 0 chr3L 6379342 6379378 -18164179 + AT_rich Low_complexity Low_complexity 1 36 0 2 633 405 284 66 47 chr3L 6379454 6379712 -18163845 - SAR_DM Satellite Satellite -594 878 616 2 633 381 245 78 2 chr3L 6379630 6379788 -18163769 + XDMR Unknown Unknown 6 158 -203 2 633 22 0 0 0 chr3L 6382747 6382769 -18160788 + AT_rich Low_complexity Low_complexity 1 22 0 2 633 217 305 0 0 chr3L 6384386 6384468 -18159089 + (CCCCAA)n Simple_repeat Simple_repeat 5 86 0 2 633 31 0 0 0 chr3L 6384561 6384592 -18158965 + AT_rich Low_complexity Low_complexity 1 31 0 2 633 222 91 0 0 chr3L 6385927 6385960 -18157597 + (AAGTG)n Simple_repeat Simple_repeat 5 37 0 2 633 21 36 0 0 chr3L 6387571 6387599 -18155958 + AT_rich Low_complexity Low_complexity 1 28 0 2 633 210 118 0 0 chr3L 6387997 6388031 -18155526 + (A)n Simple_repeat Simple_repeat 1 34 0 2 633 21 0 0 0 chr3L 6389720 6389741 -18153816 + AT_rich Low_complexity Low_complexity 1 21 0 2 633 186 143 0 0 chr3L 6389884 6389919 -18153638 + (GGATG)n Simple_repeat Simple_repeat 4 38 0 2 633 201 108 0 0 chr3L 6390088 6390125 -18153432 + (TCCA)n Simple_repeat Simple_repeat 2 38 0 2 633 22 0 0 0 chr3L 6396250 6396272 -18147285 + AT_rich Low_complexity Low_complexity 1 22 0 2 633 212 184 20 0 chr3L 6398211 6398260 -18145297 + A-rich Low_complexity Low_complexity 2 51 0 2 633 3931 0 0 0 chr3L 6398813 6399241 -18144316 + ROO_LTR LTR Pao 1 428 0 2 633 73320 0 1 0 chr3L 6399241 6407485 -18136072 + ROO_I LTR Pao 1 8256 0 2 633 3874 7 0 0 chr3L 6407485 6407913 -18135644 + ROO_LTR LTR Pao 1 428 0 2 633 72627 2 3 0 chr3L 6407913 6416141 -18127416 + ROO_I LTR Pao 1 8256 0 2 633 3907 2 0 0 chr3L 6416141 6416569 -18126988 + ROO_LTR LTR Pao 1 428 0 2 79 72942 0 4 0 chr3L 6416569 6424791 -18118766 + ROO_I LTR Pao 1 8256 0 2 634 3931 0 0 0 chr3L 6424791 6425219 -18118338 + ROO_LTR LTR Pao 1 428 0 2 634 240 86 0 0 chr3L 6426314 6426349 -18117208 + (CAG)n Simple_repeat Simple_repeat 3 37 0 2 634 21 36 0 0 chr3L 6427257 6427285 -18116272 + AT_rich Low_complexity Low_complexity 1 28 0 2 634 198 0 0 0 chr3L 6429876 6429898 -18113659 + (CATATA)n Simple_repeat Simple_repeat 1 22 0 2 634 28 61 0 0 chr3L 6430837 6430886 -18112671 + AT_rich Low_complexity Low_complexity 1 49 0 2 634 23 54 0 0 chr3L 6430969 6431006 -18112551 + AT_rich Low_complexity Low_complexity 1 37 0 2 634 227 233 13 40 chr3L 6431377 6431453 -18112104 + T-rich Low_complexity Low_complexity 3 76 0 2 634 24 67 0 0 chr3L 6433770 6433815 -18109742 + AT_rich Low_complexity Low_complexity 1 45 0 2 634 249 33 0 0 chr3L 6435947 6435977 -18107580 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2 634 21 36 0 0 chr3L 6436330 6436358 -18107199 + AT_rich Low_complexity Low_complexity 1 28 0 2 634 306 0 0 0 chr3L 6436810 6436844 -18106713 + (T)n Simple_repeat Simple_repeat 1 34 0 2 634 21 36 0 0 chr3L 6439178 6439206 -18104351 + AT_rich Low_complexity Low_complexity 1 28 0 2 634 192 77 0 0 chr3L 6443060 6443086 -18100471 + (ACCG)n Simple_repeat Simple_repeat 3 28 0 2 634 303 71 0 0 chr3L 6444188 6444230 -18099327 + (ATG)n Simple_repeat Simple_repeat 1 42 0 2 634 291 71 0 0 chr3L 6444827 6444869 -18098688 + (CAGT)n Simple_repeat Simple_repeat 3 44 0 2 634 214 140 0 57 chr3L 6444960 6445013 -18098544 + (CAG)n Simple_repeat Simple_repeat 3 52 0 2 634 23 54 0 0 chr3L 6447704 6447741 -18095816 + AT_rich Low_complexity Low_complexity 1 37 0 2 634 28 29 0 0 chr3L 6448718 6448753 -18094804 + AT_rich Low_complexity Low_complexity 1 35 0 2 634 288 215 32 0 chr3L 6448851 6448944 -18094613 - ROO_I LTR Pao -7518 738 643 2 634 23 54 0 0 chr3L 6449511 6449548 -18094009 + AT_rich Low_complexity Low_complexity 1 37 0 2 634 294 138 0 0 chr3L 6449995 6450053 -18093504 + (CAGT)n Simple_repeat Simple_repeat 1 58 0 2 634 250 339 0 0 chr3L 6450439 6450569 -18092988 + A-rich Low_complexity Low_complexity 1 130 0 2 634 26 0 0 0 chr3L 6456270 6456296 -18087261 + AT_rich Low_complexity Low_complexity 1 26 0 2 634 232 120 0 39 chr3L 6457944 6457996 -18085561 + (CAAAC)n Simple_repeat Simple_repeat 2 51 0 2 634 24 32 0 0 chr3L 6459919 6459950 -18083607 + AT_rich Low_complexity Low_complexity 1 31 0 2 634 26 0 0 0 chr3L 6460008 6460034 -18083523 + AT_rich Low_complexity Low_complexity 1 26 0 2 634 23 0 0 0 chr3L 6466036 6466059 -18077498 + AT_rich Low_complexity Low_complexity 1 23 0 2 634 243 152 0 0 chr3L 6466919 6466965 -18076592 + (CTG)n Simple_repeat Simple_repeat 3 48 0 2 634 24 0 0 0 chr3L 6470475 6470499 -18073058 + AT_rich Low_complexity Low_complexity 1 24 0 2 634 201 147 0 0 chr3L 6471538 6471572 -18071985 + (TCCG)n Simple_repeat Simple_repeat 4 37 0 2 634 194 62 31 0 chr3L 6475209 6475241 -18068316 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 2 634 189 0 0 0 chr3L 6478974 6478995 -18064562 + (CA)n Simple_repeat Simple_repeat 2 22 0 2 634 200 216 0 0 chr3L 6489195 6489232 -18054325 + (TG)n Simple_repeat Simple_repeat 1 37 0 2 634 201 171 0 0 chr3L 6491021 6491056 -18052501 + T-rich Low_complexity Low_complexity 1 35 0 2 634 24 32 0 0 chr3L 6492724 6492755 -18050802 + AT_rich Low_complexity Low_complexity 1 31 0 2 634 333 0 0 0 chr3L 6496063 6496100 -18047457 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 634 40 49 0 0 chr3L 6496564 6496625 -18046932 + AT_rich Low_complexity Low_complexity 1 61 0 2 634 214 254 17 0 chr3L 6497023 6497082 -18046475 + (CA)n Simple_repeat Simple_repeat 1 60 0 2 634 191 62 0 59 chr3L 6503487 6503521 -18040036 + (CTATA)n Simple_repeat Simple_repeat 5 36 0 2 634 21 36 0 0 chr3L 6506010 6506038 -18037519 + AT_rich Low_complexity Low_complexity 1 28 0 2 634 192 158 0 0 chr3L 6507613 6507651 -18035906 + (ATG)n Simple_repeat Simple_repeat 2 39 0 2 634 189 0 0 0 chr3L 6509349 6509370 -18034187 + (TG)n Simple_repeat Simple_repeat 2 22 0 2 634 207 100 0 0 chr3L 6514501 6514531 -18029026 + (CTG)n Simple_repeat Simple_repeat 3 32 0 2 634 180 0 0 0 chr3L 6514588 6514608 -18028949 + (CTG)n Simple_repeat Simple_repeat 2 21 0 2 634 25 31 0 0 chr3L 6514966 6514998 -18028559 + AT_rich Low_complexity Low_complexity 1 32 0 2 634 249 33 0 0 chr3L 6518179 6518209 -18025348 + (CAG)n Simple_repeat Simple_repeat 3 32 0 2 634 211 211 0 0 chr3L 6519054 6519092 -18024465 + (TG)n Simple_repeat Simple_repeat 1 38 0 2 634 197 163 0 20 chr3L 6519636 6519686 -18023871 + (CA)n Simple_repeat Simple_repeat 1 49 0 2 634 216 0 0 0 chr3L 6527943 6527967 -18015590 + (CA)n Simple_repeat Simple_repeat 1 24 0 2 634 32 0 0 0 chr3L 6532500 6532532 -18011025 + AT_rich Low_complexity Low_complexity 1 32 0 2 634 22 35 0 0 chr3L 6533575 6533604 -18009953 + AT_rich Low_complexity Low_complexity 1 29 0 2 634 21 0 0 0 chr3L 6534123 6534144 -18009413 + AT_rich Low_complexity Low_complexity 1 21 0 2 634 261 83 0 0 chr3L 6534624 6534660 -18008897 + (CAGA)n Simple_repeat Simple_repeat 4 39 0 2 634 206 170 21 0 chr3L 6534816 6534863 -18008694 + (CA)n Simple_repeat Simple_repeat 2 49 0 2 634 312 27 0 0 chr3L 6535965 6536002 -18007555 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 634 204 67 0 0 chr3L 6540738 6540768 -18002789 + (A)n Simple_repeat Simple_repeat 1 30 0 2 634 219 219 0 0 chr3L 6540997 6541038 -18002519 + (TG)n Simple_repeat Simple_repeat 2 42 0 2 634 27 0 0 0 chr3L 6543685 6543712 -17999845 + AT_rich Low_complexity Low_complexity 1 27 0 2 634 25 83 0 0 chr3L 6545324 6545384 -17998173 + AT_rich Low_complexity Low_complexity 1 60 0 2 635 25 51 0 0 chr3L 6554967 6555006 -17988551 + AT_rich Low_complexity Low_complexity 1 39 0 2 635 250 127 0 0 chr3L 6561932 6561987 -17981570 - ROO_I LTR Pao -7551 705 651 2 635 24 53 0 0 chr3L 6562689 6562727 -17980830 + AT_rich Low_complexity Low_complexity 1 38 0 2 635 21 57 0 0 chr3L 6566225 6566260 -17977297 + AT_rich Low_complexity Low_complexity 1 35 0 2 635 27 29 0 0 chr3L 6570535 6570569 -17972988 + AT_rich Low_complexity Low_complexity 1 34 0 2 635 22 56 0 0 chr3L 6571441 6571477 -17972080 + AT_rich Low_complexity Low_complexity 1 36 0 2 635 198 71 0 0 chr3L 6582636 6582664 -17960893 + (CAG)n Simple_repeat Simple_repeat 2 29 0 2 635 285 164 32 32 chr3L 6586050 6586113 -17957444 + DNAREP1_DM LINE Penelope 1 63 -531 2 635 22 0 0 0 chr3L 6606486 6606508 -17937049 + AT_rich Low_complexity Low_complexity 1 22 0 2 635 26 0 0 0 chr3L 6607408 6607434 -17936123 + AT_rich Low_complexity Low_complexity 1 26 0 2 635 21 0 0 0 chr3L 6607962 6607983 -17935574 + AT_rich Low_complexity Low_complexity 1 21 0 2 635 198 0 0 0 chr3L 6608387 6608409 -17935148 + (A)n Simple_repeat Simple_repeat 1 22 0 2 635 25 31 0 0 chr3L 6608874 6608906 -17934651 + AT_rich Low_complexity Low_complexity 1 32 0 2 635 24 53 0 0 chr3L 6610504 6610542 -17933015 + AT_rich Low_complexity Low_complexity 1 38 0 2 635 25 31 0 0 chr3L 6610672 6610704 -17932853 + AT_rich Low_complexity Low_complexity 1 32 0 2 635 231 133 0 0 chr3L 6611111 6611156 -17932401 + (GGA)n Simple_repeat Simple_repeat 1 45 0 2 635 193 128 0 41 chr3L 6611792 6611841 -17931716 + (CATA)n Simple_repeat Simple_repeat 1 47 0 2 635 22 0 0 0 chr3L 6612232 6612254 -17931303 + AT_rich Low_complexity Low_complexity 1 22 0 2 635 24 0 0 0 chr3L 6613666 6613690 -17929867 + AT_rich Low_complexity Low_complexity 1 24 0 2 635 3373 0 0 0 chr3L 6613743 6614103 -17929454 - DMRT1B LINE R1 0 5183 4824 2 635 224 205 0 0 chr3L 6614112 6614151 -17929406 + (TG)n Simple_repeat Simple_repeat 1 39 0 2 635 201 74 0 0 chr3L 6614309 6614336 -17929221 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 635 21 36 0 0 chr3L 6616314 6616342 -17927215 + AT_rich Low_complexity Low_complexity 1 28 0 2 635 26 74 0 0 chr3L 6618596 6618650 -17924907 + AT_rich Low_complexity Low_complexity 1 54 0 2 635 21 36 0 0 chr3L 6618783 6618811 -17924746 + AT_rich Low_complexity Low_complexity 1 28 0 2 635 249 33 0 0 chr3L 6619036 6619066 -17924491 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 635 189 74 0 0 chr3L 6620189 6620216 -17923341 + (TAG)n Simple_repeat Simple_repeat 2 28 0 2 635 204 158 0 26 chr3L 6621098 6621137 -17922420 + (TTG)n Simple_repeat Simple_repeat 3 40 0 2 635 195 129 0 0 chr3L 6622830 6622861 -17920696 + (TG)n Simple_repeat Simple_repeat 2 32 0 2 635 226 229 0 16 chr3L 6623109 6623171 -17920386 + (TG)n Simple_repeat Simple_repeat 2 62 0 2 635 237 108 0 0 chr3L 6630563 6630600 -17912957 + (TA)n Simple_repeat Simple_repeat 2 38 0 2 635 255 61 0 0 chr3L 6633432 6633465 -17910092 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 635 186 43 0 0 chr3L 6633729 6633752 -17909805 + (TAAAA)n Simple_repeat Simple_repeat 3 25 0 2 635 39 0 0 0 chr3L 6636098 6636137 -17907420 + AT_rich Low_complexity Low_complexity 1 39 0 2 635 216 151 36 36 chr3L 6636517 6636572 -17906985 + A-rich Low_complexity Low_complexity 6 60 0 2 635 191 125 25 0 chr3L 6638590 6638630 -17904927 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 635 201 74 0 0 chr3L 6638885 6638912 -17904645 + (TG)n Simple_repeat Simple_repeat 2 28 0 2 635 207 213 0 21 chr3L 6639224 6639272 -17904285 + A-rich Low_complexity Low_complexity 5 51 0 2 635 22 0 0 0 chr3L 6642512 6642534 -17901023 + AT_rich Low_complexity Low_complexity 1 22 0 2 635 231 88 0 0 chr3L 6643169 6643203 -17900354 + (TG)n Simple_repeat Simple_repeat 1 34 0 2 635 207 0 0 0 chr3L 6646949 6646972 -17896585 + (TA)n Simple_repeat Simple_repeat 2 24 0 2 635 211 214 0 18 chr3L 6648445 6648502 -17895055 + (CTG)n Simple_repeat Simple_repeat 3 58 0 2 635 214 265 0 0 chr3L 6649941 6649990 -17893567 + (CACCAT)n Simple_repeat Simple_repeat 1 49 0 2 635 22 35 0 0 chr3L 6654994 6655023 -17888534 + AT_rich Low_complexity Low_complexity 1 29 0 2 635 26 30 0 0 chr3L 6656814 6656847 -17886710 + AT_rich Low_complexity Low_complexity 1 33 0 2 635 24 0 0 0 chr3L 6666221 6666245 -17877312 + AT_rich Low_complexity Low_complexity 1 24 0 2 635 21 0 0 0 chr3L 6666358 6666379 -17877178 + AT_rich Low_complexity Low_complexity 1 21 0 2 635 192 152 0 0 chr3L 6667433 6667466 -17876091 + (ATGGTG)n Simple_repeat Simple_repeat 5 37 0 2 635 22 0 0 0 chr3L 6667978 6668000 -17875557 + AT_rich Low_complexity Low_complexity 1 22 0 2 635 226 167 24 0 chr3L 6669374 6669416 -17874141 + (CAT)n Simple_repeat Simple_repeat 3 45 0 2 635 246 32 0 0 chr3L 6670091 6670122 -17873435 + (TA)n Simple_repeat Simple_repeat 1 31 0 2 635 189 74 0 0 chr3L 6673220 6673247 -17870310 + (CA)n Simple_repeat Simple_repeat 2 28 0 2 635 202 227 0 0 chr3L 6674369 6674413 -17869144 + (CACTT)n Simple_repeat Simple_repeat 3 46 0 2 635 222 193 0 0 chr3L 6676490 6676547 -17867010 + CT-rich Low_complexity Low_complexity 2 58 0 2 635 291 122 0 0 chr3L 6676688 6676737 -17866820 + (CTA)n Simple_repeat Simple_repeat 2 50 0 2 635 23 54 0 0 chr3L 6679221 6679258 -17864299 + AT_rich Low_complexity Low_complexity 1 37 0 2 635 303 71 0 0 chr3L 6679929 6679971 -17863586 + (ATG)n Simple_repeat Simple_repeat 1 42 0 2 635 22 94 0 0 chr3L 6684492 6684556 -17859001 + AT_rich Low_complexity Low_complexity 1 64 0 2 636 23 68 0 0 chr3L 6685411 6685455 -17858102 + AT_rich Low_complexity Low_complexity 1 44 0 2 636 21 0 0 0 chr3L 6686023 6686044 -17857513 + AT_rich Low_complexity Low_complexity 1 21 0 2 636 237 119 0 0 chr3L 6693036 6693078 -17850479 + (TA)n Simple_repeat Simple_repeat 2 43 0 2 636 34 42 0 0 chr3L 6695803 6695851 -17847706 + AT_rich Low_complexity Low_complexity 1 48 0 2 636 28 0 0 0 chr3L 6697251 6697279 -17846278 + AT_rich Low_complexity Low_complexity 1 28 0 2 636 180 77 0 0 chr3L 6698034 6698060 -17845497 + (A)n Simple_repeat Simple_repeat 1 26 0 2 636 30 27 0 0 chr3L 6700756 6700793 -17842764 + AT_rich Low_complexity Low_complexity 1 37 0 2 636 195 100 0 0 chr3L 6706516 6706546 -17837011 + (TA)n Simple_repeat Simple_repeat 2 31 0 2 636 23 68 0 0 chr3L 6707150 6707194 -17836363 + AT_rich Low_complexity Low_complexity 1 44 0 2 636 214 132 0 36 chr3L 6707226 6707281 -17836276 + (TAA)n Simple_repeat Simple_repeat 1 53 0 2 636 213 296 0 0 chr3L 6707315 6707386 -17836171 + T-rich Low_complexity Low_complexity 1 71 0 2 636 201 132 0 0 chr3L 6707630 6707668 -17835889 + (CTTTG)n Simple_repeat Simple_repeat 2 39 0 2 636 29 60 0 0 chr3L 6707825 6707875 -17835682 + AT_rich Low_complexity Low_complexity 1 50 0 2 636 240 59 0 0 chr3L 6710237 6710271 -17833286 + (GA)n Simple_repeat Simple_repeat 2 35 0 2 636 217 185 0 53 chr3L 6710539 6710596 -17832961 + A-rich Low_complexity Low_complexity 4 57 0 2 636 198 156 0 0 chr3L 6711572 6711617 -17831940 + T-rich Low_complexity Low_complexity 1 45 0 2 636 198 103 0 0 chr3L 6712824 6712853 -17830704 + (CAGC)n Simple_repeat Simple_repeat 4 32 0 2 636 24 0 0 0 chr3L 6713731 6713755 -17829802 + AT_rich Low_complexity Low_complexity 1 24 0 2 636 24 0 0 0 chr3L 6714323 6714347 -17829210 + AT_rich Low_complexity Low_complexity 1 24 0 2 636 183 42 0 0 chr3L 6714546 6714570 -17828987 + (TA)n Simple_repeat Simple_repeat 2 25 0 2 636 23 0 0 0 chr3L 6714713 6714736 -17828821 + AT_rich Low_complexity Low_complexity 1 23 0 2 636 22 0 0 0 chr3L 6715415 6715437 -17828120 + AT_rich Low_complexity Low_complexity 1 22 0 2 636 201 108 0 0 chr3L 6716231 6716268 -17827289 + (T)n Simple_repeat Simple_repeat 1 37 0 2 636 33 0 0 0 chr3L 6718773 6718806 -17824751 + AT_rich Low_complexity Low_complexity 1 33 0 2 636 25 31 0 0 chr3L 6721050 6721082 -17822475 + AT_rich Low_complexity Low_complexity 1 32 0 2 636 346 94 31 0 chr3L 6721790 6721854 -17821703 + (TA)n Simple_repeat Simple_repeat 2 67 0 2 636 27 0 0 0 chr3L 6722074 6722101 -17821456 + AT_rich Low_complexity Low_complexity 1 27 0 2 636 200 180 0 39 chr3L 6722636 6722688 -17820869 + (TAA)n Simple_repeat Simple_repeat 3 52 0 2 636 201 171 0 0 chr3L 6722837 6722872 -17820685 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 2 636 293 149 0 171 chr3L 6724337 6724466 -17819091 - ROO_I LTR Pao -7513 743 637 2 636 237 159 0 0 chr3L 6724561 6724605 -17818952 + (CTG)n Simple_repeat Simple_repeat 1 44 0 2 636 309 315 0 18 chr3L 6724987 6725155 -17818402 + (CTG)n Simple_repeat Simple_repeat 3 167 0 2 636 195 100 0 0 chr3L 6725199 6725229 -17818328 + (CTG)n Simple_repeat Simple_repeat 1 30 0 2 636 246 62 0 0 chr3L 6725408 6725440 -17818117 + (CTG)n Simple_repeat Simple_repeat 3 34 0 2 636 364 174 21 11 chr3L 6725743 6725836 -17817721 - ROO_I LTR Pao -7530 726 633 2 636 307 104 69 59 chr3L 6725861 6725963 -17817594 - ROO_I LTR Pao -7513 743 641 2 636 211 281 0 43 chr3L 6729104 6729197 -17814360 + CT-rich Low_complexity Low_complexity 2 90 0 2 636 273 169 0 0 chr3L 6729908 6729967 -17813590 + CT-rich Low_complexity Low_complexity 5 63 0 2 636 24 32 0 0 chr3L 6730403 6730434 -17813123 + AT_rich Low_complexity Low_complexity 1 31 0 2 636 192 77 0 0 chr3L 6730946 6730972 -17812585 + (TGG)n Simple_repeat Simple_repeat 1 26 0 2 636 257 161 0 31 chr3L 6731045 6731109 -17812448 + (TTG)n Simple_repeat Simple_repeat 3 64 0 2 636 242 274 0 0 chr3L 6731129 6731191 -17812366 + (TTG)n Simple_repeat Simple_repeat 2 63 0 2 636 243 176 20 0 chr3L 6732036 6732087 -17811470 + (CTG)n Simple_repeat Simple_repeat 1 52 0 2 636 273 209 0 0 chr3L 6732463 6732530 -17811027 + (TTG)n Simple_repeat Simple_repeat 3 69 0 2 636 219 36 0 0 chr3L 6732871 6732899 -17810658 + (TCG)n Simple_repeat Simple_repeat 3 30 0 2 636 351 136 0 0 chr3L 6733779 6733838 -17809719 + (CTG)n Simple_repeat Simple_repeat 3 61 0 2 636 21 0 0 0 chr3L 6736041 6736062 -17807495 + AT_rich Low_complexity Low_complexity 1 21 0 2 636 45 19 0 0 chr3L 6736578 6736630 -17806927 + AT_rich Low_complexity Low_complexity 1 52 0 2 636 366 80 0 0 chr3L 6742397 6742447 -17801110 + (CTG)n Simple_repeat Simple_repeat 1 50 0 2 636 253 82 20 20 chr3L 6742739 6742789 -17800768 + (CTG)n Simple_repeat Simple_repeat 1 50 0 2 636 226 57 0 0 chr3L 6742833 6742868 -17800689 - ROO_I LTR Pao -7570 686 652 2 636 273 277 0 0 chr3L 6743190 6743284 -17800273 + (CTG)n Simple_repeat Simple_repeat 1 94 0 2 636 245 182 0 93 chr3L 6743358 6743455 -17800102 - ROO_I LTR Pao -7528 728 641 2 636 232 299 0 0 chr3L 6743706 6743793 -17799764 + (CTG)n Simple_repeat Simple_repeat 1 87 0 2 636 305 147 44 0 chr3L 6743855 6743923 -17799634 - ROO_I LTR Pao -7522 734 664 2 636 294 194 29 58 chr3L 6743999 6744103 -17799454 - ROO_I LTR Pao -7519 737 637 2 636 353 174 0 0 chr3L 6744154 6744252 -17799305 - ROO_I LTR Pao -7518 738 641 2 636 23 0 0 0 chr3L 6744715 6744738 -17798819 + AT_rich Low_complexity Low_complexity 1 23 0 2 636 186 43 0 0 chr3L 6745826 6745849 -17797708 + (GAA)n Simple_repeat Simple_repeat 1 23 0 2 636 24 0 0 0 chr3L 6749673 6749697 -17793860 + AT_rich Low_complexity Low_complexity 1 24 0 2 636 22 35 0 0 chr3L 6751491 6751520 -17792037 + AT_rich Low_complexity Low_complexity 1 29 0 2 636 183 42 0 0 chr3L 6752250 6752274 -17791283 + (T)n Simple_repeat Simple_repeat 1 24 0 2 636 246 186 14 0 chr3L 6753044 6753114 -17790443 - ROO_I LTR Pao -7518 738 668 2 636 25 90 0 0 chr3L 6755859 6755926 -17787631 + AT_rich Low_complexity Low_complexity 1 67 0 2 636 28 48 0 0 chr3L 6756771 6756813 -17786744 + AT_rich Low_complexity Low_complexity 1 42 0 2 636 31 58 0 0 chr3L 6756938 6756990 -17786567 + AT_rich Low_complexity Low_complexity 1 52 0 2 636 34 96 0 0 chr3L 6758352 6758456 -17785101 + AT_rich Low_complexity Low_complexity 1 104 0 2 636 198 0 0 0 chr3L 6759588 6759610 -17783947 + (GGA)n Simple_repeat Simple_repeat 2 23 0 2 636 195 42 0 0 chr3L 6759685 6759709 -17783848 + (AACTG)n Simple_repeat Simple_repeat 5 28 0 2 636 26 30 0 0 chr3L 6762823 6762856 -17780701 + AT_rich Low_complexity Low_complexity 1 33 0 2 636 189 0 0 0 chr3L 6763075 6763096 -17780461 + (TGGA)n Simple_repeat Simple_repeat 2 22 0 2 636 216 0 0 0 chr3L 6763428 6763452 -17780105 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2 636 346 137 0 27 chr3L 6767427 6767502 -17776055 + ROO_I LTR Pao 641 713 -7543 2 636 24 67 0 0 chr3L 6768257 6768302 -17775255 + AT_rich Low_complexity Low_complexity 1 45 0 2 636 183 184 0 0 chr3L 6771141 6771179 -17772378 + (TA)n Simple_repeat Simple_repeat 1 38 0 2 636 21 36 0 0 chr3L 6771574 6771602 -17771955 + AT_rich Low_complexity Low_complexity 1 28 0 2 636 22 0 0 0 chr3L 6772994 6773016 -17770541 + AT_rich Low_complexity Low_complexity 1 22 0 2 636 17955 1 0 1 chr3L 6774278 6776227 -17767330 - DOC LINE Jockey 0 4725 2778 2 636 21 0 0 0 chr3L 6777293 6777314 -17766243 + AT_rich Low_complexity Low_complexity 1 21 0 2 636 23 0 0 0 chr3L 6777755 6777778 -17765779 + AT_rich Low_complexity Low_complexity 1 23 0 2 636 22 0 0 0 chr3L 6781616 6781638 -17761919 + AT_rich Low_complexity Low_complexity 1 22 0 2 636 495 95 0 0 chr3L 6785278 6785352 -17758205 + (CAG)n Simple_repeat Simple_repeat 1 74 0 2 636 336 188 0 0 chr3L 6785458 6785527 -17758030 + (CAA)n Simple_repeat Simple_repeat 2 70 0 2 636 233 177 16 31 chr3L 6785540 6785604 -17757953 + (CAG)n Simple_repeat Simple_repeat 2 64 0 2 636 282 132 0 0 chr3L 6785884 6785937 -17757620 + (CCA)n Simple_repeat Simple_repeat 1 53 0 2 636 23 0 0 0 chr3L 6787057 6787080 -17756477 + AT_rich Low_complexity Low_complexity 1 23 0 2 636 24 67 0 0 chr3L 6787335 6787380 -17756177 + AT_rich Low_complexity Low_complexity 1 45 0 2 636 201 203 0 78 chr3L 6787968 6788032 -17755525 + A-rich Low_complexity Low_complexity 1 59 0 2 636 198 71 0 0 chr3L 6789492 6789520 -17754037 + (CA)n Simple_repeat Simple_repeat 2 29 0 2 636 237 307 11 0 chr3L 6790346 6790434 -17753123 + (CAG)n Simple_repeat Simple_repeat 3 91 0 2 636 31 0 0 0 chr3L 6790683 6790714 -17752843 + AT_rich Low_complexity Low_complexity 1 31 0 2 636 21 0 0 75 chr3L 6790722 6790762 -17752795 + AT_rich Low_complexity Low_complexity 1 37 0 2 636 216 179 0 0 chr3L 6791478 6791517 -17752040 + (TGG)n Simple_repeat Simple_repeat 2 40 0 2 636 276 172 0 0 chr3L 6793120 6793178 -17750379 + (AACTG)n Simple_repeat Simple_repeat 3 60 0 2 636 30 0 0 0 chr3L 6793770 6793800 -17749757 + AT_rich Low_complexity Low_complexity 1 30 0 2 636 22 0 0 0 chr3L 6795895 6795917 -17747640 + AT_rich Low_complexity Low_complexity 1 22 0 2 636 21 71 0 0 chr3L 6797358 6797400 -17746157 + AT_rich Low_complexity Low_complexity 1 42 0 2 636 32 0 0 0 chr3L 6797856 6797888 -17745669 + AT_rich Low_complexity Low_complexity 1 32 0 2 636 186 43 0 0 chr3L 6798666 6798689 -17744868 + (CAG)n Simple_repeat Simple_repeat 3 25 0 2 636 248 53 26 0 chr3L 6798789 6798827 -17744730 + (AACTG)n Simple_repeat Simple_repeat 2 40 0 2 636 24 0 0 0 chr3L 6799821 6799845 -17743712 + AT_rich Low_complexity Low_complexity 1 24 0 2 636 23 68 0 0 chr3L 6802109 6802153 -17741404 + AT_rich Low_complexity Low_complexity 1 44 0 2 636 24 32 0 0 chr3L 6803516 6803547 -17740010 + AT_rich Low_complexity Low_complexity 1 31 0 2 636 24 67 0 0 chr3L 6804836 6804881 -17738676 + AT_rich Low_complexity Low_complexity 1 45 0 2 636 234 62 0 0 chr3L 6805909 6805941 -17737616 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2 636 27 0 0 0 chr3L 6810306 6810333 -17733224 + AT_rich Low_complexity Low_complexity 1 27 0 2 636 21 57 0 0 chr3L 6812182 6812217 -17731340 + AT_rich Low_complexity Low_complexity 1 35 0 2 636 34 24 0 0 chr3L 6812387 6812428 -17731129 + AT_rich Low_complexity Low_complexity 1 41 0 2 636 212 231 0 0 chr3L 6812732 6812784 -17730773 + (GGATG)n Simple_repeat Simple_repeat 4 55 0 2 636 228 143 0 0 chr3L 6814030 6814072 -17729485 + (ACTG)n Simple_repeat Simple_repeat 4 45 0 2 636 26 0 0 0 chr3L 6814855 6814881 -17728676 + AT_rich Low_complexity Low_complexity 1 26 0 2 636 204 152 0 21 chr3L 6815244 6815291 -17728266 + (ATTCG)n Simple_repeat Simple_repeat 5 50 0 2 637 26 30 0 0 chr3L 6817032 6817065 -17726492 + AT_rich Low_complexity Low_complexity 1 33 0 2 637 192 40 0 0 chr3L 6818002 6818027 -17725530 + (TA)n Simple_repeat Simple_repeat 1 25 0 2 637 24 0 0 0 chr3L 6818657 6818681 -17724876 + AT_rich Low_complexity Low_complexity 1 24 0 2 637 234 193 0 0 chr3L 6822048 6822105 -17721452 + (TTG)n Simple_repeat Simple_repeat 3 59 0 2 637 32 0 0 0 chr3L 6822369 6822401 -17721156 + AT_rich Low_complexity Low_complexity 1 32 0 2 637 212 184 0 0 chr3L 6824404 6824442 -17719115 + T-rich Low_complexity Low_complexity 5 42 0 2 637 180 0 0 0 chr3L 6826162 6826182 -17717375 + (CA)n Simple_repeat Simple_repeat 2 21 0 2 637 232 176 0 0 chr3L 6827521 6827572 -17715985 + ROO_I LTR Pao 683 733 -7523 2 637 252 0 0 0 chr3L 6828527 6828555 -17715002 + (A)n Simple_repeat Simple_repeat 1 28 0 2 637 21 0 0 0 chr3L 6829077 6829098 -17714459 + AT_rich Low_complexity Low_complexity 1 21 0 2 637 231 170 0 0 chr3L 6830471 6830518 -17713039 + (TG)n Simple_repeat Simple_repeat 2 48 0 2 637 189 0 0 0 chr3L 6833117 6833138 -17710419 + (AGTTG)n Simple_repeat Simple_repeat 2 22 0 2 637 180 77 0 0 chr3L 6838951 6838977 -17704580 + (CA)n Simple_repeat Simple_repeat 1 26 0 2 637 21 36 0 0 chr3L 6840622 6840650 -17702907 + AT_rich Low_complexity Low_complexity 1 28 0 2 637 231 203 0 0 chr3L 6840912 6840971 -17702586 + CT-rich Low_complexity Low_complexity 1 59 0 2 637 217 175 47 16 chr3L 6842018 6842082 -17701475 + A-rich Low_complexity Low_complexity 1 66 0 2 637 201 74 0 0 chr3L 6842227 6842254 -17701303 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 637 27 29 0 0 chr3L 6844562 6844596 -17698961 + AT_rich Low_complexity Low_complexity 1 34 0 2 637 308 250 0 0 chr3L 6845096 6845180 -17698377 - ROO_I LTR Pao -7524 732 649 2 637 367 257 74 92 chr3L 6845519 6845857 -17697700 - SAR_DM Satellite Satellite -644 828 497 2 637 184 170 0 36 chr3L 6846126 6846181 -17697376 + (CAG)n Simple_repeat Simple_repeat 3 55 0 2 637 22 0 0 0 chr3L 6846324 6846346 -17697211 + AT_rich Low_complexity Low_complexity 1 22 0 2 637 209 125 25 0 chr3L 6846409 6846449 -17697108 + (TG)n Simple_repeat Simple_repeat 1 41 0 2 637 31 26 0 0 chr3L 6846681 6846719 -17696838 + AT_rich Low_complexity Low_complexity 1 38 0 2 637 201 129 0 0 chr3L 6847453 6847484 -17696073 + (CA)n Simple_repeat Simple_repeat 1 31 0 2 637 225 154 0 0 chr3L 6848428 6848467 -17695090 + (CAG)n Simple_repeat Simple_repeat 3 41 0 2 637 43585 1 0 0 chr3L 6849077 6853802 -17689755 + DOC LINE Jockey 2 4724 -1 2 637 213 204 0 0 chr3L 6853969 6854013 -17689544 + (TG)n Simple_repeat Simple_repeat 2 45 0 2 637 24 32 0 0 chr3L 6860688 6860719 -17682838 + AT_rich Low_complexity Low_complexity 1 31 0 2 637 378 139 0 0 chr3L 6860931 6861003 -17682554 + (CAA)n Simple_repeat Simple_repeat 1 72 0 2 637 225 159 0 0 chr3L 6861198 6861242 -17682315 + ROO_I LTR Pao 685 728 -7528 2 637 327 85 0 0 chr3L 6861372 6861419 -17682138 + (CTG)n Simple_repeat Simple_repeat 1 47 0 2 637 249 193 53 0 chr3L 6865380 6865437 -17678120 + ROO_I LTR Pao 684 743 -7513 2 637 209 288 0 0 chr3L 6867581 6867647 -17675910 + T-rich Low_complexity Low_complexity 1 66 0 2 637 22 0 0 0 chr3L 6868901 6868923 -17674634 + AT_rich Low_complexity Low_complexity 1 22 0 2 637 24 53 0 0 chr3L 6874022 6874060 -17669497 + AT_rich Low_complexity Low_complexity 1 38 0 2 637 39 68 0 0 chr3L 6876366 6876440 -17667117 + AT_rich Low_complexity Low_complexity 1 74 0 2 637 21 57 0 0 chr3L 6878766 6878801 -17664756 + AT_rich Low_complexity Low_complexity 1 35 0 2 637 21 36 0 0 chr3L 6878841 6878869 -17664688 + AT_rich Low_complexity Low_complexity 1 28 0 2 637 34 79 0 0 chr3L 6878950 6879026 -17664531 + AT_rich Low_complexity Low_complexity 1 76 0 2 637 27 0 0 0 chr3L 6879655 6879682 -17663875 + AT_rich Low_complexity Low_complexity 1 27 0 2 637 21 0 0 0 chr3L 6879919 6879940 -17663617 + AT_rich Low_complexity Low_complexity 1 21 0 2 637 3960 2 0 2 chr3L 6880672 6881101 -17662456 + ROO_LTR LTR Pao 1 428 0 2 637 54145 1 4 5 chr3L 6881101 6887134 -17656423 + ROO_I LTR Pao 1 6027 -2229 2 637 4745 0 0 0 chr3L 6887131 6887678 -17655879 + ROO_I LTR Pao 7710 8256 0 2 637 3975 5 0 0 chr3L 6887678 6888106 -17655451 + ROO_LTR LTR Pao 1 428 0 2 637 21 36 0 0 chr3L 6888326 6888354 -17655203 + AT_rich Low_complexity Low_complexity 1 28 0 2 637 198 0 0 0 chr3L 6888501 6888523 -17655034 + (TG)n Simple_repeat Simple_repeat 2 23 0 2 637 23 33 0 0 chr3L 6888972 6889002 -17654555 + AT_rich Low_complexity Low_complexity 1 30 0 2 637 21 0 0 0 chr3L 6889368 6889389 -17654168 + AT_rich Low_complexity Low_complexity 1 21 0 2 637 201 162 0 0 chr3L 6889598 6889635 -17653922 + (CA)n Simple_repeat Simple_repeat 1 37 0 2 637 41 58 0 0 chr3L 6890665 6890734 -17652823 + AT_rich Low_complexity Low_complexity 1 69 0 2 637 192 97 0 0 chr3L 6891414 6891445 -17652112 + (GA)n Simple_repeat Simple_repeat 2 32 0 2 637 37 90 0 0 chr3L 6891792 6891892 -17651665 + AT_rich Low_complexity Low_complexity 1 100 0 2 637 189 74 0 0 chr3L 6893661 6893688 -17649869 + (CA)n Simple_repeat Simple_repeat 1 27 0 2 637 231 333 0 0 chr3L 6894541 6894625 -17648932 + (TG)n Simple_repeat Simple_repeat 1 84 0 2 637 21 0 0 0 chr3L 6895515 6895536 -17648021 + AT_rich Low_complexity Low_complexity 1 21 0 2 637 32 0 0 0 chr3L 6900534 6900566 -17642991 + AT_rich Low_complexity Low_complexity 1 32 0 2 637 209 235 0 29 chr3L 6900772 6900842 -17642715 + (TTG)n Simple_repeat Simple_repeat 1 68 0 2 637 213 150 25 0 chr3L 6901367 6901407 -17642150 + (CA)n Simple_repeat Simple_repeat 1 41 0 2 637 29 47 0 0 chr3L 6901834 6901877 -17641680 + AT_rich Low_complexity Low_complexity 1 43 0 2 637 22 35 0 0 chr3L 6903972 6904001 -17639556 + AT_rich Low_complexity Low_complexity 1 29 0 2 637 235 258 0 46 chr3L 6904222 6904287 -17639270 + C-rich Low_complexity Low_complexity 3 64 0 2 637 23 0 0 0 chr3L 6904852 6904875 -17638682 + AT_rich Low_complexity Low_complexity 1 23 0 2 637 31 26 0 0 chr3L 6904940 6904978 -17638579 + AT_rich Low_complexity Low_complexity 1 38 0 2 637 26 0 0 0 chr3L 6905117 6905143 -17638414 + AT_rich Low_complexity Low_complexity 1 26 0 2 637 21 57 0 0 chr3L 6907470 6907505 -17636052 + AT_rich Low_complexity Low_complexity 1 35 0 2 637 24 0 0 0 chr3L 6908861 6908885 -17634672 + AT_rich Low_complexity Low_complexity 1 24 0 2 637 229 118 19 19 chr3L 6909543 6909595 -17633962 + (CAAA)n Simple_repeat Simple_repeat 3 54 0 2 637 221 161 16 31 chr3L 6909966 6910030 -17633527 + A-rich Low_complexity Low_complexity 1 63 0 2 637 246 32 0 0 chr3L 6910254 6910285 -17633272 + (GGTTG)n Simple_repeat Simple_repeat 2 32 0 2 637 22 0 0 0 chr3L 6911568 6911590 -17631967 + AT_rich Low_complexity Low_complexity 1 22 0 2 637 24 0 0 0 chr3L 6912291 6912315 -17631242 + AT_rich Low_complexity Low_complexity 1 24 0 2 637 28 48 0 0 chr3L 6914110 6914152 -17629405 + AT_rich Low_complexity Low_complexity 1 42 0 2 637 26 111 0 0 chr3L 6915497 6915614 -17627943 + AT_rich Low_complexity Low_complexity 1 117 0 2 637 180 125 0 0 chr3L 6918253 6918285 -17625272 + (TA)n Simple_repeat Simple_repeat 1 32 0 2 637 182 91 30 0 chr3L 6919046 6919079 -17624478 + (CA)n Simple_repeat Simple_repeat 1 34 0 2 637 24 32 0 0 chr3L 6920837 6920868 -17622689 + AT_rich Low_complexity Low_complexity 1 31 0 2 637 201 39 0 0 chr3L 6921543 6921569 -17621988 + (CAACT)n Simple_repeat Simple_repeat 1 26 0 2 637 222 37 0 0 chr3L 6922877 6922904 -17620653 + (CAT)n Simple_repeat Simple_repeat 1 27 0 2 637 207 0 0 0 chr3L 6925926 6925949 -17617608 + (A)n Simple_repeat Simple_repeat 1 23 0 2 637 224 161 16 16 chr3L 6927477 6927499 -17616058 + (TTA)n Simple_repeat Simple_repeat 3 25 0 2 637 298 0 48 0 chr3L 6927499 6927541 -17616016 + (TA)n Simple_repeat Simple_repeat 1 44 0 2 637 224 161 16 16 chr3L 6927541 6927581 -17615976 + (TTA)n Simple_repeat Simple_repeat 3 41 0 2 637 30 0 0 0 chr3L 6927924 6927954 -17615603 + AT_rich Low_complexity Low_complexity 1 30 0 2 637 240 100 0 0 chr3L 6930114 6930154 -17613403 + (CAACG)n Simple_repeat Simple_repeat 3 42 0 2 637 39 0 0 0 chr3L 6931939 6931978 -17611579 + AT_rich Low_complexity Low_complexity 1 39 0 2 637 24 67 0 0 chr3L 6933163 6933208 -17610349 + AT_rich Low_complexity Low_complexity 1 45 0 2 637 21 0 0 0 chr3L 6934362 6934383 -17609174 + AT_rich Low_complexity Low_complexity 1 21 0 2 637 22 35 0 0 chr3L 6934845 6934874 -17608683 + AT_rich Low_complexity Low_complexity 1 29 0 2 637 21 0 0 0 chr3L 6935317 6935338 -17608219 + AT_rich Low_complexity Low_complexity 1 21 0 2 637 201 94 0 0 chr3L 6936668 6936700 -17606857 + (TC)n Simple_repeat Simple_repeat 2 33 0 2 637 200 224 0 17 chr3L 6937669 6937728 -17605829 + A-rich Low_complexity Low_complexity 3 60 0 2 637 186 208 0 0 chr3L 6938313 6938361 -17605196 + (TG)n Simple_repeat Simple_repeat 1 48 0 2 637 25 0 0 0 chr3L 6939100 6939125 -17604432 + AT_rich Low_complexity Low_complexity 1 25 0 2 637 26 64 0 0 chr3L 6939836 6939883 -17603674 + AT_rich Low_complexity Low_complexity 1 47 0 2 637 231 244 0 103 chr3L 6940677 6940764 -17602793 + TART_B1 LINE telomeric 152 229 -10425 2 637 382 189 0 54 chr3L 6940812 6940924 -17602633 + ROO_I LTR Pao 641 746 -7510 2 637 180 184 0 0 chr3L 6941762 6941811 -17601746 + A-rich Low_complexity Low_complexity 1 49 0 2 637 25 0 0 0 chr3L 6942431 6942456 -17601101 + AT_rich Low_complexity Low_complexity 1 25 0 2 637 204 97 0 0 chr3L 6942476 6942507 -17601050 + (TA)n Simple_repeat Simple_repeat 2 32 0 2 637 225 0 0 0 chr3L 6943129 6943154 -17600403 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2 637 186 43 0 0 chr3L 6943631 6943654 -17599903 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2 637 195 42 0 0 chr3L 6943972 6943996 -17599561 + (CTG)n Simple_repeat Simple_repeat 1 24 0 2 637 24 0 0 0 chr3L 6944879 6944903 -17598654 + AT_rich Low_complexity Low_complexity 1 24 0 2 637 24 67 0 0 chr3L 6946339 6946384 -17597173 + AT_rich Low_complexity Low_complexity 1 45 0 2 638 22 0 0 0 chr3L 6948724 6948746 -17594811 + AT_rich Low_complexity Low_complexity 1 22 0 2 638 23 33 0 0 chr3L 6948757 6948787 -17594770 + AT_rich Low_complexity Low_complexity 1 30 0 2 638 22 0 0 0 chr3L 6949138 6949160 -17594397 + AT_rich Low_complexity Low_complexity 1 22 0 2 638 23 33 0 0 chr3L 6950952 6950982 -17592575 + AT_rich Low_complexity Low_complexity 1 30 0 2 638 22 0 0 0 chr3L 6952651 6952673 -17590884 + AT_rich Low_complexity Low_complexity 1 22 0 2 638 201 39 0 0 chr3L 6957397 6957423 -17586134 + (TC)n Simple_repeat Simple_repeat 2 27 0 2 638 30 27 0 0 chr3L 6961140 6961177 -17582380 + AT_rich Low_complexity Low_complexity 1 37 0 2 638 24 32 0 0 chr3L 6962050 6962081 -17581476 + AT_rich Low_complexity Low_complexity 1 31 0 2 638 22 0 0 0 chr3L 6962575 6962597 -17580960 + AT_rich Low_complexity Low_complexity 1 22 0 2 638 21 0 0 0 chr3L 6968017 6968038 -17575519 + AT_rich Low_complexity Low_complexity 1 21 0 2 638 24 53 0 0 chr3L 6968855 6968893 -17574664 + AT_rich Low_complexity Low_complexity 1 38 0 2 638 219 88 0 0 chr3L 6970230 6970264 -17573293 + (T)n Simple_repeat Simple_repeat 1 34 0 2 638 23 33 0 0 chr3L 6970625 6970655 -17572902 + AT_rich Low_complexity Low_complexity 1 30 0 2 638 267 79 0 0 chr3L 6971770 6971808 -17571749 + (TATG)n Simple_repeat Simple_repeat 2 39 0 2 638 250 156 15 15 chr3L 6972897 6972962 -17570595 + (CA)n Simple_repeat Simple_repeat 1 65 0 2 638 27 62 0 0 chr3L 6973883 6973931 -17569626 + AT_rich Low_complexity Low_complexity 1 48 0 2 638 24 77 0 0 chr3L 6973955 6974007 -17569550 + AT_rich Low_complexity Low_complexity 1 52 0 2 638 21 36 0 0 chr3L 6975154 6975182 -17568375 + AT_rich Low_complexity Low_complexity 1 28 0 2 638 315 49 0 0 chr3L 6979087 6979128 -17564429 + (TC)n Simple_repeat Simple_repeat 2 42 0 2 638 180 0 0 0 chr3L 6979387 6979407 -17564150 + (CA)n Simple_repeat Simple_repeat 1 20 0 2 638 22 70 0 0 chr3L 6979585 6979628 -17563929 + AT_rich Low_complexity Low_complexity 1 43 0 2 638 22 0 0 0 chr3L 6981297 6981319 -17562238 + AT_rich Low_complexity Low_complexity 1 22 0 2 638 189 121 0 0 chr3L 6981628 6981661 -17561896 + (A)n Simple_repeat Simple_repeat 1 33 0 2 638 183 100 0 0 chr3L 6981905 6981935 -17561622 + (A)n Simple_repeat Simple_repeat 1 30 0 2 638 23 0 0 0 chr3L 6982463 6982486 -17561071 + AT_rich Low_complexity Low_complexity 1 23 0 2 638 27 81 0 0 chr3L 6983256 6983318 -17560239 + AT_rich Low_complexity Low_complexity 1 62 0 2 638 24 67 0 0 chr3L 6983844 6983889 -17559668 + AT_rich Low_complexity Low_complexity 1 45 0 2 638 28 0 0 0 chr3L 6985562 6985590 -17557967 + AT_rich Low_complexity Low_complexity 1 28 0 2 638 5026 18 0 0 chr3L 6988039 6988595 -17554962 - BS LINE Jockey -3 5123 4568 2 638 237 139 0 0 chr3L 6990758 6990801 -17552756 + (TC)n Simple_repeat Simple_repeat 1 43 0 2 638 22 0 0 0 chr3L 6997670 6997692 -17545865 + AT_rich Low_complexity Low_complexity 1 22 0 2 638 24 53 0 0 chr3L 7000597 7000635 -17542922 + AT_rich Low_complexity Low_complexity 1 38 0 2 638 219 69 0 0 chr3L 7002508 7002537 -17541020 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 638 26 0 0 0 chr3L 7002707 7002733 -17540824 + AT_rich Low_complexity Low_complexity 1 26 0 2 638 23 0 0 0 chr3L 7002827 7002850 -17540707 + AT_rich Low_complexity Low_complexity 1 23 0 2 638 210 271 0 12 chr3L 7007285 7007371 -17536186 + (TCG)n Simple_repeat Simple_repeat 3 87 0 2 638 195 100 0 0 chr3L 7007390 7007420 -17536137 + (CTA)n Simple_repeat Simple_repeat 2 31 0 2 638 21 0 0 0 chr3L 7008858 7008879 -17534678 + AT_rich Low_complexity Low_complexity 1 21 0 2 638 221 211 0 19 chr3L 7010217 7010270 -17533287 + (TA)n Simple_repeat Simple_repeat 2 53 0 2 638 250 239 0 15 chr3L 7011371 7011439 -17532118 + (TG)n Simple_repeat Simple_repeat 2 68 0 2 638 205 29 59 0 chr3L 7013389 7013423 -17530134 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 638 208 121 0 0 chr3L 7017258 7017291 -17526266 + (CCGAA)n Simple_repeat Simple_repeat 3 35 0 2 638 23 0 0 0 chr3L 7019537 7019560 -17523997 + AT_rich Low_complexity Low_complexity 1 23 0 2 638 197 65 32 0 chr3L 7020545 7020576 -17522981 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2 638 212 245 0 0 chr3L 7020712 7020761 -17522796 + (TATG)n Simple_repeat Simple_repeat 1 49 0 2 638 21 36 0 0 chr3L 7021332 7021360 -17522197 + AT_rich Low_complexity Low_complexity 1 28 0 2 638 235 288 12 0 chr3L 7022563 7022643 -17520914 + (ATG)n Simple_repeat Simple_repeat 3 83 0 2 638 31 68 0 0 chr3L 7022952 7023011 -17520546 + AT_rich Low_complexity Low_complexity 1 59 0 2 638 49 43 0 0 chr3L 7025915 7025985 -17517572 + AT_rich Low_complexity Low_complexity 1 70 0 2 638 25 0 0 0 chr3L 7027576 7027601 -17515956 + AT_rich Low_complexity Low_complexity 1 25 0 2 638 198 0 0 0 chr3L 7029993 7030015 -17513542 + (TG)n Simple_repeat Simple_repeat 1 22 0 2 638 33 73 0 0 chr3L 7036982 7037050 -17506507 + AT_rich Low_complexity Low_complexity 1 68 0 2 638 24 0 0 0 chr3L 7041218 7041242 -17502315 + AT_rich Low_complexity Low_complexity 1 24 0 2 638 21 36 0 0 chr3L 7044548 7044576 -17498981 + AT_rich Low_complexity Low_complexity 1 28 0 2 638 213 139 0 0 chr3L 7045631 7045674 -17497883 + (A)n Simple_repeat Simple_repeat 1 43 0 2 638 189 74 0 0 chr3L 7046502 7046529 -17497028 + (GAGAA)n Simple_repeat Simple_repeat 3 29 0 2 638 213 205 0 0 chr3L 7047918 7047957 -17495600 + (TTCTG)n Simple_repeat Simple_repeat 2 40 0 2 638 221 220 17 17 chr3L 7049571 7049631 -17493926 + (TTTG)n Simple_repeat Simple_repeat 2 61 0 2 638 30 0 0 0 chr3L 7050211 7050241 -17493316 + AT_rich Low_complexity Low_complexity 1 30 0 2 638 22 56 0 0 chr3L 7051800 7051836 -17491721 + AT_rich Low_complexity Low_complexity 1 36 0 2 638 21 95 0 0 chr3L 7052014 7052077 -17491480 + AT_rich Low_complexity Low_complexity 1 63 0 2 638 29 47 0 0 chr3L 7064393 7064436 -17479121 + AT_rich Low_complexity Low_complexity 1 43 0 2 638 231 193 0 34 chr3L 7066248 7066307 -17477250 + (CATATA)n Simple_repeat Simple_repeat 4 60 0 2 638 202 264 21 42 chr3L 7066490 7066585 -17476972 + T-rich Low_complexity Low_complexity 1 93 0 2 638 267 93 0 0 chr3L 7069254 7069297 -17474260 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 638 21 0 0 0 chr3L 7074771 7074792 -17468765 + AT_rich Low_complexity Low_complexity 1 21 0 2 638 23 0 0 0 chr3L 7077037 7077060 -17466497 + AT_rich Low_complexity Low_complexity 1 23 0 2 639 23 54 0 0 chr3L 7078568 7078605 -17464952 + AT_rich Low_complexity Low_complexity 1 37 0 2 639 276 53 0 0 chr3L 7080987 7081025 -17462532 + (TG)n Simple_repeat Simple_repeat 2 39 0 2 639 23 33 0 0 chr3L 7082717 7082747 -17460810 + AT_rich Low_complexity Low_complexity 1 30 0 2 639 180 77 0 0 chr3L 7084923 7084949 -17458608 + (GTCTG)n Simple_repeat Simple_repeat 5 30 0 2 639 22 70 0 0 chr3L 7085206 7085249 -17458308 + AT_rich Low_complexity Low_complexity 1 43 0 2 639 21 36 0 0 chr3L 7085279 7085307 -17458250 + AT_rich Low_complexity Low_complexity 1 28 0 2 639 33 25 0 0 chr3L 7089057 7089097 -17454460 + AT_rich Low_complexity Low_complexity 1 40 0 2 639 186 71 0 0 chr3L 7091112 7091140 -17452417 + (A)n Simple_repeat Simple_repeat 1 28 0 2 639 22 35 0 0 chr3L 7097323 7097352 -17446205 + AT_rich Low_complexity Low_complexity 1 29 0 2 639 22 0 0 0 chr3L 7100208 7100230 -17443327 + AT_rich Low_complexity Low_complexity 1 22 0 2 639 21 57 0 0 chr3L 7101655 7101690 -17441867 + AT_rich Low_complexity Low_complexity 1 35 0 2 639 213 159 68 0 chr3L 7105117 7105161 -17438396 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 2 639 255 259 0 0 chr3L 7107064 7107122 -17436435 + (ACCG)n Simple_repeat Simple_repeat 2 59 0 2 639 31 26 0 0 chr3L 7107873 7107911 -17435646 + AT_rich Low_complexity Low_complexity 1 38 0 2 639 235 261 0 64 chr3L 7111623 7111717 -17431840 + (CCA)n Simple_repeat Simple_repeat 2 89 0 2 639 183 42 0 0 chr3L 7113879 7113903 -17429654 + (TCTA)n Simple_repeat Simple_repeat 3 26 0 2 639 210 37 0 0 chr3L 7116397 7116424 -17427133 + (A)n Simple_repeat Simple_repeat 1 27 0 2 639 35 24 0 0 chr3L 7122844 7122886 -17420671 + AT_rich Low_complexity Low_complexity 1 42 0 2 639 186 71 0 0 chr3L 7123110 7123138 -17420419 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 2 639 842 0 0 0 chr3L 7123138 7123236 -17420321 - BS LINE Jockey -28 5098 5001 2 639 189 0 0 0 chr3L 7123526 7123547 -17420010 + (CTTTA)n Simple_repeat Simple_repeat 3 23 0 2 639 212 269 0 0 chr3L 7127686 7127738 -17415819 + (TG)n Simple_repeat Simple_repeat 2 53 0 2 639 214 280 27 0 chr3L 7128061 7128136 -17415421 + (CAA)n Simple_repeat Simple_repeat 2 78 0 2 639 284 102 0 20 chr3L 7130837 7130887 -17412670 + (CTG)n Simple_repeat Simple_repeat 2 50 0 2 639 186 209 0 0 chr3L 7131017 7131060 -17412497 + (TCCG)n Simple_repeat Simple_repeat 3 45 0 2 639 206 140 39 20 chr3L 7135959 7136010 -17407547 + (TA)n Simple_repeat Simple_repeat 1 52 0 2 639 276 30 0 0 chr3L 7142657 7142690 -17400867 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 639 26 0 0 0 chr3L 7143088 7143114 -17400443 + AT_rich Low_complexity Low_complexity 1 26 0 2 639 183 100 0 0 chr3L 7145023 7145053 -17398504 + (A)n Simple_repeat Simple_repeat 1 30 0 2 639 238 211 0 0 chr3L 7145432 7145484 -17398073 + T-rich Low_complexity Low_complexity 1 52 0 2 639 235 241 0 0 chr3L 7149103 7149157 -17394400 + (TTTG)n Simple_repeat Simple_repeat 3 56 0 2 639 24 53 0 0 chr3L 7150402 7150440 -17393117 + AT_rich Low_complexity Low_complexity 1 38 0 2 639 209 200 0 0 chr3L 7151965 7152015 -17391542 + A-rich Low_complexity Low_complexity 1 50 0 2 639 25 31 0 0 chr3L 7152270 7152302 -17391255 + AT_rich Low_complexity Low_complexity 1 32 0 2 639 189 154 0 0 chr3L 7154517 7154556 -17389001 + (TTG)n Simple_repeat Simple_repeat 3 41 0 2 639 564 111 0 0 chr3L 7154603 7154702 -17388855 + (CTG)n Simple_repeat Simple_repeat 1 99 0 2 639 207 0 0 0 chr3L 7155603 7155626 -17387931 + (CTG)n Simple_repeat Simple_repeat 1 23 0 2 639 216 265 12 0 chr3L 7156058 7156141 -17387416 + (TTG)n Simple_repeat Simple_repeat 3 86 0 2 639 191 36 0 35 chr3L 7157402 7157431 -17386126 + (TGG)n Simple_repeat Simple_repeat 1 28 0 2 639 192 40 0 0 chr3L 7161692 7161717 -17381840 + (T)n Simple_repeat Simple_repeat 1 25 0 2 639 21 36 0 0 chr3L 7162294 7162322 -17381235 + AT_rich Low_complexity Low_complexity 1 28 0 2 639 28 0 0 0 chr3L 7162581 7162609 -17380948 + AT_rich Low_complexity Low_complexity 1 28 0 2 639 21 0 0 0 chr3L 7163272 7163293 -17380264 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 22 35 0 0 chr3L 7165294 7165323 -17378234 + AT_rich Low_complexity Low_complexity 1 29 0 2 639 210 204 20 0 chr3L 7166894 7166943 -17376614 + (TA)n Simple_repeat Simple_repeat 2 51 0 2 639 186 43 0 0 chr3L 7168870 7168893 -17374664 + (CA)n Simple_repeat Simple_repeat 1 23 0 2 639 234 116 0 0 chr3L 7170919 7170962 -17372595 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 639 183 167 0 0 chr3L 7172549 7172591 -17370966 + A-rich Low_complexity Low_complexity 1 42 0 2 639 25 31 0 0 chr3L 7173917 7173949 -17369608 + AT_rich Low_complexity Low_complexity 1 32 0 2 639 21 0 0 0 chr3L 7175926 7175947 -17367610 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 201 74 0 0 chr3L 7176394 7176421 -17367136 + (AGCTG)n Simple_repeat Simple_repeat 2 28 0 2 639 32 0 0 0 chr3L 7176654 7176686 -17366871 + AT_rich Low_complexity Low_complexity 1 32 0 2 639 255 133 0 0 chr3L 7177707 7177752 -17365805 + (TA)n Simple_repeat Simple_repeat 2 46 0 2 639 272 301 0 0 chr3L 7177964 7178057 -17365500 + T-rich Low_complexity Low_complexity 1 93 0 2 639 29 47 0 0 chr3L 7179000 7179043 -17364514 + AT_rich Low_complexity Low_complexity 1 43 0 2 639 24 32 0 0 chr3L 7179649 7179680 -17363877 + AT_rich Low_complexity Low_complexity 1 31 0 2 639 40 0 0 0 chr3L 7181214 7181254 -17362303 + AT_rich Low_complexity Low_complexity 1 40 0 2 639 41 36 0 0 chr3L 7181562 7181617 -17361940 + AT_rich Low_complexity Low_complexity 1 55 0 2 639 189 0 0 0 chr3L 7184202 7184223 -17359334 + (TG)n Simple_repeat Simple_repeat 1 21 0 2 639 243 280 0 0 chr3L 7184245 7184320 -17359237 + (ATGGTG)n Simple_repeat Simple_repeat 1 75 0 2 639 299 302 0 0 chr3L 7184681 7184767 -17358790 + (ACTG)n Simple_repeat Simple_repeat 1 86 0 2 639 195 186 0 0 chr3L 7186144 7186187 -17357370 + (TA)n Simple_repeat Simple_repeat 1 43 0 2 639 23 0 0 0 chr3L 7186614 7186637 -17356920 + AT_rich Low_complexity Low_complexity 1 23 0 2 639 21 0 0 0 chr3L 7188305 7188326 -17355231 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 216 111 0 0 chr3L 7189427 7189463 -17354094 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 639 21 0 0 0 chr3L 7189605 7189626 -17353931 + AT_rich Low_complexity Low_complexity 1 21 0 2 639 226 288 0 0 chr3L 7193058 7193138 -17350419 + T-rich Low_complexity Low_complexity 1 80 0 2 639 210 194 0 0 chr3L 7194514 7194576 -17348981 + (TG)n Simple_repeat Simple_repeat 1 62 0 2 639 24 0 0 0 chr3L 7196123 7196147 -17347410 + AT_rich Low_complexity Low_complexity 1 24 0 2 639 26 0 0 0 chr3L 7196807 7196833 -17346724 + AT_rich Low_complexity Low_complexity 1 26 0 2 639 264 137 0 0 chr3L 7197120 7197171 -17346386 + (TC)n Simple_repeat Simple_repeat 2 52 0 2 639 195 139 0 0 chr3L 7197349 7197385 -17346172 + (CA)n Simple_repeat Simple_repeat 1 36 0 2 639 231 214 0 0 chr3L 7198503 7198545 -17345012 + (CAA)n Simple_repeat Simple_repeat 1 42 0 2 639 225 312 0 15 chr3L 7201035 7201100 -17342457 + (TG)n Simple_repeat Simple_repeat 1 64 0 2 639 29 0 0 0 chr3L 7201213 7201242 -17342315 + AT_rich Low_complexity Low_complexity 1 29 0 2 639 218 197 0 43 chr3L 7205478 7205547 -17338010 + T-rich Low_complexity Low_complexity 4 69 0 2 639 23 0 0 0 chr3L 7205922 7205945 -17337612 + AT_rich Low_complexity Low_complexity 1 23 0 2 639 216 111 0 0 chr3L 7206189 7206225 -17337332 + (CAATG)n Simple_repeat Simple_repeat 5 40 0 2 639 207 69 0 0 chr3L 7207231 7207260 -17336297 + (CA)n Simple_repeat Simple_repeat 2 30 0 2 640 180 111 0 0 chr3L 7209526 7209553 -17334004 + (CAG)n Simple_repeat Simple_repeat 3 29 0 2 640 248 167 0 0 chr3L 7212081 7212129 -17331428 + ROO_I LTR Pao 679 726 -7530 2 640 219 69 0 0 chr3L 7213385 7213414 -17330143 + (TATG)n Simple_repeat Simple_repeat 2 30 0 2 640 207 114 0 0 chr3L 7214899 7214934 -17328623 + (A)n Simple_repeat Simple_repeat 1 35 0 2 640 221 291 0 0 chr3L 7215819 7215874 -17327683 + (TA)n Simple_repeat Simple_repeat 2 56 0 2 640 202 171 49 0 chr3L 7217850 7217891 -17325666 + (CTTTG)n Simple_repeat Simple_repeat 2 44 0 2 640 264 154 0 0 chr3L 7218484 7218536 -17325021 + CT-rich Low_complexity Low_complexity 2 53 0 2 640 195 69 0 0 chr3L 7219921 7219950 -17323607 + (CCAA)n Simple_repeat Simple_repeat 4 32 0 2 640 252 182 0 35 chr3L 7222634 7222691 -17320866 + (CAG)n Simple_repeat Simple_repeat 3 57 0 2 640 216 233 22 11 chr3L 7223862 7223953 -17319604 + (TA)n Simple_repeat Simple_repeat 2 93 0 2 640 240 35 0 0 chr3L 7224263 7224292 -17319265 + (TA)n Simple_repeat Simple_repeat 1 29 0 2 640 23 0 0 0 chr3L 7225211 7225234 -17318323 + AT_rich Low_complexity Low_complexity 1 23 0 2 640 23 68 0 0 chr3L 7227620 7227664 -17315893 + AT_rich Low_complexity Low_complexity 1 44 0 2 640 23 33 0 0 chr3L 7228990 7229020 -17314537 + AT_rich Low_complexity Low_complexity 1 30 0 2 640 30 45 0 0 chr3L 7229069 7229113 -17314444 + AT_rich Low_complexity Low_complexity 1 44 0 2 640 28 0 0 0 chr3L 7229729 7229757 -17313800 + AT_rich Low_complexity Low_complexity 1 28 0 2 640 22 0 0 0 chr3L 7237253 7237275 -17306282 + AT_rich Low_complexity Low_complexity 1 22 0 2 640 25 0 0 0 chr3L 7246641 7246666 -17296891 + AT_rich Low_complexity Low_complexity 1 25 0 2 640 246 128 0 0 chr3L 7249209 7249248 -17294309 + (TA)n Simple_repeat Simple_repeat 2 40 0 2 640 210 118 0 0 chr3L 7252545 7252579 -17290978 + (GATTG)n Simple_repeat Simple_repeat 3 36 0 2 640 22 0 0 0 chr3L 7253600 7253622 -17289935 + AT_rich Low_complexity Low_complexity 1 22 0 2 640 183 139 0 0 chr3L 7256671 7256707 -17286850 + (CA)n Simple_repeat Simple_repeat 2 37 0 2 640 24 77 0 0 chr3L 7257419 7257471 -17286086 + AT_rich Low_complexity Low_complexity 1 52 0 2 640 44 46 0 0 chr3L 7258072 7258137 -17285420 + AT_rich Low_complexity Low_complexity 1 65 0 2 640 180 152 0 0 chr3L 7259962 7259995 -17283562 + (TA)n Simple_repeat Simple_repeat 1 33 0 2 640 180 125 0 0 chr3L 7260235 7260267 -17283290 + (TTTAA)n Simple_repeat Simple_repeat 2 33 0 2 640 213 39 0 0 chr3L 7260948 7260974 -17282583 + (TTTAG)n Simple_repeat Simple_repeat 3 28 0 2 640 22 35 0 0 chr3L 7266152 7266181 -17277376 + AT_rich Low_complexity Low_complexity 1 29 0 2 640 202 189 0 0 chr3L 7267683 7267720 -17275837 + (CGG)n Simple_repeat Simple_repeat 3 39 0 2 640 189 175 0 0 chr3L 7268731 7268771 -17274786 + (CGAAT)n Simple_repeat Simple_repeat 3 42 0 2 640 231 133 0 0 chr3L 7269058 7269103 -17274454 + (ATGGTG)n Simple_repeat Simple_repeat 4 48 0 2 640 189 154 0 0 chr3L 7269831 7269870 -17273687 + (CA)n Simple_repeat Simple_repeat 1 39 0 2 640 27 29 0 0 chr3L 7270322 7270356 -17273201 + AT_rich Low_complexity Low_complexity 1 34 0 2 640 21 0 0 0 chr3L 7270722 7270743 -17272814 + AT_rich Low_complexity Low_complexity 1 21 0 2 640 201 132 0 0 chr3L 7273326 7273364 -17270193 + (TA)n Simple_repeat Simple_repeat 2 39 0 2 640 21 0 0 0 chr3L 7277176 7277197 -17266360 + AT_rich Low_complexity Low_complexity 1 21 0 2 640 30 27 0 0 chr3L 7277653 7277690 -17265867 + AT_rich Low_complexity Low_complexity 1 37 0 2 640 281 170 0 174 chr3L 7277867 7277988 -17265569 - ROO_I LTR Pao -7517 739 640 2 640 22 0 0 0 chr3L 7278549 7278571 -17264986 + AT_rich Low_complexity Low_complexity 1 22 0 2 640 220 209 0 0 chr3L 7282430 7282473 -17261084 + (CAT)n Simple_repeat Simple_repeat 3 45 0 2 640 209 119 24 0 chr3L 7283680 7283722 -17259835 + (TG)n Simple_repeat Simple_repeat 2 44 0 2 640 225 0 0 0 chr3L 7287934 7287959 -17255598 + (AGTTG)n Simple_repeat Simple_repeat 1 25 0 2 640 204 190 0 65 chr3L 7289960 7290022 -17253535 + A-rich Low_complexity Low_complexity 2 59 0 2 640 27 29 0 0 chr3L 7290737 7290771 -17252786 + AT_rich Low_complexity Low_complexity 1 34 0 2 640 195 42 0 0 chr3L 7292046 7292070 -17251487 + (CA)n Simple_repeat Simple_repeat 2 25 0 2 640 208 121 0 0 chr3L 7292846 7292879 -17250678 + (CA)n Simple_repeat Simple_repeat 1 33 0 2 640 180 77 0 0 chr3L 7293322 7293348 -17250209 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 640 224 238 16 0 chr3L 7294701 7294764 -17248793 + (TTTG)n Simple_repeat Simple_repeat 3 66 0 2 640 272 91 23 0 chr3L 7298134 7298178 -17245379 + (ACTG)n Simple_repeat Simple_repeat 4 48 0 2 640 23 33 0 0 chr3L 7298953 7298983 -17244574 + AT_rich Low_complexity Low_complexity 1 30 0 2 640 207 0 0 0 chr3L 7299471 7299494 -17244063 + (A)n Simple_repeat Simple_repeat 1 23 0 2 640 209 217 0 0 chr3L 7303614 7303660 -17239897 + A-rich Low_complexity Low_complexity 1 46 0 2 640 192 77 0 0 chr3L 7304118 7304144 -17239413 + (TG)n Simple_repeat Simple_repeat 1 26 0 2 640 21 0 0 0 chr3L 7305506 7305527 -17238030 + AT_rich Low_complexity Low_complexity 1 21 0 2 640 27 62 0 0 chr3L 7306582 7306630 -17236927 + AT_rich Low_complexity Low_complexity 1 48 0 2 640 210 136 0 0 chr3L 7306905 7306949 -17236608 + (CA)n Simple_repeat Simple_repeat 1 44 0 2 640 27 0 0 0 chr3L 7312862 7312889 -17230668 + AT_rich Low_complexity Low_complexity 1 27 0 2 640 198 0 0 0 chr3L 7314823 7314845 -17228712 + (GGA)n Simple_repeat Simple_repeat 2 23 0 2 640 24 53 0 0 chr3L 7316644 7316682 -17226875 + AT_rich Low_complexity Low_complexity 1 38 0 2 640 32 26 0 0 chr3L 7322087 7322126 -17221431 + AT_rich Low_complexity Low_complexity 1 39 0 2 640 21 82 0 0 chr3L 7328439 7328488 -17215069 + AT_rich Low_complexity Low_complexity 1 49 0 2 640 202 182 0 0 chr3L 7331616 7331649 -17211908 + (CTG)n Simple_repeat Simple_repeat 2 34 0 2 640 21 0 0 0 chr3L 7333032 7333053 -17210504 + AT_rich Low_complexity Low_complexity 1 21 0 2 640 183 42 0 0 chr3L 7333056 7333080 -17210477 + (CCG)n Simple_repeat Simple_repeat 3 26 0 2 640 195 42 0 0 chr3L 7337694 7337718 -17205839 + (T)n Simple_repeat Simple_repeat 1 24 0 2 641 212 184 0 0 chr3L 7341672 7341710 -17201847 + (CAA)n Simple_repeat Simple_repeat 2 39 0 2 641 188 86 29 0 chr3L 7346396 7346431 -17197126 + (TA)n Simple_repeat Simple_repeat 2 37 0 2 641 204 111 0 0 chr3L 7349309 7349345 -17194212 + (TCC)n Simple_repeat Simple_repeat 1 36 0 2 641 280 133 0 22 chr3L 7349955 7350001 -17193556 - QUASIMODO_LTR LTR Gypsy -390 268 224 2 641 1951 76 40 27 chr3L 7349982 7350279 -17193278 - QUASIMODO_LTR LTR Gypsy -293 365 65 2 641 23 0 0 0 chr3L 7353420 7353443 -17190114 + AT_rich Low_complexity Low_complexity 1 23 0 2 641 189 0 0 0 chr3L 7353443 7353464 -17190093 + (TA)n Simple_repeat Simple_repeat 1 21 0 2 641 189 107 0 0 chr3L 7357155 7357183 -17186374 + (CGGA)n Simple_repeat Simple_repeat 3 30 0 2 641 215 237 17 0 chr3L 7358240 7358299 -17185258 + (TG)n Simple_repeat Simple_repeat 1 60 0 2 641 180 152 0 0 chr3L 7361566 7361599 -17181958 + (CA)n Simple_repeat Simple_repeat 2 34 0 2 641 27 0 0 0 chr3L 7362537 7362564 -17180993 + AT_rich Low_complexity Low_complexity 1 27 0 2 641 21 0 0 0 chr3L 7362696 7362717 -17180840 + AT_rich Low_complexity Low_complexity 1 21 0 3 641 318 162 9 87 chr3L 7365785 7365900 -17177657 + A-rich Low_complexity Low_complexity 1 106 0 3 641 194 0 0 37 chr3L 7366713 7366740 -17176817 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 641 3605 5 7 7 chr3L 7370470 7370884 -17172673 + DM297_LTR LTR Gypsy 1 414 0 3 641 6988 8 1 2 chr3L 7370884 7371685 -17171872 + DM297_I LTR Gypsy 1 800 -5367 3 641 12421 6 0 1 chr3L 7371680 7373104 -17170453 + DM297_I LTR Gypsy 4745 6167 0 3 641 3605 5 7 7 chr3L 7373104 7373518 -17170039 + DM297_LTR LTR Gypsy 1 414 0 3 641 21 0 0 0 chr3L 7374808 7374829 -17168728 + AT_rich Low_complexity Low_complexity 1 21 0 3 641 24 32 0 0 chr3L 7381394 7381425 -17162132 + AT_rich Low_complexity Low_complexity 1 31 0 3 641 21 0 0 0 chr3L 7381546 7381567 -17161990 + AT_rich Low_complexity Low_complexity 1 21 0 3 641 26 30 0 0 chr3L 7383849 7383882 -17159675 + AT_rich Low_complexity Low_complexity 1 33 0 3 641 246 233 14 0 chr3L 7384333 7384406 -17159151 + (CAAA)n Simple_repeat Simple_repeat 1 74 0 3 641 21 36 0 0 chr3L 7384495 7384523 -17159034 + AT_rich Low_complexity Low_complexity 1 28 0 3 641 26 0 0 0 chr3L 7384643 7384669 -17158888 + AT_rich Low_complexity Low_complexity 1 26 0 3 641 22 0 0 0 chr3L 7385058 7385080 -17158477 + AT_rich Low_complexity Low_complexity 1 22 0 3 641 29 0 0 0 chr3L 7386626 7386655 -17156902 + AT_rich Low_complexity Low_complexity 1 29 0 3 641 22 35 0 0 chr3L 7387471 7387500 -17156057 + AT_rich Low_complexity Low_complexity 1 29 0 3 641 21 0 0 0 chr3L 7387803 7387824 -17155733 + AT_rich Low_complexity Low_complexity 1 21 0 3 641 23 86 0 0 chr3L 7388447 7388505 -17155052 + AT_rich Low_complexity Low_complexity 1 58 0 3 641 23 0 0 0 chr3L 7388563 7388586 -17154971 + AT_rich Low_complexity Low_complexity 1 23 0 3 641 24 53 0 0 chr3L 7390864 7390902 -17152655 + AT_rich Low_complexity Low_complexity 1 38 0 3 641 21 36 0 0 chr3L 7392818 7392846 -17150711 + AT_rich Low_complexity Low_complexity 1 28 0 3 641 29 28 0 0 chr3L 7393275 7393311 -17150246 + AT_rich Low_complexity Low_complexity 1 36 0 3 641 31 26 0 0 chr3L 7394244 7394282 -17149275 + AT_rich Low_complexity Low_complexity 1 38 0 3 641 24 53 0 0 chr3L 7395049 7395087 -17148470 + AT_rich Low_complexity Low_complexity 1 38 0 3 641 224 87 0 61 chr3L 7397752 7397801 -17145756 + (CAAAAA)n Simple_repeat Simple_repeat 6 51 0 3 641 28 0 0 0 chr3L 7400950 7400978 -17142579 + AT_rich Low_complexity Low_complexity 1 28 0 3 641 27 49 0 0 chr3L 7401128 7401169 -17142388 + AT_rich Low_complexity Low_complexity 1 41 0 3 641 249 33 0 0 chr3L 7401234 7401264 -17142293 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 641 24 53 0 0 chr3L 7401672 7401710 -17141847 + AT_rich Low_complexity Low_complexity 1 38 0 3 641 30 69 0 0 chr3L 7404205 7404263 -17139294 + AT_rich Low_complexity Low_complexity 1 58 0 3 641 23 0 0 0 chr3L 7405079 7405102 -17138455 + AT_rich Low_complexity Low_complexity 1 23 0 3 641 180 0 0 0 chr3L 7405941 7405961 -17137596 + (G)n Simple_repeat Simple_repeat 1 20 0 3 641 201 94 0 0 chr3L 7408109 7408141 -17135416 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 641 191 103 26 0 chr3L 7408939 7408978 -17134579 + (TTTTTG)n Simple_repeat Simple_repeat 5 44 0 3 641 26 0 0 0 chr3L 7410155 7410181 -17133376 + AT_rich Low_complexity Low_complexity 1 26 0 3 641 28 29 0 0 chr3L 7414896 7414931 -17128626 + AT_rich Low_complexity Low_complexity 1 35 0 3 641 255 114 0 0 chr3L 7418078 7418122 -17125435 + (A)n Simple_repeat Simple_repeat 1 44 0 3 641 22 80 0 0 chr3L 7420288 7420338 -17123219 + AT_rich Low_complexity Low_complexity 1 50 0 3 641 180 0 0 0 chr3L 7425420 7425440 -17118117 + (TATG)n Simple_repeat Simple_repeat 1 20 0 3 641 194 62 31 0 chr3L 7426858 7426890 -17116667 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 641 219 183 32 48 chr3L 7426951 7427014 -17116543 + T-rich Low_complexity Low_complexity 3 64 0 3 641 204 182 0 0 chr3L 7430943 7430987 -17112570 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 641 405 123 0 0 chr3L 7431151 7431216 -17112341 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 641 29 28 0 0 chr3L 7431524 7431560 -17111997 + AT_rich Low_complexity Low_complexity 1 36 0 3 641 180 0 0 0 chr3L 7431560 7431580 -17111977 + (ACATG)n Simple_repeat Simple_repeat 1 20 0 3 641 529 240 127 105 chr3L 7432579 7432807 -17110750 - DNAREP1_DM LINE Penelope 0 594 362 3 641 469 214 49 61 chr3L 7432811 7432975 -17110582 - DNAREP1_DM LINE Penelope -430 164 3 3 641 27 49 0 0 chr3L 7434853 7434894 -17108663 + AT_rich Low_complexity Low_complexity 1 41 0 3 641 225 159 0 0 chr3L 7436829 7436873 -17106684 + (TGAA)n Simple_repeat Simple_repeat 1 44 0 3 641 251 170 0 36 chr3L 7439795 7439850 -17103707 + T-rich Low_complexity Low_complexity 5 57 0 3 641 405 133 0 0 chr3L 7443014 7443089 -17100468 + (CAG)n Simple_repeat Simple_repeat 1 75 0 3 641 195 114 0 0 chr3L 7443419 7443454 -17100103 + (CAG)n Simple_repeat Simple_repeat 1 35 0 3 641 298 161 37 0 chr3L 7443544 7443625 -17099932 + ROO_I LTR Pao 649 732 -7524 3 641 25 0 0 0 chr3L 7443903 7443928 -17099629 + AT_rich Low_complexity Low_complexity 1 25 0 3 641 22 0 0 0 chr3L 7445251 7445273 -17098284 + AT_rich Low_complexity Low_complexity 1 22 0 3 641 206 200 67 0 chr3L 7447106 7447166 -17096391 + (TATATG)n Simple_repeat Simple_repeat 5 68 0 3 641 336 64 0 0 chr3L 7447815 7447862 -17095695 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 641 255 79 0 0 chr3L 7453821 7453859 -17089698 + (GATTG)n Simple_repeat Simple_repeat 3 40 0 3 641 22 0 0 0 chr3L 7455175 7455197 -17088360 + AT_rich Low_complexity Low_complexity 1 22 0 3 641 21 0 0 0 chr3L 7457007 7457028 -17086529 + AT_rich Low_complexity Low_complexity 1 21 0 3 641 28 29 0 0 chr3L 7464100 7464135 -17079422 + AT_rich Low_complexity Low_complexity 1 35 0 3 641 183 42 0 0 chr3L 7464400 7464424 -17079133 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 3 641 35 0 0 0 chr3L 7467077 7467112 -17076445 + AT_rich Low_complexity Low_complexity 1 35 0 3 641 21 57 0 0 chr3L 7469369 7469404 -17074153 + AT_rich Low_complexity Low_complexity 1 35 0 3 641 202 194 0 0 chr3L 7470379 7470415 -17073142 + (TCG)n Simple_repeat Simple_repeat 2 37 0 3 642 29 0 0 0 chr3L 7471588 7471617 -17071940 + AT_rich Low_complexity Low_complexity 1 29 0 3 642 24 0 0 0 chr3L 7475721 7475745 -17067812 + AT_rich Low_complexity Low_complexity 1 24 0 3 642 23 0 0 0 chr3L 7477631 7477654 -17065903 + AT_rich Low_complexity Low_complexity 1 23 0 3 642 43 20 0 0 chr3L 7477824 7477874 -17065683 + AT_rich Low_complexity Low_complexity 1 50 0 3 642 38 61 0 0 chr3L 7481051 7481117 -17062440 + AT_rich Low_complexity Low_complexity 1 66 0 3 642 23 101 0 0 chr3L 7482521 7482600 -17060957 + AT_rich Low_complexity Low_complexity 1 79 0 3 642 32 26 0 0 chr3L 7482866 7482905 -17060652 + AT_rich Low_complexity Low_complexity 1 39 0 3 642 205 261 0 0 chr3L 7483256 7483321 -17060236 + T-rich Low_complexity Low_complexity 1 65 0 3 642 43256 1 0 0 chr3L 7491925 7496618 -17046939 + FW_DM LINE Jockey 1 4692 0 3 642 21 57 0 0 chr3L 7496651 7496686 -17046871 + AT_rich Low_complexity Low_complexity 1 35 0 3 642 21 36 0 0 chr3L 7501066 7501094 -17042463 + AT_rich Low_complexity Low_complexity 1 28 0 3 642 21 0 0 0 chr3L 7502871 7502892 -17040665 + AT_rich Low_complexity Low_complexity 1 21 0 3 642 32 81 0 0 chr3L 7503828 7503902 -17039655 + AT_rich Low_complexity Low_complexity 1 74 0 3 642 202 309 0 0 chr3L 7506302 7506383 -17037174 + (CTG)n Simple_repeat Simple_repeat 2 82 0 3 642 24 0 0 0 chr3L 7510396 7510420 -17033137 + AT_rich Low_complexity Low_complexity 1 24 0 3 642 419 69 18 81 chr3L 7511952 7512063 -17031494 + (CAG)n Simple_repeat Simple_repeat 1 104 0 3 642 187 31 0 59 chr3L 7512341 7512375 -17031182 + (CGAT)n Simple_repeat Simple_repeat 4 35 0 3 642 28 0 0 0 chr3L 7515184 7515212 -17028345 + AT_rich Low_complexity Low_complexity 1 28 0 3 642 297 75 0 0 chr3L 7516388 7516428 -17027129 + (TCCA)n Simple_repeat Simple_repeat 3 42 0 3 642 225 174 0 0 chr3L 7520919 7520965 -17022592 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 642 218 224 0 17 chr3L 7522172 7522231 -17021326 + (CA)n Simple_repeat Simple_repeat 1 58 0 3 642 21 36 0 0 chr3L 7523197 7523225 -17020332 + AT_rich Low_complexity Low_complexity 1 28 0 3 642 22 0 0 0 chr3L 7528072 7528094 -17015463 + AT_rich Low_complexity Low_complexity 1 22 0 3 642 186 43 0 0 chr3L 7531170 7531193 -17012364 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 642 23 68 0 0 chr3L 7531346 7531390 -17012167 + AT_rich Low_complexity Low_complexity 1 44 0 3 642 23 0 0 0 chr3L 7533233 7533256 -17010301 + AT_rich Low_complexity Low_complexity 1 23 0 3 642 243 0 0 0 chr3L 7538367 7538394 -17005163 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 642 21 36 0 0 chr3L 7542585 7542613 -17000944 + AT_rich Low_complexity Low_complexity 1 28 0 3 642 27 0 0 0 chr3L 7548883 7548910 -16994647 + AT_rich Low_complexity Low_complexity 1 27 0 3 642 25 0 0 0 chr3L 7550729 7550754 -16992803 + AT_rich Low_complexity Low_complexity 1 25 0 3 642 23 0 0 0 chr3L 7550936 7550959 -16992598 + AT_rich Low_complexity Low_complexity 1 23 0 3 642 24 0 0 0 chr3L 7551930 7551954 -16991603 + AT_rich Low_complexity Low_complexity 1 24 0 3 642 330 107 0 0 chr3L 7552766 7552822 -16990735 + (CA)n Simple_repeat Simple_repeat 2 57 0 3 642 612 0 0 0 chr3L 7553782 7553850 -16989707 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 642 198 171 0 0 chr3L 7554542 7554583 -16988974 + (CAGA)n Simple_repeat Simple_repeat 1 41 0 3 642 195 42 0 0 chr3L 7557691 7557715 -16985842 + (CCA)n Simple_repeat Simple_repeat 2 25 0 3 642 23 33 0 0 chr3L 7562132 7562162 -16981395 + AT_rich Low_complexity Low_complexity 1 30 0 3 642 25 31 0 0 chr3L 7562340 7562372 -16981185 + AT_rich Low_complexity Low_complexity 1 32 0 3 642 260 102 0 20 chr3L 7563547 7563597 -16979960 + (CATCG)n Simple_repeat Simple_repeat 4 52 0 3 642 22 0 0 0 chr3L 7565211 7565233 -16978324 + AT_rich Low_complexity Low_complexity 1 22 0 3 642 192 97 0 0 chr3L 7567449 7567480 -16976077 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 642 201 39 0 0 chr3L 7567687 7567713 -16975844 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 3 642 21 36 0 0 chr3L 7568897 7568925 -16974632 + AT_rich Low_complexity Low_complexity 1 28 0 3 642 26 30 0 0 chr3L 7569151 7569184 -16974373 + AT_rich Low_complexity Low_complexity 1 33 0 3 642 27 29 0 0 chr3L 7569894 7569928 -16973629 + AT_rich Low_complexity Low_complexity 1 34 0 3 642 186 103 0 0 chr3L 7571717 7571746 -16971811 + (TTTTTG)n Simple_repeat Simple_repeat 4 32 0 3 642 195 100 0 0 chr3L 7574455 7574485 -16969072 + (CGAGT)n Simple_repeat Simple_repeat 3 32 0 3 642 186 143 0 0 chr3L 7575279 7575314 -16968243 + (T)n Simple_repeat Simple_repeat 1 35 0 3 642 21 0 0 0 chr3L 7584122 7584143 -16959414 + AT_rich Low_complexity Low_complexity 1 21 0 3 642 279 253 13 0 chr3L 7584824 7584899 -16958658 + (TTG)n Simple_repeat Simple_repeat 3 78 0 3 642 28 29 0 0 chr3L 7585305 7585340 -16958217 + AT_rich Low_complexity Low_complexity 1 35 0 3 642 34 65 0 0 chr3L 7585369 7585431 -16958126 + AT_rich Low_complexity Low_complexity 1 62 0 3 642 21 0 0 0 chr3L 7589956 7589977 -16953580 + AT_rich Low_complexity Low_complexity 1 21 0 3 642 215 61 0 29 chr3L 7590166 7590200 -16953357 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 642 22 0 0 0 chr3L 7591555 7591577 -16951980 + AT_rich Low_complexity Low_complexity 1 22 0 3 642 189 121 0 0 chr3L 7591781 7591814 -16951743 + (CGGA)n Simple_repeat Simple_repeat 1 33 0 3 642 180 0 0 0 chr3L 7592175 7592195 -16951362 + (A)n Simple_repeat Simple_repeat 1 20 0 3 642 22 0 0 0 chr3L 7595574 7595596 -16947961 + AT_rich Low_complexity Low_complexity 1 22 0 3 642 21 0 0 0 chr3L 7596636 7596657 -16946900 + AT_rich Low_complexity Low_complexity 1 21 0 3 642 25 51 0 0 chr3L 7599453 7599492 -16944065 + AT_rich Low_complexity Low_complexity 1 39 0 3 642 225 94 0 0 chr3L 7600644 7600676 -16942881 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 642 31 44 0 0 chr3L 7601398 7601443 -16942114 + AT_rich Low_complexity Low_complexity 1 45 0 3 642 23 68 0 0 chr3L 7601516 7601560 -16941997 + AT_rich Low_complexity Low_complexity 1 44 0 3 642 207 69 0 0 chr3L 7601796 7601825 -16941732 + (GCTTG)n Simple_repeat Simple_repeat 5 33 0 3 643 225 220 0 48 chr3L 7603058 7603120 -16940437 + (CAG)n Simple_repeat Simple_repeat 3 61 0 3 643 21 0 0 0 chr3L 7604623 7604644 -16938913 + AT_rich Low_complexity Low_complexity 1 21 0 3 643 282 182 0 0 chr3L 7606265 7606331 -16937226 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 643 35 54 0 0 chr3L 7612821 7612877 -16930680 + AT_rich Low_complexity Low_complexity 1 56 0 3 643 186 133 0 0 chr3L 7614760 7614790 -16928767 + (TGGGGG)n Simple_repeat Simple_repeat 4 33 0 3 643 186 103 0 0 chr3L 7615231 7615260 -16928297 + (CAT)n Simple_repeat Simple_repeat 3 31 0 3 643 282 73 0 0 chr3L 7615643 7615684 -16927873 + (A)n Simple_repeat Simple_repeat 1 41 0 3 643 300 53 0 0 chr3L 7617765 7617803 -16925754 + (CAG)n Simple_repeat Simple_repeat 2 39 0 3 643 246 81 0 0 chr3L 7617976 7618013 -16925544 + (CAG)n Simple_repeat Simple_repeat 3 39 0 3 643 26 30 0 0 chr3L 7620253 7620286 -16923271 + AT_rich Low_complexity Low_complexity 1 33 0 3 643 21 89 0 0 chr3L 7620339 7620395 -16923162 + AT_rich Low_complexity Low_complexity 1 56 0 3 643 188 122 24 0 chr3L 7620885 7620926 -16922631 + (CATTT)n Simple_repeat Simple_repeat 5 46 0 3 643 22 0 0 0 chr3L 7621490 7621512 -16922045 + AT_rich Low_complexity Low_complexity 1 22 0 3 643 259 141 36 71 chr3L 7621651 7621735 -16921822 - ROO_I LTR Pao -7515 741 661 3 643 180 231 0 0 chr3L 7625695 7625747 -16917810 + (TTG)n Simple_repeat Simple_repeat 1 52 0 3 643 26 64 0 0 chr3L 7632246 7632293 -16911264 + AT_rich Low_complexity Low_complexity 1 47 0 3 643 29 28 0 0 chr3L 7635012 7635048 -16908509 + AT_rich Low_complexity Low_complexity 1 36 0 3 643 28 0 0 0 chr3L 7635587 7635615 -16907942 + AT_rich Low_complexity Low_complexity 1 28 0 3 643 26 50 0 0 chr3L 7636567 7636607 -16906950 + AT_rich Low_complexity Low_complexity 1 40 0 3 643 195 139 0 0 chr3L 7639240 7639276 -16904281 + (AAGTG)n Simple_repeat Simple_repeat 1 36 0 3 643 22 35 0 0 chr3L 7641134 7641163 -16902394 + AT_rich Low_complexity Low_complexity 1 29 0 3 643 233 163 0 20 chr3L 7641936 7641986 -16901571 + (CAT)n Simple_repeat Simple_repeat 3 51 0 3 643 189 254 0 0 chr3L 7643106 7643161 -16900396 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 643 200 191 15 31 chr3L 7643162 7643227 -16900330 + A-rich Low_complexity Low_complexity 4 67 0 3 643 25 65 0 0 chr3L 7644919 7644965 -16898592 + AT_rich Low_complexity Low_complexity 1 46 0 3 643 261 169 55 27 chr3L 7647584 7647657 -16895900 + ROO_I LTR Pao 664 738 -7518 3 643 31 33 0 47 chr3L 7647960 7648024 -16895533 + AT_rich Low_complexity Low_complexity 1 61 0 3 643 21 0 0 0 chr3L 7648474 7648495 -16895062 + AT_rich Low_complexity Low_complexity 1 21 0 3 643 32 26 0 0 chr3L 7649115 7649154 -16894403 + AT_rich Low_complexity Low_complexity 1 39 0 3 643 210 286 0 0 chr3L 7649545 7649601 -16893956 + CT-rich Low_complexity Low_complexity 1 56 0 3 643 210 143 0 0 chr3L 7655942 7655977 -16887580 + (CACCAT)n Simple_repeat Simple_repeat 1 35 0 3 643 203 245 0 0 chr3L 7659377 7659426 -16884131 + (TGG)n Simple_repeat Simple_repeat 3 51 0 3 643 258 187 13 39 chr3L 7699936 7700014 -16843543 + (TTG)n Simple_repeat Simple_repeat 1 76 0 3 643 22 70 0 0 chr3L 7705301 7705344 -16838213 + AT_rich Low_complexity Low_complexity 1 43 0 3 643 243 233 0 0 chr3L 7706583 7706643 -16836914 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 643 31 58 0 0 chr3L 7707044 7707096 -16836461 + AT_rich Low_complexity Low_complexity 1 52 0 3 643 25 51 0 0 chr3L 7712116 7712155 -16831402 + AT_rich Low_complexity Low_complexity 1 39 0 3 643 21 0 0 0 chr3L 7720849 7720870 -16822687 + AT_rich Low_complexity Low_complexity 1 21 0 3 643 200 114 0 28 chr3L 7721661 7721697 -16821860 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 643 21 0 0 0 chr3L 7726419 7726440 -16817117 + AT_rich Low_complexity Low_complexity 1 21 0 3 643 26 0 0 0 chr3L 7727288 7727314 -16816243 + AT_rich Low_complexity Low_complexity 1 26 0 3 643 24 0 0 0 chr3L 7728539 7728563 -16814994 + AT_rich Low_complexity Low_complexity 1 24 0 3 643 22 0 0 0 chr3L 7728734 7728756 -16814801 + AT_rich Low_complexity Low_complexity 1 22 0 3 643 27 92 0 0 chr3L 7731908 7731984 -16811573 + AT_rich Low_complexity Low_complexity 1 76 0 3 644 25 0 0 0 chr3L 7734800 7734825 -16808732 + AT_rich Low_complexity Low_complexity 1 25 0 3 644 27 29 0 0 chr3L 7735663 7735697 -16807860 + AT_rich Low_complexity Low_complexity 1 34 0 3 644 29 47 0 0 chr3L 7737375 7737418 -16806139 + AT_rich Low_complexity Low_complexity 1 43 0 3 644 216 0 0 0 chr3L 7740352 7740376 -16803181 + (CAT)n Simple_repeat Simple_repeat 1 24 0 3 644 210 300 0 0 chr3L 7740498 7740578 -16802979 + A-rich Low_complexity Low_complexity 1 80 0 3 644 43 35 0 0 chr3L 7745957 7746014 -16797543 + AT_rich Low_complexity Low_complexity 1 57 0 3 644 30 59 0 0 chr3L 7746112 7746163 -16797394 + AT_rich Low_complexity Low_complexity 1 51 0 3 644 22 35 0 0 chr3L 7747261 7747290 -16796267 + AT_rich Low_complexity Low_complexity 1 29 0 3 644 26 30 0 0 chr3L 7748234 7748267 -16795290 + AT_rich Low_complexity Low_complexity 1 33 0 3 644 284 48 24 0 chr3L 7749445 7749487 -16794070 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 644 25 51 0 0 chr3L 7750317 7750356 -16793201 + AT_rich Low_complexity Low_complexity 1 39 0 3 644 23 0 0 0 chr3L 7752195 7752218 -16791339 + AT_rich Low_complexity Low_complexity 1 23 0 3 644 29 28 0 0 chr3L 7753886 7753922 -16789635 + AT_rich Low_complexity Low_complexity 1 36 0 3 644 233 145 0 52 chr3L 7757471 7757529 -16786028 + (CTG)n Simple_repeat Simple_repeat 3 57 0 3 644 440 164 0 0 chr3L 7757892 7757996 -16785561 - ROO_I LTR Pao -7512 744 641 3 644 208 310 0 0 chr3L 7757997 7758113 -16785444 + (CTG)n Simple_repeat Simple_repeat 1 116 0 3 644 310 174 35 0 chr3L 7758669 7758755 -16784802 - ROO_I LTR Pao -7527 729 641 3 644 21 0 0 0 chr3L 7762370 7762391 -16781166 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 282 73 0 0 chr3L 7765555 7765596 -16777961 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 644 29 28 0 0 chr3L 7766950 7766986 -16776571 + AT_rich Low_complexity Low_complexity 1 36 0 3 644 38 0 0 0 chr3L 7767170 7767208 -16776349 + AT_rich Low_complexity Low_complexity 1 38 0 3 644 23 33 0 0 chr3L 7767307 7767337 -16776220 + AT_rich Low_complexity Low_complexity 1 30 0 3 644 21 0 0 0 chr3L 7767533 7767554 -16776003 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 21 82 0 0 chr3L 7769282 7769331 -16774226 + AT_rich Low_complexity Low_complexity 1 49 0 3 644 22 35 0 0 chr3L 7770030 7770059 -16773498 + AT_rich Low_complexity Low_complexity 1 29 0 3 644 204 125 0 0 chr3L 7773357 7773389 -16770168 + (TGG)n Simple_repeat Simple_repeat 1 32 0 3 644 22 0 0 0 chr3L 7774321 7774343 -16769214 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 32 0 0 0 chr3L 7776398 7776430 -16767127 + GC_rich Low_complexity Low_complexity 1 32 0 3 644 195 42 0 0 chr3L 7777223 7777247 -16766310 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 644 23 54 0 0 chr3L 7778326 7778363 -16765194 + AT_rich Low_complexity Low_complexity 1 37 0 3 644 22 0 0 0 chr3L 7779673 7779695 -16763862 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 27 0 0 0 chr3L 7779966 7779993 -16763564 + AT_rich Low_complexity Low_complexity 1 27 0 3 644 28 79 0 0 chr3L 7780616 7780679 -16762878 + AT_rich Low_complexity Low_complexity 1 63 0 3 644 189 0 0 0 chr3L 7780859 7780880 -16762677 + (A)n Simple_repeat Simple_repeat 1 21 0 3 644 214 119 48 0 chr3L 7783192 7783234 -16760323 + (TTG)n Simple_repeat Simple_repeat 2 45 0 3 644 333 159 0 0 chr3L 7783373 7783436 -16760121 + (TTG)n Simple_repeat Simple_repeat 1 63 0 3 644 34 0 0 0 chr3L 7784456 7784490 -16759067 + AT_rich Low_complexity Low_complexity 1 34 0 3 644 223 186 0 0 chr3L 7784844 7784887 -16758670 + T-rich Low_complexity Low_complexity 1 43 0 3 644 3523 5 7 7 chr3L 7786866 7787280 -16756277 - DM297_LTR LTR Gypsy 0 414 1 3 644 53309 6 0 0 chr3L 7787280 7793447 -16750110 - DM297_I LTR Gypsy 0 6167 1 3 644 3523 5 7 7 chr3L 7793447 7793861 -16749696 - DM297_LTR LTR Gypsy 0 414 1 3 644 22 0 0 0 chr3L 7795194 7795216 -16748341 + AT_rich Low_complexity Low_complexity 1 22 0 3 644 25 0 0 0 chr3L 7796291 7796316 -16747241 + AT_rich Low_complexity Low_complexity 1 25 0 3 644 21 36 0 0 chr3L 7797679 7797707 -16745850 + AT_rich Low_complexity Low_complexity 1 28 0 3 644 219 36 0 0 chr3L 7798047 7798075 -16745482 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 644 24 0 0 0 chr3L 7802359 7802383 -16741174 + AT_rich Low_complexity Low_complexity 1 24 0 3 644 21 0 0 0 chr3L 7802582 7802603 -16740954 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 206 273 10 29 chr3L 7802767 7802869 -16740688 + T-rich Low_complexity Low_complexity 3 102 0 3 644 24 0 0 0 chr3L 7803068 7803092 -16740465 + AT_rich Low_complexity Low_complexity 1 24 0 3 644 243 0 0 0 chr3L 7803879 7803906 -16739651 + (CTG)n Simple_repeat Simple_repeat 3 29 0 3 644 25 65 0 0 chr3L 7804137 7804183 -16739374 + AT_rich Low_complexity Low_complexity 1 46 0 3 644 217 213 33 0 chr3L 7805857 7805918 -16737639 + T-rich Low_complexity Low_complexity 3 65 0 3 644 201 159 48 0 chr3L 7805989 7806052 -16737505 + (TA)n Simple_repeat Simple_repeat 2 67 0 3 644 26 0 0 0 chr3L 7806450 7806476 -16737081 + AT_rich Low_complexity Low_complexity 1 26 0 3 644 180 125 0 0 chr3L 7806864 7806896 -16736661 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 3 644 28 48 0 0 chr3L 7807072 7807114 -16736443 + AT_rich Low_complexity Low_complexity 1 42 0 3 644 247 169 17 17 chr3L 7809318 7809378 -16734179 + (TTA)n Simple_repeat Simple_repeat 2 61 0 3 644 217 193 11 46 chr3L 7811559 7811646 -16731911 + (CAAA)n Simple_repeat Simple_repeat 4 87 0 3 644 231 152 0 0 chr3L 7812021 7812067 -16731490 + T-rich Low_complexity Low_complexity 1 46 0 3 644 234 263 13 0 chr3L 7813191 7813267 -16730290 + A-rich Low_complexity Low_complexity 6 82 0 3 644 24 0 0 0 chr3L 7814623 7814647 -16728910 + AT_rich Low_complexity Low_complexity 1 24 0 3 644 228 232 0 0 chr3L 7814833 7814889 -16728668 + CT-rich Low_complexity Low_complexity 2 57 0 3 644 281 160 0 39 chr3L 7814945 7815023 -16728534 + (TTG)n Simple_repeat Simple_repeat 1 75 0 3 644 219 180 20 0 chr3L 7815091 7815141 -16728416 + (TTG)n Simple_repeat Simple_repeat 1 51 0 3 644 24 53 0 0 chr3L 7818574 7818612 -16724945 + AT_rich Low_complexity Low_complexity 1 38 0 3 644 426 167 0 0 chr3L 7818766 7818850 -16724707 + (TTG)n Simple_repeat Simple_repeat 1 84 0 3 644 306 125 0 0 chr3L 7818979 7819027 -16724530 + (TTG)n Simple_repeat Simple_repeat 1 48 0 3 644 234 257 42 42 chr3L 7819060 7819178 -16724379 - ROO_I LTR Pao -7500 756 639 3 644 273 194 0 104 chr3L 7819529 7819644 -16723913 - ROO_I LTR Pao -7513 743 641 3 644 224 311 20 26 chr3L 7819944 7820096 -16723461 + T-rich Low_complexity Low_complexity 5 155 0 3 644 21 0 0 0 chr3L 7820633 7820654 -16722903 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 233 277 0 0 chr3L 7823597 7823662 -16719895 - ROO_I LTR Pao -7539 717 653 3 644 181 175 0 45 chr3L 7823755 7823821 -16719736 + (CAG)n Simple_repeat Simple_repeat 3 65 0 3 644 256 200 10 10 chr3L 7824033 7824134 -16719423 - ROO_I LTR Pao -7517 739 639 3 644 285 140 0 0 chr3L 7824166 7824223 -16719334 + (CTG)n Simple_repeat Simple_repeat 3 59 0 3 644 246 136 0 0 chr3L 7824262 7824306 -16719251 + (CTG)n Simple_repeat Simple_repeat 1 44 0 3 644 269 257 19 29 chr3L 7824471 7824575 -16718982 - ROO_I LTR Pao -7513 743 641 3 644 22 70 0 0 chr3L 7825542 7825585 -16717972 + AT_rich Low_complexity Low_complexity 1 43 0 3 644 280 203 16 0 chr3L 7825842 7825906 -16717651 + CT-rich Low_complexity Low_complexity 2 66 0 3 644 230 273 0 0 chr3L 7826232 7826287 -16717270 + (CCG)n Simple_repeat Simple_repeat 3 57 0 3 644 21 0 0 0 chr3L 7826664 7826685 -16716872 + AT_rich Low_complexity Low_complexity 1 21 0 3 644 21 36 0 0 chr3L 7826738 7826766 -16716791 + AT_rich Low_complexity Low_complexity 1 28 0 3 644 222 218 11 33 chr3L 7827681 7827771 -16715786 + (TAAA)n Simple_repeat Simple_repeat 4 91 0 3 644 28 29 0 0 chr3L 7828805 7828840 -16714717 + AT_rich Low_complexity Low_complexity 1 35 0 3 644 24 67 0 0 chr3L 7830515 7830560 -16712997 + AT_rich Low_complexity Low_complexity 1 45 0 3 644 23 0 0 0 chr3L 7831654 7831677 -16711880 + AT_rich Low_complexity Low_complexity 1 23 0 3 644 25 51 0 0 chr3L 7831992 7832031 -16711526 + AT_rich Low_complexity Low_complexity 1 39 0 3 644 210 162 0 0 chr3L 7833297 7833334 -16710223 + T-rich Low_complexity Low_complexity 1 37 0 3 644 28 29 0 0 chr3L 7836038 7836073 -16707484 + AT_rich Low_complexity Low_complexity 1 35 0 3 644 209 30 61 0 chr3L 7837517 7837550 -16706007 + (CATA)n Simple_repeat Simple_repeat 2 36 0 3 644 291 28 0 0 chr3L 7840159 7840195 -16703362 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 644 216 0 0 0 chr3L 7841741 7841765 -16701792 + (TTG)n Simple_repeat Simple_repeat 3 26 0 3 644 48 103 0 0 chr3L 7845172 7845346 -16698211 + AT_rich Low_complexity Low_complexity 1 174 0 3 644 244 250 11 11 chr3L 7846736 7846825 -16696732 + (TA)n Simple_repeat Simple_repeat 2 90 0 3 644 222 250 57 0 chr3L 7847114 7847202 -16696355 + T-rich Low_complexity Low_complexity 4 96 0 3 644 23 0 0 0 chr3L 7847744 7847767 -16695790 + AT_rich Low_complexity Low_complexity 1 23 0 3 644 207 0 0 0 chr3L 7847786 7847809 -16695748 + (T)n Simple_repeat Simple_repeat 1 23 0 3 644 183 80 0 0 chr3L 7848172 7848197 -16695360 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 644 21 71 0 0 chr3L 7849043 7849085 -16694472 + AT_rich Low_complexity Low_complexity 1 42 0 3 644 183 170 0 0 chr3L 7849719 7849766 -16693791 + T-rich Low_complexity Low_complexity 1 47 0 3 644 22 35 0 0 chr3L 7850556 7850585 -16692972 + AT_rich Low_complexity Low_complexity 1 29 0 3 644 225 132 0 0 chr3L 7851034 7851072 -16692485 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 3 644 228 170 0 0 chr3L 7853259 7853312 -16690245 + (TG)n Simple_repeat Simple_repeat 2 54 0 3 644 25 65 0 0 chr3L 7855093 7855139 -16688418 + AT_rich Low_complexity Low_complexity 1 46 0 3 644 189 0 0 0 chr3L 7855228 7855249 -16688308 + (T)n Simple_repeat Simple_repeat 1 21 0 3 644 215 103 51 0 chr3L 7855358 7855397 -16688160 + A-rich Low_complexity Low_complexity 1 41 0 3 644 25 51 0 0 chr3L 7856016 7856055 -16687502 + AT_rich Low_complexity Low_complexity 1 39 0 3 644 237 224 0 0 chr3L 7856556 7856605 -16686952 + (TTG)n Simple_repeat Simple_repeat 1 49 0 3 644 21 36 0 0 chr3L 7857001 7857029 -16686528 + AT_rich Low_complexity Low_complexity 1 28 0 3 644 24 0 0 0 chr3L 7859720 7859744 -16683813 + AT_rich Low_complexity Low_complexity 1 24 0 3 644 42 92 0 0 chr3L 7860922 7861041 -16682516 + AT_rich Low_complexity Low_complexity 1 119 0 3 644 21 36 0 0 chr3L 7861474 7861502 -16682055 + AT_rich Low_complexity Low_complexity 1 28 0 3 644 432 0 0 0 chr3L 7862795 7862843 -16680714 + (CAA)n Simple_repeat Simple_repeat 1 48 0 3 644 216 97 0 0 chr3L 7863704 7863735 -16679822 + (TTG)n Simple_repeat Simple_repeat 1 31 0 3 644 181 107 34 51 chr3L 7864178 7864237 -16679320 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 3 645 255 61 0 0 chr3L 7865322 7865355 -16678202 + (CTG)n Simple_repeat Simple_repeat 2 34 0 3 645 22 0 0 0 chr3L 7867584 7867606 -16675951 + AT_rich Low_complexity Low_complexity 1 22 0 3 645 188 200 0 16 chr3L 7867762 7867823 -16675734 + (ACTG)n Simple_repeat Simple_repeat 3 62 0 3 645 205 196 45 0 chr3L 7868793 7868862 -16674695 + A-rich Low_complexity Low_complexity 1 72 0 3 645 207 162 0 0 chr3L 7870952 7870989 -16672568 + (CAG)n Simple_repeat Simple_repeat 2 38 0 3 645 27 29 0 0 chr3L 7872167 7872201 -16671356 + AT_rich Low_complexity Low_complexity 1 34 0 3 645 252 0 0 0 chr3L 7872331 7872359 -16671198 + (T)n Simple_repeat Simple_repeat 1 28 0 3 645 246 246 0 0 chr3L 7872972 7873033 -16670524 + A-rich Low_complexity Low_complexity 1 61 0 3 645 189 147 0 0 chr3L 7874493 7874527 -16669030 + (TATATG)n Simple_repeat Simple_repeat 3 36 0 3 645 207 0 0 0 chr3L 7874810 7874833 -16668724 + (T)n Simple_repeat Simple_repeat 1 23 0 3 645 26 0 0 0 chr3L 7875126 7875152 -16668405 + AT_rich Low_complexity Low_complexity 1 26 0 3 645 34 42 0 0 chr3L 7875728 7875776 -16667781 + AT_rich Low_complexity Low_complexity 1 48 0 3 645 198 0 0 0 chr3L 7877052 7877074 -16666483 + (A)n Simple_repeat Simple_repeat 1 22 0 3 645 3592 2 0 2 chr3L 7879668 7880071 -16663486 + STALKER4_LTR LTR Gypsy 1 402 0 3 645 306 105 0 50 chr3L 7880075 7880135 -16663422 + Stalker2_I LTR Gypsy 1 57 -7345 3 645 286 55 309 0 chr3L 7880303 7880358 -16663199 + Stalker2_I LTR Gypsy 242 313 -7089 3 645 11793 1 1 0 chr3L 7880359 7881722 -16661835 + STALKER4_I LTR Gypsy 5167 6530 0 3 645 3592 2 0 2 chr3L 7881722 7882125 -16661432 + STALKER4_LTR LTR Gypsy 1 402 0 3 645 326 209 0 0 chr3L 7883213 7883318 -16660239 + ROO_I LTR Pao 644 748 -7508 3 645 21 36 0 0 chr3L 7883724 7883752 -16659805 + AT_rich Low_complexity Low_complexity 1 28 0 3 645 198 0 0 0 chr3L 7885073 7885095 -16658462 + (ATTG)n Simple_repeat Simple_repeat 4 25 0 3 645 189 0 0 0 chr3L 7885340 7885361 -16658196 + (CAG)n Simple_repeat Simple_repeat 1 21 0 3 645 28 29 0 0 chr3L 7887878 7887913 -16655644 + AT_rich Low_complexity Low_complexity 1 35 0 3 645 200 125 25 0 chr3L 7892521 7892561 -16650996 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 645 210 71 0 0 chr3L 7893294 7893322 -16650235 + (ATG)n Simple_repeat Simple_repeat 1 28 0 3 645 22 35 0 0 chr3L 7902984 7903013 -16640544 + AT_rich Low_complexity Low_complexity 1 29 0 3 645 24 32 0 0 chr3L 7903887 7903918 -16639639 + AT_rich Low_complexity Low_complexity 1 31 0 3 645 25 0 0 0 chr3L 7904770 7904795 -16638762 + AT_rich Low_complexity Low_complexity 1 25 0 3 645 4022 0 0 0 chr3L 7909983 7910411 -16633146 + ROO_LTR LTR Pao 1 428 0 3 645 75055 1 2 2 chr3L 7910411 7918668 -16624889 + ROO_I LTR Pao 1 8256 0 3 645 4022 0 0 0 chr3L 7918668 7919096 -16624461 + ROO_LTR LTR Pao 1 428 0 3 645 22 56 0 0 chr3L 7919209 7919245 -16624312 + AT_rich Low_complexity Low_complexity 1 36 0 3 645 21 0 0 0 chr3L 7919269 7919290 -16624267 + AT_rich Low_complexity Low_complexity 1 21 0 3 645 252 59 0 0 chr3L 7919482 7919516 -16624041 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 645 47 44 0 0 chr3L 7920191 7920259 -16623298 + AT_rich Low_complexity Low_complexity 1 68 0 3 645 183 42 0 0 chr3L 7920722 7920746 -16622811 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 3 645 24 32 0 0 chr3L 7929312 7929343 -16614214 + AT_rich Low_complexity Low_complexity 1 31 0 3 645 21 0 0 0 chr3L 7935659 7935680 -16607877 + AT_rich Low_complexity Low_complexity 1 21 0 3 645 210 71 0 0 chr3L 7936614 7936642 -16606915 + (CACTC)n Simple_repeat Simple_repeat 5 32 0 3 645 22 35 0 0 chr3L 7938809 7938838 -16604719 + AT_rich Low_complexity Low_complexity 1 29 0 3 645 34 24 0 0 chr3L 7939425 7939466 -16604091 + AT_rich Low_complexity Low_complexity 1 41 0 3 645 195 42 0 0 chr3L 7943998 7944022 -16599535 + (CAG)n Simple_repeat Simple_repeat 1 24 0 3 645 35 0 0 0 chr3L 7945504 7945539 -16598018 + AT_rich Low_complexity Low_complexity 1 35 0 3 645 230 246 0 17 chr3L 7945878 7945936 -16597621 + (TTG)n Simple_repeat Simple_repeat 3 59 0 3 645 26 88 0 0 chr3L 7946270 7946338 -16597219 + AT_rich Low_complexity Low_complexity 1 68 0 3 645 24 32 0 0 chr3L 7948941 7948972 -16594585 + AT_rich Low_complexity Low_complexity 1 31 0 3 645 186 103 0 0 chr3L 7949813 7949842 -16593715 + (TTG)n Simple_repeat Simple_repeat 1 29 0 3 645 26 30 0 0 chr3L 7950234 7950267 -16593290 + AT_rich Low_complexity Low_complexity 1 33 0 3 645 21 71 0 0 chr3L 7950277 7950319 -16593238 + AT_rich Low_complexity Low_complexity 1 42 0 3 645 35 54 0 0 chr3L 7953993 7954049 -16589508 + AT_rich Low_complexity Low_complexity 1 56 0 3 645 180 0 0 0 chr3L 7954375 7954395 -16589162 + (ATG)n Simple_repeat Simple_repeat 3 22 0 3 645 23 0 0 0 chr3L 7955122 7955145 -16588412 + AT_rich Low_complexity Low_complexity 1 23 0 3 645 53 57 0 0 chr3L 7955194 7955282 -16588275 + AT_rich Low_complexity Low_complexity 1 88 0 3 645 25 0 0 0 chr3L 7955321 7955346 -16588211 + AT_rich Low_complexity Low_complexity 1 25 0 3 645 25 0 0 0 chr3L 7961999 7962024 -16581533 + AT_rich Low_complexity Low_complexity 1 25 0 3 645 41 21 0 0 chr3L 7968128 7968176 -16575381 + AT_rich Low_complexity Low_complexity 1 48 0 3 645 42 36 0 0 chr3L 7969393 7969449 -16574108 + AT_rich Low_complexity Low_complexity 1 56 0 3 645 189 74 0 0 chr3L 7970872 7970899 -16572658 + (A)n Simple_repeat Simple_repeat 1 27 0 3 645 207 259 0 0 chr3L 7973697 7973751 -16569806 + (CCA)n Simple_repeat Simple_repeat 3 56 0 3 645 186 43 0 0 chr3L 7974815 7974838 -16568719 + (GCTG)n Simple_repeat Simple_repeat 2 24 0 3 645 220 305 0 12 chr3L 7976723 7976806 -16566751 + (TATG)n Simple_repeat Simple_repeat 1 82 0 3 645 241 210 32 0 chr3L 7977078 7977140 -16566417 + (ACTCG)n Simple_repeat Simple_repeat 1 64 0 3 645 261 57 0 0 chr3L 7978115 7978150 -16565407 + (CTTG)n Simple_repeat Simple_repeat 1 35 0 3 645 219 139 0 0 chr3L 7978354 7978390 -16565167 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 645 9625 22 2 28 chr3L 7978522 7979848 -16563709 - FB4_DM DNA Tc1 0 4089 2798 3 645 4786 31 4 51 chr3L 7980084 7980788 -16562769 + FB4_DM DNA Tc1 3419 4089 0 3 645 261 302 12 0 chr3L 7983272 7983358 -16560199 + (CAG)n Simple_repeat Simple_repeat 3 89 0 3 645 192 200 0 0 chr3L 7984357 7984402 -16559155 + (CACCAT)n Simple_repeat Simple_repeat 4 48 0 3 645 49 0 0 0 chr3L 7985218 7985267 -16558290 + AT_rich Low_complexity Low_complexity 1 49 0 3 645 25 0 0 0 chr3L 7986539 7986564 -16556993 + AT_rich Low_complexity Low_complexity 1 25 0 3 645 351 136 0 0 chr3L 7988379 7988438 -16555119 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 645 24 67 0 0 chr3L 7990351 7990396 -16553161 + AT_rich Low_complexity Low_complexity 1 45 0 3 645 22 0 0 0 chr3L 7993447 7993469 -16550088 + AT_rich Low_complexity Low_complexity 1 22 0 3 645 219 88 0 0 chr3L 7994678 7994712 -16548845 + (TG)n Simple_repeat Simple_repeat 2 35 0 3 646 300 120 0 0 chr3L 7995713 7995763 -16547794 + (CAGT)n Simple_repeat Simple_repeat 4 53 0 3 646 21 0 0 0 chr3L 7998029 7998050 -16545507 + AT_rich Low_complexity Low_complexity 1 21 0 3 646 192 40 0 0 chr3L 7999303 7999328 -16544229 + (T)n Simple_repeat Simple_repeat 1 25 0 3 646 21 0 0 0 chr3L 8000794 8000815 -16542742 + AT_rich Low_complexity Low_complexity 1 21 0 3 646 21 36 0 0 chr3L 8001359 8001387 -16542170 + AT_rich Low_complexity Low_complexity 1 28 0 3 646 24 0 0 0 chr3L 8002355 8002379 -16541178 + AT_rich Low_complexity Low_complexity 1 24 0 3 646 303 154 0 0 chr3L 8007089 8007154 -16536403 + A-rich Low_complexity Low_complexity 1 65 0 3 646 21 36 0 0 chr3L 8010631 8010659 -16532898 + AT_rich Low_complexity Low_complexity 1 28 0 3 646 14661 148 46 107 chr3L 8012858 8017209 -16526348 - FB4_DM DNA Tc1 0 4089 1 3 646 22 56 0 0 chr3L 8018032 8018068 -16525489 + AT_rich Low_complexity Low_complexity 1 36 0 3 646 225 0 0 0 chr3L 8020534 8020559 -16522998 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 646 24 67 0 0 chr3L 8020968 8021013 -16522544 + AT_rich Low_complexity Low_complexity 1 45 0 3 646 221 340 0 0 chr3L 8021246 8021346 -16522211 + T-rich Low_complexity Low_complexity 1 100 0 3 646 261 151 0 0 chr3L 8024757 8024810 -16518747 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 646 282 56 0 0 chr3L 8026833 8026869 -16516688 + (AAATG)n Simple_repeat Simple_repeat 4 39 0 3 646 243 103 0 0 chr3L 8028075 8028114 -16515443 + (TCTCTG)n Simple_repeat Simple_repeat 2 40 0 3 646 288 0 0 0 chr3L 8028285 8028317 -16515240 + (GA)n Simple_repeat Simple_repeat 1 32 0 3 646 216 0 0 0 chr3L 8029645 8029669 -16513888 + (CGA)n Simple_repeat Simple_repeat 2 25 0 3 646 185 0 40 0 chr3L 8030524 8030549 -16513008 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 646 218 258 0 0 chr3L 8031705 8031767 -16511790 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 646 24 0 0 0 chr3L 8033163 8033187 -16510370 + AT_rich Low_complexity Low_complexity 1 24 0 3 646 230 116 23 0 chr3L 8033971 8034014 -16509543 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 646 321 89 0 0 chr3L 8034693 8034738 -16508819 + (CAA)n Simple_repeat Simple_repeat 3 47 0 3 646 209 217 0 0 chr3L 8037222 8037268 -16506289 + A-rich Low_complexity Low_complexity 1 46 0 3 646 27 49 0 0 chr3L 8038076 8038117 -16505440 + AT_rich Low_complexity Low_complexity 1 41 0 3 646 216 97 0 0 chr3L 8041188 8041219 -16502338 + (CTA)n Simple_repeat Simple_repeat 3 33 0 3 646 200 59 0 29 chr3L 8042077 8042112 -16501445 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 646 25 51 0 0 chr3L 8043707 8043746 -16499811 + AT_rich Low_complexity Low_complexity 1 39 0 3 646 32 26 0 0 chr3L 8044104 8044143 -16499414 + AT_rich Low_complexity Low_complexity 1 39 0 3 646 239 224 0 0 chr3L 8050669 8050718 -16492839 + GA-rich Low_complexity Low_complexity 1 49 0 3 646 24 32 0 0 chr3L 8055490 8055521 -16488036 + AT_rich Low_complexity Low_complexity 1 31 0 3 646 275 26 51 0 chr3L 8055978 8056017 -16487540 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 3 646 23 33 0 0 chr3L 8056246 8056276 -16487281 + AT_rich Low_complexity Low_complexity 1 30 0 3 646 210 250 0 0 chr3L 8057280 8057324 -16486233 + (CAA)n Simple_repeat Simple_repeat 2 45 0 3 646 28 48 0 0 chr3L 8057841 8057883 -16485674 + AT_rich Low_complexity Low_complexity 1 42 0 3 646 218 167 18 18 chr3L 8059012 8059067 -16484490 + (TTAA)n Simple_repeat Simple_repeat 2 56 0 3 646 23 101 0 0 chr3L 8062428 8062507 -16481050 + AT_rich Low_complexity Low_complexity 1 79 0 3 646 189 0 0 0 chr3L 8063746 8063767 -16479790 + (TTAA)n Simple_repeat Simple_repeat 4 24 0 3 646 200 180 0 39 chr3L 8070719 8070771 -16472786 + A-rich Low_complexity Low_complexity 4 53 0 3 646 24 67 0 0 chr3L 8071800 8071845 -16471712 + AT_rich Low_complexity Low_complexity 1 45 0 3 646 204 179 0 0 chr3L 8074079 8074118 -16469439 + (CGGA)n Simple_repeat Simple_repeat 3 41 0 3 646 23 33 0 0 chr3L 8075431 8075461 -16468096 + AT_rich Low_complexity Low_complexity 1 30 0 3 646 34 24 0 0 chr3L 8076411 8076452 -16467105 + AT_rich Low_complexity Low_complexity 1 41 0 3 646 28 48 0 0 chr3L 8085143 8085185 -16458372 + AT_rich Low_complexity Low_complexity 1 42 0 3 646 23 0 0 0 chr3L 8088681 8088704 -16454853 + AT_rich Low_complexity Low_complexity 1 23 0 3 646 32 0 0 0 chr3L 8089316 8089348 -16454209 + AT_rich Low_complexity Low_complexity 1 32 0 3 646 23 68 0 0 chr3L 8090872 8090916 -16452641 + AT_rich Low_complexity Low_complexity 1 44 0 3 646 198 0 0 0 chr3L 8095484 8095506 -16448051 + (CCA)n Simple_repeat Simple_repeat 3 24 0 3 646 265 233 9 28 chr3L 8095506 8095612 -16447945 + (CAA)n Simple_repeat Simple_repeat 2 105 0 3 646 21 36 0 0 chr3L 8100791 8100819 -16442738 + AT_rich Low_complexity Low_complexity 1 28 0 3 646 23 0 0 0 chr3L 8101051 8101074 -16442483 + AT_rich Low_complexity Low_complexity 1 23 0 3 646 201 213 0 21 chr3L 8109898 8109946 -16433611 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 646 206 121 0 0 chr3L 8112969 8113002 -16430555 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 646 204 97 0 0 chr3L 8113532 8113563 -16429994 + (GGA)n Simple_repeat Simple_repeat 3 33 0 3 646 207 0 0 0 chr3L 8114439 8114462 -16429095 + (CGAAA)n Simple_repeat Simple_repeat 3 25 0 3 646 27 29 0 0 chr3L 8114639 8114673 -16428884 + AT_rich Low_complexity Low_complexity 1 34 0 3 646 26 0 0 0 chr3L 8114761 8114787 -16428770 + AT_rich Low_complexity Low_complexity 1 26 0 3 646 31 68 0 0 chr3L 8118286 8118345 -16425212 + AT_rich Low_complexity Low_complexity 1 59 0 3 646 23 0 0 0 chr3L 8120989 8121012 -16422545 + AT_rich Low_complexity Low_complexity 1 23 0 3 647 22 99 0 0 chr3L 8137914 8137985 -16405572 + AT_rich Low_complexity Low_complexity 1 71 0 3 647 21 0 0 0 chr3L 8147229 8147250 -16396307 + AT_rich Low_complexity Low_complexity 1 21 0 3 647 206 163 23 0 chr3L 8147835 8147878 -16395679 + T-rich Low_complexity Low_complexity 5 48 0 3 647 194 174 0 21 chr3L 8151144 8151191 -16392366 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 647 26 0 0 0 chr3L 8152180 8152206 -16391351 + AT_rich Low_complexity Low_complexity 1 26 0 3 647 21 0 0 0 chr3L 8152785 8152806 -16390751 + AT_rich Low_complexity Low_complexity 1 21 0 3 647 33 66 0 0 chr3L 8153065 8153126 -16390431 + AT_rich Low_complexity Low_complexity 1 61 0 3 647 231 189 0 0 chr3L 8153942 8153995 -16389562 + (CTG)n Simple_repeat Simple_repeat 1 53 0 3 647 252 152 68 110 chr3L 8154078 8154196 -16389361 - ROO_I LTR Pao -7524 732 620 3 647 198 233 0 0 chr3L 8156856 8156916 -16386641 + (CTG)n Simple_repeat Simple_repeat 3 62 0 3 647 202 151 39 64 chr3L 8157395 8157473 -16386084 + (CTG)n Simple_repeat Simple_repeat 2 77 0 3 647 22 56 0 0 chr3L 8158040 8158076 -16385481 + AT_rich Low_complexity Low_complexity 1 36 0 3 647 33 25 0 0 chr3L 8159184 8159224 -16384333 + AT_rich Low_complexity Low_complexity 1 40 0 3 647 29 28 0 0 chr3L 8183953 8183989 -16359568 + AT_rich Low_complexity Low_complexity 1 36 0 3 647 24 0 0 0 chr3L 8184216 8184240 -16359317 + AT_rich Low_complexity Low_complexity 1 24 0 3 647 50 0 0 0 chr3L 8191135 8191185 -16352372 + AT_rich Low_complexity Low_complexity 1 50 0 3 647 27 0 0 0 chr3L 8194210 8194237 -16349320 + AT_rich Low_complexity Low_complexity 1 27 0 3 647 24 32 0 0 chr3L 8195453 8195484 -16348073 + AT_rich Low_complexity Low_complexity 1 31 0 3 647 256 339 0 0 chr3L 8196199 8196311 -16347246 + (CCG)n Simple_repeat Simple_repeat 2 113 0 3 647 204 125 0 0 chr3L 8198185 8198217 -16345340 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 647 27 29 0 0 chr3L 8198804 8198838 -16344719 + AT_rich Low_complexity Low_complexity 1 34 0 3 647 35 41 0 0 chr3L 8200123 8200172 -16343385 + AT_rich Low_complexity Low_complexity 1 49 0 3 647 26 0 0 0 chr3L 8202352 8202378 -16341179 + AT_rich Low_complexity Low_complexity 1 26 0 3 647 198 0 0 0 chr3L 8208559 8208581 -16334976 + (CAGC)n Simple_repeat Simple_repeat 2 23 0 3 647 26 0 0 0 chr3L 8210789 8210815 -16332742 + AT_rich Low_complexity Low_complexity 1 26 0 3 647 334 333 0 0 chr3L 8211559 8211697 -16331860 + (CGG)n Simple_repeat Simple_repeat 2 139 0 3 647 195 170 0 0 chr3L 8212219 8212266 -16331291 + (CAATC)n Simple_repeat Simple_repeat 5 51 0 3 647 38 61 0 0 chr3L 8213291 8213357 -16330200 + AT_rich Low_complexity Low_complexity 1 66 0 3 647 24 67 0 0 chr3L 8214316 8214361 -16329196 + AT_rich Low_complexity Low_complexity 1 45 0 3 647 206 176 0 56 chr3L 8215041 8215095 -16328462 + A-rich Low_complexity Low_complexity 6 56 0 3 647 183 80 0 0 chr3L 8216754 8216779 -16326778 + (CAGTT)n Simple_repeat Simple_repeat 1 25 0 3 647 23 54 0 0 chr3L 8217890 8217927 -16325630 + AT_rich Low_complexity Low_complexity 1 37 0 3 647 49 66 0 0 chr3L 8219760 8219851 -16323706 + AT_rich Low_complexity Low_complexity 1 91 0 3 647 28 29 0 0 chr3L 8219907 8219942 -16323615 + AT_rich Low_complexity Low_complexity 1 35 0 3 647 198 118 0 0 chr3L 8220459 8220493 -16323064 + (A)n Simple_repeat Simple_repeat 1 34 0 3 647 21 0 0 0 chr3L 8221076 8221097 -16322460 + AT_rich Low_complexity Low_complexity 1 21 0 3 647 22 0 0 0 chr3L 8222190 8222212 -16321345 + AT_rich Low_complexity Low_complexity 1 22 0 3 647 215 31 0 30 chr3L 8222872 8222905 -16320652 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 647 43 0 0 0 chr3L 8224857 8224900 -16318657 + AT_rich Low_complexity Low_complexity 1 43 0 3 647 24 53 0 0 chr3L 8225770 8225808 -16317749 + AT_rich Low_complexity Low_complexity 1 38 0 3 647 47962 3 0 0 chr3L 8226715 8231898 -16311659 - DMRT1A LINE R1 0 5183 1 3 647 212 59 0 29 chr3L 8231917 8231952 -16311605 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 647 32 0 0 0 chr3L 8233788 8233820 -16309737 + AT_rich Low_complexity Low_complexity 1 32 0 3 647 189 74 0 0 chr3L 8234375 8234402 -16309155 + (A)n Simple_repeat Simple_repeat 1 27 0 3 647 33 43 0 0 chr3L 8235118 8235165 -16308392 + AT_rich Low_complexity Low_complexity 1 47 0 3 647 22 0 0 0 chr3L 8235184 8235206 -16308351 + AT_rich Low_complexity Low_complexity 1 22 0 3 647 50 0 0 0 chr3L 8235277 8235327 -16308230 + AT_rich Low_complexity Low_complexity 1 50 0 3 647 207 231 58 0 chr3L 8236155 8236207 -16307350 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 3 647 240 149 0 0 chr3L 8236489 8236536 -16307021 + (TC)n Simple_repeat Simple_repeat 1 47 0 3 647 219 139 0 0 chr3L 8237957 8237993 -16305564 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 647 229 321 12 18 chr3L 8238062 8238227 -16305330 + (TTTG)n Simple_repeat Simple_repeat 1 164 0 3 647 48 0 0 0 chr3L 8241140 8241188 -16302369 + AT_rich Low_complexity Low_complexity 1 48 0 3 647 186 171 0 0 chr3L 8241755 8241796 -16301761 + (CAA)n Simple_repeat Simple_repeat 2 42 0 3 647 451 122 50 109 chr3L 8242259 8242360 -16301197 - Transib-N1_DM DNA Transib -399 115 21 3 647 189 196 0 0 chr3L 8242743 8242794 -16300763 + (CAG)n Simple_repeat Simple_repeat 2 52 0 3 647 343 157 12 24 chr3L 8243874 8243959 -16299598 + ROO_I LTR Pao 632 715 -7541 3 647 192 97 0 0 chr3L 8244011 8244042 -16299515 + (CAG)n Simple_repeat Simple_repeat 1 31 0 3 647 254 29 0 28 chr3L 8245125 8245161 -16298396 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 647 21 0 0 0 chr3L 8247106 8247127 -16296430 + AT_rich Low_complexity Low_complexity 1 21 0 3 647 22 0 0 0 chr3L 8247911 8247933 -16295624 + AT_rich Low_complexity Low_complexity 1 22 0 3 647 21 0 0 0 chr3L 8248726 8248747 -16294810 + AT_rich Low_complexity Low_complexity 1 21 0 3 647 24 0 0 0 chr3L 8249282 8249306 -16294251 + AT_rich Low_complexity Low_complexity 1 24 0 3 647 186 143 0 0 chr3L 8252126 8252161 -16291396 + (CAA)n Simple_repeat Simple_repeat 1 35 0 3 647 25 0 0 0 chr3L 8252637 8252662 -16290895 + AT_rich Low_complexity Low_complexity 1 25 0 3 647 219 254 16 0 chr3L 8255743 8255806 -16287751 + A-rich Low_complexity Low_complexity 2 65 0 3 647 22 0 0 0 chr3L 8255857 8255879 -16287678 + AT_rich Low_complexity Low_complexity 1 22 0 3 648 216 67 0 0 chr3L 8260256 8260286 -16283271 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 648 189 0 0 0 chr3L 8261903 8261924 -16281633 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 648 23 54 0 0 chr3L 8263354 8263391 -16280166 + AT_rich Low_complexity Low_complexity 1 37 0 3 648 21 0 0 0 chr3L 8263728 8263749 -16279808 + AT_rich Low_complexity Low_complexity 1 21 0 3 648 25 0 0 0 chr3L 8263994 8264019 -16279538 + AT_rich Low_complexity Low_complexity 1 25 0 3 648 21 0 0 0 chr3L 8264370 8264391 -16279166 + AT_rich Low_complexity Low_complexity 1 21 0 3 648 222 37 0 0 chr3L 8265024 8265051 -16278506 + (TCC)n Simple_repeat Simple_repeat 3 29 0 3 648 180 0 0 0 chr3L 8267218 8267238 -16276319 + (CA)n Simple_repeat Simple_repeat 2 21 0 3 648 214 213 0 21 chr3L 8267325 8267373 -16276184 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 648 207 0 0 0 chr3L 8268516 8268539 -16275018 + (CAT)n Simple_repeat Simple_repeat 2 24 0 3 648 28 79 0 0 chr3L 8268915 8268978 -16274579 + AT_rich Low_complexity Low_complexity 1 63 0 3 648 210 37 0 0 chr3L 8270765 8270792 -16272765 + (CCCTG)n Simple_repeat Simple_repeat 3 29 0 3 648 35 0 0 0 chr3L 8272339 8272374 -16271183 + AT_rich Low_complexity Low_complexity 1 35 0 3 648 25 31 0 0 chr3L 8272960 8272992 -16270565 + AT_rich Low_complexity Low_complexity 1 32 0 3 648 30 27 0 0 chr3L 8274794 8274831 -16268726 + AT_rich Low_complexity Low_complexity 1 37 0 3 648 23 68 0 0 chr3L 8280551 8280595 -16262962 + AT_rich Low_complexity Low_complexity 1 44 0 3 648 22 0 0 0 chr3L 8281620 8281642 -16261915 + AT_rich Low_complexity Low_complexity 1 22 0 3 648 30 0 0 0 chr3L 8283543 8283573 -16259984 + AT_rich Low_complexity Low_complexity 1 30 0 3 648 206 281 0 0 chr3L 8287458 8287522 -16256035 + (CAGAGA)n Simple_repeat Simple_repeat 3 66 0 3 648 21 36 0 0 chr3L 8289842 8289870 -16253687 + AT_rich Low_complexity Low_complexity 1 28 0 3 648 25 90 0 0 chr3L 8293042 8293109 -16250448 + AT_rich Low_complexity Low_complexity 1 67 0 3 648 22 70 0 0 chr3L 8307964 8308007 -16235550 + AT_rich Low_complexity Low_complexity 1 43 0 3 648 228 210 0 0 chr3L 8310685 8310766 -16232791 + A-rich Low_complexity Low_complexity 1 81 0 3 648 22 0 0 0 chr3L 8313115 8313137 -16230420 + AT_rich Low_complexity Low_complexity 1 22 0 3 648 35 24 0 0 chr3L 8314829 8314871 -16228686 + AT_rich Low_complexity Low_complexity 1 42 0 3 648 282 302 0 0 chr3L 8315077 8315196 -16228361 + GA-rich Low_complexity Low_complexity 1 119 0 3 648 22 70 0 0 chr3L 8315309 8315352 -16228205 + AT_rich Low_complexity Low_complexity 1 43 0 3 648 213 139 0 0 chr3L 8318804 8318847 -16224710 + (CCA)n Simple_repeat Simple_repeat 2 44 0 3 648 287 91 36 0 chr3L 8320196 8320251 -16223306 + (CAAA)n Simple_repeat Simple_repeat 3 59 0 3 648 280 253 0 11 chr3L 8320984 8321076 -16222481 + CT-rich Low_complexity Low_complexity 1 91 0 3 648 34 55 0 0 chr3L 8321407 8321462 -16222095 + AT_rich Low_complexity Low_complexity 1 55 0 3 648 23 0 0 0 chr3L 8321521 8321544 -16222013 + AT_rich Low_complexity Low_complexity 1 23 0 3 648 29 0 0 0 chr3L 8321695 8321724 -16221833 + AT_rich Low_complexity Low_complexity 1 29 0 3 648 22 94 0 0 chr3L 8323311 8323375 -16220182 + AT_rich Low_complexity Low_complexity 1 64 0 3 648 342 138 0 0 chr3L 8325199 8325257 -16218300 + (GA)n Simple_repeat Simple_repeat 1 58 0 3 648 207 0 0 0 chr3L 8325366 8325389 -16218168 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 648 218 125 0 24 chr3L 8326841 8326882 -16216675 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 3 648 36 0 0 0 chr3L 8339416 8339452 -16204105 + AT_rich Low_complexity Low_complexity 1 36 0 3 648 185 119 0 23 chr3L 8355753 8355796 -16187761 + (CAAAAA)n Simple_repeat Simple_repeat 3 44 0 3 648 225 196 0 0 chr3L 8355885 8355931 -16187626 + (CAGT)n Simple_repeat Simple_repeat 3 48 0 3 648 23 54 0 0 chr3L 8356096 8356133 -16187424 + AT_rich Low_complexity Low_complexity 1 37 0 3 648 198 103 0 0 chr3L 8357326 8357355 -16186202 + (GCTG)n Simple_repeat Simple_repeat 2 30 0 3 648 21 0 0 0 chr3L 8358150 8358171 -16185386 + AT_rich Low_complexity Low_complexity 1 21 0 3 648 234 0 0 0 chr3L 8359728 8359754 -16183803 + (CAT)n Simple_repeat Simple_repeat 2 27 0 3 648 21 0 0 0 chr3L 8362324 8362345 -16181212 + AT_rich Low_complexity Low_complexity 1 21 0 3 648 25 31 0 0 chr3L 8362595 8362627 -16180930 + AT_rich Low_complexity Low_complexity 1 32 0 3 648 393 86 0 0 chr3L 8363043 8363101 -16180456 + (CTG)n Simple_repeat Simple_repeat 2 59 0 3 648 26 0 0 0 chr3L 8364358 8364384 -16179173 + AT_rich Low_complexity Low_complexity 1 26 0 3 648 459 117 32 0 chr3L 8365169 8365263 -16178294 + (CAG)n Simple_repeat Simple_repeat 2 98 0 3 648 328 128 39 0 chr3L 8365368 8365446 -16178111 - ROO_I LTR Pao -7530 726 646 3 648 222 91 0 0 chr3L 8365743 8365776 -16177781 + (TAA)n Simple_repeat Simple_repeat 2 34 0 3 648 330 134 0 0 chr3L 8365873 8365940 -16177617 + (CCAA)n Simple_repeat Simple_repeat 2 68 0 3 648 208 163 0 23 chr3L 8366083 8366127 -16177430 + (CCGAA)n Simple_repeat Simple_repeat 2 44 0 3 648 207 0 0 0 chr3L 8366397 8366420 -16177137 + (CATCG)n Simple_repeat Simple_repeat 1 23 0 3 648 22 56 0 0 chr3L 8367687 8367723 -16175834 + AT_rich Low_complexity Low_complexity 1 36 0 3 648 186 143 0 0 chr3L 8368193 8368228 -16175329 + (A)n Simple_repeat Simple_repeat 1 35 0 3 648 216 200 0 0 chr3L 8371227 8371272 -16172285 + T-rich Low_complexity Low_complexity 1 45 0 3 648 189 121 0 0 chr3L 8372501 8372534 -16171023 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 648 204 158 0 0 chr3L 8373316 8373354 -16170203 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 648 201 74 0 0 chr3L 8375664 8375691 -16167866 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 648 217 250 0 0 chr3L 8376285 8376341 -16167216 + A-rich Low_complexity Low_complexity 1 56 0 3 648 344 282 0 0 chr3L 8379043 8379174 -16164383 + (CAA)n Simple_repeat Simple_repeat 3 133 0 3 648 258 132 0 0 chr3L 8379419 8379472 -16164085 + (CAG)n Simple_repeat Simple_repeat 2 54 0 3 648 33 43 0 0 chr3L 8383314 8383361 -16160196 + AT_rich Low_complexity Low_complexity 1 47 0 3 648 30 0 0 0 chr3L 8383599 8383629 -16159928 + AT_rich Low_complexity Low_complexity 1 30 0 3 648 25 0 0 0 chr3L 8383924 8383949 -16159608 + AT_rich Low_complexity Low_complexity 1 25 0 3 648 207 114 29 0 chr3L 8383972 8384007 -16159550 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 3 648 33 25 0 0 chr3L 8384220 8384260 -16159297 + AT_rich Low_complexity Low_complexity 1 40 0 3 648 22 35 0 0 chr3L 8385529 8385558 -16157999 + AT_rich Low_complexity Low_complexity 1 29 0 3 648 23 68 0 0 chr3L 8387221 8387265 -16156292 + AT_rich Low_complexity Low_complexity 1 44 0 3 648 40 21 0 0 chr3L 8387644 8387691 -16155866 + AT_rich Low_complexity Low_complexity 1 47 0 3 648 191 36 36 0 chr3L 8387956 8387984 -16155573 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 648 396 149 0 0 chr3L 8388421 8388488 -16155069 + DNAREP1_DM LINE Penelope 345 411 -183 3 649 44 0 0 0 chr3L 8390227 8390271 -16153286 + AT_rich Low_complexity Low_complexity 1 44 0 3 649 1341 23 111 6 chr3L 8390299 8390471 -16153086 + TC1-2_DM DNA Tc1 689 878 -766 3 649 1688 47 169 8 chr3L 8390467 8390827 -16152730 + TC1-2_DM DNA Tc1 1227 1644 0 3 649 24 32 0 0 chr3L 8390879 8390910 -16152647 + AT_rich Low_complexity Low_complexity 1 31 0 3 649 339 98 20 0 chr3L 8392247 8392298 -16151259 - DNAREP1_DM LINE Penelope -9 585 534 3 649 29 0 0 0 chr3L 8404152 8404181 -16139376 + AT_rich Low_complexity Low_complexity 1 29 0 3 649 219 36 0 0 chr3L 8406421 8406449 -16137108 + (CAG)n Simple_repeat Simple_repeat 2 29 0 3 649 183 100 0 0 chr3L 8411701 8411731 -16131826 + (T)n Simple_repeat Simple_repeat 1 30 0 3 649 225 178 0 0 chr3L 8412568 8412613 -16130944 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 649 180 176 0 0 chr3L 8412736 8412770 -16130787 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 649 189 0 0 0 chr3L 8415087 8415108 -16128449 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 3 649 29 47 0 0 chr3L 8415496 8415539 -16128018 + AT_rich Low_complexity Low_complexity 1 43 0 3 649 204 67 0 0 chr3L 8415922 8415952 -16127605 + (ATTCG)n Simple_repeat Simple_repeat 4 33 0 3 649 22 35 0 0 chr3L 8416336 8416365 -16127192 + AT_rich Low_complexity Low_complexity 1 29 0 3 649 255 31 0 0 chr3L 8416853 8416885 -16126672 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 3 649 21 0 0 0 chr3L 8417041 8417062 -16126495 + AT_rich Low_complexity Low_complexity 1 21 0 3 649 33 25 0 0 chr3L 8417892 8417932 -16125625 + AT_rich Low_complexity Low_complexity 1 40 0 3 649 315 150 0 0 chr3L 8418281 8418341 -16125216 + (CAA)n Simple_repeat Simple_repeat 1 60 0 3 649 189 0 0 0 chr3L 8420932 8420953 -16122604 + (GTTTG)n Simple_repeat Simple_repeat 1 21 0 3 649 22 0 0 0 chr3L 8421586 8421608 -16121949 + AT_rich Low_complexity Low_complexity 1 22 0 3 649 251 167 16 16 chr3L 8421720 8421781 -16121776 + A-rich Low_complexity Low_complexity 2 62 0 3 649 180 111 0 0 chr3L 8423173 8423200 -16120357 + (CGG)n Simple_repeat Simple_repeat 1 27 0 3 649 207 204 0 0 chr3L 8424302 8424346 -16119211 + A-rich Low_complexity Low_complexity 1 44 0 3 649 213 231 0 0 chr3L 8424534 8424586 -16118971 + (TAAA)n Simple_repeat Simple_repeat 3 54 0 3 649 25 0 0 0 chr3L 8424948 8424973 -16118584 + AT_rich Low_complexity Low_complexity 1 25 0 3 649 185 108 27 0 chr3L 8426278 8426315 -16117242 + (TTTG)n Simple_repeat Simple_repeat 4 41 0 3 649 25 0 0 0 chr3L 8426341 8426366 -16117191 + AT_rich Low_complexity Low_complexity 1 25 0 3 649 183 129 0 0 chr3L 8428750 8428781 -16114776 + (CTG)n Simple_repeat Simple_repeat 3 33 0 3 649 401 178 0 0 chr3L 8430816 8430917 -16112640 - ROO_I LTR Pao -7513 743 643 3 649 302 143 0 38 chr3L 8430920 8431000 -16112557 - ROO_I LTR Pao -7539 717 641 3 649 219 150 0 0 chr3L 8431571 8431611 -16111946 + (T)n Simple_repeat Simple_repeat 1 40 0 3 649 220 164 18 18 chr3L 8431828 8431884 -16111673 + (TTTG)n Simple_repeat Simple_repeat 4 59 0 3 649 21 57 0 0 chr3L 8432733 8432768 -16110789 + AT_rich Low_complexity Low_complexity 1 35 0 3 649 26 30 0 0 chr3L 8432903 8432936 -16110621 + AT_rich Low_complexity Low_complexity 1 33 0 3 649 24 32 0 0 chr3L 8433166 8433197 -16110360 + AT_rich Low_complexity Low_complexity 1 31 0 3 649 22 70 0 0 chr3L 8433454 8433497 -16110060 + AT_rich Low_complexity Low_complexity 1 43 0 3 649 233 224 0 0 chr3L 8434256 8434314 -16109243 + T-rich Low_complexity Low_complexity 1 58 0 3 649 218 208 26 62 chr3L 8434339 8434452 -16109105 + T-rich Low_complexity Low_complexity 3 111 0 3 649 228 269 8 30 chr3L 8434636 8434770 -16108787 + T-rich Low_complexity Low_complexity 2 132 0 3 649 225 229 16 16 chr3L 8434988 8435050 -16108507 + (CA)n Simple_repeat Simple_repeat 1 62 0 3 649 25 31 0 0 chr3L 8438360 8438392 -16105165 + AT_rich Low_complexity Low_complexity 1 32 0 3 649 25 51 0 0 chr3L 8441183 8441222 -16102335 + AT_rich Low_complexity Low_complexity 1 39 0 3 649 21 0 0 0 chr3L 8442612 8442633 -16100924 + AT_rich Low_complexity Low_complexity 1 21 0 3 649 25 51 0 0 chr3L 8442805 8442844 -16100713 + AT_rich Low_complexity Low_complexity 1 39 0 3 649 331 238 0 19 chr3L 8443266 8443369 -16100188 + (TG)n Simple_repeat Simple_repeat 1 101 0 3 649 303 237 0 31 chr3L 8443447 8443543 -16100014 + (CAA)n Simple_repeat Simple_repeat 1 93 0 3 649 219 330 11 0 chr3L 8443884 8443978 -16099579 + (CAG)n Simple_repeat Simple_repeat 3 97 0 3 649 216 97 0 0 chr3L 8443998 8444029 -16099528 + (TTG)n Simple_repeat Simple_repeat 3 33 0 3 649 278 185 12 0 chr3L 8444935 8445016 -16098541 + (CAA)n Simple_repeat Simple_repeat 1 82 0 3 649 219 114 0 0 chr3L 8445065 8445100 -16098457 + (CAT)n Simple_repeat Simple_repeat 1 35 0 3 649 204 40 0 0 chr3L 8448154 8448179 -16095378 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 649 201 74 0 0 chr3L 8448179 8448206 -16095351 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 649 274 281 0 0 chr3L 8448438 8448495 -16095062 + (TTCGGG)n Simple_repeat Simple_repeat 6 62 0 3 649 267 191 0 0 chr3L 8448970 8449033 -16094524 + (ATG)n Simple_repeat Simple_repeat 1 63 0 3 649 192 40 0 0 chr3L 8449206 8449231 -16094326 + (GGA)n Simple_repeat Simple_repeat 1 25 0 3 649 543 31 0 0 chr3L 8449602 8449667 -16093890 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 649 180 152 0 0 chr3L 8449795 8449828 -16093729 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 649 207 0 0 0 chr3L 8451870 8451893 -16091664 + (TGAG)n Simple_repeat Simple_repeat 2 24 0 3 649 216 0 0 0 chr3L 8452060 8452084 -16091473 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 649 379 155 0 23 chr3L 8452946 8453032 -16090525 + (GTATG)n Simple_repeat Simple_repeat 4 87 0 3 649 180 0 0 0 chr3L 8453559 8453579 -16089978 + (CGAAT)n Simple_repeat Simple_repeat 1 20 0 3 649 279 157 0 0 chr3L 8454026 8454077 -16089480 + (TCCG)n Simple_repeat Simple_repeat 4 54 0 3 649 24 0 0 0 chr3L 8454331 8454355 -16089202 + AT_rich Low_complexity Low_complexity 1 24 0 3 649 221 222 0 0 chr3L 8456751 8456796 -16086761 + (CGG)n Simple_repeat Simple_repeat 3 47 0 3 649 204 214 24 0 chr3L 8456929 8456971 -16086586 + (CAG)n Simple_repeat Simple_repeat 2 44 0 3 649 243 226 0 0 chr3L 8457788 8457841 -16085716 + (CAG)n Simple_repeat Simple_repeat 3 55 0 3 649 201 147 0 0 chr3L 8459469 8459503 -16084054 + (CAG)n Simple_repeat Simple_repeat 1 34 0 3 649 249 262 16 16 chr3L 8460756 8460880 -16082677 + (CAG)n Simple_repeat Simple_repeat 1 124 0 3 649 22 35 0 0 chr3L 8461408 8461437 -16082120 + AT_rich Low_complexity Low_complexity 1 29 0 3 649 275 122 0 20 chr3L 8461640 8461690 -16081867 + (CAG)n Simple_repeat Simple_repeat 1 49 0 3 649 186 43 0 0 chr3L 8469955 8469978 -16073579 + (TCC)n Simple_repeat Simple_repeat 2 24 0 3 649 4017 0 0 0 chr3L 8474927 8475355 -16068202 - ROO_LTR LTR Pao 0 428 1 3 649 74783 1 1 0 chr3L 8475355 8483600 -16059957 - ROO_I LTR Pao 0 8256 1 3 649 4017 0 0 0 chr3L 8483600 8484028 -16059529 - ROO_LTR LTR Pao 0 428 1 3 649 183 114 0 0 chr3L 8484193 8484228 -16059329 + (A)n Simple_repeat Simple_repeat 1 35 0 3 649 22 0 0 0 chr3L 8484609 8484631 -16058926 + AT_rich Low_complexity Low_complexity 1 22 0 3 649 189 180 0 0 chr3L 8489305 8489355 -16054202 + (CCA)n Simple_repeat Simple_repeat 2 51 0 3 649 26 0 0 0 chr3L 8490212 8490238 -16053319 + AT_rich Low_complexity Low_complexity 1 26 0 3 649 3749 2 0 0 chr3L 8491451 8491850 -16051707 - BLOOD_LTR LTR Gypsy 0 399 1 3 649 60308 0 0 0 chr3L 8491850 8498462 -16045095 - BLOOD_I LTR Gypsy 0 6613 1 3 649 3749 2 0 0 chr3L 8498462 8498861 -16044696 - BLOOD_LTR LTR Gypsy 0 399 1 3 649 24 53 0 0 chr3L 8499066 8499104 -16044453 + AT_rich Low_complexity Low_complexity 1 38 0 3 649 221 75 25 0 chr3L 8499688 8499728 -16043829 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 649 21 57 0 0 chr3L 8502968 8503003 -16040554 + AT_rich Low_complexity Low_complexity 1 35 0 3 649 207 0 0 0 chr3L 8505799 8505822 -16037735 + (TC)n Simple_repeat Simple_repeat 1 23 0 3 649 32 67 0 32 chr3L 8518025 8518118 -16025439 + AT_rich Low_complexity Low_complexity 1 90 0 3 650 24 67 0 0 chr3L 8521329 8521374 -16022183 + AT_rich Low_complexity Low_complexity 1 45 0 3 650 29 0 0 0 chr3L 8521467 8521496 -16022061 + AT_rich Low_complexity Low_complexity 1 29 0 3 650 192 125 0 0 chr3L 8521754 8521786 -16021771 + (CATA)n Simple_repeat Simple_repeat 2 33 0 3 650 24 32 0 0 chr3L 8522129 8522160 -16021397 + AT_rich Low_complexity Low_complexity 1 31 0 3 650 192 40 0 0 chr3L 8522393 8522418 -16021139 + (CAG)n Simple_repeat Simple_repeat 1 25 0 3 650 23 0 0 0 chr3L 8523265 8523288 -16020269 + AT_rich Low_complexity Low_complexity 1 23 0 3 650 186 132 37 19 chr3L 8526737 8526791 -16016766 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 650 21 36 0 0 chr3L 8527957 8527985 -16015572 + AT_rich Low_complexity Low_complexity 1 28 0 3 650 23 0 0 0 chr3L 8530680 8530703 -16012854 + AT_rich Low_complexity Low_complexity 1 23 0 3 650 22 70 0 0 chr3L 8534510 8534553 -16009004 + AT_rich Low_complexity Low_complexity 1 43 0 3 650 28 29 0 0 chr3L 8537998 8538033 -16005524 + AT_rich Low_complexity Low_complexity 1 35 0 3 650 186 103 0 0 chr3L 8538535 8538564 -16004993 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 3 650 219 146 0 0 chr3L 8539839 8539880 -16003677 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 650 192 152 0 0 chr3L 8545086 8545119 -15998438 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 3 650 205 171 0 0 chr3L 8545138 8545173 -15998384 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 3 650 201 121 0 0 chr3L 8548930 8548963 -15994594 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 650 180 0 0 0 chr3L 8550206 8550226 -15993331 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 650 205 256 0 34 chr3L 8562966 8563055 -15980502 + (CCCA)n Simple_repeat Simple_repeat 1 86 0 3 650 24 0 0 0 chr3L 8563184 8563208 -15980349 + AT_rich Low_complexity Low_complexity 1 24 0 3 650 21 89 0 0 chr3L 8563807 8563863 -15979694 + AT_rich Low_complexity Low_complexity 1 56 0 3 650 26 64 0 0 chr3L 8567467 8567514 -15976043 + AT_rich Low_complexity Low_complexity 1 47 0 3 650 24 53 0 0 chr3L 8569276 8569314 -15974243 + AT_rich Low_complexity Low_complexity 1 38 0 3 650 21 36 0 0 chr3L 8569593 8569621 -15973936 + AT_rich Low_complexity Low_complexity 1 28 0 3 650 288 53 0 0 chr3L 8571918 8571956 -15971601 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 650 27 0 0 0 chr3L 8572147 8572174 -15971383 + AT_rich Low_complexity Low_complexity 1 27 0 3 650 225 94 0 0 chr3L 8574984 8575016 -15968541 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 650 183 42 0 0 chr3L 8576449 8576473 -15967084 + (GGA)n Simple_repeat Simple_repeat 2 25 0 3 650 28 71 0 0 chr3L 8576733 8576789 -15966768 + AT_rich Low_complexity Low_complexity 1 56 0 3 650 237 325 0 0 chr3L 8598241 8598321 -15945236 + (TG)n Simple_repeat Simple_repeat 2 81 0 3 650 198 71 0 0 chr3L 8599664 8599692 -15943865 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 650 218 146 20 20 chr3L 8602942 8602991 -15940566 + (CCCA)n Simple_repeat Simple_repeat 2 50 0 3 650 246 271 0 0 chr3L 8604138 8604208 -15939349 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 650 211 235 57 25 chr3L 8607263 8607385 -15936172 + (GCTG)n Simple_repeat Simple_repeat 1 126 0 3 650 30 27 0 0 chr3L 8619394 8619431 -15924126 + AT_rich Low_complexity Low_complexity 1 37 0 3 650 24 0 0 0 chr3L 8622265 8622289 -15921268 + AT_rich Low_complexity Low_complexity 1 24 0 3 650 25 51 0 0 chr3L 8623486 8623525 -15920032 + AT_rich Low_complexity Low_complexity 1 39 0 3 650 21 57 0 0 chr3L 8623924 8623959 -15919598 + AT_rich Low_complexity Low_complexity 1 35 0 3 650 216 236 14 14 chr3L 8628699 8628772 -15914785 + (TA)n Simple_repeat Simple_repeat 2 74 0 3 650 251 72 0 23 chr3L 8630177 8630220 -15913337 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3 650 21 57 0 0 chr3L 8630363 8630398 -15913159 + AT_rich Low_complexity Low_complexity 1 35 0 3 650 220 261 15 0 chr3L 8631458 8631523 -15912034 + (CAG)n Simple_repeat Simple_repeat 3 68 0 3 650 28 0 0 0 chr3L 8631738 8631766 -15911791 + AT_rich Low_complexity Low_complexity 1 28 0 3 650 238 193 0 34 chr3L 8632863 8632922 -15910635 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 3 650 222 91 0 0 chr3L 8633749 8633782 -15909775 + (CAG)n Simple_repeat Simple_repeat 1 33 0 3 650 21 36 0 0 chr3L 8635986 8636014 -15907543 + AT_rich Low_complexity Low_complexity 1 28 0 3 650 216 111 0 0 chr3L 8636449 8636485 -15907072 + (CAG)n Simple_repeat Simple_repeat 2 37 0 3 650 316 225 9 29 chr3L 8639056 8639161 -15904396 - ROO_I LTR Pao -7525 731 629 3 650 25 0 0 0 chr3L 8644844 8644869 -15898688 + AT_rich Low_complexity Low_complexity 1 25 0 3 650 277 60 80 0 chr3L 8644998 8645048 -15898509 + (TTATG)n Simple_repeat Simple_repeat 2 55 0 3 650 27 49 0 0 chr3L 8645290 8645331 -15898226 + AT_rich Low_complexity Low_complexity 1 41 0 3 650 231 103 0 0 chr3L 8645761 8645800 -15897757 + (GTATG)n Simple_repeat Simple_repeat 5 43 0 3 650 204 40 0 0 chr3L 8645990 8646015 -15897542 + (CGA)n Simple_repeat Simple_repeat 3 27 0 3 650 186 43 0 0 chr3L 8647796 8647819 -15895738 + (A)n Simple_repeat Simple_repeat 1 23 0 3 650 195 129 0 0 chr3L 8649753 8649784 -15893773 + (A)n Simple_repeat Simple_repeat 1 31 0 3 650 25 0 0 0 chr3L 8650332 8650357 -15893200 + AT_rich Low_complexity Low_complexity 1 25 0 3 651 22 35 0 0 chr3L 8653297 8653326 -15890231 + AT_rich Low_complexity Low_complexity 1 29 0 3 651 22 56 0 0 chr3L 8660149 8660185 -15883372 + AT_rich Low_complexity Low_complexity 1 36 0 3 651 23 54 0 0 chr3L 8662826 8662863 -15880694 + AT_rich Low_complexity Low_complexity 1 37 0 3 651 223 174 0 0 chr3L 8664061 8664107 -15879450 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 651 23 68 0 0 chr3L 8665112 8665156 -15878401 + AT_rich Low_complexity Low_complexity 1 44 0 3 651 238 125 68 27 chr3L 8666211 8666285 -15877272 + (TATAG)n Simple_repeat Simple_repeat 3 79 0 3 651 180 125 0 0 chr3L 8666896 8666928 -15876629 + (T)n Simple_repeat Simple_repeat 1 32 0 3 651 212 191 21 0 chr3L 8668195 8668242 -15875315 + (CCCA)n Simple_repeat Simple_repeat 2 49 0 3 651 186 43 0 0 chr3L 8668705 8668728 -15874829 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 651 210 71 0 0 chr3L 8668939 8668967 -15874590 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 651 210 143 0 0 chr3L 8670945 8670980 -15872577 + (CAG)n Simple_repeat Simple_repeat 2 36 0 3 651 261 255 9 9 chr3L 8671162 8671269 -15872288 + ROO_I LTR Pao 631 737 -7519 3 651 26 0 0 0 chr3L 8671831 8671857 -15871700 + AT_rich Low_complexity Low_complexity 1 26 0 3 651 264 77 0 0 chr3L 8674676 8674715 -15868842 + (CACGC)n Simple_repeat Simple_repeat 5 43 0 3 651 216 0 0 0 chr3L 8675258 8675282 -15868275 + (T)n Simple_repeat Simple_repeat 1 24 0 3 651 30 45 0 0 chr3L 8677468 8677512 -15866045 + AT_rich Low_complexity Low_complexity 1 44 0 3 651 23 33 0 0 chr3L 8681434 8681464 -15862093 + AT_rich Low_complexity Low_complexity 1 30 0 3 651 234 128 0 0 chr3L 8681893 8681932 -15861625 + (GGATG)n Simple_repeat Simple_repeat 2 40 0 3 651 201 74 0 0 chr3L 8682979 8683006 -15860551 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 3 651 25 31 0 0 chr3L 8683121 8683153 -15860404 + AT_rich Low_complexity Low_complexity 1 32 0 3 651 27 62 0 0 chr3L 8685344 8685392 -15858165 + AT_rich Low_complexity Low_complexity 1 48 0 3 651 183 42 0 0 chr3L 8686570 8686594 -15856963 + (T)n Simple_repeat Simple_repeat 1 24 0 3 651 23 54 0 0 chr3L 8687603 8687640 -15855917 + AT_rich Low_complexity Low_complexity 1 37 0 3 651 57 16 0 0 chr3L 8688042 8688106 -15855451 + AT_rich Low_complexity Low_complexity 1 64 0 3 651 23 68 0 0 chr3L 8689001 8689045 -15854512 + AT_rich Low_complexity Low_complexity 1 44 0 3 651 21 57 0 0 chr3L 8689473 8689508 -15854049 + AT_rich Low_complexity Low_complexity 1 35 0 3 651 222 156 22 0 chr3L 8689564 8689609 -15853948 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 651 234 179 0 0 chr3L 8691256 8691312 -15852245 + (CAGT)n Simple_repeat Simple_repeat 2 57 0 3 651 225 94 0 0 chr3L 8693131 8693163 -15850394 + (TATG)n Simple_repeat Simple_repeat 1 32 0 3 651 255 114 0 0 chr3L 8694610 8694654 -15848903 + (CATCC)n Simple_repeat Simple_repeat 1 44 0 3 651 22 35 0 0 chr3L 8694986 8695015 -15848542 + AT_rich Low_complexity Low_complexity 1 29 0 3 651 201 39 0 0 chr3L 8695289 8695315 -15848242 + (TTCGG)n Simple_repeat Simple_repeat 4 29 0 3 651 21 0 0 0 chr3L 8696249 8696270 -15847287 + AT_rich Low_complexity Low_complexity 1 21 0 3 651 200 170 0 41 chr3L 8697471 8697520 -15846037 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 3 651 25 31 0 0 chr3L 8699925 8699957 -15843600 + AT_rich Low_complexity Low_complexity 1 32 0 3 651 267 43 56 42 chr3L 8700837 8700909 -15842648 + (TATAA)n Simple_repeat Simple_repeat 5 77 0 3 651 30 0 0 0 chr3L 8700933 8700963 -15842594 + AT_rich Low_complexity Low_complexity 1 30 0 3 651 25 31 0 0 chr3L 8701013 8701045 -15842512 + AT_rich Low_complexity Low_complexity 1 32 0 3 651 239 309 0 0 chr3L 8702489 8702599 -15840958 + T-rich Low_complexity Low_complexity 1 110 0 3 651 37 69 0 0 chr3L 8703244 8703316 -15840241 + AT_rich Low_complexity Low_complexity 1 72 0 3 651 24 0 0 0 chr3L 8703810 8703834 -15839723 + AT_rich Low_complexity Low_complexity 1 24 0 3 651 180 0 0 0 chr3L 8705887 8705907 -15837650 + (GAATG)n Simple_repeat Simple_repeat 5 24 0 3 651 25 31 0 0 chr3L 8706242 8706274 -15837283 + AT_rich Low_complexity Low_complexity 1 32 0 3 651 21 0 0 0 chr3L 8707986 8708007 -15835550 + AT_rich Low_complexity Low_complexity 1 21 0 3 651 264 100 0 0 chr3L 8708869 8708909 -15834648 + (CAT)n Simple_repeat Simple_repeat 2 41 0 3 651 204 227 0 0 chr3L 8711256 8711300 -15832257 + (ATCG)n Simple_repeat Simple_repeat 3 46 0 3 651 27 29 0 0 chr3L 8711665 8711699 -15831858 + AT_rich Low_complexity Low_complexity 1 34 0 3 651 189 147 0 0 chr3L 8721910 8721944 -15821613 + (CCG)n Simple_repeat Simple_repeat 1 34 0 3 651 22 0 0 0 chr3L 8726586 8726608 -15816949 + AT_rich Low_complexity Low_complexity 1 22 0 3 651 234 91 0 0 chr3L 8731260 8731293 -15812264 + (CAT)n Simple_repeat Simple_repeat 1 33 0 3 651 23 54 0 0 chr3L 8737319 8737356 -15806201 + AT_rich Low_complexity Low_complexity 1 37 0 3 651 185 86 57 0 chr3L 8740728 8740763 -15802794 + (GAGTG)n Simple_repeat Simple_repeat 5 41 0 3 651 24 91 0 0 chr3L 8741973 8742039 -15801518 + AT_rich Low_complexity Low_complexity 1 66 0 3 651 23 0 0 0 chr3L 8745900 8745923 -15797634 + AT_rich Low_complexity Low_complexity 1 23 0 3 651 183 100 0 0 chr3L 8747242 8747272 -15796285 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 3 651 21 71 0 0 chr3L 8748907 8748949 -15794608 + AT_rich Low_complexity Low_complexity 1 42 0 3 651 246 193 0 0 chr3L 8753067 8753124 -15790433 + GA-rich Low_complexity Low_complexity 2 58 0 3 651 29 0 0 0 chr3L 8758789 8758818 -15784739 + AT_rich Low_complexity Low_complexity 1 29 0 3 651 234 155 0 65 chr3L 8764351 8764413 -15779144 + A-rich Low_complexity Low_complexity 4 61 0 3 651 216 191 0 0 chr3L 8766546 8766588 -15776969 + (CAGT)n Simple_repeat Simple_repeat 1 42 0 3 651 216 67 0 0 chr3L 8766789 8766819 -15776738 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 651 189 0 0 0 chr3L 8769692 8769713 -15773844 + (CAT)n Simple_repeat Simple_repeat 1 21 0 3 651 273 119 0 0 chr3L 8771922 8771964 -15771593 + (GCTTG)n Simple_repeat Simple_repeat 5 46 0 3 651 27 29 0 0 chr3L 8773121 8773155 -15770402 + AT_rich Low_complexity Low_complexity 1 34 0 3 651 22 70 0 0 chr3L 8776047 8776090 -15767467 + AT_rich Low_complexity Low_complexity 1 43 0 3 651 189 0 0 0 chr3L 8777686 8777707 -15765850 + (CGGT)n Simple_repeat Simple_repeat 3 23 0 3 651 22 80 0 0 chr3L 8779020 8779070 -15764487 + AT_rich Low_complexity Low_complexity 1 50 0 3 651 264 130 0 0 chr3L 8780303 8780349 -15763208 + (CCA)n Simple_repeat Simple_repeat 2 47 0 3 652 46935 1 4 0 chr3L 8784429 8789786 -15753771 + I_DM LINE I 99 5474 -757 3 652 24 32 0 0 chr3L 8790061 8790092 -15753465 + AT_rich Low_complexity Low_complexity 1 31 0 3 652 21 0 0 0 chr3L 8791195 8791216 -15752341 + AT_rich Low_complexity Low_complexity 1 21 0 3 652 29 0 0 0 chr3L 8802468 8802497 -15741060 + AT_rich Low_complexity Low_complexity 1 29 0 3 652 24 32 0 0 chr3L 8810246 8810277 -15733280 + AT_rich Low_complexity Low_complexity 1 31 0 3 652 231 217 0 0 chr3L 8810795 8810841 -15732716 + (CAGT)n Simple_repeat Simple_repeat 3 48 0 3 652 226 211 0 50 chr3L 8812506 8812566 -15730991 + (TTCGG)n Simple_repeat Simple_repeat 4 60 0 3 652 231 264 0 0 chr3L 8814762 8814815 -15728742 + (CAG)n Simple_repeat Simple_repeat 3 55 0 3 652 29 0 0 0 chr3L 8815375 8815404 -15728153 + AT_rich Low_complexity Low_complexity 1 29 0 3 652 216 269 0 15 chr3L 8817833 8817901 -15725656 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 652 26 30 0 0 chr3L 8818227 8818260 -15725297 + AT_rich Low_complexity Low_complexity 1 33 0 3 652 240 35 0 0 chr3L 8819012 8819041 -15724516 + (CAT)n Simple_repeat Simple_repeat 1 29 0 3 652 261 287 0 0 chr3L 8821073 8821160 -15722397 + (TG)n Simple_repeat Simple_repeat 2 88 0 3 652 209 77 109 55 chr3L 8825416 8825471 -15718086 + (CAGTT)n Simple_repeat Simple_repeat 3 60 0 3 652 228 35 0 0 chr3L 8827385 8827414 -15716143 + (TTTTTA)n Simple_repeat Simple_repeat 2 30 0 3 652 27 0 0 0 chr3L 8828624 8828651 -15714906 + AT_rich Low_complexity Low_complexity 1 27 0 3 652 23 33 0 0 chr3L 8831919 8831949 -15711608 + AT_rich Low_complexity Low_complexity 1 30 0 3 652 180 0 0 0 chr3L 8834709 8834729 -15708828 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 652 24 0 0 0 chr3L 8836877 8836901 -15706656 + AT_rich Low_complexity Low_complexity 1 24 0 3 652 230 256 0 16 chr3L 8840916 8841043 -15702514 + (TTG)n Simple_repeat Simple_repeat 3 127 0 3 652 231 157 0 56 chr3L 8842734 8842788 -15700769 + (CGGTG)n Simple_repeat Simple_repeat 2 52 0 3 652 221 241 0 0 chr3L 8843970 8844024 -15699533 + (CAGAGA)n Simple_repeat Simple_repeat 4 57 0 3 652 186 43 0 0 chr3L 8844868 8844891 -15698666 + (TTCGG)n Simple_repeat Simple_repeat 3 25 0 3 652 22 0 0 0 chr3L 8848016 8848038 -15695519 + AT_rich Low_complexity Low_complexity 1 22 0 3 652 37 39 0 0 chr3L 8848997 8849048 -15694509 + AT_rich Low_complexity Low_complexity 1 51 0 3 652 27 29 0 0 chr3L 8850318 8850352 -15693205 + AT_rich Low_complexity Low_complexity 1 34 0 3 652 189 0 0 0 chr3L 8850468 8850489 -15693068 + (CAGC)n Simple_repeat Simple_repeat 1 21 0 3 652 29 28 0 0 chr3L 8851752 8851788 -15691769 + AT_rich Low_complexity Low_complexity 1 36 0 3 652 180 0 0 0 chr3L 8852480 8852500 -15691057 + (CGAA)n Simple_repeat Simple_repeat 3 22 0 3 652 29 0 0 0 chr3L 8853994 8854023 -15689534 + AT_rich Low_complexity Low_complexity 1 29 0 3 652 180 179 0 0 chr3L 8857262 8857301 -15686256 + (CAG)n Simple_repeat Simple_repeat 3 41 0 3 652 180 179 0 0 chr3L 8858293 8858332 -15685225 + (TCTG)n Simple_repeat Simple_repeat 3 41 0 3 652 224 30 30 0 chr3L 8862360 8862393 -15681164 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 652 210 71 0 0 chr3L 8862753 8862781 -15680776 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 652 180 200 0 0 chr3L 8864418 8864468 -15679089 + A-rich Low_complexity Low_complexity 1 50 0 3 652 423 83 0 0 chr3L 8871040 8871100 -15672457 + (CTG)n Simple_repeat Simple_repeat 3 62 0 3 652 225 132 0 0 chr3L 8872765 8872803 -15670754 + (CAT)n Simple_repeat Simple_repeat 3 40 0 3 652 219 244 37 0 chr3L 8872899 8872981 -15670576 + T-rich Low_complexity Low_complexity 3 87 0 3 652 233 254 0 0 chr3L 8874753 8874816 -15668741 + (TGGA)n Simple_repeat Simple_repeat 1 63 0 3 652 24 32 0 0 chr3L 8875126 8875157 -15668400 + AT_rich Low_complexity Low_complexity 1 31 0 3 652 237 108 0 0 chr3L 8875715 8875752 -15667805 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 652 237 242 0 31 chr3L 8875874 8875938 -15667619 + (CCG)n Simple_repeat Simple_repeat 2 63 0 3 652 294 29 0 0 chr3L 8878452 8878487 -15665070 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 652 22 56 0 0 chr3L 8882539 8882575 -15660982 + AT_rich Low_complexity Low_complexity 1 36 0 3 652 231 88 0 0 chr3L 8883686 8883720 -15659837 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 652 23 54 0 0 chr3L 8893991 8894028 -15649529 + AT_rich Low_complexity Low_complexity 1 37 0 3 652 23 0 0 0 chr3L 8895839 8895862 -15647695 + AT_rich Low_complexity Low_complexity 1 23 0 3 652 22 35 0 0 chr3L 8896345 8896374 -15647183 + AT_rich Low_complexity Low_complexity 1 29 0 3 652 23 33 0 0 chr3L 8896410 8896440 -15647117 + AT_rich Low_complexity Low_complexity 1 30 0 3 652 24 0 0 0 chr3L 8899809 8899833 -15643724 + AT_rich Low_complexity Low_complexity 1 24 0 3 652 30 45 0 0 chr3L 8900375 8900419 -15643138 + AT_rich Low_complexity Low_complexity 1 44 0 3 652 221 231 0 0 chr3L 8901788 8901840 -15641717 + CT-rich Low_complexity Low_complexity 1 52 0 3 652 37 39 0 0 chr3L 8905338 8905389 -15638168 + AT_rich Low_complexity Low_complexity 1 51 0 3 652 21 57 0 0 chr3L 8905967 8906002 -15637555 + AT_rich Low_complexity Low_complexity 1 35 0 3 652 22 0 0 0 chr3L 8907512 8907534 -15636023 + AT_rich Low_complexity Low_complexity 1 22 0 3 652 200 222 0 0 chr3L 8911461 8911506 -15632051 + (AAATG)n Simple_repeat Simple_repeat 3 47 0 3 652 26 0 0 0 chr3L 8912507 8912533 -15631024 + AT_rich Low_complexity Low_complexity 1 26 0 3 653 218 211 18 0 chr3L 8912930 8912987 -15630570 + (CATATA)n Simple_repeat Simple_repeat 6 63 0 3 653 22 56 0 0 chr3L 8913096 8913132 -15630425 + AT_rich Low_complexity Low_complexity 1 36 0 3 653 22 35 0 0 chr3L 8915097 8915126 -15628431 + AT_rich Low_complexity Low_complexity 1 29 0 3 653 203 268 0 0 chr3L 8918185 8918226 -15625331 + (CATA)n Simple_repeat Simple_repeat 3 43 0 3 653 228 111 0 0 chr3L 8919529 8919565 -15623992 + (CAT)n Simple_repeat Simple_repeat 1 36 0 3 653 30 45 0 0 chr3L 8919747 8919791 -15623766 + AT_rich Low_complexity Low_complexity 1 44 0 3 653 21 57 0 0 chr3L 8923422 8923457 -15620100 + AT_rich Low_complexity Low_complexity 1 35 0 3 653 24 53 0 0 chr3L 8925353 8925391 -15618166 + AT_rich Low_complexity Low_complexity 1 38 0 3 653 23 33 0 0 chr3L 8927429 8927459 -15616098 + AT_rich Low_complexity Low_complexity 1 30 0 3 653 216 220 0 17 chr3L 8930114 8930174 -15613383 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 3 653 21 36 0 0 chr3L 8930806 8930834 -15612723 + AT_rich Low_complexity Low_complexity 1 28 0 3 653 24 0 0 0 chr3L 8930913 8930937 -15612620 + AT_rich Low_complexity Low_complexity 1 24 0 3 653 204 182 0 0 chr3L 8931141 8931185 -15612372 + (TA)n Simple_repeat Simple_repeat 1 44 0 3 653 25 83 0 0 chr3L 8932096 8932156 -15611401 + AT_rich Low_complexity Low_complexity 1 60 0 3 653 31 82 0 0 chr3L 8932833 8932906 -15610651 + AT_rich Low_complexity Low_complexity 1 73 0 3 653 180 77 0 0 chr3L 8933393 8933419 -15610138 + (T)n Simple_repeat Simple_repeat 1 26 0 3 653 219 215 31 0 chr3L 8934387 8934452 -15609105 + T-rich Low_complexity Low_complexity 5 71 0 3 653 283 188 35 0 chr3L 8937492 8937577 -15605980 - ROO_I LTR Pao -7534 722 635 3 653 189 0 0 0 chr3L 8938321 8938342 -15605215 + (TGG)n Simple_repeat Simple_repeat 1 21 0 3 653 186 133 0 0 chr3L 8938917 8938947 -15604610 + (CTG)n Simple_repeat Simple_repeat 3 32 0 3 653 224 220 0 0 chr3L 8939228 8939287 -15604270 + (ATG)n Simple_repeat Simple_repeat 3 61 0 3 653 210 222 0 0 chr3L 8939362 8939407 -15604150 + (TGGG)n Simple_repeat Simple_repeat 2 46 0 3 653 201 156 0 0 chr3L 8940174 8940206 -15603351 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3 653 232 29 147 0 chr3L 8940324 8940358 -15603199 - DM1731_LTR LTR Copia -222 114 76 3 653 30 45 0 0 chr3L 8944250 8944294 -15599263 + AT_rich Low_complexity Low_complexity 1 44 0 3 653 234 172 17 33 chr3L 8944843 8944903 -15598654 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 653 228 246 16 0 chr3L 8945758 8945819 -15597738 + (CA)n Simple_repeat Simple_repeat 2 63 0 3 653 445 146 22 0 chr3L 8946457 8946546 -15597011 + Transib-N1_DM DNA Transib 21 111 -403 3 653 23 33 0 0 chr3L 8952620 8952650 -15590907 + AT_rich Low_complexity Low_complexity 1 30 0 3 653 22 0 0 0 chr3L 8957954 8957976 -15585581 + AT_rich Low_complexity Low_complexity 1 22 0 3 653 23 33 0 0 chr3L 8961506 8961536 -15582021 + AT_rich Low_complexity Low_complexity 1 30 0 3 653 23 0 0 0 chr3L 8968089 8968112 -15575445 + AT_rich Low_complexity Low_complexity 1 23 0 3 653 212 161 0 35 chr3L 8974646 8974704 -15568853 + (CACTC)n Simple_repeat Simple_repeat 4 59 0 3 653 21 0 0 0 chr3L 8975360 8975381 -15568176 + AT_rich Low_complexity Low_complexity 1 21 0 3 653 31 0 0 0 chr3L 8983932 8983963 -15559594 + AT_rich Low_complexity Low_complexity 1 31 0 3 653 21 0 0 0 chr3L 8984258 8984279 -15559278 + AT_rich Low_complexity Low_complexity 1 21 0 3 653 189 74 0 0 chr3L 8985621 8985648 -15557909 + (CTG)n Simple_repeat Simple_repeat 1 27 0 3 653 21 0 0 0 chr3L 8990801 8990822 -15552735 + AT_rich Low_complexity Low_complexity 1 21 0 3 653 225 0 0 0 chr3L 8997244 8997269 -15546288 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3 653 22 35 0 0 chr3L 8997469 8997498 -15546059 + AT_rich Low_complexity Low_complexity 1 29 0 3 653 32 26 0 0 chr3L 9003039 9003078 -15540479 + AT_rich Low_complexity Low_complexity 1 39 0 3 653 208 139 0 0 chr3L 9008929 9008965 -15534592 + (T)n Simple_repeat Simple_repeat 1 36 0 3 653 180 0 0 0 chr3L 9012570 9012590 -15530967 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 653 204 194 0 0 chr3L 9015004 9015040 -15528517 + (CCGAA)n Simple_repeat Simple_repeat 2 37 0 3 653 189 107 0 0 chr3L 9016585 9016613 -15526944 + (GATTG)n Simple_repeat Simple_repeat 4 31 0 3 653 192 111 0 0 chr3L 9017254 9017290 -15526267 + (TCC)n Simple_repeat Simple_repeat 3 38 0 3 653 205 162 0 0 chr3L 9021598 9021635 -15521922 + CT-rich Low_complexity Low_complexity 1 37 0 3 653 23 0 0 0 chr3L 9021897 9021920 -15521637 + AT_rich Low_complexity Low_complexity 1 23 0 3 653 231 224 0 20 chr3L 9030572 9030622 -15512935 + (TATG)n Simple_repeat Simple_repeat 3 51 0 3 653 207 88 0 0 chr3L 9031110 9031144 -15512413 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 3 653 207 214 0 18 chr3L 9033929 9033986 -15509571 + (CAAA)n Simple_repeat Simple_repeat 2 57 0 3 653 243 61 0 0 chr3L 9035687 9035720 -15507837 + (CATAC)n Simple_repeat Simple_repeat 4 36 0 3 653 27 81 0 0 chr3L 9035953 9036015 -15507542 + AT_rich Low_complexity Low_complexity 1 62 0 3 653 37 23 0 0 chr3L 9041890 9041934 -15501623 + AT_rich Low_complexity Low_complexity 1 44 0 3 654 180 0 0 0 chr3L 9047032 9047052 -15496505 + (CAGTG)n Simple_repeat Simple_repeat 1 20 0 3 654 22 35 0 0 chr3L 9047996 9048025 -15495532 + AT_rich Low_complexity Low_complexity 1 29 0 3 654 252 0 0 0 chr3L 9049003 9049031 -15494526 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 654 24 53 0 0 chr3L 9050118 9050156 -15493401 + AT_rich Low_complexity Low_complexity 1 38 0 3 654 27 0 0 0 chr3L 9051047 9051074 -15492483 + AT_rich Low_complexity Low_complexity 1 27 0 3 654 255 61 0 0 chr3L 9054664 9054697 -15488860 + (CAT)n Simple_repeat Simple_repeat 1 33 0 3 654 249 146 0 0 chr3L 9062455 9062503 -15481054 + (TTG)n Simple_repeat Simple_repeat 1 48 0 3 654 3927 6 0 64 chr3L 9070081 9070595 -15472962 + T412LTR LTR LTR 1 481 0 3 654 58455 1 1 1 chr3L 9070281 9077180 -15466377 + DM412 LTR Gypsy 1 6897 0 3 654 3927 6 0 64 chr3L 9077070 9077584 -15465973 + T412LTR LTR LTR 1 481 0 3 654 186 103 0 0 chr3L 9082677 9082706 -15460851 + (CCA)n Simple_repeat Simple_repeat 2 30 0 3 654 25 31 0 0 chr3L 9085991 9086023 -15457534 + AT_rich Low_complexity Low_complexity 1 32 0 3 654 201 74 0 0 chr3L 9090509 9090536 -15453021 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 654 23 54 0 0 chr3L 9090743 9090780 -15452777 + AT_rich Low_complexity Low_complexity 1 37 0 3 654 224 244 24 48 chr3L 9090944 9091069 -15452488 + T-rich Low_complexity Low_complexity 3 124 0 3 654 23 0 0 0 chr3L 9091102 9091125 -15452432 + AT_rich Low_complexity Low_complexity 1 23 0 3 654 202 56 56 0 chr3L 9091321 9091357 -15452200 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 654 24 0 0 0 chr3L 9091491 9091515 -15452042 + AT_rich Low_complexity Low_complexity 1 24 0 3 654 25 65 0 0 chr3L 9091708 9091754 -15451803 + AT_rich Low_complexity Low_complexity 1 46 0 3 654 35 24 0 0 chr3L 9093543 9093585 -15449972 + AT_rich Low_complexity Low_complexity 1 42 0 3 654 267 160 40 0 chr3L 9093990 9094065 -15449492 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 654 237 65 0 0 chr3L 9094239 9094270 -15449287 + (TATG)n Simple_repeat Simple_repeat 2 32 0 3 654 24 0 0 0 chr3L 9094699 9094723 -15448834 + AT_rich Low_complexity Low_complexity 1 24 0 3 654 197 83 28 0 chr3L 9096225 9096261 -15447296 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 654 262 80 20 20 chr3L 9096678 9096729 -15446828 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 654 21 36 0 0 chr3L 9097008 9097036 -15446521 + AT_rich Low_complexity Low_complexity 1 28 0 3 654 227 93 23 0 chr3L 9098526 9098569 -15444988 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 654 218 262 12 12 chr3L 9098847 9098928 -15444629 + (TG)n Simple_repeat Simple_repeat 1 81 0 3 654 207 255 0 0 chr3L 9099307 9099354 -15444203 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 654 267 206 0 64 chr3L 9099480 9099589 -15443968 + (TTG)n Simple_repeat Simple_repeat 1 102 0 3 654 212 0 0 35 chr3L 9099700 9099729 -15443828 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 654 319 125 0 27 chr3L 9100075 9100149 -15443408 + (TTG)n Simple_repeat Simple_repeat 1 72 0 3 654 180 0 0 0 chr3L 9100306 9100326 -15443231 + (TGG)n Simple_repeat Simple_repeat 1 20 0 3 654 21 0 0 0 chr3L 9100500 9100521 -15443036 + AT_rich Low_complexity Low_complexity 1 21 0 3 654 198 0 0 0 chr3L 9100846 9100868 -15442689 + (TTGG)n Simple_repeat Simple_repeat 3 24 0 3 654 21 0 0 0 chr3L 9101020 9101041 -15442516 + AT_rich Low_complexity Low_complexity 1 21 0 3 654 22 35 0 0 chr3L 9101516 9101545 -15442012 + AT_rich Low_complexity Low_complexity 1 29 0 3 654 225 0 0 0 chr3L 9104496 9104521 -15439036 + (TTA)n Simple_repeat Simple_repeat 1 25 0 3 654 23 0 0 0 chr3L 9105083 9105106 -15438451 + AT_rich Low_complexity Low_complexity 1 23 0 3 654 203 252 0 78 chr3L 9105116 9105232 -15438325 + (CGAAA)n Simple_repeat Simple_repeat 4 110 0 3 654 239 163 0 20 chr3L 9105131 9105205 -15438352 + (CGGAA)n Simple_repeat Simple_repeat 1 72 0 3 654 264 100 0 0 chr3L 9105370 9105410 -15438147 + (TAG)n Simple_repeat Simple_repeat 3 42 0 3 654 180 219 0 0 chr3L 9106460 9106501 -15437056 + (CGAAT)n Simple_repeat Simple_repeat 5 45 0 3 654 233 109 22 0 chr3L 9106954 9107000 -15436557 + (CAG)n Simple_repeat Simple_repeat 1 47 0 3 654 204 254 48 0 chr3L 9108874 9108937 -15434620 + (CCCA)n Simple_repeat Simple_repeat 4 69 0 3 654 216 184 0 0 chr3L 9108898 9108936 -15434621 + (TCCA)n Simple_repeat Simple_repeat 1 38 0 3 654 369 86 0 0 chr3L 9108943 9109001 -15434556 + (CAGT)n Simple_repeat Simple_repeat 3 60 0 3 654 21 36 0 0 chr3L 9110517 9110545 -15433012 + AT_rich Low_complexity Low_complexity 1 28 0 3 654 186 103 0 0 chr3L 9111130 9111159 -15432398 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 654 233 128 21 0 chr3L 9111468 9111515 -15432042 + (CAT)n Simple_repeat Simple_repeat 1 48 0 3 654 219 36 0 0 chr3L 9111668 9111696 -15431861 + (CAG)n Simple_repeat Simple_repeat 2 29 0 3 654 207 162 0 0 chr3L 9112044 9112081 -15431476 + (TATG)n Simple_repeat Simple_repeat 4 40 0 3 654 237 65 0 0 chr3L 9114433 9114464 -15429093 + (CAGAG)n Simple_repeat Simple_repeat 3 33 0 3 654 201 159 0 0 chr3L 9115615 9115659 -15427898 + (TG)n Simple_repeat Simple_repeat 2 45 0 3 654 192 40 0 0 chr3L 9117298 9117323 -15426234 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 654 201 241 0 33 chr3L 9117830 9117890 -15425667 + (CATA)n Simple_repeat Simple_repeat 1 58 0 3 654 22 56 0 0 chr3L 9118942 9118978 -15424579 + AT_rich Low_complexity Low_complexity 1 36 0 3 654 229 186 0 0 chr3L 9120254 9120297 -15423260 + GA-rich Low_complexity Low_complexity 2 44 0 3 654 197 65 0 31 chr3L 9120880 9120912 -15422645 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 654 204 267 0 0 chr3L 9122147 9122192 -15421365 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 654 22 0 0 0 chr3L 9122305 9122327 -15421230 + AT_rich Low_complexity Low_complexity 1 22 0 3 654 28034 1 3 7 chr3L 9123703 9127416 -15416141 - DM412 LTR Gypsy 0 6897 1 3 654 28 29 0 0 chr3L 9130427 9130462 -15413095 + AT_rich Low_complexity Low_complexity 1 35 0 3 654 24 0 0 0 chr3L 9131450 9131474 -15412083 + AT_rich Low_complexity Low_complexity 1 24 0 3 654 31 0 0 0 chr3L 9131572 9131603 -15411954 + AT_rich Low_complexity Low_complexity 1 31 0 3 654 356 0 23 0 chr3L 9134631 9134675 -15408882 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 654 26 30 0 0 chr3L 9136527 9136560 -15406997 + AT_rich Low_complexity Low_complexity 1 33 0 3 654 23 54 0 0 chr3L 9137966 9138003 -15405554 + AT_rich Low_complexity Low_complexity 1 37 0 3 654 315 0 0 0 chr3L 9138050 9138085 -15405472 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 654 255 234 0 0 chr3L 9139077 9139141 -15404416 + T-rich Low_complexity Low_complexity 6 69 0 3 654 24 0 0 0 chr3L 9140186 9140210 -15403347 + AT_rich Low_complexity Low_complexity 1 24 0 3 654 240 122 0 0 chr3L 9142143 9142184 -15401373 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 654 221 159 0 0 chr3L 9142459 9142503 -15401054 + T-rich Low_complexity Low_complexity 1 44 0 3 654 211 200 15 44 chr3L 9144391 9144459 -15399098 + (CCG)n Simple_repeat Simple_repeat 1 66 0 3 654 232 233 0 0 chr3L 9145722 9145782 -15397775 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 654 270 239 0 58 chr3L 9147261 9147381 -15396176 + (TTG)n Simple_repeat Simple_repeat 2 114 0 3 654 275 72 0 23 chr3L 9148495 9148538 -15395019 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 654 23 0 0 0 chr3L 9148795 9148818 -15394739 + AT_rich Low_complexity Low_complexity 1 23 0 3 654 201 39 0 0 chr3L 9149454 9149480 -15394077 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 654 23 33 0 0 chr3L 9149508 9149538 -15394019 + AT_rich Low_complexity Low_complexity 1 30 0 3 654 180 0 0 0 chr3L 9149797 9149817 -15393740 + (TTG)n Simple_repeat Simple_repeat 1 20 0 3 654 276 53 0 0 chr3L 9151200 9151238 -15392319 + (TTG)n Simple_repeat Simple_repeat 3 40 0 3 654 246 32 0 0 chr3L 9151344 9151375 -15392182 + (TTG)n Simple_repeat Simple_repeat 1 31 0 3 654 216 0 0 0 chr3L 9152614 9152638 -15390919 + (T)n Simple_repeat Simple_repeat 1 24 0 3 654 217 78 0 73 chr3L 9152867 9152922 -15390635 + (TTG)n Simple_repeat Simple_repeat 1 51 0 3 654 180 0 0 0 chr3L 9154899 9154919 -15388638 + (T)n Simple_repeat Simple_repeat 1 20 0 3 654 195 69 0 0 chr3L 9155694 9155723 -15387834 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 3 654 204 135 0 0 chr3L 9156088 9156125 -15387432 + (ATTCG)n Simple_repeat Simple_repeat 4 40 0 3 654 221 243 0 14 chr3L 9156988 9157059 -15386498 + (TG)n Simple_repeat Simple_repeat 1 70 0 3 654 216 214 0 35 chr3L 9157230 9157288 -15386269 + (TAG)n Simple_repeat Simple_repeat 3 58 0 3 654 7959 1 0 0 chr3L 9157853 9158757 -15384800 + HOBO DNA hAT 1 904 -2112 3 654 4353 0 0 10 chr3L 9158755 9159259 -15384298 + HOBO DNA hAT 2518 3016 0 3 654 218 29 0 56 chr3L 9159798 9159834 -15383723 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3 654 24 91 0 0 chr3L 9160406 9160472 -15383085 + AT_rich Low_complexity Low_complexity 1 66 0 3 654 332 226 28 19 chr3L 9161646 9161754 -15381803 + (CAGAGA)n Simple_repeat Simple_repeat 6 114 0 3 654 252 154 0 0 chr3L 9162029 9162081 -15381476 + (TTG)n Simple_repeat Simple_repeat 2 53 0 3 654 252 122 0 0 chr3L 9162869 9162910 -15380647 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 3 654 183 42 0 0 chr3L 9163432 9163456 -15380101 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 654 23 0 0 0 chr3L 9164222 9164245 -15379312 + AT_rich Low_complexity Low_complexity 1 23 0 3 654 264 30 0 0 chr3L 9168086 9168119 -15375438 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 654 216 171 0 0 chr3L 9168296 9168337 -15375220 + (CAGG)n Simple_repeat Simple_repeat 3 43 0 3 654 220 216 0 0 chr3L 9170476 9170527 -15373030 + T-rich Low_complexity Low_complexity 1 51 0 3 654 204 146 24 0 chr3L 9170544 9170585 -15372972 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 654 183 42 0 0 chr3L 9171117 9171141 -15372416 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 654 24 53 0 0 chr3L 9171900 9171938 -15371619 + AT_rich Low_complexity Low_complexity 1 38 0 3 654 26 30 0 0 chr3L 9172017 9172050 -15371507 + AT_rich Low_complexity Low_complexity 1 33 0 3 654 29 60 0 0 chr3L 9173958 9174008 -15369549 + AT_rich Low_complexity Low_complexity 1 50 0 3 654 228 35 0 0 chr3L 9174514 9174543 -15369014 + (CA)n Simple_repeat Simple_repeat 2 30 0 3 654 201 229 0 0 chr3L 9174744 9174779 -15368778 + (CGTG)n Simple_repeat Simple_repeat 1 35 0 3 655 183 222 0 0 chr3L 9175509 9175554 -15368003 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 655 185 180 20 0 chr3L 9175715 9175765 -15367792 + (CA)n Simple_repeat Simple_repeat 2 52 0 3 655 200 311 0 0 chr3L 9176909 9176970 -15366587 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 655 201 39 0 0 chr3L 9178604 9178630 -15364927 + (CTCTG)n Simple_repeat Simple_repeat 2 27 0 3 655 270 298 11 0 chr3L 9179481 9179575 -15363982 + (CAA)n Simple_repeat Simple_repeat 1 95 0 3 655 228 100 0 0 chr3L 9180571 9180611 -15362946 + (A)n Simple_repeat Simple_repeat 1 40 0 3 655 209 204 0 0 chr3L 9181439 9181483 -15362074 + GA-rich Low_complexity Low_complexity 2 45 0 3 655 225 163 0 0 chr3L 9181645 9181694 -15361863 + (TTG)n Simple_repeat Simple_repeat 2 50 0 3 655 242 220 0 17 chr3L 9181880 9181940 -15361617 + (TTG)n Simple_repeat Simple_repeat 1 59 0 3 655 183 80 0 0 chr3L 9181967 9181992 -15361565 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 655 200 281 0 0 chr3L 9184006 9184063 -15359494 + (TCTCTG)n Simple_repeat Simple_repeat 2 58 0 3 655 24 32 0 0 chr3L 9186192 9186223 -15357334 + AT_rich Low_complexity Low_complexity 1 31 0 3 655 219 88 0 0 chr3L 9186494 9186528 -15357029 + (AGGTG)n Simple_repeat Simple_repeat 2 35 0 3 655 229 254 0 29 chr3L 9186589 9186658 -15356899 + (CAA)n Simple_repeat Simple_repeat 2 68 0 3 655 276 342 0 0 chr3L 9187782 9187896 -15355661 + A-rich Low_complexity Low_complexity 1 114 0 3 655 22 0 0 0 chr3L 9187949 9187971 -15355586 + AT_rich Low_complexity Low_complexity 1 22 0 3 655 190 106 43 0 chr3L 9188349 9188396 -15355161 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 655 201 187 32 42 chr3L 9190186 9190281 -15353276 + (TTTAA)n Simple_repeat Simple_repeat 3 96 0 3 655 29 0 0 0 chr3L 9191138 9191167 -15352390 + AT_rich Low_complexity Low_complexity 1 29 0 3 655 260 91 23 0 chr3L 9191870 9191914 -15351643 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 655 240 86 0 0 chr3L 9200572 9200607 -15342950 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 3 655 33 0 0 0 chr3L 9202314 9202347 -15341210 + AT_rich Low_complexity Low_complexity 1 33 0 3 655 270 0 0 0 chr3L 9212403 9212433 -15331124 + (T)n Simple_repeat Simple_repeat 1 30 0 3 655 5154 5 0 7 chr3L 9212433 9213008 -15330549 - LINEJ1_DM LINE Jockey 0 5020 4450 3 655 180 0 0 0 chr3L 9216583 9216603 -15326954 + (T)n Simple_repeat Simple_repeat 1 20 0 3 655 190 91 67 22 chr3L 9216697 9216742 -15326815 + A-rich Low_complexity Low_complexity 2 48 0 3 655 189 74 0 0 chr3L 9216862 9216889 -15326668 + (CAG)n Simple_repeat Simple_repeat 1 27 0 3 655 234 62 0 0 chr3L 9219680 9219712 -15323845 + (CAG)n Simple_repeat Simple_repeat 1 32 0 3 655 215 132 57 0 chr3L 9220080 9220133 -15323424 + (CAGT)n Simple_repeat Simple_repeat 1 56 0 3 655 208 143 0 0 chr3L 9220859 9220894 -15322663 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 3 655 24 0 0 0 chr3L 9225060 9225084 -15318473 + AT_rich Low_complexity Low_complexity 1 24 0 3 655 207 0 0 0 chr3L 9226863 9226886 -15316671 + (A)n Simple_repeat Simple_repeat 1 23 0 3 655 25 31 0 0 chr3L 9230744 9230776 -15312781 + AT_rich Low_complexity Low_complexity 1 32 0 3 655 183 42 0 0 chr3L 9233223 9233247 -15310310 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 655 281 188 12 0 chr3L 9236077 9236157 -15307400 + (CACCAT)n Simple_repeat Simple_repeat 3 83 0 3 655 22 0 0 0 chr3L 9237065 9237087 -15306470 + AT_rich Low_complexity Low_complexity 1 22 0 3 655 189 0 0 0 chr3L 9237092 9237113 -15306444 + (T)n Simple_repeat Simple_repeat 1 21 0 3 655 234 0 0 0 chr3L 9240510 9240536 -15303021 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 655 190 95 48 0 chr3L 9240901 9240943 -15302614 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 655 209 208 0 0 chr3L 9241125 9241219 -15302338 + (TATATG)n Simple_repeat Simple_repeat 1 94 0 3 655 260 260 13 0 chr3L 9242777 9242854 -15300703 + (TG)n Simple_repeat Simple_repeat 2 79 0 3 655 246 240 0 0 chr3L 9244735 9244785 -15298772 + (TTG)n Simple_repeat Simple_repeat 3 52 0 3 655 208 220 0 33 chr3L 9245485 9245546 -15298011 + A-rich Low_complexity Low_complexity 6 64 0 3 655 483 95 0 0 chr3L 9245640 9245714 -15297843 + (ACTG)n Simple_repeat Simple_repeat 1 74 0 3 655 282 132 0 0 chr3L 9248445 9248498 -15295059 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 655 24 0 0 0 chr3L 9248644 9248668 -15294889 + AT_rich Low_complexity Low_complexity 1 24 0 3 655 213 208 0 36 chr3L 9250259 9250314 -15293243 + A-rich Low_complexity Low_complexity 1 53 0 3 655 201 74 0 0 chr3L 9250460 9250487 -15293070 + (CTG)n Simple_repeat Simple_repeat 3 29 0 3 655 204 255 0 0 chr3L 9254658 9254705 -15288852 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 655 219 222 0 0 chr3L 9255562 9255607 -15287950 + C-rich Low_complexity Low_complexity 5 49 0 3 655 22 0 0 0 chr3L 9256416 9256438 -15287119 + AT_rich Low_complexity Low_complexity 1 22 0 3 655 237 163 0 0 chr3L 9256775 9256824 -15286733 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 655 183 167 0 0 chr3L 9257020 9257062 -15286495 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 655 210 154 0 0 chr3L 9260362 9260401 -15283156 + GA-rich Low_complexity Low_complexity 2 40 0 3 655 180 125 0 0 chr3L 9261092 9261124 -15282433 + (TCCGG)n Simple_repeat Simple_repeat 4 35 0 3 655 216 167 0 0 chr3L 9261207 9261255 -15282302 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 655 23 0 0 0 chr3L 9261796 9261819 -15281738 + AT_rich Low_complexity Low_complexity 1 23 0 3 655 205 350 0 12 chr3L 9262117 9262198 -15281359 + (CGG)n Simple_repeat Simple_repeat 2 81 0 3 655 4017 0 0 0 chr3L 9263772 9264200 -15279357 - ROO_LTR LTR Pao 0 428 1 3 655 11152 0 1 0 chr3L 9264200 9265426 -15278131 - ROO_I LTR Pao 0 8256 7030 3 655 50033 2 28 0 chr3L 9265414 9271041 -15272516 - ROO_I LTR Pao -2475 5781 1 3 655 4017 0 0 0 chr3L 9271041 9271469 -15272088 - ROO_LTR LTR Pao 0 428 1 3 655 195 42 0 0 chr3L 9273224 9273248 -15270309 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 655 189 74 0 0 chr3L 9273282 9273309 -15270248 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 655 37 0 0 0 chr3L 9277471 9277508 -15266049 + AT_rich Low_complexity Low_complexity 1 37 0 3 655 25 65 0 0 chr3L 9278211 9278257 -15265300 + AT_rich Low_complexity Low_complexity 1 46 0 3 655 28 0 0 0 chr3L 9278939 9278967 -15264590 + AT_rich Low_complexity Low_complexity 1 28 0 3 655 207 69 0 0 chr3L 9279453 9279482 -15264075 + (TTCGG)n Simple_repeat Simple_repeat 1 29 0 3 655 25 0 0 0 chr3L 9280051 9280076 -15263481 + AT_rich Low_complexity Low_complexity 1 25 0 3 655 189 0 0 0 chr3L 9282555 9282576 -15260981 + (CCAA)n Simple_repeat Simple_repeat 4 24 0 3 655 192 40 0 0 chr3L 9284450 9284475 -15259082 + (CTA)n Simple_repeat Simple_repeat 2 26 0 3 655 183 114 0 0 chr3L 9291927 9291962 -15251595 + (T)n Simple_repeat Simple_repeat 1 35 0 3 655 234 0 0 0 chr3L 9293153 9293179 -15250378 + (TTTCG)n Simple_repeat Simple_repeat 5 30 0 3 655 201 167 0 0 chr3L 9294035 9294071 -15249486 + T-rich Low_complexity Low_complexity 1 36 0 3 655 192 158 0 0 chr3L 9294666 9294704 -15248853 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 655 216 0 0 0 chr3L 9294827 9294851 -15248706 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 655 195 42 0 0 chr3L 9295183 9295207 -15248350 + (CATA)n Simple_repeat Simple_repeat 3 26 0 3 655 301 136 30 0 chr3L 9295991 9296057 -15247500 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 655 208 241 19 0 chr3L 9300102 9300156 -15243401 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 655 195 42 0 0 chr3L 9300894 9300918 -15242639 + (AGATG)n Simple_repeat Simple_repeat 1 24 0 3 655 206 128 26 0 chr3L 9301290 9301329 -15242228 + A-rich Low_complexity Low_complexity 4 43 0 3 655 320 208 0 0 chr3L 9304671 9304748 -15238809 - ROO_I LTR Pao -7516 740 664 3 656 183 42 0 0 chr3L 9306235 9306259 -15237298 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 656 246 269 0 0 chr3L 9309175 9309227 -15234330 + polypurine Low_complexity Low_complexity 4 55 0 3 656 215 61 30 0 chr3L 9310622 9310655 -15232902 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 656 23 0 0 0 chr3L 9314359 9314382 -15229175 + AT_rich Low_complexity Low_complexity 1 23 0 3 656 191 133 22 0 chr3L 9314762 9314807 -15228750 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 656 306 138 0 0 chr3L 9315358 9315416 -15228141 + (TGGA)n Simple_repeat Simple_repeat 1 58 0 3 656 248 91 0 22 chr3L 9315780 9315825 -15227732 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 656 192 234 0 0 chr3L 9315994 9316041 -15227516 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 656 22 70 0 0 chr3L 9320185 9320228 -15223329 + AT_rich Low_complexity Low_complexity 1 43 0 3 656 309 100 0 0 chr3L 9320929 9320979 -15222578 + (CAA)n Simple_repeat Simple_repeat 2 51 0 3 656 30 0 0 0 chr3L 9326442 9326472 -15217085 + AT_rich Low_complexity Low_complexity 1 30 0 3 656 22 0 0 0 chr3L 9327120 9327142 -15216415 + AT_rich Low_complexity Low_complexity 1 22 0 3 656 29 28 0 0 chr3L 9328258 9328294 -15215263 + AT_rich Low_complexity Low_complexity 1 36 0 3 656 21 0 0 0 chr3L 9329615 9329636 -15213921 + AT_rich Low_complexity Low_complexity 1 21 0 3 656 21 36 0 0 chr3L 9331103 9331131 -15212426 + AT_rich Low_complexity Low_complexity 1 28 0 3 656 23 0 0 0 chr3L 9331942 9331965 -15211592 + AT_rich Low_complexity Low_complexity 1 23 0 3 656 22 0 0 0 chr3L 9332295 9332317 -15211240 + AT_rich Low_complexity Low_complexity 1 22 0 3 656 213 175 0 0 chr3L 9332508 9332548 -15211009 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 656 216 135 0 0 chr3L 9332734 9332771 -15210786 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 656 22 35 0 0 chr3L 9336893 9336922 -15206635 + AT_rich Low_complexity Low_complexity 1 29 0 3 656 32 0 0 0 chr3L 9338564 9338596 -15204961 + AT_rich Low_complexity Low_complexity 1 32 0 3 656 41 0 0 0 chr3L 9341634 9341675 -15201882 + AT_rich Low_complexity Low_complexity 1 41 0 3 656 25 31 0 0 chr3L 9353062 9353094 -15190463 + AT_rich Low_complexity Low_complexity 1 32 0 3 656 32 0 0 0 chr3L 9353180 9353212 -15190345 + AT_rich Low_complexity Low_complexity 1 32 0 3 656 21 36 0 0 chr3L 9360229 9360257 -15183300 + AT_rich Low_complexity Low_complexity 1 28 0 3 656 200 184 20 20 chr3L 9361142 9361192 -15182365 + (TA)n Simple_repeat Simple_repeat 1 50 0 3 656 180 0 0 0 chr3L 9361551 9361571 -15181986 + (CCAA)n Simple_repeat Simple_repeat 2 21 0 3 656 25 0 0 0 chr3L 9364688 9364713 -15178844 + AT_rich Low_complexity Low_complexity 1 25 0 3 656 185 0 40 0 chr3L 9366584 9366609 -15176948 + (TTAA)n Simple_repeat Simple_repeat 4 29 0 3 656 22 35 0 0 chr3L 9368104 9368133 -15175424 + AT_rich Low_complexity Low_complexity 1 29 0 3 656 205 179 43 29 chr3L 9370531 9370600 -15172957 + GA-rich Low_complexity Low_complexity 1 70 0 3 656 198 0 0 0 chr3L 9373235 9373257 -15170300 + (GCTG)n Simple_repeat Simple_repeat 3 24 0 3 656 200 224 0 20 chr3L 9373356 9373406 -15170151 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 3 656 210 150 0 0 chr3L 9374641 9374681 -15168876 + (CATA)n Simple_repeat Simple_repeat 3 42 0 3 656 205 213 0 21 chr3L 9376133 9376181 -15167376 + (CATA)n Simple_repeat Simple_repeat 1 47 0 3 656 198 208 0 0 chr3L 9376413 9376461 -15167096 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 656 235 259 0 0 chr3L 9376704 9376758 -15166799 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 656 204 93 0 100 chr3L 9377935 9377995 -15165562 + GA-rich Low_complexity Low_complexity 2 55 0 3 656 31 26 0 0 chr3L 9378766 9378804 -15164753 + AT_rich Low_complexity Low_complexity 1 38 0 3 656 31 26 0 0 chr3L 9379947 9379985 -15163572 + AT_rich Low_complexity Low_complexity 1 38 0 3 656 267 31 0 0 chr3L 9383548 9383580 -15159977 + (CAATC)n Simple_repeat Simple_repeat 4 35 0 3 656 25483 1 0 0 chr3L 9385629 9388389 -15155168 + DOC LINE Jockey 1966 4725 0 3 656 258 81 0 0 chr3L 9388418 9388455 -15155102 + (CAGGA)n Simple_repeat Simple_repeat 1 37 0 3 656 21 0 0 0 chr3L 9390088 9390109 -15153448 + AT_rich Low_complexity Low_complexity 1 21 0 3 656 220 220 0 0 chr3L 9391491 9391541 -15152016 + T-rich Low_complexity Low_complexity 1 50 0 3 656 24 67 0 0 chr3L 9396136 9396181 -15147376 + AT_rich Low_complexity Low_complexity 1 45 0 3 656 194 62 31 0 chr3L 9399631 9399663 -15143894 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 656 378 42 0 0 chr3L 9400665 9400713 -15142844 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 3 656 26 64 0 0 chr3L 9404003 9404050 -15139507 + AT_rich Low_complexity Low_complexity 1 47 0 3 656 205 217 0 42 chr3L 9406538 9406586 -15136971 + (CAG)n Simple_repeat Simple_repeat 1 46 0 3 656 186 171 0 0 chr3L 9407724 9407765 -15135792 + (TTCGGG)n Simple_repeat Simple_repeat 4 44 0 3 656 23 0 0 0 chr3L 9408474 9408497 -15135060 + AT_rich Low_complexity Low_complexity 1 23 0 3 656 259 298 18 18 chr3L 9409378 9409549 -15134008 + (CTG)n Simple_repeat Simple_repeat 1 171 0 3 656 264 111 0 0 chr3L 9409699 9409744 -15133813 + (CTG)n Simple_repeat Simple_repeat 1 45 0 3 656 180 0 0 0 chr3L 9410223 9410243 -15133314 + (CCA)n Simple_repeat Simple_repeat 2 21 0 3 656 22 35 0 0 chr3L 9410638 9410667 -15132890 + AT_rich Low_complexity Low_complexity 1 29 0 3 656 219 36 0 0 chr3L 9411253 9411281 -15132276 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3 656 23 54 0 0 chr3L 9423152 9423189 -15120368 + AT_rich Low_complexity Low_complexity 1 37 0 3 656 24 0 0 0 chr3L 9424891 9424915 -15118642 + AT_rich Low_complexity Low_complexity 1 24 0 3 656 22 0 0 0 chr3L 9425242 9425264 -15118293 + AT_rich Low_complexity Low_complexity 1 22 0 3 656 234 128 0 0 chr3L 9426790 9426829 -15116728 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 656 21 0 0 0 chr3L 9428708 9428729 -15114828 + AT_rich Low_complexity Low_complexity 1 21 0 3 656 186 43 0 0 chr3L 9430383 9430406 -15113151 + (CAA)n Simple_repeat Simple_repeat 3 25 0 3 656 260 197 87 79 chr3L 9431788 9431915 -15111642 - ROO_I LTR Pao -7487 769 642 3 656 183 80 0 0 chr3L 9432170 9432195 -15111362 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 656 22 0 0 0 chr3L 9432816 9432838 -15110719 + AT_rich Low_complexity Low_complexity 1 22 0 3 656 1359 117 90 0 chr3L 9432882 9433104 -15110453 - DNAREP1_DM LINE Penelope -3 591 350 3 656 822 158 19 112 chr3L 9433099 9433305 -15110252 - DNAREP1_DM LINE Penelope -406 188 2 3 656 195 42 0 0 chr3L 9434248 9434272 -15109285 + (CTG)n Simple_repeat Simple_repeat 1 24 0 3 656 230 122 0 0 chr3L 9434847 9434888 -15108669 - ROO_I LTR Pao -7521 735 695 3 656 207 188 0 0 chr3L 9434889 9434937 -15108620 + (CGG)n Simple_repeat Simple_repeat 1 48 0 3 656 34 24 0 0 chr3L 9435571 9435612 -15107945 + AT_rich Low_complexity Low_complexity 1 41 0 3 656 22 56 0 0 chr3L 9435810 9435846 -15107711 + AT_rich Low_complexity Low_complexity 1 36 0 3 656 750 193 202 24 chr3L 9436082 9436374 -15107183 + HETA LINE telomeric 5729 6072 -9 3 656 32 0 0 0 chr3L 9436557 9436589 -15106968 + AT_rich Low_complexity Low_complexity 1 32 0 3 10 12514 91 3 1 chr3L 9436665 9438397 -15105160 - S_DM DNA Tc1 0 1736 1 3 657 1045 111 122 6 chr3L 9438569 9438750 -15104807 - DMCR1A LINE CR1 -201 4269 4068 3 657 259 159 0 0 chr3L 9439427 9439471 -15104086 + DNAREP1_DM LINE Penelope 29 72 -522 3 657 1800 73 110 15 chr3L 9439570 9439833 -15103724 + DNAREP1_DM LINE Penelope 307 594 0 3 657 397 188 133 52 chr3L 9439717 9439852 -15103705 - P_DG DNA P 0 2888 2743 3 657 33 0 0 0 chr3L 9441281 9441314 -15102243 + AT_rich Low_complexity Low_complexity 1 33 0 3 657 22 56 0 0 chr3L 9454434 9454470 -15089087 + AT_rich Low_complexity Low_complexity 1 36 0 3 657 22 0 0 0 chr3L 9456041 9456063 -15087494 + AT_rich Low_complexity Low_complexity 1 22 0 3 657 206 222 0 22 chr3L 9456158 9456204 -15087353 + (CAG)n Simple_repeat Simple_repeat 2 46 0 3 657 230 237 0 22 chr3L 9459402 9459481 -15084076 + CT-rich Low_complexity Low_complexity 1 77 0 3 657 264 282 14 0 chr3L 9460425 9460496 -15083061 + (TATG)n Simple_repeat Simple_repeat 2 73 0 3 657 201 159 0 0 chr3L 9460936 9460980 -15082577 + (CAA)n Simple_repeat Simple_repeat 1 44 0 3 657 292 206 10 71 chr3L 9461178 9461277 -15082280 + A-rich Low_complexity Low_complexity 3 95 0 3 657 237 170 19 0 chr3L 9462316 9462369 -15081188 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 657 210 229 0 0 chr3L 9462558 9462606 -15080951 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 657 201 74 0 0 chr3L 9463543 9463570 -15079987 + (CAT)n Simple_repeat Simple_repeat 2 28 0 3 657 30 0 0 0 chr3L 9463865 9463895 -15079662 + AT_rich Low_complexity Low_complexity 1 30 0 3 657 284 155 14 0 chr3L 9464237 9464308 -15079249 + (CAA)n Simple_repeat Simple_repeat 3 74 0 3 657 240 343 0 22 chr3L 9464401 9464538 -15079019 + (CAG)n Simple_repeat Simple_repeat 3 136 0 3 657 315 177 0 0 chr3L 9464557 9464636 -15078921 + ROO_I LTR Pao 656 734 -7522 3 657 22 0 0 0 chr3L 9465527 9465549 -15078008 + AT_rich Low_complexity Low_complexity 1 22 0 3 657 22 0 0 0 chr3L 9466008 9466030 -15077527 + AT_rich Low_complexity Low_complexity 1 22 0 3 657 333 239 0 0 chr3L 9466288 9466376 -15077181 + ROO_I LTR Pao 641 728 -7528 3 657 225 154 0 0 chr3L 9467671 9467710 -15075847 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 657 226 213 32 16 chr3L 9468006 9468068 -15075489 + (CATATA)n Simple_repeat Simple_repeat 1 63 0 3 657 267 225 0 0 chr3L 9470399 9470470 -15073087 + (TA)n Simple_repeat Simple_repeat 1 71 0 3 657 248 241 28 0 chr3L 9473041 9473149 -15070408 + GA-rich Low_complexity Low_complexity 5 115 0 3 657 24 0 0 0 chr3L 9482894 9482918 -15060639 + AT_rich Low_complexity Low_complexity 1 24 0 3 657 210 231 0 0 chr3L 9485380 9485445 -15058112 + (CAT)n Simple_repeat Simple_repeat 3 67 0 3 657 22 0 0 0 chr3L 9494793 9494815 -15048742 + AT_rich Low_complexity Low_complexity 1 22 0 3 657 4017 0 0 0 chr3L 9494855 9495283 -15048274 + ROO_LTR LTR Pao 1 428 0 3 657 216 0 0 0 chr3L 9496019 9496043 -15047514 + (A)n Simple_repeat Simple_repeat 1 24 0 3 657 43 20 0 0 chr3L 9496583 9496633 -15046924 + AT_rich Low_complexity Low_complexity 1 50 0 3 657 37 23 0 0 chr3L 9498577 9498621 -15044936 + AT_rich Low_complexity Low_complexity 1 44 0 3 657 200 227 0 0 chr3L 9500186 9500230 -15043327 + (ATTTG)n Simple_repeat Simple_repeat 4 47 0 3 657 28 48 0 0 chr3L 9501994 9502036 -15041521 + AT_rich Low_complexity Low_complexity 1 42 0 3 657 183 42 0 0 chr3L 9502240 9502264 -15041293 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 657 204 97 0 0 chr3L 9516581 9516612 -15026945 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 657 223 104 20 20 chr3L 9518749 9518798 -15024759 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 657 192 77 0 0 chr3L 9518916 9518942 -15024615 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 657 14000 1 0 1 chr3L 9519640 9521262 -15022295 - DOC LINE Jockey 0 4725 3106 3 657 29 60 0 0 chr3L 9523840 9523890 -15019667 + AT_rich Low_complexity Low_complexity 1 50 0 3 657 210 162 0 0 chr3L 9524759 9524796 -15018761 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 3 657 22 0 0 0 chr3L 9526253 9526275 -15017282 + AT_rich Low_complexity Low_complexity 1 22 0 3 657 58083 1 1 9 chr3L 9526907 9534410 -15009147 + DM412 LTR Gypsy 1 6897 0 3 657 25 31 0 0 chr3L 9535166 9535198 -15008359 + AT_rich Low_complexity Low_complexity 1 32 0 3 657 22 0 0 0 chr3L 9541416 9541438 -15002119 + AT_rich Low_complexity Low_complexity 1 22 0 3 657 267 79 0 0 chr3L 9542026 9542064 -15001493 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 657 186 43 0 0 chr3L 9543882 9543905 -14999652 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 657 216 86 0 0 chr3L 9544377 9544412 -14999145 + (A)n Simple_repeat Simple_repeat 1 35 0 3 657 23 0 0 0 chr3L 9544852 9544875 -14998682 + AT_rich Low_complexity Low_complexity 1 23 0 3 657 208 307 0 0 chr3L 9545025 9545100 -14998457 + A-rich Low_complexity Low_complexity 2 76 0 3 657 183 266 0 0 chr3L 9546277 9546341 -14997216 + (CCCGAA)n Simple_repeat Simple_repeat 3 66 0 3 657 229 109 21 21 chr3L 9547434 9547481 -14996076 + (TA)n Simple_repeat Simple_repeat 1 47 0 3 657 216 158 0 0 chr3L 9547685 9547723 -14995834 + (TTA)n Simple_repeat Simple_repeat 2 39 0 3 657 30 27 0 0 chr3L 9549657 9549694 -14993863 + AT_rich Low_complexity Low_complexity 1 37 0 3 657 210 37 0 0 chr3L 9549869 9549896 -14993661 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 657 23 54 0 0 chr3L 9552302 9552339 -14991218 + AT_rich Low_complexity Low_complexity 1 37 0 3 657 24 0 0 0 chr3L 9552530 9552554 -14991003 + AT_rich Low_complexity Low_complexity 1 24 0 3 657 223 163 0 0 chr3L 9560780 9560823 -14982734 + (CCAA)n Simple_repeat Simple_repeat 1 43 0 3 657 24 32 0 0 chr3L 9561439 9561470 -14982087 + AT_rich Low_complexity Low_complexity 1 31 0 3 657 186 103 0 0 chr3L 9562507 9562536 -14981021 + (AACTG)n Simple_repeat Simple_repeat 2 30 0 3 657 180 0 0 0 chr3L 9565061 9565081 -14978476 + (T)n Simple_repeat Simple_repeat 1 20 0 3 657 2183 0 0 15 chr3L 9565081 9565345 -14978212 - LINEJ1_DM LINE Jockey 0 5020 4761 3 657 24 32 0 0 chr3L 9567415 9567446 -14976111 + AT_rich Low_complexity Low_complexity 1 31 0 3 658 46586 6 0 0 chr3L 9569070 9574081 -14969476 - LINEJ1_DM LINE Jockey 0 5020 10 3 658 23 0 0 0 chr3L 9575397 9575420 -14968137 + AT_rich Low_complexity Low_complexity 1 23 0 3 658 21 95 0 0 chr3L 9576768 9576831 -14966726 + AT_rich Low_complexity Low_complexity 1 63 0 3 658 207 167 0 0 chr3L 9577839 9577881 -14965676 + (TTTCG)n Simple_repeat Simple_repeat 3 44 0 3 658 26 0 0 0 chr3L 9579688 9579714 -14963843 + AT_rich Low_complexity Low_complexity 1 26 0 3 658 22 35 0 0 chr3L 9583318 9583347 -14960210 + AT_rich Low_complexity Low_complexity 1 29 0 3 658 43 0 0 0 chr3L 9585118 9585161 -14958396 + AT_rich Low_complexity Low_complexity 1 43 0 3 658 315 71 0 0 chr3L 9585987 9586029 -14957528 + (CAG)n Simple_repeat Simple_repeat 3 44 0 3 658 227 114 0 22 chr3L 9586111 9586156 -14957401 + (CAG)n Simple_repeat Simple_repeat 2 45 0 3 658 257 279 0 71 chr3L 9586615 9586700 -14956857 + ROO_I LTR Pao 648 726 -7530 3 658 252 122 0 0 chr3L 9588502 9588543 -14955014 + (CGAAA)n Simple_repeat Simple_repeat 3 43 0 3 658 23 33 0 0 chr3L 9590246 9590276 -14953281 + AT_rich Low_complexity Low_complexity 1 30 0 3 658 26 64 0 0 chr3L 9597279 9597326 -14946231 + AT_rich Low_complexity Low_complexity 1 47 0 3 658 21 0 0 0 chr3L 9597360 9597381 -14946176 + AT_rich Low_complexity Low_complexity 1 21 0 3 658 24 0 0 0 chr3L 9598555 9598579 -14944978 + AT_rich Low_complexity Low_complexity 1 24 0 3 658 428 0 0 0 chr3L 9605724 9605776 -14937781 + ALA_DM Unknown Unknown 1 52 0 3 658 21 0 0 0 chr3L 9610840 9610861 -14932696 + AT_rich Low_complexity Low_complexity 1 21 0 3 658 24 0 0 0 chr3L 9611043 9611067 -14932490 + AT_rich Low_complexity Low_complexity 1 24 0 3 658 198 0 0 0 chr3L 9622679 9622701 -14920856 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 658 21 57 0 0 chr3L 9636457 9636492 -14907065 + AT_rich Low_complexity Low_complexity 1 35 0 3 658 180 152 0 0 chr3L 9637035 9637068 -14906489 + (CTG)n Simple_repeat Simple_repeat 3 35 0 3 658 218 136 68 0 chr3L 9639106 9639150 -14904407 + T-rich Low_complexity Low_complexity 3 49 0 3 658 30 0 0 0 chr3L 9643397 9643427 -14900130 + AT_rich Low_complexity Low_complexity 1 30 0 3 658 21 36 0 0 chr3L 9648533 9648561 -14894996 + AT_rich Low_complexity Low_complexity 1 28 0 3 658 418 229 0 43 chr3L 9658447 9658634 -14884923 + T-rich Low_complexity Low_complexity 1 179 0 3 658 203 114 23 0 chr3L 9658815 9658859 -14884698 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 658 24 0 0 0 chr3L 9660996 9661020 -14882537 + AT_rich Low_complexity Low_complexity 1 24 0 3 658 358 161 35 0 chr3L 9664257 9664344 -14879213 - ROO_I LTR Pao -7523 733 644 3 658 255 61 0 0 chr3L 9668888 9668921 -14874636 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 658 195 162 0 0 chr3L 9670396 9670433 -14873124 + (TGG)n Simple_repeat Simple_repeat 2 38 0 3 658 195 100 0 0 chr3L 9671088 9671118 -14872439 + (TATG)n Simple_repeat Simple_repeat 3 32 0 3 658 249 119 0 0 chr3L 9671422 9671464 -14872093 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 658 22 35 0 0 chr3L 9674184 9674213 -14869344 + AT_rich Low_complexity Low_complexity 1 29 0 3 658 198 131 0 62 chr3L 9676690 9676755 -14866802 + T-rich Low_complexity Low_complexity 2 62 0 3 658 228 149 0 0 chr3L 9676924 9676971 -14866586 + (TG)n Simple_repeat Simple_repeat 2 48 0 3 658 23 0 0 0 chr3L 9677563 9677586 -14865971 + AT_rich Low_complexity Low_complexity 1 23 0 3 658 22 56 0 0 chr3L 9680675 9680711 -14862846 + AT_rich Low_complexity Low_complexity 1 36 0 3 658 25 83 0 0 chr3L 9681075 9681135 -14862422 + AT_rich Low_complexity Low_complexity 1 60 0 3 658 219 229 0 0 chr3L 9681706 9681754 -14861803 + GA-rich Low_complexity Low_complexity 1 48 0 3 658 201 39 0 0 chr3L 9683066 9683092 -14860465 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 658 21 0 0 0 chr3L 9683385 9683406 -14860151 + AT_rich Low_complexity Low_complexity 1 21 0 3 658 240 59 0 0 chr3L 9683462 9683496 -14860061 + (T)n Simple_repeat Simple_repeat 1 34 0 3 658 21 36 0 0 chr3L 9684254 9684282 -14859275 + AT_rich Low_complexity Low_complexity 1 28 0 3 658 29 0 0 0 chr3L 9686796 9686825 -14856732 + AT_rich Low_complexity Low_complexity 1 29 0 3 658 26 0 0 0 chr3L 9686860 9686886 -14856671 + AT_rich Low_complexity Low_complexity 1 26 0 3 658 22 0 0 0 chr3L 9687827 9687849 -14855708 + AT_rich Low_complexity Low_complexity 1 22 0 3 658 26 0 0 0 chr3L 9687965 9687991 -14855566 + AT_rich Low_complexity Low_complexity 1 26 0 3 658 27 49 0 0 chr3L 9688797 9688838 -14854719 + AT_rich Low_complexity Low_complexity 1 41 0 3 658 180 97 0 0 chr3L 9693318 9693349 -14850208 + (TAAA)n Simple_repeat Simple_repeat 3 33 0 3 658 24 32 0 0 chr3L 9697007 9697038 -14846519 + AT_rich Low_complexity Low_complexity 1 31 0 3 658 22 0 0 0 chr3L 9697289 9697311 -14846246 + AT_rich Low_complexity Low_complexity 1 22 0 3 658 213 154 0 0 chr3L 9697939 9697978 -14845579 + (CAA)n Simple_repeat Simple_repeat 2 40 0 3 658 245 298 0 0 chr3L 9698765 9698869 -14844688 + (CAG)n Simple_repeat Simple_repeat 2 105 0 3 659 219 268 0 27 chr3L 9701762 9701883 -14841674 + (CAA)n Simple_repeat Simple_repeat 1 117 0 3 659 370 194 0 0 chr3L 9702067 9702170 -14841387 + ROO_I LTR Pao 641 743 -7513 3 659 248 255 75 0 chr3L 9702170 9702264 -14841293 + ROO_I LTR Pao 645 745 -7511 3 659 207 203 0 0 chr3L 9702767 9702826 -14840731 + A-rich Low_complexity Low_complexity 1 59 0 3 659 180 0 0 0 chr3L 9702950 9702970 -14840587 + (TTA)n Simple_repeat Simple_repeat 1 20 0 3 659 206 105 26 0 chr3L 9704211 9704249 -14839308 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 659 264 238 0 16 chr3L 9707827 9707920 -14835637 + (TG)n Simple_repeat Simple_repeat 1 91 0 3 659 314 291 0 48 chr3L 9708910 9709098 -14834459 + (CCA)n Simple_repeat Simple_repeat 1 179 0 3 659 24 0 0 0 chr3L 9710129 9710153 -14833404 + AT_rich Low_complexity Low_complexity 1 24 0 3 659 201 132 0 0 chr3L 9710748 9710786 -14832771 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 659 24 0 0 0 chr3L 9710794 9710818 -14832739 + AT_rich Low_complexity Low_complexity 1 24 0 3 659 21 71 0 0 chr3L 9712234 9712276 -14831281 + AT_rich Low_complexity Low_complexity 1 42 0 3 659 29 0 0 0 chr3L 9719735 9719764 -14823793 + AT_rich Low_complexity Low_complexity 1 29 0 3 659 22 56 0 0 chr3L 9719882 9719918 -14823639 + AT_rich Low_complexity Low_complexity 1 36 0 3 659 203 213 13 0 chr3L 9720560 9720635 -14822922 + (CAG)n Simple_repeat Simple_repeat 2 77 0 3 659 201 167 0 0 chr3L 9722058 9722094 -14821463 + A-rich Low_complexity Low_complexity 5 40 0 3 659 21 0 0 0 chr3L 9722718 9722739 -14820818 + AT_rich Low_complexity Low_complexity 1 21 0 3 659 30 100 0 0 chr3L 9722916 9723016 -14820541 + AT_rich Low_complexity Low_complexity 1 100 0 3 659 213 159 0 0 chr3L 9727984 9728028 -14815529 + (ATG)n Simple_repeat Simple_repeat 3 46 0 3 659 239 54 27 0 chr3L 9730528 9730565 -14812992 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 659 216 97 0 0 chr3L 9735250 9735281 -14808276 + (GTATG)n Simple_repeat Simple_repeat 3 33 0 3 659 22 0 0 0 chr3L 9736501 9736523 -14807034 + AT_rich Low_complexity Low_complexity 1 22 0 3 659 207 269 0 0 chr3L 9738405 9738457 -14805100 + (TTG)n Simple_repeat Simple_repeat 1 52 0 3 659 25 0 0 0 chr3L 9738741 9738766 -14804791 + AT_rich Low_complexity Low_complexity 1 25 0 3 659 192 125 0 0 chr3L 9742658 9742690 -14800867 + (TTG)n Simple_repeat Simple_repeat 2 33 0 3 659 22 0 0 0 chr3L 9743923 9743945 -14799612 + AT_rich Low_complexity Low_complexity 1 22 0 3 659 21 57 0 0 chr3L 9745148 9745183 -14798374 + AT_rich Low_complexity Low_complexity 1 35 0 3 659 228 231 0 0 chr3L 9746212 9746264 -14797293 + (CTG)n Simple_repeat Simple_repeat 3 54 0 3 659 21 0 0 0 chr3L 9748894 9748915 -14794642 + AT_rich Low_complexity Low_complexity 1 21 0 3 659 245 288 0 12 chr3L 9750593 9750674 -14792883 + (TA)n Simple_repeat Simple_repeat 2 81 0 3 659 201 94 0 0 chr3L 9750769 9750801 -14792756 + (T)n Simple_repeat Simple_repeat 1 32 0 3 659 25 31 0 0 chr3L 9751483 9751515 -14792042 + AT_rich Low_complexity Low_complexity 1 32 0 3 659 21 36 0 0 chr3L 9756357 9756385 -14787172 + AT_rich Low_complexity Low_complexity 1 28 0 3 659 27 0 0 0 chr3L 9757537 9757564 -14785993 + AT_rich Low_complexity Low_complexity 1 27 0 3 659 21 0 0 0 chr3L 9760445 9760466 -14783091 + AT_rich Low_complexity Low_complexity 1 21 0 3 659 224 246 0 14 chr3L 9763184 9763254 -14780303 + (CATATA)n Simple_repeat Simple_repeat 6 74 0 3 659 22 70 0 0 chr3L 9765024 9765067 -14778490 + AT_rich Low_complexity Low_complexity 1 43 0 3 659 228 86 0 0 chr3L 9767428 9767463 -14776094 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 659 216 111 0 0 chr3L 9768778 9768814 -14774743 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 659 198 150 0 0 chr3L 9769135 9769175 -14774382 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 659 23 86 0 0 chr3L 9769588 9769646 -14773911 + AT_rich Low_complexity Low_complexity 1 58 0 3 659 23 33 0 0 chr3L 9773185 9773215 -14770342 + AT_rich Low_complexity Low_complexity 1 30 0 3 659 219 189 0 0 chr3L 9774553 9774606 -14768951 + (CAA)n Simple_repeat Simple_repeat 3 55 0 3 659 282 115 0 0 chr3L 9780666 9780718 -14762839 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 659 183 42 0 0 chr3L 9783392 9783416 -14760141 + (AGATG)n Simple_repeat Simple_repeat 1 24 0 3 659 27 0 0 0 chr3L 9784585 9784612 -14758945 + AT_rich Low_complexity Low_complexity 1 27 0 3 659 231 61 0 0 chr3L 9785128 9785161 -14758396 + (CTG)n Simple_repeat Simple_repeat 1 33 0 3 659 25 51 0 0 chr3L 9787343 9787382 -14756175 + AT_rich Low_complexity Low_complexity 1 39 0 3 659 253 214 21 43 chr3L 9792010 9792103 -14751454 + (CATA)n Simple_repeat Simple_repeat 4 94 0 3 659 22 0 0 0 chr3L 9794410 9794432 -14749125 + AT_rich Low_complexity Low_complexity 1 22 0 3 659 217 164 14 29 chr3L 9801698 9801767 -14741790 + (TATATG)n Simple_repeat Simple_repeat 2 69 0 3 659 22 0 0 0 chr3L 9802288 9802310 -14741247 + AT_rich Low_complexity Low_complexity 1 22 0 3 659 351 132 0 0 chr3L 9803197 9803250 -14740307 - DNAREP1_DM LINE Penelope 0 594 542 3 659 26 30 0 0 chr3L 9803280 9803313 -14740244 + AT_rich Low_complexity Low_complexity 1 33 0 3 659 27 29 0 0 chr3L 9804643 9804677 -14738880 + AT_rich Low_complexity Low_complexity 1 34 0 3 659 264 250 0 0 chr3L 9804912 9804968 -14738589 + (TTCGGG)n Simple_repeat Simple_repeat 5 60 0 3 659 410 122 206 20 chr3L 9805407 9805559 -14737998 + DNAREP1_DM LINE Penelope 244 315 -279 3 659 455 116 0 0 chr3L 9805666 9805735 -14737822 + DNAREP1_DM LINE Penelope 526 594 0 3 659 216 97 0 0 chr3L 9806512 9806543 -14737014 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 659 234 0 0 0 chr3L 9806739 9806765 -14736792 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 659 285 29 0 0 chr3L 9807093 9807127 -14736430 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 659 227 31 31 0 chr3L 9807273 9807305 -14736252 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 659 201 121 0 0 chr3L 9809038 9809071 -14734486 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 3 659 21 0 0 0 chr3L 9809335 9809356 -14734201 + GC_rich Low_complexity Low_complexity 1 21 0 3 659 273 57 0 0 chr3L 9809500 9809535 -14734022 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 659 22 35 0 0 chr3L 9809846 9809875 -14733682 + AT_rich Low_complexity Low_complexity 1 29 0 3 659 270 73 0 0 chr3L 9810453 9810494 -14733063 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 659 21 36 0 0 chr3L 9810938 9810966 -14732591 + AT_rich Low_complexity Low_complexity 1 28 0 3 659 229 268 0 14 chr3L 9811545 9811617 -14731940 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 659 245 212 47 12 chr3L 9811815 9811901 -14731656 + ROO_I LTR Pao 651 739 -7517 3 659 21 0 0 0 chr3L 9812619 9812640 -14730917 + AT_rich Low_complexity Low_complexity 1 21 0 3 659 21 0 0 0 chr3L 9814043 9814064 -14729493 + AT_rich Low_complexity Low_complexity 1 21 0 3 659 206 159 0 22 chr3L 9815482 9815527 -14728030 + A-rich Low_complexity Low_complexity 2 45 0 3 659 24 0 0 0 chr3L 9817479 9817503 -14726054 + AT_rich Low_complexity Low_complexity 1 24 0 3 659 248 270 11 0 chr3L 9819368 9819457 -14724100 + (CCA)n Simple_repeat Simple_repeat 2 91 0 3 659 213 195 0 0 chr3L 9820487 9820528 -14723029 + (CCG)n Simple_repeat Simple_repeat 2 42 0 3 659 267 79 0 0 chr3L 9822033 9822071 -14721486 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 659 222 91 0 0 chr3L 9823282 9823315 -14720242 + (CAG)n Simple_repeat Simple_repeat 3 35 0 3 659 234 105 0 0 chr3L 9824218 9824256 -14719301 + (CAG)n Simple_repeat Simple_repeat 3 40 0 3 659 200 143 0 58 chr3L 9825343 9825395 -14718162 + (CAG)n Simple_repeat Simple_repeat 1 49 0 3 659 192 40 0 0 chr3L 9825439 9825464 -14718093 + (CAG)n Simple_repeat Simple_repeat 1 25 0 3 659 237 65 0 0 chr3L 9825612 9825643 -14717914 + (CAG)n Simple_repeat Simple_repeat 3 33 0 3 659 180 77 0 0 chr3L 9826142 9826168 -14717389 + (CAA)n Simple_repeat Simple_repeat 1 26 0 3 659 260 91 23 0 chr3L 9826931 9826975 -14716582 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 659 208 216 0 0 chr3L 9829350 9829387 -14714170 + (CTG)n Simple_repeat Simple_repeat 1 37 0 3 659 402 74 0 0 chr3L 9830320 9830374 -14713183 + (CTG)n Simple_repeat Simple_repeat 1 54 0 3 660 582 114 0 0 chr3L 9830444 9830532 -14713025 + (CTG)n Simple_repeat Simple_repeat 2 89 0 3 660 26 30 0 0 chr3L 9831866 9831899 -14711658 + AT_rich Low_complexity Low_complexity 1 33 0 3 660 247 200 0 51 chr3L 9833833 9833912 -14709645 - ROO_I LTR Pao -7524 732 658 3 660 372 130 0 0 chr3L 9834003 9834072 -14709485 + (CTG)n Simple_repeat Simple_repeat 1 69 0 3 660 317 159 0 0 chr3L 9839517 9839630 -14703927 + (TATATG)n Simple_repeat Simple_repeat 1 113 0 3 660 186 133 0 0 chr3L 9842024 9842054 -14701503 + (A)n Simple_repeat Simple_repeat 1 30 0 3 660 185 108 0 26 chr3L 9843220 9843258 -14700299 + (CAA)n Simple_repeat Simple_repeat 3 39 0 3 660 186 71 0 0 chr3L 9845072 9845100 -14698457 + (CACAG)n Simple_repeat Simple_repeat 2 29 0 3 660 195 42 0 0 chr3L 9845181 9845205 -14698352 + (AACTG)n Simple_repeat Simple_repeat 3 26 0 3 660 208 277 0 15 chr3L 9845616 9845682 -14697875 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 660 26 0 0 0 chr3L 9848503 9848529 -14695028 + AT_rich Low_complexity Low_complexity 1 26 0 3 660 27 49 0 0 chr3L 9848654 9848695 -14694862 + AT_rich Low_complexity Low_complexity 1 41 0 3 660 24 32 0 0 chr3L 9849594 9849625 -14693932 + AT_rich Low_complexity Low_complexity 1 31 0 3 660 189 121 0 0 chr3L 9851000 9851033 -14692524 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 660 30 59 0 0 chr3L 9853051 9853102 -14690455 + AT_rich Low_complexity Low_complexity 1 51 0 3 660 183 139 0 0 chr3L 9858343 9858379 -14685178 + (CAA)n Simple_repeat Simple_repeat 3 38 0 3 660 27 0 0 0 chr3L 9859041 9859068 -14684489 + AT_rich Low_complexity Low_complexity 1 27 0 3 660 198 103 0 0 chr3L 9859347 9859376 -14684181 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 660 22 0 0 0 chr3L 9860183 9860205 -14683352 + AT_rich Low_complexity Low_complexity 1 22 0 3 660 290 361 0 0 chr3L 9861389 9861533 -14682024 + (CGA)n Simple_repeat Simple_repeat 1 144 0 3 660 264 170 0 0 chr3L 9861612 9861665 -14681892 + (ATG)n Simple_repeat Simple_repeat 3 55 0 3 660 317 347 0 0 chr3L 9862917 9863041 -14680516 + (CGA)n Simple_repeat Simple_repeat 2 125 0 3 660 202 209 0 0 chr3L 9864736 9864779 -14678778 + (CGATA)n Simple_repeat Simple_repeat 5 47 0 3 660 204 40 0 0 chr3L 9866440 9866465 -14677092 + (T)n Simple_repeat Simple_repeat 1 25 0 3 660 231 36 0 0 chr3L 9867025 9867053 -14676504 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 3 660 237 139 0 0 chr3L 9869327 9869370 -14674187 + (CAT)n Simple_repeat Simple_repeat 3 45 0 3 660 30 45 0 0 chr3L 9869459 9869503 -14674054 + AT_rich Low_complexity Low_complexity 1 44 0 3 660 27 29 0 0 chr3L 9870619 9870653 -14672904 + AT_rich Low_complexity Low_complexity 1 34 0 3 660 201 94 0 0 chr3L 9871062 9871094 -14672463 + (TATAG)n Simple_repeat Simple_repeat 4 35 0 3 660 21 0 0 0 chr3L 9871620 9871641 -14671916 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 27 0 0 0 chr3L 9872865 9872892 -14670665 + AT_rich Low_complexity Low_complexity 1 27 0 3 660 28 29 0 0 chr3L 9873097 9873132 -14670425 + AT_rich Low_complexity Low_complexity 1 35 0 3 660 25 51 0 0 chr3L 9874325 9874364 -14669193 + AT_rich Low_complexity Low_complexity 1 39 0 3 660 22 0 0 0 chr3L 9874536 9874558 -14668999 + GC_rich Low_complexity Low_complexity 1 22 0 3 660 189 74 0 0 chr3L 9875689 9875716 -14667841 + (CAG)n Simple_repeat Simple_repeat 1 27 0 3 660 462 88 0 0 chr3L 9875861 9875929 -14667628 + (CAG)n Simple_repeat Simple_repeat 1 68 0 3 660 200 133 0 62 chr3L 9877813 9877861 -14665696 + CT-rich Low_complexity Low_complexity 5 49 0 3 660 228 67 0 0 chr3L 9877891 9877921 -14665636 + (TTC)n Simple_repeat Simple_repeat 2 31 0 3 660 25 108 0 0 chr3L 9881947 9882049 -14661508 + AT_rich Low_complexity Low_complexity 1 102 0 3 660 23 0 0 0 chr3L 9887659 9887682 -14655875 + AT_rich Low_complexity Low_complexity 1 23 0 3 660 28 29 0 0 chr3L 9888783 9888818 -14654739 + AT_rich Low_complexity Low_complexity 1 35 0 3 660 239 267 0 16 chr3L 9892585 9892646 -14650911 + (TTG)n Simple_repeat Simple_repeat 1 60 0 3 660 21 0 0 0 chr3L 9895850 9895871 -14647686 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 204 167 0 23 chr3L 9896849 9896892 -14646665 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 3 660 21 71 0 0 chr3L 9896988 9897030 -14646527 + AT_rich Low_complexity Low_complexity 1 42 0 3 660 25 0 0 0 chr3L 9897660 9897685 -14645872 + AT_rich Low_complexity Low_complexity 1 25 0 3 660 201 121 0 0 chr3L 9899136 9899169 -14644388 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 660 204 219 0 0 chr3L 9899515 9899556 -14644001 + (TTGG)n Simple_repeat Simple_repeat 3 43 0 3 660 37 23 0 0 chr3L 9901889 9901933 -14641624 + AT_rich Low_complexity Low_complexity 1 44 0 3 660 24 32 0 0 chr3L 9902627 9902658 -14640899 + AT_rich Low_complexity Low_complexity 1 31 0 3 660 21 36 0 0 chr3L 9903310 9903338 -14640219 + AT_rich Low_complexity Low_complexity 1 28 0 3 660 21 0 0 0 chr3L 9903971 9903992 -14639565 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 21 0 0 0 chr3L 9904540 9904561 -14638996 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 28 61 0 0 chr3L 9906087 9906136 -14637421 + AT_rich Low_complexity Low_complexity 1 49 0 3 660 29 0 0 0 chr3L 9907032 9907061 -14636496 + AT_rich Low_complexity Low_complexity 1 29 0 3 660 30 59 0 0 chr3L 9909267 9909318 -14634239 + AT_rich Low_complexity Low_complexity 1 51 0 3 660 291 71 0 0 chr3L 9909744 9909786 -14633771 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 660 180 0 0 0 chr3L 9911948 9911968 -14631589 + (CTGTG)n Simple_repeat Simple_repeat 1 20 0 3 660 222 62 0 0 chr3L 9912951 9912983 -14630574 + (A)n Simple_repeat Simple_repeat 1 32 0 3 660 203 208 21 0 chr3L 9914476 9914524 -14629033 + (TTGG)n Simple_repeat Simple_repeat 4 52 0 3 660 243 61 0 0 chr3L 9914587 9914620 -14628937 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 660 21 0 0 0 chr3L 9914963 9914984 -14628573 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 21 0 0 0 chr3L 9921164 9921185 -14622372 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 231 36 0 0 chr3L 9922458 9922486 -14621071 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 3 660 3722 2 0 2 chr3L 9922822 9923251 -14620306 + ROO_LTR LTR Pao 1 428 0 3 660 4518 3 12 151 chr3L 9923251 9923994 -14619563 + ROO_I LTR Pao 1 640 -7616 3 660 540 116 0 0 chr3L 9923994 9924080 -14619477 + (CAG)n Simple_repeat Simple_repeat 1 86 0 3 660 60120 0 0 0 chr3L 9924080 9931115 -14612442 + ROO_I LTR Pao 1221 8256 0 3 660 3752 2 0 0 chr3L 9931115 9931543 -14612014 + ROO_LTR LTR Pao 1 428 0 3 660 22 0 0 0 chr3L 9931779 9931801 -14611756 + AT_rich Low_complexity Low_complexity 1 22 0 3 660 24 53 0 0 chr3L 9933740 9933778 -14609779 + AT_rich Low_complexity Low_complexity 1 38 0 3 660 21 0 0 0 chr3L 9937042 9937063 -14606494 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 22 35 0 0 chr3L 9939648 9939677 -14603880 + AT_rich Low_complexity Low_complexity 1 29 0 3 660 218 191 0 0 chr3L 9940298 9940340 -14603217 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 660 31 0 0 0 chr3L 9941243 9941274 -14602283 + AT_rich Low_complexity Low_complexity 1 31 0 3 660 232 170 0 21 chr3L 9942483 9942531 -14601026 + (CAG)n Simple_repeat Simple_repeat 2 48 0 3 660 207 69 0 0 chr3L 9942986 9943015 -14600542 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 660 25 31 0 0 chr3L 9947371 9947403 -14596154 + AT_rich Low_complexity Low_complexity 1 32 0 3 660 21 0 0 0 chr3L 9950698 9950719 -14592838 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 248 286 0 0 chr3L 9951070 9951147 -14592410 + T-rich Low_complexity Low_complexity 3 79 0 3 660 28 29 0 0 chr3L 9951297 9951332 -14592225 + AT_rich Low_complexity Low_complexity 1 35 0 3 660 192 77 0 0 chr3L 9951416 9951442 -14592115 + (CTA)n Simple_repeat Simple_repeat 1 26 0 3 660 26 0 0 0 chr3L 9951791 9951817 -14591740 + AT_rich Low_complexity Low_complexity 1 26 0 3 660 219 36 0 0 chr3L 9952779 9952807 -14590750 + (TTA)n Simple_repeat Simple_repeat 2 29 0 3 660 235 26 0 71 chr3L 9953483 9953525 -14590032 + (CTATA)n Simple_repeat Simple_repeat 4 42 0 3 660 264 77 0 0 chr3L 9953665 9953704 -14589853 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 660 189 74 0 0 chr3L 9953928 9953955 -14589602 + (TAAAAA)n Simple_repeat Simple_repeat 5 31 0 3 660 255 167 0 0 chr3L 9954423 9954489 -14589068 + (TTTG)n Simple_repeat Simple_repeat 3 68 0 3 660 21 0 0 0 chr3L 9954594 9954615 -14588942 + AT_rich Low_complexity Low_complexity 1 21 0 3 660 192 152 0 0 chr3L 9956770 9956803 -14586754 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 660 192 158 0 0 chr3L 9957497 9957535 -14586022 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 3 660 201 231 0 0 chr3L 9957871 9957910 -14585647 + (CAA)n Simple_repeat Simple_repeat 2 40 0 3 660 21 36 0 0 chr3L 9958434 9958462 -14585095 + AT_rich Low_complexity Low_complexity 1 28 0 3 660 260 209 31 52 chr3L 9959709 9959805 -14583752 + A-rich Low_complexity Low_complexity 3 96 0 3 661 21 0 0 0 chr3L 9968790 9968811 -14574746 + AT_rich Low_complexity Low_complexity 1 21 0 3 661 206 118 0 0 chr3L 9971812 9971846 -14571711 + (A)n Simple_repeat Simple_repeat 1 34 0 3 661 216 111 0 0 chr3L 9972938 9972974 -14570583 + (A)n Simple_repeat Simple_repeat 1 36 0 3 661 27 29 0 0 chr3L 9974365 9974399 -14569158 + AT_rich Low_complexity Low_complexity 1 34 0 3 661 24 0 0 0 chr3L 9975486 9975510 -14568047 + AT_rich Low_complexity Low_complexity 1 24 0 3 661 23 54 0 0 chr3L 9977060 9977097 -14566460 + AT_rich Low_complexity Low_complexity 1 37 0 3 661 189 159 0 0 chr3L 9977781 9977825 -14565732 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 661 26 64 0 0 chr3L 9980587 9980634 -14562923 + AT_rich Low_complexity Low_complexity 1 47 0 3 661 24 0 0 0 chr3L 9980668 9980692 -14562865 + AT_rich Low_complexity Low_complexity 1 24 0 3 661 195 188 0 0 chr3L 9981355 9981403 -14562154 + (TCTG)n Simple_repeat Simple_repeat 4 51 0 3 661 183 80 0 0 chr3L 9989717 9989742 -14553815 + (G)n Simple_repeat Simple_repeat 1 25 0 3 661 228 143 0 0 chr3L 9991201 9991243 -14552314 + (ATG)n Simple_repeat Simple_repeat 2 43 0 3 661 40 0 0 0 chr3L 9991897 9991937 -14551620 + AT_rich Low_complexity Low_complexity 1 40 0 3 661 22 0 0 0 chr3L 9994641 9994663 -14548894 + AT_rich Low_complexity Low_complexity 1 22 0 3 661 191 36 0 35 chr3L 9997048 9997077 -14546480 + (CCG)n Simple_repeat Simple_repeat 2 29 0 3 661 224 140 40 0 chr3L 10005525 10005575 -14537982 + (TCTCTG)n Simple_repeat Simple_repeat 5 56 0 3 661 204 40 0 0 chr3L 10007114 10007139 -14536418 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 661 209 217 0 21 chr3L 10008825 10008872 -14534685 + (TATG)n Simple_repeat Simple_repeat 1 46 0 3 661 28 29 0 0 chr3L 10009328 10009363 -14534194 + AT_rich Low_complexity Low_complexity 1 35 0 3 661 228 86 0 0 chr3L 10009573 10009608 -14533949 + (CTG)n Simple_repeat Simple_repeat 2 36 0 3 661 216 0 0 0 chr3L 10014976 10015000 -14528557 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 661 36 0 0 0 chr3L 10016471 10016507 -14527050 + AT_rich Low_complexity Low_complexity 1 36 0 3 661 219 36 0 0 chr3L 10017156 10017184 -14526373 + (CAGC)n Simple_repeat Simple_repeat 4 31 0 3 661 318 80 0 0 chr3L 10021460 10021510 -14522047 + (CA)n Simple_repeat Simple_repeat 2 51 0 3 661 231 88 0 0 chr3L 10021721 10021755 -14521802 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 661 27 29 0 0 chr3L 10025047 10025081 -14518476 + AT_rich Low_complexity Low_complexity 1 34 0 3 661 204 154 0 25 chr3L 10025114 10025154 -14518403 + (TG)n Simple_repeat Simple_repeat 1 39 0 3 661 22 35 0 0 chr3L 10026624 10026653 -14516904 + AT_rich Low_complexity Low_complexity 1 29 0 3 661 21 0 0 0 chr3L 10026875 10026896 -14516661 + AT_rich Low_complexity Low_complexity 1 21 0 3 661 219 88 0 0 chr3L 10027939 10027973 -14515584 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 661 25 31 0 0 chr3L 10042045 10042077 -14501480 + AT_rich Low_complexity Low_complexity 1 32 0 3 661 29 0 0 0 chr3L 10045481 10045510 -14498047 + AT_rich Low_complexity Low_complexity 1 29 0 3 661 195 146 0 0 chr3L 10045742 10045783 -14497774 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 661 234 143 0 0 chr3L 10047243 10047292 -14496265 + (CA)n Simple_repeat Simple_repeat 1 49 0 3 661 24 53 0 0 chr3L 10047771 10047809 -14495748 + AT_rich Low_complexity Low_complexity 1 38 0 3 661 21 0 0 0 chr3L 10050109 10050130 -14493427 + AT_rich Low_complexity Low_complexity 1 21 0 3 661 300 143 0 0 chr3L 10050632 10050688 -14492869 + (CAGT)n Simple_repeat Simple_repeat 4 59 0 3 661 21 0 0 0 chr3L 10051026 10051047 -14492510 + AT_rich Low_complexity Low_complexity 1 21 0 3 661 25 0 0 0 chr3L 10051886 10051911 -14491646 + AT_rich Low_complexity Low_complexity 1 25 0 3 661 270 81 0 0 chr3L 10052180 10052217 -14491340 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 661 231 125 0 0 chr3L 10052396 10052436 -14491121 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 661 4584 8 0 0 chr3L 10053269 10053776 -14489781 - DM176_LTR LTR Gypsy 0 507 1 3 661 40763 16 1 9 chr3L 10053779 10060279 -14483278 - DM176_I LTR Gypsy -1 6166 1 3 661 4283 8 0 0 chr3L 10060279 10060786 -14482771 - DM176_LTR LTR Gypsy 0 507 1 3 661 222 274 0 0 chr3L 10064880 10064931 -14478626 + (CACCAT)n Simple_repeat Simple_repeat 3 53 0 3 661 195 129 0 0 chr3L 10065004 10065035 -14478522 + (CAA)n Simple_repeat Simple_repeat 1 31 0 3 661 23 0 0 0 chr3L 10065550 10065573 -14477984 + AT_rich Low_complexity Low_complexity 1 23 0 3 661 25 51 0 0 chr3L 10066323 10066362 -14477195 + AT_rich Low_complexity Low_complexity 1 39 0 3 661 234 62 0 0 chr3L 10067086 10067118 -14476439 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 661 26 0 0 0 chr3L 10067549 10067575 -14475982 + AT_rich Low_complexity Low_complexity 1 26 0 3 661 23 0 0 0 chr3L 10069663 10069686 -14473871 + AT_rich Low_complexity Low_complexity 1 23 0 3 661 186 71 0 0 chr3L 10073563 10073591 -14469966 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 661 215 125 25 0 chr3L 10075065 10075105 -14468452 + (TATG)n Simple_repeat Simple_repeat 4 44 0 3 661 185 108 27 0 chr3L 10078588 10078625 -14464932 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 3 661 21 0 0 0 chr3L 10079755 10079776 -14463781 + AT_rich Low_complexity Low_complexity 1 21 0 3 661 21 0 0 0 chr3L 10080165 10080186 -14463371 + AT_rich Low_complexity Low_complexity 1 21 0 3 661 23 0 0 0 chr3L 10082639 10082662 -14460895 + AT_rich Low_complexity Low_complexity 1 23 0 3 661 25 31 0 0 chr3L 10082921 10082953 -14460604 + AT_rich Low_complexity Low_complexity 1 32 0 3 661 23 33 0 0 chr3L 10088801 10088831 -14454726 + AT_rich Low_complexity Low_complexity 1 30 0 3 661 229 67 0 0 chr3L 10090428 10090458 -14453099 + DNAREP1_DM LINE Penelope 409 438 -156 3 661 21 0 0 0 chr3L 10090530 10090551 -14453006 + AT_rich Low_complexity Low_complexity 1 21 0 3 661 22 0 0 0 chr3L 10091626 10091648 -14451909 + AT_rich Low_complexity Low_complexity 1 22 0 3 662 29 60 0 0 chr3L 10094526 10094576 -14448981 + AT_rich Low_complexity Low_complexity 1 50 0 3 662 21 0 0 0 chr3L 10095368 10095389 -14448168 + AT_rich Low_complexity Low_complexity 1 21 0 3 662 227 182 0 0 chr3L 10097850 10097894 -14445663 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 662 22 35 0 0 chr3L 10098619 10098648 -14444909 + AT_rich Low_complexity Low_complexity 1 29 0 3 662 38 51 0 0 chr3L 10099421 10099480 -14444077 + AT_rich Low_complexity Low_complexity 1 59 0 3 662 46 45 0 0 chr3L 10099552 10099619 -14443938 + AT_rich Low_complexity Low_complexity 1 67 0 3 662 22 0 0 0 chr3L 10101802 10101824 -14441733 + AT_rich Low_complexity Low_complexity 1 22 0 3 662 22 35 0 0 chr3L 10103186 10103215 -14440342 + AT_rich Low_complexity Low_complexity 1 29 0 3 662 26 30 0 0 chr3L 10103729 10103762 -14439795 + AT_rich Low_complexity Low_complexity 1 33 0 3 662 28 0 0 0 chr3L 10104456 10104484 -14439073 + AT_rich Low_complexity Low_complexity 1 28 0 3 662 23 0 0 0 chr3L 10106256 10106279 -14437278 + AT_rich Low_complexity Low_complexity 1 23 0 3 662 21 0 0 0 chr3L 10106364 10106385 -14437172 + AT_rich Low_complexity Low_complexity 1 21 0 3 662 204 40 0 0 chr3L 10106965 10106990 -14436567 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 662 183 162 0 0 chr3L 10107607 10107644 -14435913 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 662 243 88 0 0 chr3L 10108305 10108339 -14435218 + (GAGTG)n Simple_repeat Simple_repeat 5 38 0 3 662 39 0 0 0 chr3L 10111660 10111699 -14431858 + AT_rich Low_complexity Low_complexity 1 39 0 3 662 23 33 0 0 chr3L 10116435 10116465 -14427092 + AT_rich Low_complexity Low_complexity 1 30 0 3 662 22 56 0 0 chr3L 10118087 10118123 -14425434 + AT_rich Low_complexity Low_complexity 1 36 0 3 662 243 61 0 0 chr3L 10119395 10119428 -14424129 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 662 200 170 38 0 chr3L 10123266 10123319 -14420238 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 662 26 50 0 0 chr3L 10123793 10123833 -14419724 + AT_rich Low_complexity Low_complexity 1 40 0 3 662 21 0 0 0 chr3L 10124796 10124817 -14418740 + AT_rich Low_complexity Low_complexity 1 21 0 3 662 25 51 0 0 chr3L 10128476 10128515 -14415042 + AT_rich Low_complexity Low_complexity 1 39 0 3 662 25 0 0 0 chr3L 10128524 10128549 -14415008 + AT_rich Low_complexity Low_complexity 1 25 0 3 662 22 0 0 0 chr3L 10133652 10133674 -14409883 + AT_rich Low_complexity Low_complexity 1 22 0 3 662 207 0 0 0 chr3L 10136302 10136325 -14407232 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 662 23 78 0 0 chr3L 10137132 10137183 -14406374 + AT_rich Low_complexity Low_complexity 1 51 0 3 662 210 128 0 0 chr3L 10137344 10137383 -14406174 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 662 210 91 0 0 chr3L 10139126 10139159 -14404398 + (T)n Simple_repeat Simple_repeat 1 33 0 3 662 203 250 0 0 chr3L 10140916 10140964 -14402593 + (CATATA)n Simple_repeat Simple_repeat 6 53 0 3 662 21 0 0 0 chr3L 10146540 10146561 -14396996 + AT_rich Low_complexity Low_complexity 1 21 0 3 662 210 254 0 0 chr3L 10146900 10146959 -14396598 + A-rich Low_complexity Low_complexity 2 60 0 3 662 21 57 0 0 chr3L 10160999 10161034 -14382523 + AT_rich Low_complexity Low_complexity 1 35 0 3 662 24 0 0 0 chr3L 10168082 10168106 -14375451 + AT_rich Low_complexity Low_complexity 1 24 0 3 662 21 36 0 0 chr3L 10168585 10168613 -14374944 + AT_rich Low_complexity Low_complexity 1 28 0 3 662 185 0 40 0 chr3L 10172074 10172099 -14371458 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 662 207 0 0 0 chr3L 10173252 10173275 -14370282 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 662 211 296 19 38 chr3L 10173624 10173782 -14369775 + A-rich Low_complexity Low_complexity 5 159 0 3 662 23 0 0 0 chr3L 10174925 10174948 -14368609 + AT_rich Low_complexity Low_complexity 1 23 0 3 662 195 129 0 0 chr3L 10175977 10176008 -14367549 + (CTG)n Simple_repeat Simple_repeat 2 32 0 3 662 23 68 0 0 chr3L 10177178 10177222 -14366335 + AT_rich Low_complexity Low_complexity 1 44 0 3 662 23 33 0 0 chr3L 10177356 10177386 -14366171 + AT_rich Low_complexity Low_complexity 1 30 0 3 662 204 125 0 0 chr3L 10179048 10179080 -14364477 + (CA)n Simple_repeat Simple_repeat 2 33 0 3 662 29 47 0 0 chr3L 10179966 10180009 -14363548 + AT_rich Low_complexity Low_complexity 1 43 0 3 662 29 28 0 0 chr3L 10182099 10182135 -14361422 + AT_rich Low_complexity Low_complexity 1 36 0 3 662 197 132 0 26 chr3L 10183413 10183452 -14360105 + (TAAA)n Simple_repeat Simple_repeat 4 41 0 3 662 266 0 29 0 chr3L 10186577 10186611 -14356946 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 3 662 202 279 0 14 chr3L 10187165 10187234 -14356323 + GA-rich Low_complexity Low_complexity 1 68 0 3 662 231 277 11 11 chr3L 10187267 10187362 -14356195 + CT-rich Low_complexity Low_complexity 2 96 0 3 662 210 182 14 43 chr3L 10187810 10187879 -14355678 + (TTG)n Simple_repeat Simple_repeat 2 68 0 3 662 228 167 0 0 chr3L 10188036 10188084 -14355473 + (TCG)n Simple_repeat Simple_repeat 2 49 0 3 662 264 188 0 0 chr3L 10188122 10188186 -14355371 + (CAT)n Simple_repeat Simple_repeat 1 64 0 3 662 302 278 12 24 chr3L 10188286 10188452 -14355105 + (TTG)n Simple_repeat Simple_repeat 2 165 0 3 662 203 179 0 0 chr3L 10188949 10188988 -14354569 + (CAT)n Simple_repeat Simple_repeat 2 40 0 3 662 207 200 0 0 chr3L 10189027 10189072 -14354485 + (CAT)n Simple_repeat Simple_repeat 2 46 0 3 662 231 146 0 0 chr3L 10189342 10189383 -14354174 + (CAT)n Simple_repeat Simple_repeat 3 43 0 3 662 263 303 0 0 chr3L 10189914 10189990 -14353567 + (CAG)n Simple_repeat Simple_repeat 2 77 0 3 662 319 211 0 32 chr3L 10190260 10190353 -14353204 - ROO_I LTR Pao -7526 730 641 3 662 251 47 0 65 chr3L 10191566 10191612 -14351945 + (TTC)n Simple_repeat Simple_repeat 2 44 0 3 662 251 114 0 22 chr3L 10193404 10193449 -14350108 + (GTTTG)n Simple_repeat Simple_repeat 1 44 0 3 662 240 59 0 0 chr3L 10194790 10194824 -14348733 + (ATTCG)n Simple_repeat Simple_repeat 4 37 0 3 662 235 233 0 0 chr3L 10196433 10196493 -14347064 + A-rich Low_complexity Low_complexity 1 60 0 3 662 21 0 0 0 chr3L 10197236 10197257 -14346300 + AT_rich Low_complexity Low_complexity 1 21 0 3 662 33 25 0 0 chr3L 10198604 10198644 -14344913 + AT_rich Low_complexity Low_complexity 1 40 0 3 662 189 121 0 0 chr3L 10203514 10203547 -14340010 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 662 198 0 0 0 chr3L 10208262 10208284 -14335273 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 662 30 27 0 0 chr3L 10218476 10218513 -14325044 + AT_rich Low_complexity Low_complexity 1 37 0 3 662 29 60 0 0 chr3L 10218772 10218822 -14324735 + AT_rich Low_complexity Low_complexity 1 50 0 3 662 22 0 0 0 chr3L 10219789 10219811 -14323746 + AT_rich Low_complexity Low_complexity 1 22 0 3 662 21 36 0 0 chr3L 10223218 10223246 -14320311 + AT_rich Low_complexity Low_complexity 1 28 0 3 663 21 82 0 0 chr3L 10224844 10224893 -14318664 + AT_rich Low_complexity Low_complexity 1 49 0 3 663 22 56 0 0 chr3L 10226740 10226776 -14316781 + AT_rich Low_complexity Low_complexity 1 36 0 3 663 225 65 0 0 chr3L 10228769 10228800 -14314757 + (T)n Simple_repeat Simple_repeat 1 31 0 3 663 25 31 0 0 chr3L 10231743 10231775 -14311782 + AT_rich Low_complexity Low_complexity 1 32 0 3 663 22 70 0 0 chr3L 10233369 10233412 -14310145 + AT_rich Low_complexity Low_complexity 1 43 0 3 663 24 0 0 0 chr3L 10234238 10234262 -14309295 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 255 61 0 0 chr3L 10234982 10235015 -14308542 + (ATG)n Simple_repeat Simple_repeat 3 35 0 3 663 42 57 0 0 chr3L 10235451 10235521 -14308036 + AT_rich Low_complexity Low_complexity 1 70 0 3 663 21 0 0 0 chr3L 10236702 10236723 -14306834 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 31 0 0 0 chr3L 10238205 10238236 -14305321 + AT_rich Low_complexity Low_complexity 1 31 0 3 663 35 0 0 0 chr3L 10239226 10239261 -14304296 + AT_rich Low_complexity Low_complexity 1 35 0 3 663 24 0 0 0 chr3L 10239910 10239934 -14303623 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 21 36 0 0 chr3L 10245836 10245864 -14297693 + AT_rich Low_complexity Low_complexity 1 28 0 3 663 27 49 0 0 chr3L 10245953 10245994 -14297563 + AT_rich Low_complexity Low_complexity 1 41 0 3 663 24 0 0 0 chr3L 10247065 10247089 -14296468 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 192 40 0 0 chr3L 10247550 10247575 -14295982 + (GA)n Simple_repeat Simple_repeat 1 25 0 3 663 180 0 0 0 chr3L 10247800 10247820 -14295737 + (A)n Simple_repeat Simple_repeat 1 20 0 3 663 22 0 0 0 chr3L 10249447 10249469 -14294088 + AT_rich Low_complexity Low_complexity 1 22 0 3 663 21 71 0 0 chr3L 10260389 10260431 -14283126 + AT_rich Low_complexity Low_complexity 1 42 0 3 663 23 0 0 0 chr3L 10261279 10261302 -14282255 + AT_rich Low_complexity Low_complexity 1 23 0 3 663 21 0 0 0 chr3L 10264759 10264780 -14278777 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 204 217 0 0 chr3L 10264987 10265033 -14278524 + GA-rich Low_complexity Low_complexity 1 46 0 3 663 201 219 15 45 chr3L 10265385 10265452 -14278105 + A-rich Low_complexity Low_complexity 2 66 0 3 663 29 0 0 0 chr3L 10265856 10265885 -14277672 + AT_rich Low_complexity Low_complexity 1 29 0 3 663 25 0 0 0 chr3L 10268946 10268971 -14274586 + AT_rich Low_complexity Low_complexity 1 25 0 3 663 188 86 0 28 chr3L 10270344 10270380 -14273177 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 663 21 0 0 0 chr3L 10271260 10271281 -14272276 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 33 25 0 0 chr3L 10273123 10273163 -14270394 + AT_rich Low_complexity Low_complexity 1 40 0 3 663 21 0 0 0 chr3L 10278300 10278321 -14265236 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 29 0 0 0 chr3L 10278509 10278538 -14265019 + AT_rich Low_complexity Low_complexity 1 29 0 3 663 213 39 0 0 chr3L 10278562 10278588 -14264969 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 663 35 0 0 0 chr3L 10280015 10280050 -14263507 + AT_rich Low_complexity Low_complexity 1 35 0 3 663 203 250 0 0 chr3L 10280652 10280704 -14262853 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 663 30 69 0 0 chr3L 10281024 10281082 -14262475 + AT_rich Low_complexity Low_complexity 1 58 0 3 663 24 0 0 0 chr3L 10281897 10281921 -14261636 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 33 80 0 0 chr3L 10282956 10283031 -14260526 + AT_rich Low_complexity Low_complexity 1 75 0 3 663 226 204 0 0 chr3L 10284508 10284552 -14259005 + (CAG)n Simple_repeat Simple_repeat 3 46 0 3 663 21 71 0 0 chr3L 10285212 10285254 -14258303 + AT_rich Low_complexity Low_complexity 1 42 0 3 663 35 54 0 0 chr3L 10285850 10285906 -14257651 + AT_rich Low_complexity Low_complexity 1 56 0 3 663 24 0 0 0 chr3L 10286323 10286347 -14257210 + AT_rich Low_complexity Low_complexity 1 24 0 3 663 276 100 0 0 chr3L 10286848 10286888 -14256669 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 663 228 237 0 0 chr3L 10287265 10287324 -14256233 + (TG)n Simple_repeat Simple_repeat 2 60 0 3 663 264 30 0 0 chr3L 10292195 10292228 -14251329 + (CA)n Simple_repeat Simple_repeat 1 33 0 3 663 28 29 0 0 chr3L 10293263 10293298 -14250259 + AT_rich Low_complexity Low_complexity 1 35 0 3 663 21 57 0 0 chr3L 10294456 10294491 -14249066 + AT_rich Low_complexity Low_complexity 1 35 0 3 663 24 32 0 0 chr3L 10295791 10295822 -14247735 + AT_rich Low_complexity Low_complexity 1 31 0 3 663 231 270 0 13 chr3L 10296074 10296149 -14247408 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 663 22 0 0 0 chr3L 10296944 10296966 -14246591 + AT_rich Low_complexity Low_complexity 1 22 0 3 663 214 95 0 45 chr3L 10297029 10297073 -14246484 + (CAA)n Simple_repeat Simple_repeat 3 44 0 3 663 198 71 0 0 chr3L 10297446 10297474 -14246083 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 663 246 105 0 0 chr3L 10297752 10297790 -14245767 + (CAG)n Simple_repeat Simple_repeat 1 38 0 3 663 195 69 0 0 chr3L 10301289 10301318 -14242239 + (GA)n Simple_repeat Simple_repeat 2 30 0 3 663 27 29 0 0 chr3L 10302292 10302326 -14241231 + AT_rich Low_complexity Low_complexity 1 34 0 3 663 180 77 0 0 chr3L 10303874 10303900 -14239657 + (CAGA)n Simple_repeat Simple_repeat 1 26 0 3 663 249 146 0 0 chr3L 10306688 10306736 -14236821 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 663 22 56 0 0 chr3L 10307845 10307881 -14235676 + AT_rich Low_complexity Low_complexity 1 36 0 3 663 207 200 0 0 chr3L 10309796 10309841 -14233716 + A-rich Low_complexity Low_complexity 1 45 0 3 663 30 0 0 0 chr3L 10313026 10313056 -14230501 + AT_rich Low_complexity Low_complexity 1 30 0 3 663 27 73 0 0 chr3L 10313716 10313771 -14229786 + AT_rich Low_complexity Low_complexity 1 55 0 3 663 21 36 0 0 chr3L 10317737 10317765 -14225792 + AT_rich Low_complexity Low_complexity 1 28 0 3 663 22 56 0 0 chr3L 10317811 10317847 -14225710 + AT_rich Low_complexity Low_complexity 1 36 0 3 663 255 146 0 0 chr3L 10318763 10318818 -14224739 + (TC)n Simple_repeat Simple_repeat 2 56 0 3 663 252 0 0 0 chr3L 10320232 10320260 -14223297 + (CAGC)n Simple_repeat Simple_repeat 4 31 0 3 663 68 42 0 0 chr3L 10320861 10320957 -14222600 + AT_rich Low_complexity Low_complexity 1 96 0 3 663 26 0 0 0 chr3L 10321019 10321045 -14222512 + AT_rich Low_complexity Low_complexity 1 26 0 3 663 551 62 12 0 chr3L 10321250 10321330 -14222227 + (TA)n Simple_repeat Simple_repeat 1 81 0 3 663 211 244 0 0 chr3L 10322276 10322321 -14221236 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 663 24 32 0 0 chr3L 10323320 10323351 -14220206 + AT_rich Low_complexity Low_complexity 1 31 0 3 663 25 31 0 0 chr3L 10327786 10327818 -14215739 + AT_rich Low_complexity Low_complexity 1 32 0 3 663 207 250 0 0 chr3L 10329014 10329066 -14214491 + (GCTG)n Simple_repeat Simple_repeat 4 55 0 3 663 28 29 0 0 chr3L 10329232 10329267 -14214290 + AT_rich Low_complexity Low_complexity 1 35 0 3 663 222 143 0 0 chr3L 10331706 10331755 -14211802 + (A)n Simple_repeat Simple_repeat 1 49 0 3 663 29 0 0 0 chr3L 10332577 10332606 -14210951 + AT_rich Low_complexity Low_complexity 1 29 0 3 663 234 62 0 0 chr3L 10334189 10334221 -14209336 + (A)n Simple_repeat Simple_repeat 1 32 0 3 663 180 0 0 0 chr3L 10335519 10335539 -14208018 + (T)n Simple_repeat Simple_repeat 1 20 0 3 663 21 0 0 0 chr3L 10336721 10336742 -14206815 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 23 78 0 0 chr3L 10337367 10337418 -14206139 + AT_rich Low_complexity Low_complexity 1 51 0 3 663 213 39 0 0 chr3L 10339309 10339335 -14204222 + (CAT)n Simple_repeat Simple_repeat 3 28 0 3 663 222 136 0 0 chr3L 10341366 10341410 -14202147 + (CAGGC)n Simple_repeat Simple_repeat 2 45 0 3 663 279 114 0 0 chr3L 10343265 10343309 -14200248 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 663 208 158 26 0 chr3L 10344290 10344328 -14199229 + (CAGTC)n Simple_repeat Simple_repeat 4 42 0 3 663 24 32 0 0 chr3L 10345198 10345229 -14198328 + AT_rich Low_complexity Low_complexity 1 31 0 3 663 210 128 0 0 chr3L 10345394 10345433 -14198124 + (T)n Simple_repeat Simple_repeat 1 39 0 3 663 27 0 0 0 chr3L 10346000 10346027 -14197530 + AT_rich Low_complexity Low_complexity 1 27 0 3 663 21 0 0 0 chr3L 10346658 10346679 -14196878 + AT_rich Low_complexity Low_complexity 1 21 0 3 663 22 0 0 0 chr3L 10347827 10347849 -14195708 + AT_rich Low_complexity Low_complexity 1 22 0 3 663 216 0 0 0 chr3L 10347906 10347930 -14195627 + (CTG)n Simple_repeat Simple_repeat 2 25 0 3 663 25 0 0 0 chr3L 10348157 10348182 -14195375 + AT_rich Low_complexity Low_complexity 1 25 0 3 663 210 259 0 0 chr3L 10349484 10349538 -14194019 + (CAA)n Simple_repeat Simple_repeat 1 54 0 3 663 34 24 0 0 chr3L 10349823 10349864 -14193693 + AT_rich Low_complexity Low_complexity 1 41 0 3 663 26 50 0 0 chr3L 10349908 10349948 -14193609 + AT_rich Low_complexity Low_complexity 1 40 0 3 663 22 56 0 0 chr3L 10350332 10350368 -14193189 + AT_rich Low_complexity Low_complexity 1 36 0 3 663 285 29 0 0 chr3L 10351109 10351143 -14192414 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 663 183 42 0 0 chr3L 10353480 10353504 -14190053 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 663 201 156 0 0 chr3L 10353562 10353594 -14189963 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 664 30 0 0 0 chr3L 10355052 10355082 -14188475 + AT_rich Low_complexity Low_complexity 1 30 0 3 664 183 129 0 0 chr3L 10356618 10356649 -14186908 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 664 23 33 0 0 chr3L 10356760 10356790 -14186767 + AT_rich Low_complexity Low_complexity 1 30 0 3 664 189 74 0 0 chr3L 10358178 10358205 -14185352 + (A)n Simple_repeat Simple_repeat 1 27 0 3 664 22 35 0 0 chr3L 10358683 10358712 -14184845 + AT_rich Low_complexity Low_complexity 1 29 0 3 664 23 0 0 0 chr3L 10359849 10359872 -14183685 + AT_rich Low_complexity Low_complexity 1 23 0 3 664 22 70 0 0 chr3L 10360626 10360669 -14182888 + AT_rich Low_complexity Low_complexity 1 43 0 3 664 267 31 0 0 chr3L 10361354 10361386 -14182171 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 664 21 0 0 0 chr3L 10362804 10362825 -14180732 + AT_rich Low_complexity Low_complexity 1 21 0 3 664 22 0 0 0 chr3L 10363238 10363260 -14180297 + AT_rich Low_complexity Low_complexity 1 22 0 3 664 213 108 0 0 chr3L 10363613 10363650 -14179907 + (GATTG)n Simple_repeat Simple_repeat 5 41 0 3 664 195 139 0 0 chr3L 10363711 10363747 -14179810 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 3 664 21 0 0 0 chr3L 10364115 10364136 -14179421 + AT_rich Low_complexity Low_complexity 1 21 0 3 664 26 64 0 0 chr3L 10365696 10365743 -14177814 + AT_rich Low_complexity Low_complexity 1 47 0 3 664 22 70 0 0 chr3L 10366788 10366831 -14176726 + AT_rich Low_complexity Low_complexity 1 43 0 3 664 28 48 0 0 chr3L 10367249 10367291 -14176266 + AT_rich Low_complexity Low_complexity 1 42 0 3 664 209 204 0 0 chr3L 10368383 10368432 -14175125 + T-rich Low_complexity Low_complexity 1 49 0 3 664 21 36 0 0 chr3L 10371341 10371369 -14172188 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 249 33 0 0 chr3L 10371645 10371675 -14171882 + (TATG)n Simple_repeat Simple_repeat 3 32 0 3 664 25 31 0 0 chr3L 10371900 10371932 -14171625 + AT_rich Low_complexity Low_complexity 1 32 0 3 664 25 0 0 0 chr3L 10372217 10372242 -14171315 + AT_rich Low_complexity Low_complexity 1 25 0 3 664 27 29 0 0 chr3L 10373106 10373140 -14170417 + AT_rich Low_complexity Low_complexity 1 34 0 3 664 23 33 0 0 chr3L 10376445 10376475 -14167082 + AT_rich Low_complexity Low_complexity 1 30 0 3 664 24 32 0 0 chr3L 10377556 10377587 -14165970 + AT_rich Low_complexity Low_complexity 1 31 0 3 664 26 50 0 0 chr3L 10377681 10377721 -14165836 + AT_rich Low_complexity Low_complexity 1 40 0 3 664 200 35 35 0 chr3L 10377932 10377961 -14165596 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 3 664 185 0 40 0 chr3L 10378225 10378250 -14165307 + (TATAA)n Simple_repeat Simple_repeat 1 26 0 3 664 210 105 0 0 chr3L 10378591 10378629 -14164928 + (T)n Simple_repeat Simple_repeat 1 38 0 3 664 323 137 0 14 chr3L 10378784 10378858 -14164699 + (TTG)n Simple_repeat Simple_repeat 1 73 0 3 664 225 163 0 0 chr3L 10379174 10379223 -14164334 + (CAA)n Simple_repeat Simple_repeat 1 49 0 3 664 213 81 0 51 chr3L 10379771 10379810 -14163747 + (CAATC)n Simple_repeat Simple_repeat 4 40 0 3 664 212 196 0 21 chr3L 10379857 10379904 -14163653 + A-rich Low_complexity Low_complexity 4 49 0 3 664 357 82 0 0 chr3L 10380063 10380112 -14163445 + (GCTG)n Simple_repeat Simple_repeat 1 49 0 3 664 21 36 0 0 chr3L 10380484 10380512 -14163045 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 237 270 54 0 chr3L 10381423 10381497 -14162060 + TART_B1 LINE telomeric 151 228 -10426 3 664 213 154 0 0 chr3L 10381820 10381859 -14161698 + (CTG)n Simple_repeat Simple_repeat 3 41 0 3 664 21 36 0 0 chr3L 10382011 10382039 -14161518 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 238 227 40 13 chr3L 10383216 10383292 -14160265 + (CTG)n Simple_repeat Simple_repeat 3 80 0 3 664 23 0 0 0 chr3L 10383450 10383473 -14160084 + AT_rich Low_complexity Low_complexity 1 23 0 3 664 209 196 0 21 chr3L 10384567 10384614 -14158943 + (CTG)n Simple_repeat Simple_repeat 3 48 0 3 664 180 125 0 0 chr3L 10386180 10386212 -14157345 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 664 29 28 0 0 chr3L 10386229 10386265 -14157292 + AT_rich Low_complexity Low_complexity 1 36 0 3 664 35 41 0 0 chr3L 10387317 10387366 -14156191 + AT_rich Low_complexity Low_complexity 1 49 0 3 664 21 36 0 0 chr3L 10389847 10389875 -14153682 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 195 42 0 0 chr3L 10390969 10390993 -14152564 + (T)n Simple_repeat Simple_repeat 1 24 0 3 664 33 25 0 0 chr3L 10392062 10392102 -14151455 + AT_rich Low_complexity Low_complexity 1 40 0 3 664 21 36 0 0 chr3L 10393377 10393405 -14150152 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 21 36 0 0 chr3L 10393840 10393868 -14149689 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 33 25 0 0 chr3L 10393957 10393997 -14149560 + AT_rich Low_complexity Low_complexity 1 40 0 3 664 21 0 0 0 chr3L 10396477 10396498 -14147059 + AT_rich Low_complexity Low_complexity 1 21 0 3 664 189 74 0 0 chr3L 10397517 10397544 -14146013 + (CAT)n Simple_repeat Simple_repeat 3 29 0 3 664 30 27 0 0 chr3L 10398109 10398146 -14145411 + AT_rich Low_complexity Low_complexity 1 37 0 3 664 219 69 0 0 chr3L 10398870 10398899 -14144658 + (GCTTG)n Simple_repeat Simple_repeat 4 32 0 3 664 245 75 25 0 chr3L 10399315 10399355 -14144202 + (ATG)n Simple_repeat Simple_repeat 1 41 0 3 664 218 185 37 0 chr3L 10400498 10400552 -14143005 + A-rich Low_complexity Low_complexity 5 60 0 3 664 225 0 0 0 chr3L 10402430 10402455 -14141102 + (T)n Simple_repeat Simple_repeat 1 25 0 3 664 26 30 0 0 chr3L 10403083 10403116 -14140441 + AT_rich Low_complexity Low_complexity 1 33 0 3 664 21 36 0 0 chr3L 10403284 10403312 -14140245 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 23 101 0 0 chr3L 10404981 10405060 -14138497 + AT_rich Low_complexity Low_complexity 1 79 0 3 664 19928 1 0 0 chr3L 10408100 10410405 -14133152 - DOC LINE Jockey 0 4725 2422 3 664 237 182 0 0 chr3L 10411837 10411892 -14131665 + (TTGG)n Simple_repeat Simple_repeat 3 57 0 3 664 32 0 0 0 chr3L 10412396 10412428 -14131129 + AT_rich Low_complexity Low_complexity 1 32 0 3 664 26 0 0 0 chr3L 10412768 10412794 -14130763 + AT_rich Low_complexity Low_complexity 1 26 0 3 664 189 159 0 0 chr3L 10413302 10413346 -14130211 + A-rich Low_complexity Low_complexity 1 44 0 3 664 23 0 0 0 chr3L 10414387 10414410 -14129147 + AT_rich Low_complexity Low_complexity 1 23 0 3 664 205 86 0 28 chr3L 10414806 10414842 -14128715 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 664 234 0 0 0 chr3L 10414971 10414997 -14128560 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 664 23 33 0 0 chr3L 10420080 10420110 -14123447 + AT_rich Low_complexity Low_complexity 1 30 0 3 664 22 0 0 0 chr3L 10420338 10420360 -14123197 + AT_rich Low_complexity Low_complexity 1 22 0 3 664 22 0 0 0 chr3L 10421435 10421457 -14122100 + AT_rich Low_complexity Low_complexity 1 22 0 3 664 185 215 0 41 chr3L 10422338 10422435 -14121122 + (CAA)n Simple_repeat Simple_repeat 3 95 0 3 664 27 0 0 0 chr3L 10429145 10429172 -14114385 + AT_rich Low_complexity Low_complexity 1 27 0 3 664 44 46 0 0 chr3L 10430019 10430084 -14113473 + AT_rich Low_complexity Low_complexity 1 65 0 3 664 21 36 0 0 chr3L 10430972 10431000 -14112557 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 209 216 0 0 chr3L 10431344 10431381 -14112176 + (TTG)n Simple_repeat Simple_repeat 3 39 0 3 664 187 115 58 0 chr3L 10431793 10431845 -14111712 + T-rich Low_complexity Low_complexity 6 60 0 3 664 382 92 0 38 chr3L 10432365 10432444 -14111113 - DNAREP1_DM LINE Penelope -322 272 197 3 664 21 0 0 0 chr3L 10432503 10432524 -14111033 + AT_rich Low_complexity Low_complexity 1 21 0 3 664 29 0 0 0 chr3L 10432789 10432818 -14110739 + AT_rich Low_complexity Low_complexity 1 29 0 3 664 23 0 0 0 chr3L 10433666 10433689 -14109868 + AT_rich Low_complexity Low_complexity 1 23 0 3 664 25 31 0 0 chr3L 10434639 10434671 -14108886 + AT_rich Low_complexity Low_complexity 1 32 0 3 664 207 200 0 0 chr3L 10435074 10435119 -14108438 + A-rich Low_complexity Low_complexity 1 45 0 3 664 25 51 0 0 chr3L 10436128 10436167 -14107390 + AT_rich Low_complexity Low_complexity 1 39 0 3 664 21 0 0 0 chr3L 10436931 10436952 -14106605 + AT_rich Low_complexity Low_complexity 1 21 0 3 664 198 191 0 0 chr3L 10437482 10437524 -14106033 + (CAA)n Simple_repeat Simple_repeat 2 43 0 3 664 24 32 0 0 chr3L 10438868 10438899 -14104658 + AT_rich Low_complexity Low_complexity 1 31 0 3 664 220 188 0 45 chr3L 10439137 10439204 -14104353 + A-rich Low_complexity Low_complexity 2 65 0 3 664 34 24 0 0 chr3L 10439679 10439720 -14103837 + AT_rich Low_complexity Low_complexity 1 41 0 3 664 213 39 0 0 chr3L 10440012 10440038 -14103519 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 664 21 36 0 0 chr3L 10440420 10440448 -14103109 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 206 261 43 0 chr3L 10440704 10440773 -14102784 + (ATTCG)n Simple_repeat Simple_repeat 5 76 0 3 664 21 36 0 0 chr3L 10441317 10441345 -14102212 + AT_rich Low_complexity Low_complexity 1 28 0 3 664 26 30 0 0 chr3L 10444292 10444325 -14099232 + AT_rich Low_complexity Low_complexity 1 33 0 3 664 32 0 0 0 chr3L 10445625 10445657 -14097900 + AT_rich Low_complexity Low_complexity 1 32 0 3 664 22 0 0 0 chr3L 10446786 10446808 -14096749 + AT_rich Low_complexity Low_complexity 1 22 0 3 664 195 114 0 0 chr3L 10447216 10447251 -14096306 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 664 26 0 0 0 chr3L 10447896 10447922 -14095635 + AT_rich Low_complexity Low_complexity 1 26 0 3 664 23 0 0 0 chr3L 10448644 10448667 -14094890 + AT_rich Low_complexity Low_complexity 1 23 0 3 664 180 243 0 0 chr3L 10449491 10449565 -14093992 + (CTG)n Simple_repeat Simple_repeat 1 74 0 3 664 286 299 0 0 chr3L 10450639 10450756 -14092801 + T-rich Low_complexity Low_complexity 1 117 0 3 664 23 33 0 0 chr3L 10452076 10452106 -14091451 + AT_rich Low_complexity Low_complexity 1 30 0 3 664 23 33 0 0 chr3L 10452220 10452250 -14091307 + AT_rich Low_complexity Low_complexity 1 30 0 3 664 213 39 0 0 chr3L 10453522 10453548 -14090009 + (TCC)n Simple_repeat Simple_repeat 2 27 0 3 664 22 0 0 0 chr3L 10456760 10456782 -14086775 + AT_rich Low_complexity Low_complexity 1 22 0 3 664 26 50 0 0 chr3L 10456843 10456883 -14086674 + AT_rich Low_complexity Low_complexity 1 40 0 3 664 23 0 0 0 chr3L 10457656 10457679 -14085878 + AT_rich Low_complexity Low_complexity 1 23 0 3 664 305 190 62 12 chr3L 10458784 10458864 -14084693 - DNAREP1_DM LINE Penelope -10 584 501 3 664 21 71 0 0 chr3L 10458957 10458999 -14084558 + AT_rich Low_complexity Low_complexity 1 42 0 3 664 21 0 0 0 chr3L 10465138 10465159 -14078398 + AT_rich Low_complexity Low_complexity 1 21 0 3 664 29 0 0 0 chr3L 10466309 10466338 -14077219 + AT_rich Low_complexity Low_complexity 1 29 0 3 664 234 0 0 0 chr3L 10467011 10467037 -14076520 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 664 24 0 0 0 chr3L 10467503 10467527 -14076030 + AT_rich Low_complexity Low_complexity 1 24 0 3 664 207 0 0 0 chr3L 10468836 10468859 -14074698 + (ACTG)n Simple_repeat Simple_repeat 2 24 0 3 664 21 0 0 0 chr3L 10470804 10470825 -14072732 + AT_rich Low_complexity Low_complexity 1 21 0 3 664 22 35 0 0 chr3L 10473542 10473571 -14069986 + AT_rich Low_complexity Low_complexity 1 29 0 3 664 23 54 0 0 chr3L 10477412 10477449 -14066108 + AT_rich Low_complexity Low_complexity 1 37 0 3 664 27 49 0 0 chr3L 10481210 10481251 -14062306 + AT_rich Low_complexity Low_complexity 1 41 0 3 664 189 74 0 0 chr3L 10483476 10483503 -14060054 + (TTAG)n Simple_repeat Simple_repeat 2 28 0 3 665 21 36 0 0 chr3L 10489561 10489589 -14053968 + AT_rich Low_complexity Low_complexity 1 28 0 3 665 21 36 0 0 chr3L 10491538 10491566 -14051991 + AT_rich Low_complexity Low_complexity 1 28 0 3 665 22 70 0 0 chr3L 10493487 10493530 -14050027 + AT_rich Low_complexity Low_complexity 1 43 0 3 665 23 0 0 0 chr3L 10494664 10494687 -14048870 + AT_rich Low_complexity Low_complexity 1 23 0 3 665 33 0 0 0 chr3L 10495639 10495672 -14047885 + AT_rich Low_complexity Low_complexity 1 33 0 3 665 225 0 0 0 chr3L 10495799 10495824 -14047733 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 3 665 201 74 0 0 chr3L 10496004 10496031 -14047526 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 665 21 71 0 0 chr3L 10496365 10496407 -14047150 + AT_rich Low_complexity Low_complexity 1 42 0 3 665 194 105 26 0 chr3L 10496904 10496942 -14046615 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 665 285 155 0 0 chr3L 10497464 10497522 -14046035 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 665 21 36 0 0 chr3L 10500711 10500739 -14042818 + AT_rich Low_complexity Low_complexity 1 28 0 3 665 38 51 0 0 chr3L 10501056 10501115 -14042442 + AT_rich Low_complexity Low_complexity 1 59 0 3 665 33 90 0 0 chr3L 10501388 10501477 -14042080 + AT_rich Low_complexity Low_complexity 1 89 0 3 665 32 81 0 0 chr3L 10501554 10501628 -14041929 + AT_rich Low_complexity Low_complexity 1 74 0 3 665 375 60 0 0 chr3L 10502138 10502188 -14041369 + (CAA)n Simple_repeat Simple_repeat 1 50 0 3 665 186 150 0 0 chr3L 10502333 10502373 -14041184 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 3 665 53 81 0 0 chr3L 10502909 10503032 -14040525 + AT_rich Low_complexity Low_complexity 1 123 0 3 665 219 69 0 0 chr3L 10503451 10503480 -14040077 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 665 210 37 0 0 chr3L 10503777 10503804 -14039753 + (T)n Simple_repeat Simple_repeat 1 27 0 3 665 198 71 0 0 chr3L 10504009 10504037 -14039520 + (T)n Simple_repeat Simple_repeat 1 28 0 3 665 201 171 0 0 chr3L 10504203 10504238 -14039319 + A-rich Low_complexity Low_complexity 1 35 0 3 665 30 77 0 0 chr3L 10505354 10505419 -14038138 + AT_rich Low_complexity Low_complexity 1 65 0 3 665 192 77 0 0 chr3L 10505653 10505679 -14037878 + (T)n Simple_repeat Simple_repeat 1 26 0 3 665 37 0 0 0 chr3L 10506219 10506256 -14037301 + AT_rich Low_complexity Low_complexity 1 37 0 3 665 21 0 0 0 chr3L 10506450 10506471 -14037086 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 216 0 0 0 chr3L 10507954 10507978 -14035579 + (CTG)n Simple_repeat Simple_repeat 1 24 0 3 665 30 59 0 0 chr3L 10508076 10508127 -14035430 + AT_rich Low_complexity Low_complexity 1 51 0 3 665 27 49 0 0 chr3L 10508734 10508775 -14034782 + AT_rich Low_complexity Low_complexity 1 41 0 3 665 203 184 0 0 chr3L 10509486 10509524 -14034033 + GA-rich Low_complexity Low_complexity 2 39 0 3 665 204 206 0 0 chr3L 10509607 10509641 -14033916 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 665 201 237 0 0 chr3L 10510879 10510938 -14032619 + (CTCG)n Simple_repeat Simple_repeat 1 59 0 3 665 27 29 0 0 chr3L 10512652 10512686 -14030871 + AT_rich Low_complexity Low_complexity 1 34 0 3 665 234 136 0 0 chr3L 10514780 10514824 -14028733 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 665 203 175 0 0 chr3L 10515031 10515071 -14028486 + T-rich Low_complexity Low_complexity 1 40 0 3 665 21 57 0 0 chr3L 10517630 10517665 -14025892 + AT_rich Low_complexity Low_complexity 1 35 0 3 665 24 67 0 0 chr3L 10517698 10517743 -14025814 + AT_rich Low_complexity Low_complexity 1 45 0 3 665 22 56 0 0 chr3L 10517948 10517984 -14025573 + AT_rich Low_complexity Low_complexity 1 36 0 3 665 21 36 0 0 chr3L 10520071 10520099 -14023458 + AT_rich Low_complexity Low_complexity 1 28 0 3 665 216 111 0 0 chr3L 10523096 10523132 -14020425 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 665 23 33 0 0 chr3L 10523929 10523959 -14019598 + AT_rich Low_complexity Low_complexity 1 30 0 3 665 189 0 0 0 chr3L 10523964 10523985 -14019572 + (T)n Simple_repeat Simple_repeat 1 21 0 3 665 195 42 0 0 chr3L 10524321 10524345 -14019212 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 665 26 0 0 0 chr3L 10527688 10527714 -14015843 + AT_rich Low_complexity Low_complexity 1 26 0 3 665 24 0 0 0 chr3L 10528014 10528038 -14015519 + AT_rich Low_complexity Low_complexity 1 24 0 3 665 180 111 0 0 chr3L 10528617 10528644 -14014913 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 665 40 49 0 0 chr3L 10529626 10529687 -14013870 + AT_rich Low_complexity Low_complexity 1 61 0 3 665 22 35 0 0 chr3L 10530271 10530300 -14013257 + AT_rich Low_complexity Low_complexity 1 29 0 3 665 195 146 0 0 chr3L 10531581 10531622 -14011935 + (T)n Simple_repeat Simple_repeat 1 41 0 3 665 21 0 0 0 chr3L 10531988 10532009 -14011548 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 210 87 42 42 chr3L 10533903 10533951 -14009606 + (TA)n Simple_repeat Simple_repeat 1 48 0 3 665 21 0 0 0 chr3L 10541955 10541976 -14001581 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 202 194 0 0 chr3L 10543349 10543385 -14000172 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 665 26 30 0 0 chr3L 10543785 10543818 -13999739 + AT_rich Low_complexity Low_complexity 1 33 0 3 665 221 180 20 0 chr3L 10545076 10545126 -13998431 + (TTG)n Simple_repeat Simple_repeat 1 51 0 3 665 218 200 0 0 chr3L 10545446 10545486 -13998071 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 665 22 35 0 0 chr3L 10545703 10545732 -13997825 + AT_rich Low_complexity Low_complexity 1 29 0 3 665 23 33 0 0 chr3L 10550181 10550211 -13993346 + AT_rich Low_complexity Low_complexity 1 30 0 3 665 30 27 0 0 chr3L 10555495 10555532 -13988025 + AT_rich Low_complexity Low_complexity 1 37 0 3 665 217 180 0 20 chr3L 10555750 10555801 -13987756 + (CAT)n Simple_repeat Simple_repeat 1 50 0 3 665 39 0 0 0 chr3L 10555889 10555928 -13987629 + AT_rich Low_complexity Low_complexity 1 39 0 3 665 224 185 0 18 chr3L 10561144 10561199 -13982358 + CT-rich Low_complexity Low_complexity 1 54 0 3 665 243 155 0 0 chr3L 10561330 10561401 -13982156 + ROO_I LTR Pao 656 726 -7530 3 665 204 97 0 0 chr3L 10561919 10561950 -13981607 + (GTTTG)n Simple_repeat Simple_repeat 1 31 0 3 665 293 0 0 26 chr3L 10561971 10562009 -13981548 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 665 210 156 0 0 chr3L 10562565 10562610 -13980947 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 665 28 0 0 0 chr3L 10564364 10564392 -13979165 + AT_rich Low_complexity Low_complexity 1 28 0 3 665 195 100 0 0 chr3L 10565990 10566020 -13977537 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 665 204 67 0 0 chr3L 10566630 10566660 -13976897 + (CGG)n Simple_repeat Simple_repeat 2 31 0 3 665 22 0 0 0 chr3L 10567501 10567523 -13976034 + AT_rich Low_complexity Low_complexity 1 22 0 3 665 194 105 26 0 chr3L 10568245 10568283 -13975274 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 665 32 0 0 0 chr3L 10569357 10569389 -13974168 + AT_rich Low_complexity Low_complexity 1 32 0 3 665 26 0 0 0 chr3L 10569412 10569438 -13974119 + AT_rich Low_complexity Low_complexity 1 26 0 3 665 222 267 13 13 chr3L 10569588 10569664 -13973893 + (CA)n Simple_repeat Simple_repeat 2 77 0 3 665 219 197 0 32 chr3L 10569841 10569904 -13973653 + T-rich Low_complexity Low_complexity 1 61 0 3 665 210 71 0 0 chr3L 10570298 10570326 -13973231 + (ATG)n Simple_repeat Simple_repeat 2 29 0 3 665 201 39 0 0 chr3L 10571447 10571473 -13972084 + (GGATG)n Simple_repeat Simple_repeat 5 30 0 3 665 387 73 0 0 chr3L 10572110 10572165 -13971392 + (CAGT)n Simple_repeat Simple_repeat 2 56 0 3 665 208 147 0 0 chr3L 10572516 10572550 -13971007 + (T)n Simple_repeat Simple_repeat 1 34 0 3 665 180 77 0 0 chr3L 10572607 10572633 -13970924 + (TCTG)n Simple_repeat Simple_repeat 1 26 0 3 665 189 121 0 0 chr3L 10573351 10573384 -13970173 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 665 240 267 0 34 chr3L 10575048 10575137 -13968420 + (CGG)n Simple_repeat Simple_repeat 3 88 0 3 665 21 0 0 0 chr3L 10576935 10576956 -13966601 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 34 0 0 0 chr3L 10576990 10577024 -13966533 + AT_rich Low_complexity Low_complexity 1 34 0 3 665 21 0 0 0 chr3L 10577758 10577779 -13965778 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 211 122 20 20 chr3L 10578106 10578156 -13965401 + (CAG)n Simple_repeat Simple_repeat 1 50 0 3 665 309 157 9 38 chr3L 10578182 10578288 -13965269 + ROO_I LTR Pao 639 741 -7515 3 665 37 39 0 0 chr3L 10578978 10579029 -13964528 + AT_rich Low_complexity Low_complexity 1 51 0 3 665 201 39 0 0 chr3L 10579690 10579716 -13963841 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 665 288 91 0 0 chr3L 10579753 10579797 -13963760 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 665 26 0 0 0 chr3L 10579902 10579928 -13963629 + AT_rich Low_complexity Low_complexity 1 26 0 3 665 21 0 0 0 chr3L 10580344 10580365 -13963192 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 261 263 8 33 chr3L 10582859 10582981 -13960576 + (TTTA)n Simple_repeat Simple_repeat 4 122 0 3 665 26 0 0 0 chr3L 10583073 10583099 -13960458 + AT_rich Low_complexity Low_complexity 1 26 0 3 665 24 0 0 0 chr3L 10583287 10583311 -13960246 + AT_rich Low_complexity Low_complexity 1 24 0 3 665 202 220 0 0 chr3L 10584020 10584070 -13959487 + A-rich Low_complexity Low_complexity 1 50 0 3 665 183 80 0 0 chr3L 10584174 10584199 -13959358 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 665 27 29 0 0 chr3L 10584823 10584857 -13958700 + AT_rich Low_complexity Low_complexity 1 34 0 3 665 28 48 0 0 chr3L 10586359 10586401 -13957156 + AT_rich Low_complexity Low_complexity 1 42 0 3 665 222 118 0 0 chr3L 10587559 10587593 -13955964 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 665 24 0 0 0 chr3L 10589553 10589577 -13953980 + AT_rich Low_complexity Low_complexity 1 24 0 3 665 23 68 0 0 chr3L 10590430 10590474 -13953083 + AT_rich Low_complexity Low_complexity 1 44 0 3 665 22 35 0 0 chr3L 10594733 10594762 -13948795 + AT_rich Low_complexity Low_complexity 1 29 0 3 665 22 35 0 0 chr3L 10594842 10594871 -13948686 + AT_rich Low_complexity Low_complexity 1 29 0 3 665 22 0 0 0 chr3L 10596766 10596788 -13946769 + AT_rich Low_complexity Low_complexity 1 22 0 3 665 204 125 0 0 chr3L 10598161 10598193 -13945364 + (A)n Simple_repeat Simple_repeat 1 32 0 3 665 31 26 0 0 chr3L 10599562 10599600 -13943957 + AT_rich Low_complexity Low_complexity 1 38 0 3 665 21 0 0 0 chr3L 10599658 10599679 -13943878 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 23 54 0 0 chr3L 10600474 10600511 -13943046 + AT_rich Low_complexity Low_complexity 1 37 0 3 665 228 111 0 0 chr3L 10600990 10601026 -13942531 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 3 665 26 74 0 0 chr3L 10601411 10601465 -13942092 + AT_rich Low_complexity Low_complexity 1 54 0 3 665 25 31 0 0 chr3L 10602542 10602574 -13940983 + AT_rich Low_complexity Low_complexity 1 32 0 3 665 21 0 0 0 chr3L 10603333 10603354 -13940203 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 21 0 0 0 chr3L 10605561 10605582 -13937975 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 41 58 0 0 chr3L 10607714 10607783 -13935774 + AT_rich Low_complexity Low_complexity 1 69 0 3 665 46 45 0 0 chr3L 10607923 10607990 -13935567 + AT_rich Low_complexity Low_complexity 1 67 0 3 665 180 0 0 0 chr3L 10608377 10608397 -13935160 + (ATGGTG)n Simple_repeat Simple_repeat 6 25 0 3 665 213 219 0 0 chr3L 10610247 10610288 -13933269 + (TATATG)n Simple_repeat Simple_repeat 6 46 0 3 665 206 150 25 0 chr3L 10612851 10612891 -13930666 + (CGAG)n Simple_repeat Simple_repeat 4 44 0 3 665 21 0 0 0 chr3L 10613343 10613364 -13930193 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 40 49 0 0 chr3L 10613452 10613513 -13930044 + AT_rich Low_complexity Low_complexity 1 61 0 3 665 24 67 0 0 chr3L 10613571 10613616 -13929941 + AT_rich Low_complexity Low_complexity 1 45 0 3 665 33 56 0 0 chr3L 10614759 10614813 -13928744 + AT_rich Low_complexity Low_complexity 1 54 0 3 665 21 0 0 0 chr3L 10615714 10615735 -13927822 + AT_rich Low_complexity Low_complexity 1 21 0 3 665 36 97 0 0 chr3L 10616078 10616191 -13927366 + AT_rich Low_complexity Low_complexity 1 113 0 3 665 225 276 0 0 chr3L 10616307 10616394 -13927163 + CT-rich Low_complexity Low_complexity 3 89 0 3 666 30 83 0 0 chr3L 10620484 10620556 -13923001 + AT_rich Low_complexity Low_complexity 1 72 0 3 666 22 0 0 0 chr3L 10620794 10620816 -13922741 + AT_rich Low_complexity Low_complexity 1 22 0 3 666 21 0 0 0 chr3L 10623142 10623163 -13920394 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 210 111 66 53 chr3L 10631060 10631136 -13912421 + (TATAA)n Simple_repeat Simple_repeat 1 77 0 3 666 25 31 0 0 chr3L 10631317 10631349 -13912208 + AT_rich Low_complexity Low_complexity 1 32 0 3 666 26 50 0 0 chr3L 10633823 10633863 -13909694 + AT_rich Low_complexity Low_complexity 1 40 0 3 666 188 184 0 20 chr3L 10638057 10638107 -13905450 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 666 240 163 0 0 chr3L 10638191 10638234 -13905323 + (CAT)n Simple_repeat Simple_repeat 1 43 0 3 666 294 164 0 0 chr3L 10639193 10639248 -13904309 + (CAGT)n Simple_repeat Simple_repeat 4 58 0 3 666 25 51 0 0 chr3L 10644976 10645015 -13898542 + AT_rich Low_complexity Low_complexity 1 39 0 3 666 27 0 0 0 chr3L 10645597 10645624 -13897933 + AT_rich Low_complexity Low_complexity 1 27 0 3 666 180 77 0 0 chr3L 10649060 10649086 -13894471 + (TCTG)n Simple_repeat Simple_repeat 2 27 0 3 666 22 56 0 0 chr3L 10651921 10651957 -13891600 + AT_rich Low_complexity Low_complexity 1 36 0 3 666 22 56 0 0 chr3L 10653171 10653207 -13890350 + AT_rich Low_complexity Low_complexity 1 36 0 3 666 201 39 0 0 chr3L 10653439 10653465 -13890092 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 666 28 0 0 0 chr3L 10653903 10653931 -13889626 + AT_rich Low_complexity Low_complexity 1 28 0 3 666 192 40 0 0 chr3L 10654369 10654394 -13889163 + (TATAA)n Simple_repeat Simple_repeat 1 25 0 3 666 214 162 0 0 chr3L 10658071 10658108 -13885449 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 666 209 258 16 0 chr3L 10659908 10659970 -13883587 + CT-rich Low_complexity Low_complexity 2 64 0 3 666 231 230 13 13 chr3L 10660011 10660086 -13883471 + (TTG)n Simple_repeat Simple_repeat 2 76 0 3 666 209 128 21 0 chr3L 10662949 10662996 -13880561 + (CAA)n Simple_repeat Simple_repeat 2 49 0 3 666 183 100 0 0 chr3L 10663475 10663505 -13880052 + (CTG)n Simple_repeat Simple_repeat 1 30 0 3 666 189 74 0 0 chr3L 10665097 10665124 -13878433 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 666 26 30 0 0 chr3L 10666325 10666358 -13877199 + AT_rich Low_complexity Low_complexity 1 33 0 3 666 209 98 24 0 chr3L 10667334 10667375 -13876182 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 666 251 257 0 0 chr3L 10667414 10667484 -13876073 + CT-rich Low_complexity Low_complexity 2 71 0 3 666 232 218 0 18 chr3L 10669081 10669137 -13874420 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 666 180 125 0 0 chr3L 10671115 10671147 -13872410 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 666 221 207 17 17 chr3L 10672313 10672372 -13871185 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 3 666 233 226 16 16 chr3L 10674025 10674088 -13869469 + (CACCC)n Simple_repeat Simple_repeat 5 67 0 3 666 228 167 24 0 chr3L 10674639 10674681 -13868876 + (TATG)n Simple_repeat Simple_repeat 1 43 0 3 666 270 179 0 0 chr3L 10675152 10675208 -13868349 + (TTG)n Simple_repeat Simple_repeat 1 56 0 3 666 23 54 0 0 chr3L 10676003 10676040 -13867517 + AT_rich Low_complexity Low_complexity 1 37 0 3 666 23 0 0 0 chr3L 10676052 10676075 -13867482 + AT_rich Low_complexity Low_complexity 1 23 0 3 666 21 36 0 0 chr3L 10677247 10677275 -13866282 + AT_rich Low_complexity Low_complexity 1 28 0 3 666 258 245 0 0 chr3L 10678361 10678459 -13865098 + (CAA)n Simple_repeat Simple_repeat 1 98 0 3 666 258 286 0 0 chr3L 10681330 10681414 -13862143 + (CAG)n Simple_repeat Simple_repeat 1 84 0 3 666 31 44 0 0 chr3L 10682847 10682892 -13860665 + AT_rich Low_complexity Low_complexity 1 45 0 3 666 213 39 0 0 chr3L 10683479 10683505 -13860052 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 666 203 88 29 0 chr3L 10684310 10684344 -13859213 + (CAG)n Simple_repeat Simple_repeat 1 35 0 3 666 180 0 0 0 chr3L 10689754 10689774 -13853783 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 3 666 21 36 0 0 chr3L 10690217 10690245 -13853312 + AT_rich Low_complexity Low_complexity 1 28 0 3 666 57 71 0 0 chr3L 10690285 10690398 -13853159 + AT_rich Low_complexity Low_complexity 1 113 0 3 666 216 196 0 21 chr3L 10690443 10690490 -13853067 + CT-rich Low_complexity Low_complexity 2 47 0 3 666 23 68 0 0 chr3L 10691121 10691165 -13852392 + AT_rich Low_complexity Low_complexity 1 44 0 3 666 26 0 0 0 chr3L 10691237 10691263 -13852294 + AT_rich Low_complexity Low_complexity 1 26 0 3 666 29 70 0 0 chr3L 10691465 10691522 -13852035 + AT_rich Low_complexity Low_complexity 1 57 0 3 666 240 35 0 0 chr3L 10691945 10691974 -13851583 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 666 29 0 0 0 chr3L 10692086 10692115 -13851442 + AT_rich Low_complexity Low_complexity 1 29 0 3 666 381 70 0 0 chr3L 10692542 10692599 -13850958 + (CAT)n Simple_repeat Simple_repeat 1 57 0 3 666 212 158 18 0 chr3L 10692623 10692680 -13850877 + (CAG)n Simple_repeat Simple_repeat 2 59 0 3 666 201 152 0 0 chr3L 10693775 10693808 -13849749 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 666 225 139 0 0 chr3L 10693888 10693931 -13849626 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 666 180 0 0 0 chr3L 10694009 10694029 -13849528 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 666 26 50 0 0 chr3L 10694836 10694876 -13848681 + AT_rich Low_complexity Low_complexity 1 40 0 3 666 23 0 0 0 chr3L 10695135 10695158 -13848399 + AT_rich Low_complexity Low_complexity 1 23 0 3 666 203 152 0 0 chr3L 10695575 10695608 -13847949 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 666 246 81 0 0 chr3L 10696073 10696110 -13847447 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 666 22 35 0 0 chr3L 10696610 10696639 -13846918 + AT_rich Low_complexity Low_complexity 1 29 0 3 666 27 29 0 0 chr3L 10696702 10696736 -13846821 + AT_rich Low_complexity Low_complexity 1 34 0 3 666 233 259 0 36 chr3L 10697411 10697495 -13846062 + (TATATG)n Simple_repeat Simple_repeat 5 85 0 3 666 229 277 0 0 chr3L 10698079 10698144 -13845413 + (TTG)n Simple_repeat Simple_repeat 1 65 0 3 666 34 72 0 0 chr3L 10699576 10699645 -13843912 + AT_rich Low_complexity Low_complexity 1 69 0 3 666 210 91 0 0 chr3L 10700805 10700838 -13842719 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 666 21 0 0 0 chr3L 10700937 10700958 -13842599 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 33 66 0 0 chr3L 10702311 10702372 -13841185 + AT_rich Low_complexity Low_complexity 1 61 0 3 666 216 250 0 0 chr3L 10703967 10704019 -13839538 + (GAGTG)n Simple_repeat Simple_repeat 1 52 0 3 666 366 61 0 0 chr3L 10704247 10704296 -13839261 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 666 249 139 0 0 chr3L 10704765 10704808 -13838749 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 666 195 146 0 0 chr3L 10705273 10705314 -13838243 + (T)n Simple_repeat Simple_repeat 1 41 0 3 666 23 0 0 0 chr3L 10705692 10705715 -13837842 + AT_rich Low_complexity Low_complexity 1 23 0 3 666 192 200 0 0 chr3L 10707041 10707091 -13836466 + T-rich Low_complexity Low_complexity 1 50 0 3 666 272 48 24 0 chr3L 10707374 10707416 -13836141 + (CATA)n Simple_repeat Simple_repeat 2 44 0 3 666 214 174 0 0 chr3L 10708549 10708595 -13834962 + T-rich Low_complexity Low_complexity 1 46 0 3 666 195 42 0 0 chr3L 10709350 10709374 -13834183 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 666 22 35 0 0 chr3L 10710376 10710405 -13833152 + AT_rich Low_complexity Low_complexity 1 29 0 3 666 273 268 0 0 chr3L 10713331 10713402 -13830155 + (TG)n Simple_repeat Simple_repeat 2 72 0 3 666 39 100 0 0 chr3L 10714215 10714345 -13829212 + AT_rich Low_complexity Low_complexity 1 130 0 3 666 202 143 23 23 chr3L 10714599 10714642 -13828915 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 666 217 259 0 0 chr3L 10714687 10714741 -13828816 + T-rich Low_complexity Low_complexity 1 54 0 3 666 210 207 0 0 chr3L 10714846 10714904 -13828653 + (CA)n Simple_repeat Simple_repeat 2 59 0 3 666 201 74 0 0 chr3L 10715597 10715624 -13827933 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 666 243 103 0 0 chr3L 10715897 10715936 -13827621 + (GA)n Simple_repeat Simple_repeat 1 39 0 3 666 25 83 0 0 chr3L 10716529 10716589 -13826968 + AT_rich Low_complexity Low_complexity 1 60 0 3 666 300 176 0 0 chr3L 10716956 10717024 -13826533 + (TG)n Simple_repeat Simple_repeat 1 68 0 3 666 201 94 0 0 chr3L 10717888 10717920 -13825637 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 666 24 53 0 0 chr3L 10718924 10718962 -13824595 + AT_rich Low_complexity Low_complexity 1 38 0 3 666 23 78 0 0 chr3L 10719961 10720012 -13823545 + AT_rich Low_complexity Low_complexity 1 51 0 3 666 22 70 0 0 chr3L 10720075 10720118 -13823439 + AT_rich Low_complexity Low_complexity 1 43 0 3 666 22 35 0 0 chr3L 10722058 10722087 -13821470 + AT_rich Low_complexity Low_complexity 1 29 0 3 666 32 43 0 0 chr3L 10722181 10722227 -13821330 + AT_rich Low_complexity Low_complexity 1 46 0 3 666 24 32 0 0 chr3L 10722295 10722326 -13821231 + AT_rich Low_complexity Low_complexity 1 31 0 3 666 213 185 0 71 chr3L 10724357 10724427 -13819130 + T-rich Low_complexity Low_complexity 5 69 0 3 666 22 56 0 0 chr3L 10726029 10726065 -13817492 + AT_rich Low_complexity Low_complexity 1 36 0 3 666 33 43 0 0 chr3L 10727385 10727432 -13816125 + AT_rich Low_complexity Low_complexity 1 47 0 3 666 21 0 0 0 chr3L 10727552 10727573 -13815984 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 210 139 0 0 chr3L 10727730 10727766 -13815791 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 666 243 61 0 0 chr3L 10727875 10727908 -13815649 + (CAATT)n Simple_repeat Simple_repeat 4 36 0 3 666 248 102 20 0 chr3L 10728960 10729009 -13814548 + (TAAAA)n Simple_repeat Simple_repeat 5 54 0 3 666 180 77 0 0 chr3L 10730589 10730615 -13812942 + (TTG)n Simple_repeat Simple_repeat 2 27 0 3 666 306 281 24 24 chr3L 10730690 10730858 -13812699 + (TTG)n Simple_repeat Simple_repeat 1 168 0 3 666 42 71 0 0 chr3L 10731899 10731983 -13811574 + AT_rich Low_complexity Low_complexity 1 84 0 3 666 21 0 0 0 chr3L 10732011 10732032 -13811525 + AT_rich Low_complexity Low_complexity 1 21 0 3 666 183 42 0 0 chr3L 10732265 10732289 -13811268 + (CAA)n Simple_repeat Simple_repeat 1 24 0 3 666 183 42 0 0 chr3L 10732616 10732640 -13810917 + (TC)n Simple_repeat Simple_repeat 2 25 0 3 666 195 42 0 0 chr3L 10732762 10732786 -13810771 + (GA)n Simple_repeat Simple_repeat 1 24 0 3 666 189 0 0 0 chr3L 10733342 10733363 -13810194 + (GA)n Simple_repeat Simple_repeat 2 22 0 3 666 204 258 0 16 chr3L 10733617 10733680 -13809877 + (TTG)n Simple_repeat Simple_repeat 2 63 0 3 666 201 167 0 0 chr3L 10733720 10733756 -13809801 + A-rich Low_complexity Low_complexity 4 39 0 3 666 240 162 13 51 chr3L 10734345 10734423 -13809134 + (CTTTG)n Simple_repeat Simple_repeat 5 79 0 3 666 198 0 0 0 chr3L 10735992 10736014 -13807543 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 666 21 36 0 0 chr3L 10736692 10736720 -13806837 + AT_rich Low_complexity Low_complexity 1 28 0 3 666 198 71 0 0 chr3L 10739156 10739184 -13804373 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 666 189 0 0 0 chr3L 10739759 10739780 -13803777 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 3 666 252 130 0 0 chr3L 10740674 10740720 -13802837 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 666 23 0 0 0 chr3L 10742968 10742991 -13800566 + AT_rich Low_complexity Low_complexity 1 23 0 3 666 232 221 0 104 chr3L 10742994 10743100 -13800457 + T-rich Low_complexity Low_complexity 1 95 0 3 666 24 53 0 0 chr3L 10743535 10743573 -13799984 + AT_rich Low_complexity Low_complexity 1 38 0 3 666 180 0 0 0 chr3L 10746843 10746863 -13796694 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 3 666 204 200 0 0 chr3L 10747622 10747667 -13795890 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 666 312 148 0 0 chr3L 10747779 10747840 -13795717 + (TA)n Simple_repeat Simple_repeat 2 62 0 3 667 282 56 0 0 chr3L 10747973 10748009 -13795548 + (TTG)n Simple_repeat Simple_repeat 2 37 0 3 667 35 78 0 0 chr3L 10748649 10748726 -13794831 + AT_rich Low_complexity Low_complexity 1 77 0 3 667 23 0 0 0 chr3L 10748769 10748792 -13794765 + AT_rich Low_complexity Low_complexity 1 23 0 3 667 31 0 0 0 chr3L 10750208 10750239 -13793318 + AT_rich Low_complexity Low_complexity 1 31 0 3 667 25 0 0 0 chr3L 10750816 10750841 -13792716 + AT_rich Low_complexity Low_complexity 1 25 0 3 667 207 106 29 57 chr3L 10751184 10751254 -13792303 + (TTG)n Simple_repeat Simple_repeat 1 68 0 3 667 21 36 0 0 chr3L 10752807 10752835 -13790722 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 204 47 14 111 chr3L 10752954 10753026 -13790531 + (TATATG)n Simple_repeat Simple_repeat 1 65 0 3 667 210 37 0 0 chr3L 10754144 10754171 -13789386 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 667 21 36 0 0 chr3L 10755585 10755613 -13787944 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 215 310 0 0 chr3L 10758120 10758191 -13785366 + T-rich Low_complexity Low_complexity 1 71 0 3 667 186 103 0 0 chr3L 10758526 10758555 -13785002 + (T)n Simple_repeat Simple_repeat 1 29 0 3 667 211 177 32 0 chr3L 10759474 10759536 -13784021 + (TTG)n Simple_repeat Simple_repeat 3 66 0 3 667 186 167 33 16 chr3L 10759550 10759611 -13783946 + (CAG)n Simple_repeat Simple_repeat 1 62 0 3 667 239 279 0 0 chr3L 10759988 10760067 -13783490 + (TG)n Simple_repeat Simple_repeat 2 80 0 3 667 306 81 31 31 chr3L 10760778 10760842 -13782715 + (CAG)n Simple_repeat Simple_repeat 3 66 0 3 667 242 125 0 20 chr3L 10761135 10761184 -13782373 + (TTC)n Simple_repeat Simple_repeat 2 49 0 3 667 27 62 0 0 chr3L 10761806 10761854 -13781703 + AT_rich Low_complexity Low_complexity 1 48 0 3 667 26 64 0 0 chr3L 10762853 10762900 -13780657 + AT_rich Low_complexity Low_complexity 1 47 0 3 667 27 0 0 0 chr3L 10764154 10764181 -13779376 + AT_rich Low_complexity Low_complexity 1 27 0 3 667 306 148 0 0 chr3L 10764814 10764868 -13778689 + (CAGTT)n Simple_repeat Simple_repeat 3 56 0 3 667 279 146 0 0 chr3L 10765116 10765171 -13778386 + (TGGA)n Simple_repeat Simple_repeat 3 57 0 3 667 180 0 0 0 chr3L 10765294 10765314 -13778243 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 667 22 35 0 0 chr3L 10765694 10765723 -13777834 + AT_rich Low_complexity Low_complexity 1 29 0 3 667 24 32 0 0 chr3L 10765849 10765880 -13777677 + AT_rich Low_complexity Low_complexity 1 31 0 3 667 21 36 0 0 chr3L 10766367 10766395 -13777162 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 222 130 17 69 chr3L 10767082 10767140 -13776417 + T-rich Low_complexity Low_complexity 2 56 0 3 667 240 35 0 0 chr3L 10769385 10769414 -13774143 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 667 282 188 49 24 chr3L 10771025 10771107 -13772450 + ROO_I LTR Pao 646 729 -7527 3 667 272 217 10 42 chr3L 10772482 10772578 -13770979 + A-rich Low_complexity Low_complexity 2 94 0 3 667 195 42 0 0 chr3L 10772595 10772619 -13770938 + (CAG)n Simple_repeat Simple_repeat 3 26 0 3 667 22 0 0 0 chr3L 10773068 10773090 -13770467 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 200 200 0 14 chr3L 10773510 10773581 -13769976 + (ACTG)n Simple_repeat Simple_repeat 1 70 0 3 667 26 30 0 0 chr3L 10774954 10774987 -13768570 + AT_rich Low_complexity Low_complexity 1 33 0 3 667 24 0 0 0 chr3L 10775405 10775429 -13768128 + AT_rich Low_complexity Low_complexity 1 24 0 3 667 25 90 0 0 chr3L 10777833 10777900 -13765657 + AT_rich Low_complexity Low_complexity 1 67 0 3 667 267 237 0 0 chr3L 10778885 10778978 -13764579 + (TTG)n Simple_repeat Simple_repeat 1 93 0 3 667 34 72 0 0 chr3L 10779091 10779160 -13764397 + AT_rich Low_complexity Low_complexity 1 69 0 3 667 201 167 0 0 chr3L 10779448 10779484 -13764073 + A-rich Low_complexity Low_complexity 1 36 0 3 667 26 30 0 0 chr3L 10780389 10780422 -13763135 + AT_rich Low_complexity Low_complexity 1 33 0 3 667 22 0 0 0 chr3L 10780907 10780929 -13762628 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 237 132 0 0 chr3L 10781232 10781270 -13762287 + (CAA)n Simple_repeat Simple_repeat 3 40 0 3 667 29 0 0 0 chr3L 10783725 10783754 -13759803 + AT_rich Low_complexity Low_complexity 1 29 0 3 667 24 0 0 0 chr3L 10785417 10785441 -13758116 + AT_rich Low_complexity Low_complexity 1 24 0 3 667 216 97 0 0 chr3L 10785897 10785928 -13757629 + (A)n Simple_repeat Simple_repeat 1 31 0 3 667 329 43 21 0 chr3L 10786759 10786806 -13756751 + (GA)n Simple_repeat Simple_repeat 1 48 0 3 667 218 116 23 0 chr3L 10786943 10786986 -13756571 + (CAA)n Simple_repeat Simple_repeat 3 46 0 3 667 202 281 0 46 chr3L 10787629 10787737 -13755820 + (TCTA)n Simple_repeat Simple_repeat 2 104 0 3 667 21 57 0 0 chr3L 10791689 10791724 -13751833 + AT_rich Low_complexity Low_complexity 1 35 0 3 667 230 159 0 0 chr3L 10792149 10792193 -13751364 + DOC3_DM LINE Jockey 531 574 -4166 3 667 229 253 0 0 chr3L 10792193 10792223 -13751334 + ROO_I LTR Pao 641 714 -7542 3 667 192 125 0 0 chr3L 10794395 10794427 -13749130 + (TGG)n Simple_repeat Simple_repeat 2 33 0 3 667 201 211 0 0 chr3L 10794436 10794488 -13749069 + (CGG)n Simple_repeat Simple_repeat 1 52 0 3 667 205 158 0 50 chr3L 10794593 10794653 -13748904 + (CGG)n Simple_repeat Simple_repeat 2 58 0 3 667 201 154 0 0 chr3L 10798760 10798799 -13744758 + (ATGGTG)n Simple_repeat Simple_repeat 2 40 0 3 667 51 31 0 0 chr3L 10799201 10799266 -13744291 + AT_rich Low_complexity Low_complexity 1 65 0 3 667 289 258 11 0 chr3L 10799862 10799951 -13743606 + (CA)n Simple_repeat Simple_repeat 1 90 0 3 667 255 211 0 0 chr3L 10800031 10800083 -13743474 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 667 24 53 0 0 chr3L 10800833 10800871 -13742686 + AT_rich Low_complexity Low_complexity 1 38 0 3 667 1049 186 12 12 chr3L 10802961 10803211 -13740346 - XDMR Unknown Unknown -111 250 1 3 667 208 154 19 37 chr3L 10804048 10804102 -13739455 + (TTCG)n Simple_repeat Simple_repeat 1 53 0 3 667 276 30 0 0 chr3L 10804185 10804218 -13739339 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 667 21 57 0 0 chr3L 10804879 10804914 -13738643 + AT_rich Low_complexity Low_complexity 1 35 0 3 667 25 95 0 0 chr3L 10806178 10806252 -13737305 + AT_rich Low_complexity Low_complexity 1 74 0 3 667 186 43 0 0 chr3L 10806633 10806656 -13736901 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 667 183 42 0 0 chr3L 10806712 10806736 -13736821 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 667 216 67 0 0 chr3L 10806889 10806919 -13736638 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 667 233 310 0 20 chr3L 10807176 10807278 -13736279 + A-rich Low_complexity Low_complexity 4 103 0 3 667 23 0 0 0 chr3L 10809154 10809177 -13734380 + AT_rich Low_complexity Low_complexity 1 23 0 3 667 180 111 0 0 chr3L 10809917 10809944 -13733613 + (CTCA)n Simple_repeat Simple_repeat 3 29 0 3 667 38 0 0 0 chr3L 10810470 10810508 -13733049 + AT_rich Low_complexity Low_complexity 1 38 0 3 667 192 77 0 0 chr3L 10810835 10810861 -13732696 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 667 186 150 0 0 chr3L 10811254 10811294 -13732263 + (CCCA)n Simple_repeat Simple_repeat 2 41 0 3 667 21 0 0 0 chr3L 10813629 10813650 -13729907 + AT_rich Low_complexity Low_complexity 1 21 0 3 667 189 0 0 0 chr3L 10814495 10814516 -13729041 + (CAA)n Simple_repeat Simple_repeat 1 21 0 3 667 218 95 24 0 chr3L 10817317 10817359 -13726198 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 667 204 156 43 43 chr3L 10817577 10817624 -13725933 + (CAGA)n Simple_repeat Simple_repeat 3 49 0 3 667 224 208 0 0 chr3L 10818509 10818562 -13724995 + (CCA)n Simple_repeat Simple_repeat 3 55 0 3 667 34 0 0 0 chr3L 10819869 10819903 -13723654 + AT_rich Low_complexity Low_complexity 1 34 0 3 667 302 125 0 45 chr3L 10820963 10821030 -13722527 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 667 23 33 0 0 chr3L 10823939 10823969 -13719588 + AT_rich Low_complexity Low_complexity 1 30 0 3 667 23 33 0 0 chr3L 10825028 10825058 -13718499 + AT_rich Low_complexity Low_complexity 1 30 0 3 667 198 71 0 0 chr3L 10825940 10825968 -13717589 + (TTTCC)n Simple_repeat Simple_repeat 2 29 0 3 667 201 39 0 0 chr3L 10826074 10826100 -13717457 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 667 22 0 0 0 chr3L 10827453 10827475 -13716082 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 22 35 0 0 chr3L 10830284 10830313 -13713244 + AT_rich Low_complexity Low_complexity 1 29 0 3 667 29 0 0 0 chr3L 10830654 10830683 -13712874 + AT_rich Low_complexity Low_complexity 1 29 0 3 667 25 0 0 0 chr3L 10832336 10832361 -13711196 + AT_rich Low_complexity Low_complexity 1 25 0 3 667 40 0 0 0 chr3L 10832383 10832423 -13711134 + AT_rich Low_complexity Low_complexity 1 40 0 3 667 214 125 35 35 chr3L 10834688 10834746 -13708811 + (TAAA)n Simple_repeat Simple_repeat 3 60 0 3 667 28 0 0 0 chr3L 10836532 10836560 -13706997 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 226 188 0 40 chr3L 10838096 10838146 -13705411 + (CCA)n Simple_repeat Simple_repeat 3 50 0 3 667 209 33 33 0 chr3L 10842985 10843015 -13700542 + (TTG)n Simple_repeat Simple_repeat 3 33 0 3 667 252 154 0 0 chr3L 10843276 10843328 -13700229 + (TTG)n Simple_repeat Simple_repeat 1 52 0 3 667 221 157 59 0 chr3L 10844445 10844496 -13699061 + (CACCAT)n Simple_repeat Simple_repeat 1 54 0 3 667 225 319 0 0 chr3L 10844655 10844724 -13698833 + (TTCGGG)n Simple_repeat Simple_repeat 2 70 0 3 667 22 0 0 0 chr3L 10845008 10845030 -13698527 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 23 0 0 0 chr3L 10845405 10845428 -13698129 + AT_rich Low_complexity Low_complexity 1 23 0 3 667 192 77 0 0 chr3L 10845564 10845590 -13697967 + (CGAG)n Simple_repeat Simple_repeat 3 28 0 3 667 189 147 0 0 chr3L 10845703 10845737 -13697820 + (TTCGG)n Simple_repeat Simple_repeat 4 37 0 3 667 28 29 0 0 chr3L 10846704 10846739 -13696818 + AT_rich Low_complexity Low_complexity 1 35 0 3 667 251 194 0 100 chr3L 10847154 10847234 -13696323 + ROO_I LTR Pao 650 721 -7535 3 667 353 97 0 31 chr3L 10847521 10847585 -13695972 + (CTG)n Simple_repeat Simple_repeat 3 64 0 3 667 195 42 0 0 chr3L 10847636 10847660 -13695897 + (CTG)n Simple_repeat Simple_repeat 1 24 0 3 667 305 128 0 95 chr3L 10847707 10847802 -13695755 - ROO_I LTR Pao -7518 738 653 3 667 336 177 10 30 chr3L 10848786 10848885 -13694672 + ROO_I LTR Pao 641 737 -7519 3 667 28 48 0 0 chr3L 10849088 10849130 -13694427 + AT_rich Low_complexity Low_complexity 1 42 0 3 667 205 250 0 20 chr3L 10849223 10849272 -13694285 + (CCCGAA)n Simple_repeat Simple_repeat 4 51 0 3 667 202 225 0 0 chr3L 10849308 10849348 -13694209 + (CAT)n Simple_repeat Simple_repeat 2 41 0 3 667 205 200 20 0 chr3L 10849534 10849584 -13693973 + (TCG)n Simple_repeat Simple_repeat 2 52 0 3 667 261 57 0 0 chr3L 10849750 10849785 -13693772 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 667 229 213 0 0 chr3L 10850497 10850544 -13693013 + (CA)n Simple_repeat Simple_repeat 2 48 0 3 667 24 0 0 0 chr3L 10851141 10851165 -13692392 + AT_rich Low_complexity Low_complexity 1 24 0 3 667 211 234 7 72 chr3L 10851404 10851542 -13692015 + A-rich Low_complexity Low_complexity 4 132 0 3 667 180 111 0 0 chr3L 10851873 10851900 -13691657 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3 667 194 143 0 20 chr3L 10852052 10852102 -13691455 + (CAA)n Simple_repeat Simple_repeat 3 51 0 3 667 213 163 0 0 chr3L 10852199 10852248 -13691309 + A-rich Low_complexity Low_complexity 1 49 0 3 667 30 32 0 60 chr3L 10853002 10853069 -13690488 + AT_rich Low_complexity Low_complexity 1 63 0 3 667 201 138 0 0 chr3L 10856698 10856727 -13686830 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 3 667 232 280 0 36 chr3L 10859671 10859782 -13683775 + A-rich Low_complexity Low_complexity 2 108 0 3 667 276 208 29 38 chr3L 10861328 10861433 -13682124 + T-rich Low_complexity Low_complexity 5 108 0 3 667 21 57 0 0 chr3L 10861891 10861926 -13681631 + AT_rich Low_complexity Low_complexity 1 35 0 3 667 215 200 0 0 chr3L 10863235 10863275 -13680282 + (CAG)n Simple_repeat Simple_repeat 2 41 0 3 667 267 182 9 66 chr3L 10863280 10863386 -13680171 + ROO_I LTR Pao 639 738 -7518 3 667 336 138 0 0 chr3L 10863591 10863656 -13679901 + (CAG)n Simple_repeat Simple_repeat 1 65 0 3 667 183 80 0 0 chr3L 10864621 10864646 -13678911 + (CAG)n Simple_repeat Simple_repeat 1 25 0 3 667 210 150 0 0 chr3L 10867720 10867776 -13675781 + (A)n Simple_repeat Simple_repeat 1 56 0 3 667 28 0 0 0 chr3L 10867861 10867889 -13675668 + AT_rich Low_complexity Low_complexity 1 28 0 3 667 22 0 0 0 chr3L 10867982 10868004 -13675553 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 207 188 0 72 chr3L 10868165 10868234 -13675323 + A-rich Low_complexity Low_complexity 2 65 0 3 667 22 0 0 0 chr3L 10868326 10868348 -13675209 + AT_rich Low_complexity Low_complexity 1 22 0 3 667 264 100 0 0 chr3L 10868832 10868872 -13674685 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 667 23 0 0 0 chr3L 10873761 10873784 -13669773 + AT_rich Low_complexity Low_complexity 1 23 0 3 667 23 0 0 0 chr3L 10876613 10876636 -13666921 + AT_rich Low_complexity Low_complexity 1 23 0 3 668 36 53 0 0 chr3L 10879293 10879350 -13664207 + AT_rich Low_complexity Low_complexity 1 57 0 3 668 206 118 0 0 chr3L 10879376 10879410 -13664147 + (CAAAAA)n Simple_repeat Simple_repeat 3 36 0 3 668 200 86 29 0 chr3L 10879662 10879697 -13663860 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3 668 204 159 0 22 chr3L 10880335 10880380 -13663177 + A-rich Low_complexity Low_complexity 4 47 0 3 668 21 71 0 0 chr3L 10880451 10880493 -13663064 + AT_rich Low_complexity Low_complexity 1 42 0 3 668 34 0 0 0 chr3L 10882682 10882716 -13660841 + AT_rich Low_complexity Low_complexity 1 34 0 3 668 268 62 78 0 chr3L 10882783 10882847 -13660710 + (TA)n Simple_repeat Simple_repeat 2 70 0 3 668 21 95 0 0 chr3L 10884486 10884549 -13659008 + AT_rich Low_complexity Low_complexity 1 63 0 3 668 375 208 367 13 chr3L 10885971 10886140 -13657417 + DNAREP1_DM LINE Penelope 366 594 0 3 668 40 59 0 0 chr3L 10886611 10886679 -13656878 + AT_rich Low_complexity Low_complexity 1 68 0 3 668 22 80 0 0 chr3L 10886699 10886749 -13656808 + AT_rich Low_complexity Low_complexity 1 50 0 3 668 27 0 0 0 chr3L 10888483 10888510 -13655047 + AT_rich Low_complexity Low_complexity 1 27 0 3 668 234 0 0 0 chr3L 10891211 10891237 -13652320 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 668 26 30 0 0 chr3L 10894862 10894895 -13648662 + AT_rich Low_complexity Low_complexity 1 33 0 3 668 22 35 0 0 chr3L 10895043 10895072 -13648485 + AT_rich Low_complexity Low_complexity 1 29 0 3 668 24 32 0 0 chr3L 10895836 10895867 -13647690 + AT_rich Low_complexity Low_complexity 1 31 0 3 668 22 0 0 0 chr3L 10896531 10896553 -13647004 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 33 0 0 0 chr3L 10896638 10896671 -13646886 + AT_rich Low_complexity Low_complexity 1 33 0 3 668 207 189 0 0 chr3L 10897052 10897089 -13646468 + (ATG)n Simple_repeat Simple_repeat 1 37 0 3 668 23 0 0 0 chr3L 10900175 10900198 -13643359 + AT_rich Low_complexity Low_complexity 1 23 0 3 668 201 74 0 0 chr3L 10900711 10900738 -13642819 + (CAGA)n Simple_repeat Simple_repeat 1 27 0 3 668 21 0 0 0 chr3L 10902887 10902908 -13640649 + AT_rich Low_complexity Low_complexity 1 21 0 3 668 180 111 0 0 chr3L 10903704 10903731 -13639826 + (CCGAG)n Simple_repeat Simple_repeat 5 31 0 3 668 22 0 0 0 chr3L 10904948 10904970 -13638587 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 22 0 0 0 chr3L 10905811 10905833 -13637724 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 21 0 0 0 chr3L 10908182 10908203 -13635354 + AT_rich Low_complexity Low_complexity 1 21 0 3 668 238 196 20 0 chr3L 10909012 10909063 -13634494 + (CTTTG)n Simple_repeat Simple_repeat 3 54 0 3 668 26 0 0 0 chr3L 10909444 10909470 -13634087 + AT_rich Low_complexity Low_complexity 1 26 0 3 668 22 0 0 0 chr3L 10910511 10910533 -13633024 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 29 0 0 0 chr3L 10910741 10910770 -13632787 + AT_rich Low_complexity Low_complexity 1 29 0 3 668 200 122 24 0 chr3L 10913295 10913336 -13630221 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 668 216 67 0 0 chr3L 10913543 10913573 -13629984 + (CA)n Simple_repeat Simple_repeat 1 30 0 3 668 33 0 0 0 chr3L 10916268 10916301 -13627256 + AT_rich Low_complexity Low_complexity 1 33 0 3 668 27 49 0 0 chr3L 10917000 10917041 -13626516 + AT_rich Low_complexity Low_complexity 1 41 0 3 668 21 36 0 0 chr3L 10919701 10919729 -13623828 + AT_rich Low_complexity Low_complexity 1 28 0 3 668 23 33 0 0 chr3L 10920685 10920715 -13622842 + AT_rich Low_complexity Low_complexity 1 30 0 3 668 213 224 0 0 chr3L 10920849 10920907 -13622650 + (CAGTT)n Simple_repeat Simple_repeat 3 60 0 3 668 266 143 16 0 chr3L 10923320 10923383 -13620174 + (CATCC)n Simple_repeat Simple_repeat 1 64 0 3 668 23 33 0 0 chr3L 10924703 10924733 -13618824 + AT_rich Low_complexity Low_complexity 1 30 0 3 668 280 227 11 0 chr3L 10924993 10925081 -13618476 - ROO_I LTR Pao -7508 748 660 3 668 266 226 42 21 chr3L 10925161 10925256 -13618301 + (TTG)n Simple_repeat Simple_repeat 1 97 0 3 668 283 247 21 0 chr3L 10926811 10926904 -13616653 + ROO_I LTR Pao 655 749 -7507 3 668 216 207 0 33 chr3L 10927205 10927265 -13616292 + (CAG)n Simple_repeat Simple_repeat 1 58 0 3 668 195 42 0 0 chr3L 10927347 10927371 -13616186 + (CTG)n Simple_repeat Simple_repeat 3 26 0 3 668 207 114 0 0 chr3L 10927451 10927486 -13616071 + (CAG)n Simple_repeat Simple_repeat 1 35 0 3 668 288 120 0 0 chr3L 10927638 10927688 -13615869 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 668 189 121 0 0 chr3L 10928086 10928119 -13615438 + (T)n Simple_repeat Simple_repeat 1 33 0 3 668 200 238 0 0 chr3L 10929808 10929850 -13613707 + (CAA)n Simple_repeat Simple_repeat 3 44 0 3 668 22 0 0 0 chr3L 10931137 10931159 -13612398 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 246 268 20 30 chr3L 10931325 10931425 -13612132 + T-rich Low_complexity Low_complexity 2 100 0 3 668 192 77 0 0 chr3L 10931541 10931567 -13611990 + (CAG)n Simple_repeat Simple_repeat 1 26 0 3 668 189 0 0 0 chr3L 10933329 10933350 -13610207 + (CTG)n Simple_repeat Simple_repeat 3 23 0 3 668 213 39 0 0 chr3L 10933767 10933793 -13609764 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 668 214 240 0 0 chr3L 10934880 10934930 -13608627 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 668 318 87 0 0 chr3L 10935010 10935056 -13608501 + (CAGC)n Simple_repeat Simple_repeat 2 47 0 3 668 405 0 0 0 chr3L 10935194 10935239 -13608318 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 668 24 109 0 0 chr3L 10935757 10935858 -13607699 + AT_rich Low_complexity Low_complexity 1 101 0 3 668 183 80 0 0 chr3L 10936887 10936912 -13606645 + (CTG)n Simple_repeat Simple_repeat 1 25 0 3 668 23 86 0 0 chr3L 10937151 10937209 -13606348 + AT_rich Low_complexity Low_complexity 1 58 0 3 668 294 73 0 0 chr3L 10937576 10937617 -13605940 + (CCA)n Simple_repeat Simple_repeat 1 41 0 3 668 180 111 0 62 chr3L 10937739 10937787 -13605770 + (CTG)n Simple_repeat Simple_repeat 3 47 0 3 668 219 69 0 0 chr3L 10938080 10938109 -13605448 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3 668 243 0 0 0 chr3L 10939816 10939843 -13603714 + (GAGTG)n Simple_repeat Simple_repeat 5 31 0 3 668 207 214 0 0 chr3L 10942443 10942485 -13601072 + T-rich Low_complexity Low_complexity 1 42 0 3 668 300 143 77 13 chr3L 10942663 10942741 -13600816 + ROO_I LTR Pao 642 724 -7532 3 668 204 158 0 0 chr3L 10942932 10942970 -13600587 + (CAG)n Simple_repeat Simple_repeat 1 38 0 3 668 214 183 23 47 chr3L 10944296 10944382 -13599175 + (TAAA)n Simple_repeat Simple_repeat 1 84 0 3 668 213 121 0 0 chr3L 10944592 10944625 -13598932 + (CTG)n Simple_repeat Simple_repeat 3 35 0 3 668 22 0 0 0 chr3L 10946960 10946982 -13596575 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 23 0 0 0 chr3L 10948441 10948464 -13595093 + AT_rich Low_complexity Low_complexity 1 23 0 3 668 49 32 0 0 chr3L 10949396 10949459 -13594098 + AT_rich Low_complexity Low_complexity 1 63 0 3 668 27 62 0 0 chr3L 10950743 10950791 -13592766 + AT_rich Low_complexity Low_complexity 1 48 0 3 668 228 228 0 0 chr3L 10956906 10956963 -13586594 + (CCA)n Simple_repeat Simple_repeat 1 57 0 3 668 191 81 54 0 chr3L 10958710 10958747 -13584810 + (GTATG)n Simple_repeat Simple_repeat 5 43 0 3 668 234 208 0 0 chr3L 10959557 10959610 -13583947 + (CCCGAA)n Simple_repeat Simple_repeat 1 53 0 3 668 21 104 0 0 chr3L 10960175 10960252 -13583305 + AT_rich Low_complexity Low_complexity 1 77 0 3 668 267 103 0 0 chr3L 10960558 10960597 -13582960 + (TATAG)n Simple_repeat Simple_repeat 2 40 0 3 668 259 191 15 0 chr3L 10960921 10960989 -13582568 + ROO_I LTR Pao 657 725 -7531 3 668 243 103 0 0 chr3L 10963246 10963285 -13580272 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 668 21 36 0 0 chr3L 10963929 10963957 -13579600 + AT_rich Low_complexity Low_complexity 1 28 0 3 668 35 24 0 0 chr3L 10965857 10965899 -13577658 + AT_rich Low_complexity Low_complexity 1 42 0 3 668 204 236 42 0 chr3L 10967222 10967294 -13576263 + (CTG)n Simple_repeat Simple_repeat 3 77 0 3 668 23 0 0 0 chr3L 10969638 10969661 -13573896 + AT_rich Low_complexity Low_complexity 1 23 0 3 668 253 190 0 0 chr3L 10969942 10970000 -13573557 - ROO_I LTR Pao -7524 732 675 3 668 231 103 0 0 chr3L 10970250 10970289 -13573268 + (CAGT)n Simple_repeat Simple_repeat 1 39 0 3 668 183 42 0 0 chr3L 10970907 10970931 -13572626 + (CATCG)n Simple_repeat Simple_repeat 1 24 0 3 668 22 0 0 0 chr3L 10971551 10971573 -13571984 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 265 24 23 23 chr3L 10972169 10972212 -13571345 + (TTG)n Simple_repeat Simple_repeat 2 44 0 3 668 22 0 0 0 chr3L 10974381 10974403 -13569154 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 227 136 68 0 chr3L 10974897 10974941 -13568616 + (TTAAA)n Simple_repeat Simple_repeat 3 49 0 3 668 228 67 0 0 chr3L 10977500 10977530 -13566027 + (TTA)n Simple_repeat Simple_repeat 2 31 0 3 668 218 167 0 0 chr3L 10977645 10977681 -13565876 + (CCG)n Simple_repeat Simple_repeat 2 37 0 3 668 21 57 0 0 chr3L 10978561 10978596 -13564961 + AT_rich Low_complexity Low_complexity 1 35 0 3 668 21 0 0 0 chr3L 10981407 10981428 -13562129 + AT_rich Low_complexity Low_complexity 1 21 0 3 668 21 36 0 0 chr3L 10983120 10983148 -13560409 + AT_rich Low_complexity Low_complexity 1 28 0 3 668 216 67 0 0 chr3L 10984061 10984091 -13559466 + (CAG)n Simple_repeat Simple_repeat 3 32 0 3 668 327 113 0 0 chr3L 10984178 10984231 -13559326 + (CTG)n Simple_repeat Simple_repeat 1 53 0 3 668 186 167 0 0 chr3L 10984552 10984588 -13558969 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 668 23 0 0 0 chr3L 10985148 10985171 -13558386 + AT_rich Low_complexity Low_complexity 1 23 0 3 668 205 172 15 15 chr3L 10986548 10986613 -13556944 + (CAA)n Simple_repeat Simple_repeat 3 67 0 3 668 186 71 0 0 chr3L 10988139 10988167 -13555390 + (T)n Simple_repeat Simple_repeat 1 28 0 3 668 27 0 0 0 chr3L 10988927 10988954 -13554603 + AT_rich Low_complexity Low_complexity 1 27 0 3 668 202 222 37 0 chr3L 10991021 10991075 -13552482 + (CAG)n Simple_repeat Simple_repeat 3 58 0 3 668 303 104 0 0 chr3L 10991394 10991442 -13552115 + (CTG)n Simple_repeat Simple_repeat 3 50 0 3 668 219 139 0 0 chr3L 10992104 10992140 -13551417 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 668 234 239 0 0 chr3L 10993110 10993156 -13550401 + GA-rich Low_complexity Low_complexity 2 47 0 3 668 186 143 0 0 chr3L 10997201 10997236 -13546321 + (CCA)n Simple_repeat Simple_repeat 1 35 0 3 668 273 29 0 0 chr3L 10998230 10998264 -13545293 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 668 313 287 0 0 chr3L 10999665 10999787 -13543770 + T-rich Low_complexity Low_complexity 1 122 0 3 668 252 59 0 0 chr3L 11000813 11000847 -13542710 + (GA)n Simple_repeat Simple_repeat 2 35 0 3 668 294 50 0 0 chr3L 11001120 11001160 -13542397 + (ATG)n Simple_repeat Simple_repeat 1 40 0 3 668 22 0 0 0 chr3L 11001450 11001472 -13542085 + AT_rich Low_complexity Low_complexity 1 22 0 3 668 21 0 0 0 chr3L 11003036 11003057 -13540500 + AT_rich Low_complexity Low_complexity 1 21 0 3 668 22 35 0 0 chr3L 11003191 11003220 -13540337 + AT_rich Low_complexity Low_complexity 1 29 0 3 668 207 0 0 0 chr3L 11004032 11004055 -13539502 + (TATG)n Simple_repeat Simple_repeat 1 23 0 3 668 221 197 52 13 chr3L 11004981 11005058 -13538499 + (CCA)n Simple_repeat Simple_repeat 1 80 0 3 668 264 174 20 80 chr3L 11005704 11005804 -13537753 + ROO_I LTR Pao 641 734 -7522 3 668 23 78 0 0 chr3L 11006149 11006200 -13537357 + AT_rich Low_complexity Low_complexity 1 51 0 3 668 24 0 0 0 chr3L 11007472 11007496 -13536061 + AT_rich Low_complexity Low_complexity 1 24 0 3 668 21 57 0 0 chr3L 11007585 11007620 -13535937 + AT_rich Low_complexity Low_complexity 1 35 0 3 668 21 57 0 0 chr3L 11007700 11007735 -13535822 + AT_rich Low_complexity Low_complexity 1 35 0 3 668 23 0 0 0 chr3L 11007759 11007782 -13535775 + AT_rich Low_complexity Low_complexity 1 23 0 3 668 210 71 0 0 chr3L 11008048 11008076 -13535481 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 3 668 36 77 0 0 chr3L 11009830 11009908 -13533649 + AT_rich Low_complexity Low_complexity 1 78 0 3 669 204 255 0 0 chr3L 11012277 11012324 -13531233 + T-rich Low_complexity Low_complexity 1 47 0 3 669 230 222 0 0 chr3L 11013653 11013698 -13529859 + (CTG)n Simple_repeat Simple_repeat 1 45 0 3 669 204 200 0 0 chr3L 11013845 11013895 -13529662 + (TTG)n Simple_repeat Simple_repeat 1 50 0 3 669 291 214 24 12 chr3L 11014032 11014117 -13529440 - ROO_I LTR Pao -7530 726 641 3 669 234 0 0 0 chr3L 11014310 11014336 -13529221 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 669 245 184 20 0 chr3L 11015195 11015244 -13528313 + (CAG)n Simple_repeat Simple_repeat 1 50 0 3 669 240 207 0 0 chr3L 11015357 11015415 -13528142 - ROO_I LTR Pao -7542 714 657 3 669 225 180 0 0 chr3L 11015794 11015844 -13527713 + (CAG)n Simple_repeat Simple_repeat 3 52 0 3 669 31 99 0 0 chr3L 11016050 11016151 -13527406 + AT_rich Low_complexity Low_complexity 1 101 0 3 669 35 41 0 0 chr3L 11020458 11020507 -13523050 + AT_rich Low_complexity Low_complexity 1 49 0 3 669 29 47 0 0 chr3L 11022502 11022545 -13521012 + AT_rich Low_complexity Low_complexity 1 43 0 3 669 189 0 0 0 chr3L 11023431 11023452 -13520105 + (ATG)n Simple_repeat Simple_repeat 2 22 0 3 669 210 150 0 0 chr3L 11024099 11024139 -13519418 + (A)n Simple_repeat Simple_repeat 1 40 0 3 669 217 250 0 42 chr3L 11024835 11024906 -13518651 + G-rich Low_complexity Low_complexity 3 70 0 3 669 53 40 0 0 chr3L 11025002 11025076 -13518481 + AT_rich Low_complexity Low_complexity 1 74 0 3 669 207 328 0 0 chr3L 11026570 11026637 -13516920 + G-rich Low_complexity Low_complexity 1 67 0 3 669 180 0 0 0 chr3L 11028281 11028301 -13515256 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 669 252 59 0 0 chr3L 11029859 11029893 -13513664 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 669 22 56 0 0 chr3L 11031649 11031685 -13511872 + AT_rich Low_complexity Low_complexity 1 36 0 3 669 21 71 0 0 chr3L 11034733 11034775 -13508782 + AT_rich Low_complexity Low_complexity 1 42 0 3 669 180 111 0 0 chr3L 11035136 11035163 -13508394 + (CAGT)n Simple_repeat Simple_repeat 4 30 0 3 669 23 78 0 0 chr3L 11035410 11035461 -13508096 + AT_rich Low_complexity Low_complexity 1 51 0 3 669 34 0 0 0 chr3L 11036002 11036036 -13507521 + AT_rich Low_complexity Low_complexity 1 34 0 3 669 25 31 0 0 chr3L 11036284 11036316 -13507241 + AT_rich Low_complexity Low_complexity 1 32 0 3 669 180 0 0 0 chr3L 11038425 11038445 -13505112 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3 669 284 173 0 39 chr3L 11039806 11039884 -13503673 + GA-rich Low_complexity Low_complexity 1 75 0 3 669 24 0 0 0 chr3L 11044595 11044619 -13498938 + AT_rich Low_complexity Low_complexity 1 24 0 3 669 213 39 0 0 chr3L 11045774 11045800 -13497757 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 669 208 139 0 0 chr3L 11046063 11046099 -13497458 + (A)n Simple_repeat Simple_repeat 1 36 0 3 669 216 0 0 0 chr3L 11049924 11049948 -13493609 + (ACTCG)n Simple_repeat Simple_repeat 3 26 0 3 669 31 0 0 0 chr3L 11050833 11050864 -13492693 + AT_rich Low_complexity Low_complexity 1 31 0 3 669 23 33 0 0 chr3L 11055835 11055865 -13487692 + AT_rich Low_complexity Low_complexity 1 30 0 3 669 22 0 0 0 chr3L 11057893 11057915 -13485642 + AT_rich Low_complexity Low_complexity 1 22 0 3 669 22 0 0 0 chr3L 11061984 11062006 -13481551 + AT_rich Low_complexity Low_complexity 1 22 0 3 669 28 0 0 0 chr3L 11063284 11063312 -13480245 + AT_rich Low_complexity Low_complexity 1 28 0 3 669 22 80 0 0 chr3L 11067585 11067635 -13475922 + AT_rich Low_complexity Low_complexity 1 50 0 3 669 21 0 0 0 chr3L 11067729 11067750 -13475807 + AT_rich Low_complexity Low_complexity 1 21 0 3 669 267 103 0 0 chr3L 11071211 11071250 -13472307 + (ATG)n Simple_repeat Simple_repeat 3 41 0 3 669 22 70 0 0 chr3L 11077285 11077328 -13466229 + AT_rich Low_complexity Low_complexity 1 43 0 3 669 12550 90 3 2 chr3L 11080211 11081945 -13461612 - S_DM DNA Tc1 0 1736 1 3 669 22 0 0 0 chr3L 11083380 11083402 -13460155 + AT_rich Low_complexity Low_complexity 1 22 0 3 669 231 170 0 0 chr3L 11084122 11084169 -13459388 + (CTG)n Simple_repeat Simple_repeat 3 49 0 3 669 240 311 0 0 chr3L 11084404 11084478 -13459079 + (TTG)n Simple_repeat Simple_repeat 2 75 0 3 669 21 0 0 0 chr3L 11091398 11091419 -13452138 + AT_rich Low_complexity Low_complexity 1 21 0 3 669 255 175 0 0 chr3L 11096724 11096781 -13446776 + (TGG)n Simple_repeat Simple_repeat 2 58 0 3 669 24 53 0 0 chr3L 11097264 11097302 -13446255 + AT_rich Low_complexity Low_complexity 1 38 0 3 669 620 176 245 84 chr3L 11097358 11097631 -13445926 - DNAREP1_DM LINE Penelope -25 569 253 3 669 29 28 0 0 chr3L 11098178 11098214 -13445343 + AT_rich Low_complexity Low_complexity 1 36 0 3 669 15221 2 0 0 chr3L 11098450 11100077 -13443480 + BS2 LINE Jockey 3095 4721 0 3 669 24 0 0 0 chr3L 11100077 11100101 -13443456 + AT_rich Low_complexity Low_complexity 1 24 0 3 669 237 228 0 0 chr3L 11101538 11101595 -13441962 + (CCA)n Simple_repeat Simple_repeat 3 59 0 3 669 320 103 17 0 chr3L 11107454 11107512 -13436045 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 669 190 116 23 23 chr3L 11107563 11107607 -13435950 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 3 669 288 77 0 0 chr3L 11108612 11108651 -13434906 + (CTG)n Simple_repeat Simple_repeat 1 39 0 3 669 195 42 0 0 chr3L 11109981 11110005 -13433552 + (CTG)n Simple_repeat Simple_repeat 3 26 0 3 669 248 214 0 0 chr3L 11110038 11110094 -13433463 + (CTG)n Simple_repeat Simple_repeat 1 56 0 3 669 239 222 19 48 chr3L 11110770 11110874 -13432683 - ROO_I LTR Pao -7510 746 646 3 669 314 225 0 9 chr3L 11110987 11111099 -13432458 + (TTG)n Simple_repeat Simple_repeat 3 113 0 3 669 195 42 0 0 chr3L 11111676 11111700 -13431857 + (CA)n Simple_repeat Simple_repeat 2 25 0 3 669 34 42 0 0 chr3L 11112312 11112360 -13431197 + AT_rich Low_complexity Low_complexity 1 48 0 3 669 200 308 0 32 chr3L 11112920 11113014 -13430543 + (CATA)n Simple_repeat Simple_repeat 1 91 0 3 669 204 179 0 0 chr3L 11113390 11113429 -13430128 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 669 231 167 0 0 chr3L 11118713 11118755 -13424802 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 3 669 21 36 0 0 chr3L 11119162 11119190 -13424367 + AT_rich Low_complexity Low_complexity 1 28 0 3 669 202 324 0 0 chr3L 11124126 11124228 -13419329 + (CCA)n Simple_repeat Simple_repeat 1 102 0 3 669 22 80 0 0 chr3L 11124952 11125002 -13418555 + AT_rich Low_complexity Low_complexity 1 50 0 3 669 210 71 0 0 chr3L 11126035 11126063 -13417494 + (CAG)n Simple_repeat Simple_repeat 2 29 0 3 669 22 35 0 0 chr3L 11127548 11127577 -13415980 + AT_rich Low_complexity Low_complexity 1 29 0 3 669 30 45 0 0 chr3L 11128543 11128587 -13414970 + AT_rich Low_complexity Low_complexity 1 44 0 3 669 219 279 24 16 chr3L 11129610 11129734 -13413823 + T-rich Low_complexity Low_complexity 2 126 0 3 669 24 32 0 0 chr3L 11137666 11137697 -13405860 + AT_rich Low_complexity Low_complexity 1 31 0 3 669 21 0 0 0 chr3L 11137832 11137853 -13405704 + AT_rich Low_complexity Low_complexity 1 21 0 3 669 192 40 0 0 chr3L 11139819 11139844 -13403713 + (GTATG)n Simple_repeat Simple_repeat 5 29 0 3 670 21 0 0 0 chr3L 11142103 11142124 -13401433 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 23 0 0 0 chr3L 11142776 11142799 -13400758 + AT_rich Low_complexity Low_complexity 1 23 0 3 670 189 0 0 0 chr3L 11144315 11144336 -13399221 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 670 22 0 0 0 chr3L 11145934 11145956 -13397601 + AT_rich Low_complexity Low_complexity 1 22 0 3 670 25 83 0 0 chr3L 11147869 11147929 -13395628 + AT_rich Low_complexity Low_complexity 1 60 0 3 670 26 0 0 0 chr3L 11148816 11148842 -13394715 + AT_rich Low_complexity Low_complexity 1 26 0 3 670 207 0 0 0 chr3L 11149933 11149956 -13393601 + (A)n Simple_repeat Simple_repeat 1 23 0 3 670 263 227 0 39 chr3L 11152567 11152645 -13390912 + ROO_I LTR Pao 669 743 -7513 3 670 32 26 0 0 chr3L 11152797 11152836 -13390721 + AT_rich Low_complexity Low_complexity 1 39 0 3 670 28 0 0 0 chr3L 11154542 11154570 -13388987 + AT_rich Low_complexity Low_complexity 1 28 0 3 670 279 171 40 0 chr3L 11155065 11155141 -13388416 + ROO_I LTR Pao 651 729 -7527 3 670 216 0 0 0 chr3L 11155349 11155373 -13388184 + (CAG)n Simple_repeat Simple_repeat 1 24 0 3 670 252 0 0 0 chr3L 11156820 11156848 -13386709 + (CACAC)n Simple_repeat Simple_repeat 3 30 0 3 670 21 0 0 0 chr3L 11167303 11167324 -13376233 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 24 32 0 0 chr3L 11168363 11168394 -13375163 + AT_rich Low_complexity Low_complexity 1 31 0 3 670 292 284 11 0 chr3L 11168713 11168808 -13374749 + (TGG)n Simple_repeat Simple_repeat 2 97 0 3 670 23 33 0 0 chr3L 11169062 11169092 -13374465 + AT_rich Low_complexity Low_complexity 1 30 0 3 670 30 59 0 0 chr3L 11169194 11169245 -13374312 + AT_rich Low_complexity Low_complexity 1 51 0 3 670 21 36 0 0 chr3L 11171711 11171739 -13371818 + AT_rich Low_complexity Low_complexity 1 28 0 3 670 24 106 0 0 chr3L 11175085 11175179 -13368378 + AT_rich Low_complexity Low_complexity 1 94 0 3 670 202 302 0 30 chr3L 11175346 11175445 -13368112 + (TTG)n Simple_repeat Simple_repeat 1 96 0 3 670 240 175 0 0 chr3L 11175584 11175647 -13367910 + (TTG)n Simple_repeat Simple_repeat 3 65 0 3 670 215 227 0 0 chr3L 11177361 11177405 -13366152 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 3 670 210 208 0 0 chr3L 11178495 11178548 -13365009 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 3 670 30 0 0 0 chr3L 11178962 11178992 -13364565 + AT_rich Low_complexity Low_complexity 1 30 0 3 670 31 0 0 0 chr3L 11180599 11180630 -13362927 + AT_rich Low_complexity Low_complexity 1 31 0 3 670 21 0 0 0 chr3L 11180788 11180809 -13362748 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 204 40 0 0 chr3L 11185786 11185811 -13357746 + (TTCTG)n Simple_repeat Simple_repeat 4 28 0 3 670 25 0 0 0 chr3L 11186049 11186074 -13357483 + AT_rich Low_complexity Low_complexity 1 25 0 3 670 22 0 0 0 chr3L 11188734 11188756 -13354801 + AT_rich Low_complexity Low_complexity 1 22 0 3 670 39 38 0 0 chr3L 11189033 11189086 -13354471 + AT_rich Low_complexity Low_complexity 1 53 0 3 670 198 118 0 0 chr3L 11189891 11189925 -13353632 + (TTG)n Simple_repeat Simple_repeat 2 35 0 3 670 225 237 0 0 chr3L 11190136 11190195 -13353362 + GA-rich Low_complexity Low_complexity 1 59 0 3 670 208 147 0 0 chr3L 11190221 11190255 -13353302 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 670 25 83 0 0 chr3L 11190800 11190860 -13352697 + AT_rich Low_complexity Low_complexity 1 60 0 3 670 21 100 0 0 chr3L 11190916 11190986 -13352571 + AT_rich Low_complexity Low_complexity 1 70 0 3 670 28 29 0 0 chr3L 11193308 11193343 -13350214 + AT_rich Low_complexity Low_complexity 1 35 0 3 670 25 0 0 0 chr3L 11193663 11193688 -13349869 + AT_rich Low_complexity Low_complexity 1 25 0 3 670 195 100 0 0 chr3L 11194474 11194504 -13349053 + (CAG)n Simple_repeat Simple_repeat 1 30 0 3 670 24 32 0 0 chr3L 11195979 11196010 -13347547 + AT_rich Low_complexity Low_complexity 1 31 0 3 670 24 53 0 0 chr3L 11198154 11198192 -13345365 + AT_rich Low_complexity Low_complexity 1 38 0 3 670 22 80 0 0 chr3L 11199245 11199295 -13344262 + AT_rich Low_complexity Low_complexity 1 50 0 3 670 22 35 0 0 chr3L 11199373 11199402 -13344155 + AT_rich Low_complexity Low_complexity 1 29 0 3 670 27 29 0 0 chr3L 11199441 11199475 -13344082 + AT_rich Low_complexity Low_complexity 1 34 0 3 670 23 33 0 0 chr3L 11207377 11207407 -13336150 + AT_rich Low_complexity Low_complexity 1 30 0 3 670 315 0 0 0 chr3L 11208799 11208834 -13334723 + (TC)n Simple_repeat Simple_repeat 1 35 0 3 670 183 129 0 0 chr3L 11209121 11209152 -13334405 + (TG)n Simple_repeat Simple_repeat 2 32 0 3 670 255 305 0 0 chr3L 11209950 11210032 -13333525 + (CAG)n Simple_repeat Simple_repeat 1 82 0 3 670 207 100 0 0 chr3L 11213511 11213541 -13330016 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 670 206 172 62 0 chr3L 11215412 11215476 -13328081 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 670 24 0 0 0 chr3L 11215626 11215650 -13327907 + AT_rich Low_complexity Low_complexity 1 24 0 3 670 21 36 0 0 chr3L 11217728 11217756 -13325801 + AT_rich Low_complexity Low_complexity 1 28 0 3 670 21 0 0 0 chr3L 11220098 11220119 -13323438 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 211 146 24 0 chr3L 11222505 11222546 -13321011 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 670 30 45 0 0 chr3L 11223636 11223680 -13319877 + AT_rich Low_complexity Low_complexity 1 44 0 3 670 21 71 0 0 chr3L 11224427 11224469 -13319088 + AT_rich Low_complexity Low_complexity 1 42 0 3 670 43 0 0 0 chr3L 11226640 11226683 -13316874 + AT_rich Low_complexity Low_complexity 1 43 0 3 670 35 78 0 0 chr3L 11228225 11228302 -13315255 + AT_rich Low_complexity Low_complexity 1 77 0 3 670 207 139 0 0 chr3L 11229185 11229221 -13314336 + (CAGT)n Simple_repeat Simple_repeat 3 38 0 3 670 216 0 0 0 chr3L 11229923 11229947 -13313610 + (ACCG)n Simple_repeat Simple_repeat 2 25 0 3 670 216 0 0 0 chr3L 11230112 11230136 -13313421 + (CAGTC)n Simple_repeat Simple_repeat 3 26 0 3 670 214 107 71 0 chr3L 11231015 11231071 -13312486 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 670 327 145 0 0 chr3L 11232383 11232452 -13311105 + (ATTCG)n Simple_repeat Simple_repeat 5 73 0 3 670 24 0 0 0 chr3L 11232831 11232855 -13310702 + AT_rich Low_complexity Low_complexity 1 24 0 3 670 324 120 0 0 chr3L 11232927 11232977 -13310580 + (TTTTA)n Simple_repeat Simple_repeat 2 51 0 3 670 240 224 0 0 chr3L 11233342 11233409 -13310148 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 670 29 0 0 0 chr3L 11233974 11234003 -13309554 + AT_rich Low_complexity Low_complexity 1 29 0 3 670 21 0 0 0 chr3L 11234191 11234212 -13309345 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 21 36 0 0 chr3L 11234685 11234713 -13308844 + AT_rich Low_complexity Low_complexity 1 28 0 3 670 26 74 0 0 chr3L 11234917 11234971 -13308586 + AT_rich Low_complexity Low_complexity 1 54 0 3 670 273 162 0 0 chr3L 11235961 11236029 -13307528 + GA-rich Low_complexity Low_complexity 2 69 0 3 670 180 0 0 0 chr3L 11238108 11238128 -13305429 + (ATG)n Simple_repeat Simple_repeat 3 22 0 3 670 306 123 0 0 chr3L 11239220 11239277 -13304280 + (TC)n Simple_repeat Simple_repeat 2 58 0 3 670 228 256 37 0 chr3L 11239313 11239395 -13304162 + (CAAA)n Simple_repeat Simple_repeat 2 86 0 3 670 328 158 13 13 chr3L 11239580 11239657 -13303900 + (CAA)n Simple_repeat Simple_repeat 1 77 0 3 670 209 205 0 0 chr3L 11240589 11240628 -13302929 + (TATG)n Simple_repeat Simple_repeat 2 40 0 3 670 22 35 0 0 chr3L 11244334 11244363 -13299194 + AT_rich Low_complexity Low_complexity 1 29 0 3 670 183 42 0 0 chr3L 11245126 11245150 -13298407 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 670 252 0 0 0 chr3L 11245728 11245756 -13297801 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 3 670 21 0 0 0 chr3L 11246249 11246270 -13297287 + AT_rich Low_complexity Low_complexity 1 21 0 3 670 398 83 0 65 chr3L 11247729 11247806 -13295751 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 670 258 176 44 0 chr3L 11248190 11248283 -13295274 + (CA)n Simple_repeat Simple_repeat 1 97 0 3 670 43 71 0 0 chr3L 11248460 11248545 -13295012 + AT_rich Low_complexity Low_complexity 1 85 0 3 670 297 187 21 42 chr3L 11248563 11248658 -13294899 + A-rich Low_complexity Low_complexity 3 95 0 3 670 210 245 0 0 chr3L 11248990 11249039 -13294518 + GA-rich Low_complexity Low_complexity 4 52 0 3 670 31 82 0 0 chr3L 11249045 11249118 -13294439 + AT_rich Low_complexity Low_complexity 1 73 0 3 670 180 0 0 0 chr3L 11249155 11249175 -13294382 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 3 670 30 59 0 0 chr3L 11249655 11249706 -13293851 + AT_rich Low_complexity Low_complexity 1 51 0 3 670 23 0 0 0 chr3L 11250319 11250342 -13293215 + AT_rich Low_complexity Low_complexity 1 23 0 3 670 190 29 57 29 chr3L 11250396 11250431 -13293126 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 3 670 267 31 0 0 chr3L 11250940 11250972 -13292585 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 670 23 0 0 0 chr3L 11251826 11251849 -13291708 + AT_rich Low_complexity Low_complexity 1 23 0 3 670 22 70 0 0 chr3L 11254209 11254252 -13289305 + AT_rich Low_complexity Low_complexity 1 43 0 3 670 245 29 0 29 chr3L 11254380 11254415 -13289142 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 670 23 68 0 0 chr3L 11254621 11254665 -13288892 + AT_rich Low_complexity Low_complexity 1 44 0 3 670 215 203 17 0 chr3L 11254920 11254979 -13288578 + (CAA)n Simple_repeat Simple_repeat 2 61 0 3 670 29 0 0 0 chr3L 11255927 11255956 -13287601 + AT_rich Low_complexity Low_complexity 1 29 0 3 670 189 0 0 0 chr3L 11256179 11256200 -13287357 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 3 670 222 105 0 0 chr3L 11256907 11256945 -13286612 + (T)n Simple_repeat Simple_repeat 1 38 0 3 670 4503 4 0 0 chr3L 11257621 11258128 -13285429 - DM176_LTR LTR Gypsy 0 507 1 3 670 10716 6 4 8 chr3L 11258128 11259581 -13283976 - DM176_I LTR Gypsy 0 6420 4666 3 670 38021 1 0 14 chr3L 11259581 11264004 -13279553 - DM176_I LTR Gypsy -2058 4362 1 3 670 4503 4 0 0 chr3L 11264004 11264511 -13279046 - DM176_LTR LTR Gypsy 0 507 1 3 670 24 96 0 0 chr3L 11265854 11265927 -13277630 + AT_rich Low_complexity Low_complexity 1 73 0 3 670 220 136 0 64 chr3L 11266532 11266579 -13276978 - HSATII Satellite Satellite -102 68 25 3 670 23 68 0 0 chr3L 11268142 11268186 -13275371 + AT_rich Low_complexity Low_complexity 1 44 0 3 670 204 216 0 0 chr3L 11268787 11268838 -13274719 + (CATATA)n Simple_repeat Simple_repeat 1 51 0 3 670 27 0 0 0 chr3L 11268956 11268983 -13274574 + AT_rich Low_complexity Low_complexity 1 27 0 3 670 25 0 0 0 chr3L 11269609 11269634 -13273923 + AT_rich Low_complexity Low_complexity 1 25 0 3 670 8534 1 1 0 chr3L 11270614 11271550 -13272007 - DMRT1A LINE R1 -5 5178 4242 3 671 200 176 0 0 chr3L 11272735 11272769 -13270788 + (TATG)n Simple_repeat Simple_repeat 3 36 0 3 671 22 0 0 0 chr3L 11273290 11273312 -13270245 + AT_rich Low_complexity Low_complexity 1 22 0 3 671 218 167 0 0 chr3L 11273739 11273775 -13269782 + (CAGC)n Simple_repeat Simple_repeat 2 37 0 3 671 201 74 0 0 chr3L 11273835 11273862 -13269695 + (TTTCG)n Simple_repeat Simple_repeat 3 29 0 3 671 209 208 0 0 chr3L 11273926 11273974 -13269583 + T-rich Low_complexity Low_complexity 1 48 0 3 671 21 36 0 0 chr3L 11274422 11274450 -13269107 + AT_rich Low_complexity Low_complexity 1 28 0 3 671 38 22 0 0 chr3L 11274677 11274722 -13268835 + AT_rich Low_complexity Low_complexity 1 45 0 3 671 35 41 0 0 chr3L 11274765 11274814 -13268743 + AT_rich Low_complexity Low_complexity 1 49 0 3 671 213 39 0 0 chr3L 11274991 11275017 -13268540 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3 671 21 36 0 0 chr3L 11275352 11275380 -13268177 + AT_rich Low_complexity Low_complexity 1 28 0 3 671 243 88 0 0 chr3L 11277055 11277089 -13266468 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 671 332 324 7 7 chr3L 11277582 11277636 -13265921 + (CAA)n Simple_repeat Simple_repeat 1 149 0 3 671 243 295 0 0 chr3L 11277636 11277731 -13265826 + ROO_I LTR Pao 638 732 -7524 3 671 258 337 6 22 chr3L 11277970 11278152 -13265405 + (CAA)n Simple_repeat Simple_repeat 2 180 0 3 671 24 53 0 0 chr3L 11278408 11278446 -13265111 + AT_rich Low_complexity Low_complexity 1 38 0 3 671 414 151 0 0 chr3L 11279013 11279086 -13264471 + (CATA)n Simple_repeat Simple_repeat 4 76 0 3 671 25 31 0 0 chr3L 11280064 11280096 -13263461 + AT_rich Low_complexity Low_complexity 1 32 0 3 671 21 0 0 0 chr3L 11280145 11280166 -13263391 + AT_rich Low_complexity Low_complexity 1 21 0 3 671 180 0 0 0 chr3L 11281291 11281311 -13262246 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 3 671 233 128 0 21 chr3L 11281465 11281513 -13262044 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 671 205 302 0 34 chr3L 11282187 11282276 -13261281 + (CTG)n Simple_repeat Simple_repeat 3 88 0 3 671 277 217 0 0 chr3L 11282332 11282424 -13261133 - ROO_I LTR Pao -7524 732 641 3 671 216 67 0 0 chr3L 11282517 11282547 -13261010 + (CTG)n Simple_repeat Simple_repeat 1 30 0 3 671 26 0 0 0 chr3L 11282899 11282925 -13260632 + AT_rich Low_complexity Low_complexity 1 26 0 3 671 183 80 0 0 chr3L 11285388 11285413 -13258144 + (TATG)n Simple_repeat Simple_repeat 4 28 0 3 671 29 28 0 0 chr3L 11285834 11285870 -13257687 + AT_rich Low_complexity Low_complexity 1 36 0 3 671 240 210 16 31 chr3L 11288217 11288314 -13255243 + (TTG)n Simple_repeat Simple_repeat 1 95 0 3 671 216 360 0 11 chr3L 11288390 11288570 -13254987 + (TTG)n Simple_repeat Simple_repeat 2 179 0 3 671 306 176 9 73 chr3L 11288715 11288825 -13254732 - ROO_I LTR Pao -7513 743 641 3 671 201 176 0 0 chr3L 11288966 11289000 -13254557 + (TTG)n Simple_repeat Simple_repeat 1 34 0 3 671 217 135 0 26 chr3L 11289088 11289126 -13254431 + (CTG)n Simple_repeat Simple_repeat 1 37 0 3 671 21 57 0 0 chr3L 11289497 11289532 -13254025 + AT_rich Low_complexity Low_complexity 1 35 0 3 671 183 259 0 0 chr3L 11289741 11289799 -13253758 + (TTG)n Simple_repeat Simple_repeat 1 58 0 3 671 22 35 0 0 chr3L 11290968 11290997 -13252560 + AT_rich Low_complexity Low_complexity 1 29 0 3 671 211 133 0 62 chr3L 11292465 11292513 -13251044 + T-rich Low_complexity Low_complexity 2 46 0 3 671 237 98 0 0 chr3L 11294381 11294422 -13249135 + (ATG)n Simple_repeat Simple_repeat 3 43 0 3 671 27 29 0 0 chr3L 11295403 11295437 -13248120 + AT_rich Low_complexity Low_complexity 1 34 0 3 671 201 233 0 0 chr3L 11295910 11295953 -13247604 + G-rich Low_complexity Low_complexity 6 48 0 3 671 261 197 0 0 chr3L 11298874 11298940 -13244617 + A-rich Low_complexity Low_complexity 1 66 0 3 671 189 121 0 0 chr3L 11303770 11303803 -13239754 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 671 208 206 32 0 chr3L 11304042 11304105 -13239452 + (TA)n Simple_repeat Simple_repeat 2 66 0 3 671 257 269 0 0 chr3L 11304282 11304349 -13239208 + (TG)n Simple_repeat Simple_repeat 1 67 0 3 671 24 32 0 0 chr3L 11305175 11305206 -13238351 + AT_rich Low_complexity Low_complexity 1 31 0 3 671 25 31 0 0 chr3L 11307566 11307598 -13235959 + AT_rich Low_complexity Low_complexity 1 32 0 3 671 23 0 0 0 chr3L 11307643 11307666 -13235891 + AT_rich Low_complexity Low_complexity 1 23 0 3 671 27 29 0 0 chr3L 11308969 11309003 -13234554 + AT_rich Low_complexity Low_complexity 1 34 0 3 671 180 135 0 0 chr3L 11311080 11311117 -13232440 + (GGAAA)n Simple_repeat Simple_repeat 1 37 0 3 671 180 0 0 0 chr3L 11311679 11311699 -13231858 + (CAT)n Simple_repeat Simple_repeat 2 21 0 3 671 234 91 0 0 chr3L 11313186 11313219 -13230338 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 671 28 0 0 0 chr3L 11315741 11315769 -13227788 + AT_rich Low_complexity Low_complexity 1 28 0 3 671 24 32 0 0 chr3L 11317290 11317321 -13226236 + AT_rich Low_complexity Low_complexity 1 31 0 3 671 220 292 12 36 chr3L 11317687 11317854 -13225703 + (TTG)n Simple_repeat Simple_repeat 3 165 0 3 671 202 244 0 0 chr3L 11318007 11318052 -13225505 + T-rich Low_complexity Low_complexity 1 45 0 3 671 183 100 0 0 chr3L 11319200 11319230 -13224327 + (T)n Simple_repeat Simple_repeat 1 30 0 3 671 233 271 0 0 chr3L 11322540 11322588 -13220969 + (CCCCAA)n Simple_repeat Simple_repeat 6 53 0 3 671 213 65 0 0 chr3L 11322665 11322696 -13220861 + (A)n Simple_repeat Simple_repeat 1 31 0 3 671 27259 3 0 2 chr3L 11322849 11325979 -13217578 + LINEJ1_DM LINE Jockey 1898 5020 0 3 671 21 57 0 0 chr3L 11327974 11328009 -13215548 + AT_rich Low_complexity Low_complexity 1 35 0 3 671 22 0 0 0 chr3L 11328689 11328711 -13214846 + AT_rich Low_complexity Low_complexity 1 22 0 3 671 240 122 0 0 chr3L 11329150 11329191 -13214366 + (A)n Simple_repeat Simple_repeat 1 41 0 3 671 215 178 22 0 chr3L 11329215 11329260 -13214297 + A-rich Low_complexity Low_complexity 3 48 0 3 671 180 0 0 0 chr3L 11329471 11329491 -13214066 + (TGGA)n Simple_repeat Simple_repeat 4 23 0 3 671 27 0 0 0 chr3L 11329570 11329597 -13213960 + AT_rich Low_complexity Low_complexity 1 27 0 3 671 201 261 0 0 chr3L 11330845 11330891 -13212666 + GA-rich Low_complexity Low_complexity 3 48 0 3 671 204 97 0 0 chr3L 11331500 11331531 -13212026 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 671 312 48 0 0 chr3L 11332781 11332823 -13210734 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 671 21 0 0 0 chr3L 11333212 11333233 -13210324 + AT_rich Low_complexity Low_complexity 1 21 0 3 671 24 32 0 0 chr3L 11336409 11336440 -13207117 + AT_rich Low_complexity Low_complexity 1 31 0 3 671 235 280 0 26 chr3L 11336883 11336960 -13206597 + (TTCGGG)n Simple_repeat Simple_repeat 4 78 0 3 671 27 0 0 0 chr3L 11338578 11338605 -13204952 + AT_rich Low_complexity Low_complexity 1 27 0 3 671 187 143 0 58 chr3L 11340860 11340912 -13202645 + (TGAA)n Simple_repeat Simple_repeat 4 52 0 3 671 25 31 0 0 chr3L 11342392 11342424 -13201133 + AT_rich Low_complexity Low_complexity 1 32 0 3 671 25 31 0 0 chr3L 11342483 11342515 -13201042 + AT_rich Low_complexity Low_complexity 1 32 0 3 671 21 36 0 0 chr3L 11342567 11342595 -13200962 + AT_rich Low_complexity Low_complexity 1 28 0 3 671 213 94 0 0 chr3L 11342734 11342766 -13200791 + (CGAAA)n Simple_repeat Simple_repeat 5 36 0 3 671 189 74 0 0 chr3L 11342831 11342858 -13200699 + (CGATG)n Simple_repeat Simple_repeat 2 28 0 3 671 29 70 0 0 chr3L 11343857 11343914 -13199643 + AT_rich Low_complexity Low_complexity 1 57 0 3 671 223 225 38 0 chr3L 11346487 11346567 -13196990 + (CAA)n Simple_repeat Simple_repeat 1 83 0 3 671 207 278 0 0 chr3L 11347626 11347680 -13195877 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 3 671 182 91 0 29 chr3L 11348870 11348904 -13194653 + (CCGAA)n Simple_repeat Simple_repeat 3 35 0 3 671 207 0 0 0 chr3L 11350197 11350220 -13193337 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 671 23 33 0 0 chr3L 11352564 11352594 -13190963 + AT_rich Low_complexity Low_complexity 1 30 0 3 671 192 77 0 0 chr3L 11353272 11353298 -13190259 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 671 255 79 0 0 chr3L 11353414 11353452 -13190105 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 671 212 227 0 29 chr3L 11358854 11358922 -13184635 + (CAA)n Simple_repeat Simple_repeat 1 66 0 3 671 29 28 0 0 chr3L 11359415 11359451 -13184106 + AT_rich Low_complexity Low_complexity 1 36 0 3 671 211 184 0 0 chr3L 11359642 11359680 -13183877 + (CACG)n Simple_repeat Simple_repeat 4 41 0 3 671 250 267 0 13 chr3L 11361323 11361399 -13182158 + (CCCCAG)n Simple_repeat Simple_repeat 3 77 0 3 671 203 244 0 0 chr3L 11362911 11362952 -13180605 + (CAG)n Simple_repeat Simple_repeat 2 42 0 3 671 21 36 0 0 chr3L 11364734 11364762 -13178795 + AT_rich Low_complexity Low_complexity 1 28 0 3 671 22 35 0 0 chr3L 11365136 11365165 -13178392 + AT_rich Low_complexity Low_complexity 1 29 0 3 671 21 0 0 0 chr3L 11366135 11366156 -13177401 + AT_rich Low_complexity Low_complexity 1 21 0 3 671 222 118 0 0 chr3L 11366508 11366542 -13177015 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 671 243 129 31 31 chr3L 11367087 11367151 -13176406 + (TTTA)n Simple_repeat Simple_repeat 4 67 0 3 671 182 150 0 24 chr3L 11367529 11367570 -13175987 + (CATA)n Simple_repeat Simple_repeat 2 41 0 3 671 234 116 0 0 chr3L 11368196 11368239 -13175318 + (CGAAT)n Simple_repeat Simple_repeat 3 45 0 3 671 37 0 0 0 chr3L 11371458 11371495 -13172062 + AT_rich Low_complexity Low_complexity 1 37 0 3 671 21 71 0 0 chr3L 11373008 11373050 -13170507 + AT_rich Low_complexity Low_complexity 1 42 0 3 671 24 0 0 0 chr3L 11375426 11375450 -13168107 + AT_rich Low_complexity Low_complexity 1 24 0 3 671 228 86 0 0 chr3L 11377227 11377262 -13166295 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 3 671 204 40 0 0 chr3L 11377508 11377533 -13166024 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 671 24 0 0 0 chr3L 11378447 11378471 -13165086 + AT_rich Low_complexity Low_complexity 1 24 0 3 671 211 264 0 0 chr3L 11378929 11378982 -13164575 + (CGGA)n Simple_repeat Simple_repeat 3 55 0 3 671 194 136 0 22 chr3L 11379226 11379271 -13164286 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 671 288 0 0 0 chr3L 11380021 11380053 -13163504 + (CAG)n Simple_repeat Simple_repeat 3 34 0 3 671 246 32 0 0 chr3L 11380315 11380346 -13163211 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 671 180 0 0 0 chr3L 11382977 11382997 -13160560 + (G)n Simple_repeat Simple_repeat 1 20 0 3 671 269 298 19 19 chr3L 11383807 11383913 -13159644 + (CCCGAA)n Simple_repeat Simple_repeat 6 111 0 3 671 377 308 9 18 chr3L 11383947 11384056 -13159501 + G-rich Low_complexity Low_complexity 5 112 0 3 671 21 0 0 0 chr3L 11384845 11384866 -13158691 + AT_rich Low_complexity Low_complexity 1 21 0 3 671 30 69 0 0 chr3L 11386631 11386689 -13156868 + AT_rich Low_complexity Low_complexity 1 58 0 3 671 237 296 0 0 chr3L 11391019 11391090 -13152467 + (ACTG)n Simple_repeat Simple_repeat 2 72 0 3 671 297 75 0 0 chr3L 11394913 11394953 -13148604 + (CAATC)n Simple_repeat Simple_repeat 5 44 0 3 671 243 204 0 0 chr3L 11395271 11395325 -13148232 + (CGGA)n Simple_repeat Simple_repeat 4 57 0 3 671 227 116 0 44 chr3L 11396484 11396529 -13147028 + (TATATG)n Simple_repeat Simple_repeat 4 46 0 3 671 201 162 0 0 chr3L 11397142 11397179 -13146378 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 671 263 214 0 0 chr3L 11398584 11398668 -13144889 + ROO_I LTR Pao 649 732 -7524 3 671 23 0 0 0 chr3L 11400549 11400572 -13142985 + AT_rich Low_complexity Low_complexity 1 23 0 3 671 25 108 0 0 chr3L 11402988 11403090 -13140467 + AT_rich Low_complexity Low_complexity 1 102 0 3 671 31 0 0 0 chr3L 11403100 11403131 -13140426 + AT_rich Low_complexity Low_complexity 1 31 0 3 672 23 68 0 0 chr3L 11403701 11403745 -13139812 + AT_rich Low_complexity Low_complexity 1 44 0 3 672 29 0 0 0 chr3L 11404692 11404721 -13138836 + AT_rich Low_complexity Low_complexity 1 29 0 3 672 213 39 0 0 chr3L 11406162 11406188 -13137369 + (CGAAT)n Simple_repeat Simple_repeat 2 27 0 3 672 218 293 27 0 chr3L 11406643 11406718 -13136839 + (CAA)n Simple_repeat Simple_repeat 2 78 0 3 672 43 47 0 0 chr3L 11410792 11410856 -13132701 + AT_rich Low_complexity Low_complexity 1 64 0 3 672 277 230 34 11 chr3L 11411304 11411392 -13132165 + (CAGT)n Simple_repeat Simple_repeat 4 93 0 3 672 286 188 0 48 chr3L 11411785 11411869 -13131688 + (TA)n Simple_repeat Simple_repeat 1 80 0 3 672 180 152 0 0 chr3L 11419967 11420000 -13123557 + C-rich Low_complexity Low_complexity 3 35 0 3 672 49 43 0 0 chr3L 11420120 11420190 -13123367 + AT_rich Low_complexity Low_complexity 1 70 0 3 672 26 93 0 0 chr3L 11420895 11420970 -13122587 + AT_rich Low_complexity Low_complexity 1 75 0 3 672 23 33 0 0 chr3L 11421356 11421386 -13122171 + AT_rich Low_complexity Low_complexity 1 30 0 3 672 21 0 0 0 chr3L 11421467 11421488 -13122069 + AT_rich Low_complexity Low_complexity 1 21 0 3 672 27 0 0 0 chr3L 11421855 11421882 -13121675 + AT_rich Low_complexity Low_complexity 1 27 0 3 672 27 29 0 0 chr3L 11421914 11421948 -13121609 + AT_rich Low_complexity Low_complexity 1 34 0 3 672 21 0 0 0 chr3L 11422427 11422448 -13121109 + AT_rich Low_complexity Low_complexity 1 21 0 3 672 27 29 0 0 chr3L 11424817 11424851 -13118706 + AT_rich Low_complexity Low_complexity 1 34 0 3 672 225 191 0 0 chr3L 11425363 11425410 -13118147 + A-rich Low_complexity Low_complexity 1 47 0 3 672 22 0 0 0 chr3L 11425589 11425611 -13117946 + AT_rich Low_complexity Low_complexity 1 22 0 3 672 29 70 0 0 chr3L 11429274 11429331 -13114226 + AT_rich Low_complexity Low_complexity 1 57 0 3 672 225 94 0 0 chr3L 11432652 11432684 -13110873 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 672 24 77 0 0 chr3L 11432805 11432857 -13110700 + AT_rich Low_complexity Low_complexity 1 52 0 3 672 39 68 0 0 chr3L 11434285 11434359 -13109198 + AT_rich Low_complexity Low_complexity 1 74 0 3 672 27 96 0 0 chr3L 11434430 11434513 -13109044 + AT_rich Low_complexity Low_complexity 1 83 0 3 672 216 97 0 0 chr3L 11435549 11435580 -13107977 + (TA)n Simple_repeat Simple_repeat 1 31 0 3 672 208 143 0 0 chr3L 11435663 11435698 -13107859 + (A)n Simple_repeat Simple_repeat 1 35 0 3 672 38 39 0 0 chr3L 11436798 11436850 -13106707 + AT_rich Low_complexity Low_complexity 1 52 0 3 672 26 0 0 0 chr3L 11436866 11436892 -13106665 + AT_rich Low_complexity Low_complexity 1 26 0 3 672 40 37 0 0 chr3L 11437445 11437499 -13106058 + AT_rich Low_complexity Low_complexity 1 54 0 3 672 294 302 12 30 chr3L 11437664 11437828 -13105729 + (GCTTG)n Simple_repeat Simple_repeat 5 165 0 3 672 213 94 0 0 chr3L 11440887 11440919 -13102638 + (T)n Simple_repeat Simple_repeat 1 32 0 3 672 195 129 0 0 chr3L 11443256 11443287 -13100270 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 672 44 70 0 0 chr3L 11443734 11443820 -13099737 + AT_rich Low_complexity Low_complexity 1 86 0 3 672 27 0 0 0 chr3L 11444566 11444593 -13098964 + AT_rich Low_complexity Low_complexity 1 27 0 3 672 192 152 0 0 chr3L 11445640 11445673 -13097884 + (TTCGGG)n Simple_repeat Simple_repeat 6 38 0 3 672 212 208 0 70 chr3L 11447743 11447800 -13095757 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 672 31 58 0 0 chr3L 11448635 11448687 -13094870 + AT_rich Low_complexity Low_complexity 1 52 0 3 672 26 0 0 0 chr3L 11451621 11451647 -13091910 + AT_rich Low_complexity Low_complexity 1 26 0 3 672 21 36 0 0 chr3L 11453326 11453354 -13090203 + AT_rich Low_complexity Low_complexity 1 28 0 3 672 24 53 0 0 chr3L 11454034 11454072 -13089485 + AT_rich Low_complexity Low_complexity 1 38 0 3 672 25 31 0 0 chr3L 11457141 11457173 -13086384 + AT_rich Low_complexity Low_complexity 1 32 0 3 672 237 83 0 0 chr3L 11459983 11460019 -13083538 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 672 30 0 0 0 chr3L 11460295 11460325 -13083232 + AT_rich Low_complexity Low_complexity 1 30 0 3 672 37 23 0 0 chr3L 11460370 11460414 -13083143 + AT_rich Low_complexity Low_complexity 1 44 0 3 672 22 0 0 0 chr3L 11460681 11460703 -13082854 + AT_rich Low_complexity Low_complexity 1 22 0 3 672 29 0 0 0 chr3L 11461615 11461644 -13081913 + AT_rich Low_complexity Low_complexity 1 29 0 3 672 371 88 0 29 chr3L 11462424 11462494 -13081063 + (CAGT)n Simple_repeat Simple_repeat 4 71 0 3 672 32 0 0 0 chr3L 11467880 11467912 -13075645 + AT_rich Low_complexity Low_complexity 1 32 0 3 672 21 57 0 0 chr3L 11468575 11468610 -13074947 + AT_rich Low_complexity Low_complexity 1 35 0 3 672 50 34 0 33 chr3L 11468624 11468714 -13074843 + AT_rich Low_complexity Low_complexity 1 87 0 3 672 195 42 0 0 chr3L 11470027 11470051 -13073506 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 3 672 29 0 0 0 chr3L 11470603 11470632 -13072925 + AT_rich Low_complexity Low_complexity 1 29 0 3 672 25 0 0 0 chr3L 11472072 11472097 -13071460 + AT_rich Low_complexity Low_complexity 1 25 0 3 672 27 29 0 0 chr3L 11472207 11472241 -13071316 + AT_rich Low_complexity Low_complexity 1 34 0 3 672 180 125 0 0 chr3L 11472295 11472327 -13071230 + (CACAG)n Simple_repeat Simple_repeat 4 35 0 3 672 22 0 0 0 chr3L 11472608 11472630 -13070927 + AT_rich Low_complexity Low_complexity 1 22 0 3 672 22 80 0 0 chr3L 11473308 11473358 -13070199 + AT_rich Low_complexity Low_complexity 1 50 0 3 672 194 143 20 0 chr3L 11473850 11473899 -13069658 + (CAACC)n Simple_repeat Simple_repeat 3 52 0 3 672 23 0 0 0 chr3L 11475421 11475444 -13068113 + AT_rich Low_complexity Low_complexity 1 23 0 3 672 214 244 0 0 chr3L 11477215 11477256 -13066301 + (CCA)n Simple_repeat Simple_repeat 2 42 0 3 672 225 236 0 18 chr3L 11479871 11479927 -13063630 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 672 28 0 0 0 chr3L 11483243 11483271 -13060286 + AT_rich Low_complexity Low_complexity 1 28 0 3 672 258 56 0 0 chr3L 11484206 11484242 -13059315 + (CATA)n Simple_repeat Simple_repeat 1 36 0 3 672 186 189 0 0 chr3L 11484954 11484991 -13058566 + (CATA)n Simple_repeat Simple_repeat 2 38 0 3 672 225 308 0 0 chr3L 11485226 11485291 -13058266 + (CATA)n Simple_repeat Simple_repeat 3 67 0 3 672 204 200 0 43 chr3L 11485351 11485398 -13058159 + (CATA)n Simple_repeat Simple_repeat 3 47 0 3 672 222 204 0 0 chr3L 11486644 11486688 -13056869 + GA-rich Low_complexity Low_complexity 2 45 0 3 672 22 56 0 0 chr3L 11487101 11487137 -13056420 + AT_rich Low_complexity Low_complexity 1 36 0 3 672 200 79 0 50 chr3L 11488483 11488523 -13055034 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 3 672 24 32 0 0 chr3L 11489362 11489393 -13054164 + AT_rich Low_complexity Low_complexity 1 31 0 3 672 25 0 0 0 chr3L 11489923 11489948 -13053609 + AT_rich Low_complexity Low_complexity 1 25 0 3 672 21 71 0 0 chr3L 11490652 11490694 -13052863 + AT_rich Low_complexity Low_complexity 1 42 0 3 672 198 71 0 0 chr3L 11491488 11491516 -13052041 + (A)n Simple_repeat Simple_repeat 1 28 0 3 672 32 43 0 0 chr3L 11492164 11492210 -13051347 + AT_rich Low_complexity Low_complexity 1 46 0 3 672 3766 0 0 0 chr3L 11492211 11492639 -13050918 - ROO_LTR LTR Pao 0 428 1 3 672 62925 0 0 0 chr3L 11492639 11500000 -13043557 - ROO_I LTR Pao 0 8256 895 3 672 7835 1 12 1 chr3L 11500000 11500884 -13042673 - ROO_I LTR Pao -7362 894 1 3 672 4006 2 0 0 chr3L 11500884 11501312 -13042245 - ROO_LTR LTR Pao 0 428 1 3 672 2628 0 0 0 chr3L 11501723 11502008 -13041549 - DMRPR Unknown Unknown 0 285 1 3 672 22 80 0 0 chr3L 11502751 11502801 -13040756 + AT_rich Low_complexity Low_complexity 1 50 0 3 672 2217 61 0 0 chr3L 11503417 11503697 -13039860 + DMRPR Unknown Unknown 1 280 -5 3 672 27 0 0 0 chr3L 11504254 11504281 -13039276 + AT_rich Low_complexity Low_complexity 1 27 0 3 672 21 0 0 0 chr3L 11504719 11504740 -13038817 + AT_rich Low_complexity Low_complexity 1 21 0 3 672 425 81 65 0 chr3L 11504812 11504874 -13038683 - DNAREP1_DM LINE Penelope 0 594 529 3 672 473 80 74 30 chr3L 11504861 11504948 -13038609 - DNAREP1_DM LINE Penelope -105 489 436 3 672 415 167 132 23 chr3L 11504944 11505152 -13038405 - DNAREP1_DM LINE Penelope -301 293 1 3 672 193 177 0 71 chr3L 11505669 11505754 -13037803 + (CCA)n Simple_repeat Simple_repeat 3 81 0 3 672 265 111 0 145 chr3L 11505834 11506129 -13037428 + (CCA)n Simple_repeat Simple_repeat 1 252 0 3 672 204 40 0 0 chr3L 11507044 11507069 -13036488 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 672 204 125 0 0 chr3L 11509396 11509428 -13034129 + (TAA)n Simple_repeat Simple_repeat 1 32 0 3 672 29 0 0 0 chr3L 11509690 11509719 -13033838 + AT_rich Low_complexity Low_complexity 1 29 0 3 672 38 0 0 0 chr3L 11511963 11512001 -13031556 + AT_rich Low_complexity Low_complexity 1 38 0 3 672 189 74 0 0 chr3L 11514896 11514923 -13028634 + (TGG)n Simple_repeat Simple_repeat 1 27 0 3 672 198 0 0 0 chr3L 11516036 11516058 -13027499 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 3 672 21 36 0 0 chr3L 11517429 11517457 -13026100 + AT_rich Low_complexity Low_complexity 1 28 0 3 672 243 88 0 0 chr3L 11517525 11517559 -13025998 + (CTG)n Simple_repeat Simple_repeat 2 35 0 3 672 237 180 0 0 chr3L 11517706 11517756 -13025801 + (ATGGTG)n Simple_repeat Simple_repeat 5 54 0 3 672 241 127 18 0 chr3L 11518125 11518180 -13025377 - ROO_I LTR Pao -7536 720 665 3 672 264 154 0 0 chr3L 11520719 11520771 -13022786 + (TTG)n Simple_repeat Simple_repeat 1 52 0 3 672 21 0 0 0 chr3L 11524019 11524040 -13019517 + AT_rich Low_complexity Low_complexity 1 21 0 3 672 210 171 0 0 chr3L 11526158 11526199 -13017358 + (CATA)n Simple_repeat Simple_repeat 4 44 0 3 672 24 67 0 0 chr3L 11526612 11526657 -13016900 + AT_rich Low_complexity Low_complexity 1 45 0 3 672 23 0 0 0 chr3L 11527529 11527552 -13016005 + AT_rich Low_complexity Low_complexity 1 23 0 3 672 24 32 0 0 chr3L 11528176 11528207 -13015350 + AT_rich Low_complexity Low_complexity 1 31 0 3 672 303 212 0 0 chr3L 11531899 11531979 -13011578 + (CAGT)n Simple_repeat Simple_repeat 3 82 0 3 672 225 191 0 0 chr3L 11533967 11534014 -13009543 + A-rich Low_complexity Low_complexity 1 47 0 3 673 330 147 0 0 chr3L 11535004 11535072 -13008485 + (TTG)n Simple_repeat Simple_repeat 1 68 0 3 673 237 257 0 0 chr3L 11535253 11535327 -13008230 - ROO_I LTR Pao -7527 729 656 3 673 290 141 0 25 chr3L 11535631 11535711 -13007846 - ROO_I LTR Pao -7528 728 651 3 673 33 0 0 0 chr3L 11538753 11538786 -13004771 + AT_rich Low_complexity Low_complexity 1 33 0 3 673 221 314 0 0 chr3L 11540191 11540261 -13003296 + (TGAG)n Simple_repeat Simple_repeat 4 73 0 3 673 245 185 0 0 chr3L 11540536 11540590 -13002967 - ROO_I LTR Pao -7530 726 673 3 673 201 74 0 0 chr3L 11542733 11542760 -13000797 + (A)n Simple_repeat Simple_repeat 1 27 0 3 673 214 211 19 0 chr3L 11544199 11544251 -12999306 + (GTTTG)n Simple_repeat Simple_repeat 5 57 0 3 673 222 91 0 0 chr3L 11545673 11545706 -12997851 + (CTG)n Simple_repeat Simple_repeat 3 35 0 3 673 239 176 0 0 chr3L 11546396 11546447 -12997110 - ROO_I LTR Pao -7512 744 694 3 673 22 0 0 0 chr3L 11547666 11547688 -12995869 + AT_rich Low_complexity Low_complexity 1 22 0 3 673 261 212 80 34 chr3L 11549480 11549568 -12993989 - ROO_I LTR Pao -7519 737 646 3 673 225 163 0 0 chr3L 11550532 11550581 -12992976 + GA-rich Low_complexity Low_complexity 1 49 0 3 673 207 0 0 0 chr3L 11550617 11550640 -12992917 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 673 26 0 0 0 chr3L 11551140 11551166 -12992391 + AT_rich Low_complexity Low_complexity 1 26 0 3 673 24 0 0 0 chr3L 11552513 11552537 -12991020 + AT_rich Low_complexity Low_complexity 1 24 0 3 673 201 204 23 0 chr3L 11554267 11554311 -12989246 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 673 213 39 0 0 chr3L 11555147 11555173 -12988384 + (CACG)n Simple_repeat Simple_repeat 4 29 0 3 673 23 33 0 0 chr3L 11557397 11557427 -12986130 + AT_rich Low_complexity Low_complexity 1 30 0 3 673 21 57 0 0 chr3L 11557445 11557480 -12986077 + AT_rich Low_complexity Low_complexity 1 35 0 3 673 61845 1 1 15 chr3L 11557935 11565503 -12978054 + DM412 LTR Gypsy 1 6897 0 3 673 22 56 0 0 chr3L 11565875 11565911 -12977646 + AT_rich Low_complexity Low_complexity 1 36 0 3 673 22 56 0 0 chr3L 11568735 11568771 -12974786 + AT_rich Low_complexity Low_complexity 1 36 0 3 673 300 240 0 0 chr3L 11569234 11569334 -12974223 + (CAGA)n Simple_repeat Simple_repeat 4 103 0 3 673 26 0 0 0 chr3L 11569973 11569999 -12973558 + AT_rich Low_complexity Low_complexity 1 26 0 3 673 2084 70 0 0 chr3L 11570269 11570539 -12973018 + DMRPR Unknown Unknown 7 276 -9 3 673 25 0 0 0 chr3L 11571122 11571147 -12972410 + AT_rich Low_complexity Low_complexity 1 25 0 3 673 21 57 0 0 chr3L 11571301 11571336 -12972221 + AT_rich Low_complexity Low_complexity 1 35 0 3 673 2105 67 0 0 chr3L 11571387 11571657 -12971900 + DMRPR Unknown Unknown 7 276 -9 3 673 46 97 0 0 chr3L 11573363 11573507 -12970050 + AT_rich Low_complexity Low_complexity 1 144 0 3 673 24 53 0 0 chr3L 11574495 11574533 -12969024 + AT_rich Low_complexity Low_complexity 1 38 0 3 673 310 196 0 0 chr3L 11574540 11574596 -12968961 + DNAREP1_DM LINE Penelope 1 56 -538 3 673 2075 70 0 4 chr3L 11574950 11575222 -12968335 + DMRPR Unknown Unknown 7 277 -8 3 673 22 80 0 0 chr3L 11581585 11581635 -12961922 + AT_rich Low_complexity Low_complexity 1 50 0 3 673 283 252 10 10 chr3L 11582866 11582970 -12960587 + (CCA)n Simple_repeat Simple_repeat 3 106 0 3 673 39 22 0 0 chr3L 11583317 11583363 -12960194 + AT_rich Low_complexity Low_complexity 1 46 0 3 673 222 118 39 19 chr3L 11583396 11583448 -12960109 + (TAA)n Simple_repeat Simple_repeat 3 55 0 3 673 27 29 0 0 chr3L 11583612 11583646 -12959911 + AT_rich Low_complexity Low_complexity 1 34 0 3 673 28 61 0 0 chr3L 11583870 11583919 -12959638 + AT_rich Low_complexity Low_complexity 1 49 0 3 673 264 289 0 0 chr3L 11584146 11584250 -12959307 + (TGG)n Simple_repeat Simple_repeat 3 106 0 3 673 25 51 0 0 chr3L 11586376 11586415 -12957142 + AT_rich Low_complexity Low_complexity 1 39 0 3 673 29 28 0 0 chr3L 11586777 11586813 -12956744 + AT_rich Low_complexity Low_complexity 1 36 0 3 673 208 262 0 15 chr3L 11587513 11587579 -12955978 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 673 29 0 0 0 chr3L 11589099 11589128 -12954429 + AT_rich Low_complexity Low_complexity 1 29 0 3 673 207 100 0 0 chr3L 11590014 11590044 -12953513 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 673 202 189 0 0 chr3L 11590309 11590346 -12953211 + (CGAAT)n Simple_repeat Simple_repeat 5 41 0 3 673 25 65 0 0 chr3L 11590876 11590922 -12952635 + AT_rich Low_complexity Low_complexity 1 46 0 3 673 30 0 0 0 chr3L 11590965 11590995 -12952562 + AT_rich Low_complexity Low_complexity 1 30 0 3 673 200 231 0 0 chr3L 11592226 11592265 -12951292 + (ATG)n Simple_repeat Simple_repeat 1 39 0 3 673 31 58 0 0 chr3L 11592604 11592656 -12950901 + AT_rich Low_complexity Low_complexity 1 52 0 3 673 32 98 0 0 chr3L 11594008 11594110 -12949447 + AT_rich Low_complexity Low_complexity 1 102 0 3 673 225 131 0 47 chr3L 11595959 11596023 -12947534 + (CAG)n Simple_repeat Simple_repeat 3 63 0 3 673 213 121 0 0 chr3L 11596146 11596179 -12947378 + (CAG)n Simple_repeat Simple_repeat 1 33 0 3 673 237 83 0 0 chr3L 11596260 11596296 -12947261 + (CAG)n Simple_repeat Simple_repeat 1 36 0 3 673 183 156 0 0 chr3L 11596801 11596833 -12946724 + (CGA)n Simple_repeat Simple_repeat 3 34 0 3 673 350 143 0 0 chr3L 11597407 11597477 -12946080 + ROO_I LTR Pao 665 734 -7522 3 673 212 95 0 67 chr3L 11597511 11597556 -12946001 + (CAG)n Simple_repeat Simple_repeat 3 44 0 3 673 194 0 0 37 chr3L 11602905 11602932 -12940625 + (TTA)n Simple_repeat Simple_repeat 1 26 0 3 673 35 41 0 0 chr3L 11602972 11603021 -12940536 + AT_rich Low_complexity Low_complexity 1 49 0 3 673 22 0 0 0 chr3L 11616745 11616767 -12926790 + AT_rich Low_complexity Low_complexity 1 22 0 3 673 27 49 0 0 chr3L 11617650 11617691 -12925866 + AT_rich Low_complexity Low_complexity 1 41 0 3 673 23 0 0 0 chr3L 11617810 11617833 -12925724 + AT_rich Low_complexity Low_complexity 1 23 0 3 673 33 56 0 0 chr3L 11619402 11619456 -12924101 + AT_rich Low_complexity Low_complexity 1 54 0 3 673 23 33 0 0 chr3L 11624285 11624315 -12919242 + AT_rich Low_complexity Low_complexity 1 30 0 3 673 24 0 0 0 chr3L 11625294 11625318 -12918239 + AT_rich Low_complexity Low_complexity 1 24 0 3 673 245 293 16 39 chr3L 11627779 11627907 -12915650 + A-rich Low_complexity Low_complexity 1 125 0 3 673 189 0 0 0 chr3L 11630434 11630455 -12913102 + (CAT)n Simple_repeat Simple_repeat 2 22 0 3 673 21 0 0 0 chr3L 11632879 11632900 -12910657 + AT_rich Low_complexity Low_complexity 1 21 0 3 673 188 170 19 0 chr3L 11643694 11643747 -12899810 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 673 35 88 0 0 chr3L 11644473 11644564 -12898993 + AT_rich Low_complexity Low_complexity 1 91 0 3 673 24 53 0 0 chr3L 11645054 11645092 -12898465 + AT_rich Low_complexity Low_complexity 1 38 0 3 673 24 67 0 0 chr3L 11646680 11646725 -12896832 + AT_rich Low_complexity Low_complexity 1 45 0 3 673 30 0 0 0 chr3L 11650331 11650361 -12893196 + AT_rich Low_complexity Low_complexity 1 30 0 3 673 22 0 0 0 chr3L 11652498 11652520 -12891037 + AT_rich Low_complexity Low_complexity 1 22 0 3 673 21 36 0 0 chr3L 11656971 11656999 -12886558 + AT_rich Low_complexity Low_complexity 1 28 0 3 673 222 128 0 0 chr3L 11657464 11657503 -12886054 + (CAGT)n Simple_repeat Simple_repeat 3 41 0 3 673 33 66 0 0 chr3L 11657687 11657748 -12885809 + AT_rich Low_complexity Low_complexity 1 61 0 3 673 180 77 0 0 chr3L 11658888 11658914 -12884643 + (CAGA)n Simple_repeat Simple_repeat 4 29 0 3 673 21 0 0 0 chr3L 11659066 11659087 -12884470 + AT_rich Low_complexity Low_complexity 1 21 0 3 673 234 0 0 0 chr3L 11664082 11664108 -12879449 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 673 22 56 0 0 chr3L 11664272 11664308 -12879249 + AT_rich Low_complexity Low_complexity 1 36 0 3 673 25 0 0 0 chr3L 11664429 11664454 -12879103 + AT_rich Low_complexity Low_complexity 1 25 0 3 673 231 125 0 0 chr3L 11664998 11665038 -12878519 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 674 268 229 0 0 chr3L 11668084 11668154 -12875403 - ROO_I LTR Pao -7541 715 646 3 674 22 0 0 0 chr3L 11671206 11671228 -12872329 + AT_rich Low_complexity Low_complexity 1 22 0 3 674 48 43 0 0 chr3L 11672224 11672293 -12871264 + AT_rich Low_complexity Low_complexity 1 69 0 3 674 23 78 0 0 chr3L 11673826 11673877 -12869680 + AT_rich Low_complexity Low_complexity 1 51 0 3 674 198 236 0 0 chr3L 11677848 11677903 -12865654 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 3 674 24 32 0 0 chr3L 11682147 11682178 -12861379 + AT_rich Low_complexity Low_complexity 1 31 0 3 674 24 32 0 0 chr3L 11682734 11682765 -12860792 + AT_rich Low_complexity Low_complexity 1 31 0 3 674 192 40 0 0 chr3L 11682931 11682956 -12860601 + (TTA)n Simple_repeat Simple_repeat 3 27 0 3 674 37 52 0 0 chr3L 11686679 11686737 -12856820 + AT_rich Low_complexity Low_complexity 1 58 0 3 674 25 31 0 0 chr3L 11686910 11686942 -12856615 + AT_rich Low_complexity Low_complexity 1 32 0 3 674 24 32 0 0 chr3L 11688816 11688847 -12854710 + AT_rich Low_complexity Low_complexity 1 31 0 3 674 225 267 29 29 chr3L 11700966 11701070 -12842487 + A-rich Low_complexity Low_complexity 6 109 0 3 674 30 59 0 0 chr3L 11701823 11701874 -12841683 + AT_rich Low_complexity Low_complexity 1 51 0 3 674 22 35 0 0 chr3L 11705509 11705538 -12838019 + AT_rich Low_complexity Low_complexity 1 29 0 3 674 180 77 0 0 chr3L 11705587 11705613 -12837944 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 674 180 111 0 0 chr3L 11711336 11711363 -12832194 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 674 21 0 0 0 chr3L 11713540 11713561 -12829996 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 27 62 0 0 chr3L 11713683 11713731 -12829826 + AT_rich Low_complexity Low_complexity 1 48 0 3 674 43508 1 0 0 chr3L 11716255 11720972 -12822585 + DOC LINE Jockey 10 4724 -1 3 674 21 57 0 0 chr3L 11722331 11722366 -12821191 + AT_rich Low_complexity Low_complexity 1 35 0 3 674 21 36 0 0 chr3L 11726692 11726720 -12816837 + AT_rich Low_complexity Low_complexity 1 28 0 3 674 32 0 0 0 chr3L 11728308 11728340 -12815217 + AT_rich Low_complexity Low_complexity 1 32 0 3 674 25 31 0 0 chr3L 11733034 11733066 -12810491 + AT_rich Low_complexity Low_complexity 1 32 0 3 674 202 214 0 0 chr3L 11735043 11735085 -12808472 + CT-rich Low_complexity Low_complexity 4 45 0 3 674 21 0 0 0 chr3L 11735793 11735814 -12807743 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 29 0 0 0 chr3L 11737407 11737436 -12806121 + AT_rich Low_complexity Low_complexity 1 29 0 3 674 23 0 0 0 chr3L 11740969 11740992 -12802565 + AT_rich Low_complexity Low_complexity 1 23 0 3 674 27 62 0 0 chr3L 11746429 11746477 -12797080 + AT_rich Low_complexity Low_complexity 1 48 0 3 674 218 155 35 0 chr3L 11747111 11747169 -12796388 + T-rich Low_complexity Low_complexity 4 63 0 3 674 267 175 0 0 chr3L 11747388 11747445 -12796112 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 674 21 0 0 0 chr3L 11751494 11751515 -12792042 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 189 74 0 0 chr3L 11756013 11756040 -12787517 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 674 243 143 129 21 chr3L 11756389 11756482 -12787075 + (TCCG)n Simple_repeat Simple_repeat 1 103 0 3 674 183 184 0 0 chr3L 11756543 11756581 -12786976 + (CAA)n Simple_repeat Simple_repeat 1 38 0 3 674 23 68 0 0 chr3L 11756900 11756944 -12786613 + AT_rich Low_complexity Low_complexity 1 44 0 3 674 22 0 0 0 chr3L 11757385 11757407 -12786150 + AT_rich Low_complexity Low_complexity 1 22 0 3 674 23 0 0 0 chr3L 11757684 11757707 -12785850 + AT_rich Low_complexity Low_complexity 1 23 0 3 674 222 156 0 0 chr3L 11758022 11758067 -12785490 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 674 23 33 0 0 chr3L 11759469 11759499 -12784058 + AT_rich Low_complexity Low_complexity 1 30 0 3 674 21 0 0 0 chr3L 11766252 11766273 -12777284 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 215 213 0 0 chr3L 11770532 11770579 -12772978 + (CAG)n Simple_repeat Simple_repeat 3 49 0 3 674 21 0 0 0 chr3L 11779868 11779889 -12763668 + AT_rich Low_complexity Low_complexity 1 21 0 3 674 26 0 0 0 chr3L 11781820 11781846 -12761711 + AT_rich Low_complexity Low_complexity 1 26 0 3 674 37 62 0 0 chr3L 11786536 11786601 -12756956 + AT_rich Low_complexity Low_complexity 1 65 0 3 674 21 36 0 0 chr3L 11793595 11793623 -12749934 + AT_rich Low_complexity Low_complexity 1 28 0 3 674 29 47 0 0 chr3L 11793702 11793745 -12749812 + AT_rich Low_complexity Low_complexity 1 43 0 3 674 31 26 0 0 chr3L 11794521 11794559 -12748998 + AT_rich Low_complexity Low_complexity 1 38 0 3 674 33 73 0 0 chr3L 11794831 11794899 -12748658 + AT_rich Low_complexity Low_complexity 1 68 0 3 675 35 24 0 0 chr3L 11798928 11798970 -12744587 + AT_rich Low_complexity Low_complexity 1 42 0 3 675 24 0 0 0 chr3L 11801978 11802002 -12741555 + AT_rich Low_complexity Low_complexity 1 24 0 3 675 184 72 47 23 chr3L 11803686 11803729 -12739828 + (TTAA)n Simple_repeat Simple_repeat 4 47 0 3 675 25 0 0 0 chr3L 11803855 11803880 -12739677 + AT_rich Low_complexity Low_complexity 1 25 0 3 675 248 211 0 37 chr3L 11806876 11806930 -12736627 + DNAREP1_DM LINE Penelope 394 445 -149 3 675 472 149 11 11 chr3L 11808306 11808401 -12735156 + DNAREP1_DM LINE Penelope 55 149 -445 3 675 23 33 0 0 chr3L 11809569 11809599 -12733958 + AT_rich Low_complexity Low_complexity 1 30 0 3 675 23 54 0 0 chr3L 11815463 11815500 -12728057 + AT_rich Low_complexity Low_complexity 1 37 0 3 675 275 82 0 223 chr3L 11818928 11819022 -12724535 - DNAREP1_DM LINE Penelope -447 147 75 3 675 231 114 0 0 chr3L 11819030 11819065 -12724492 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 675 257 244 63 56 chr3L 11819332 11819475 -12724082 + P_DG DNA P 2742 2885 -3 3 675 901 110 175 28 chr3L 11819347 11819524 -12724033 - DNAREP1_DM LINE Penelope -2 592 390 3 675 29 0 0 0 chr3L 11823928 11823957 -12719600 + AT_rich Low_complexity Low_complexity 1 29 0 3 675 274 229 24 39 chr3L 11824103 11824230 -12719327 + T-rich Low_complexity Low_complexity 4 128 0 3 675 195 184 0 0 chr3L 11826268 11826306 -12717251 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 675 30 0 0 0 chr3L 11829979 11830009 -12713548 + AT_rich Low_complexity Low_complexity 1 30 0 3 675 29 0 0 0 chr3L 11830249 11830278 -12713279 + AT_rich Low_complexity Low_complexity 1 29 0 3 675 1388 69 5 31 chr3L 11830864 11831059 -12712498 - G5A_DM LINE Jockey -96 2745 2556 3 675 207 204 0 0 chr3L 11831114 11831158 -12712399 + A-rich Low_complexity Low_complexity 1 44 0 3 675 324 0 0 0 chr3L 11834195 11834231 -12709326 + (A)n Simple_repeat Simple_repeat 1 36 0 3 675 23 68 0 0 chr3L 11834888 11834932 -12708625 + AT_rich Low_complexity Low_complexity 1 44 0 3 675 180 0 0 0 chr3L 11837477 11837497 -12706060 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 675 211 119 47 23 chr3L 11840952 11840995 -12702562 + (TATG)n Simple_repeat Simple_repeat 3 46 0 3 675 375 197 126 17 chr3L 11841273 11841392 -12702165 + DNAREP1_DM LINE Penelope 33 164 -430 3 675 410 89 0 0 chr3L 11841382 11841438 -12702119 + DNAREP1_DM LINE Penelope 321 376 -218 3 675 257 51 26 0 chr3L 11841438 11841477 -12702080 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 675 22 35 0 0 chr3L 11842542 11842571 -12700986 + AT_rich Low_complexity Low_complexity 1 29 0 3 675 28 0 0 0 chr3L 11842846 11842874 -12700683 + AT_rich Low_complexity Low_complexity 1 28 0 3 675 29 78 0 0 chr3L 11845877 11845941 -12697616 + AT_rich Low_complexity Low_complexity 1 64 0 3 675 36 23 0 0 chr3L 11847184 11847227 -12696330 + AT_rich Low_complexity Low_complexity 1 43 0 3 675 28 0 0 0 chr3L 11848948 11848976 -12694581 + AT_rich Low_complexity Low_complexity 1 28 0 3 675 24 0 0 0 chr3L 11849264 11849288 -12694269 + AT_rich Low_complexity Low_complexity 1 24 0 3 675 22 35 0 0 chr3L 11852714 11852743 -12690814 + AT_rich Low_complexity Low_complexity 1 29 0 3 675 21 57 0 0 chr3L 11855223 11855258 -12688299 + AT_rich Low_complexity Low_complexity 1 35 0 3 675 23 54 0 0 chr3L 11856885 11856922 -12686635 + AT_rich Low_complexity Low_complexity 1 37 0 3 675 22 0 0 0 chr3L 11856982 11857004 -12686553 + AT_rich Low_complexity Low_complexity 1 22 0 3 675 4440 6 0 2 chr3L 11857706 11858207 -12685350 - POGO DNA Pogo 0 2121 1622 3 675 6931 1 0 1 chr3L 11858198 11858946 -12684611 - POGO DNA Pogo -1374 747 1 3 675 189 121 0 0 chr3L 11859291 11859324 -12684233 + (T)n Simple_repeat Simple_repeat 1 33 0 3 675 192 40 0 0 chr3L 11859819 11859844 -12683713 + (TGG)n Simple_repeat Simple_repeat 3 27 0 3 675 260 217 0 0 chr3L 11866223 11866283 -12677274 + A-rich Low_complexity Low_complexity 1 60 0 3 675 240 35 0 0 chr3L 11866398 11866427 -12677130 + (T)n Simple_repeat Simple_repeat 1 29 0 3 675 22 35 0 0 chr3L 11868901 11868930 -12674627 + AT_rich Low_complexity Low_complexity 1 29 0 3 675 21 36 0 0 chr3L 11870643 11870671 -12672886 + AT_rich Low_complexity Low_complexity 1 28 0 3 675 21 0 0 0 chr3L 11871449 11871470 -12672087 + AT_rich Low_complexity Low_complexity 1 21 0 3 675 21 36 0 0 chr3L 11872266 11872294 -12671263 + AT_rich Low_complexity Low_complexity 1 28 0 3 675 26 0 0 0 chr3L 11874313 11874339 -12669218 + AT_rich Low_complexity Low_complexity 1 26 0 3 675 24 0 0 0 chr3L 11879489 11879513 -12664044 + AT_rich Low_complexity Low_complexity 1 24 0 3 675 359 89 578 0 chr3L 11880852 11880935 -12662622 + DNAREP1_DM LINE Penelope 445 575 -19 3 675 25 0 0 0 chr3L 11880963 11880988 -12662569 + AT_rich Low_complexity Low_complexity 1 25 0 3 675 29 28 0 0 chr3L 11883969 11884005 -12659552 + AT_rich Low_complexity Low_complexity 1 36 0 3 675 663 141 193 0 chr3L 11886232 11886367 -12657190 - DNAREP1_DM LINE Penelope -6 588 428 3 675 392 154 26 0 chr3L 11886373 11886451 -12657106 - DNAREP1_DM LINE Penelope -404 190 111 3 675 308 216 0 63 chr3L 11886971 11887050 -12656507 - ROO_I LTR Pao -7513 743 670 3 675 32 0 0 0 chr3L 11891503 11891535 -12652022 + AT_rich Low_complexity Low_complexity 1 32 0 3 675 21 57 0 0 chr3L 11892067 11892102 -12651455 + AT_rich Low_complexity Low_complexity 1 35 0 3 675 24 0 0 0 chr3L 11892762 11892786 -12650771 + AT_rich Low_complexity Low_complexity 1 24 0 3 675 42 104 0 0 chr3L 11893496 11893650 -12649907 + AT_rich Low_complexity Low_complexity 1 154 0 3 675 282 29 0 0 chr3L 11893880 11893915 -12649642 + (CA)n Simple_repeat Simple_repeat 1 35 0 3 675 21 0 0 0 chr3L 11895124 11895145 -12648412 + AT_rich Low_complexity Low_complexity 1 21 0 3 675 29 70 0 0 chr3L 11896330 11896387 -12647170 + AT_rich Low_complexity Low_complexity 1 57 0 3 675 195 167 0 0 chr3L 11897654 11897696 -12645861 + (CAGAGA)n Simple_repeat Simple_repeat 1 42 0 3 675 22 56 0 0 chr3L 11902742 11902778 -12640779 + AT_rich Low_complexity Low_complexity 1 36 0 3 675 192 143 0 0 chr3L 11903222 11903264 -12640293 + (ATG)n Simple_repeat Simple_repeat 3 44 0 3 675 24 77 0 0 chr3L 11903964 11904016 -12639541 + AT_rich Low_complexity Low_complexity 1 52 0 3 675 23 0 0 0 chr3L 11905135 11905158 -12638399 + AT_rich Low_complexity Low_complexity 1 23 0 3 675 34 42 0 0 chr3L 11907392 11907440 -12636117 + AT_rich Low_complexity Low_complexity 1 48 0 3 675 22 35 0 0 chr3L 11911819 11911848 -12631709 + AT_rich Low_complexity Low_complexity 1 29 0 3 675 213 261 14 14 chr3L 11911936 11912006 -12631551 + A-rich Low_complexity Low_complexity 1 70 0 3 675 23 0 0 0 chr3L 11912374 11912397 -12631160 + AT_rich Low_complexity Low_complexity 1 23 0 3 675 31 0 0 0 chr3L 11912409 11912440 -12631117 + AT_rich Low_complexity Low_complexity 1 31 0 3 675 27 29 0 0 chr3L 11912877 11912911 -12630646 + AT_rich Low_complexity Low_complexity 1 34 0 3 675 25 0 0 0 chr3L 11913068 11913093 -12630464 + AT_rich Low_complexity Low_complexity 1 25 0 3 675 252 345 0 0 chr3L 11918320 11918407 -12625150 + (TTCGGG)n Simple_repeat Simple_repeat 1 87 0 3 675 38 39 0 0 chr3L 11922773 11922825 -12620732 + AT_rich Low_complexity Low_complexity 1 52 0 3 675 320 271 0 0 chr3L 11924504 11924574 -12618983 + (CCCCAG)n Simple_repeat Simple_repeat 2 71 0 3 675 202 222 0 0 chr3L 11925168 11925213 -12618344 + (TGG)n Simple_repeat Simple_repeat 2 46 0 3 675 21 0 0 0 chr3L 11925476 11925497 -12618060 + AT_rich Low_complexity Low_complexity 1 21 0 3 675 21 36 0 0 chr3L 11926590 11926618 -12616939 + AT_rich Low_complexity Low_complexity 1 28 0 3 676 28 48 0 0 chr3L 11932637 11932679 -12610878 + AT_rich Low_complexity Low_complexity 1 42 0 3 676 31 0 0 0 chr3L 11933179 11933210 -12610347 + AT_rich Low_complexity Low_complexity 1 31 0 3 676 21 0 0 0 chr3L 11933219 11933240 -12610317 + AT_rich Low_complexity Low_complexity 1 21 0 3 676 25 31 0 0 chr3L 11933345 11933377 -12610180 + AT_rich Low_complexity Low_complexity 1 32 0 3 676 29 84 0 0 chr3L 11934957 11935028 -12608529 + AT_rich Low_complexity Low_complexity 1 71 0 3 676 25 0 0 0 chr3L 11935845 11935870 -12607687 + AT_rich Low_complexity Low_complexity 1 25 0 3 676 22 35 0 0 chr3L 11940212 11940241 -12603316 + AT_rich Low_complexity Low_complexity 1 29 0 3 676 23 54 0 0 chr3L 11958775 11958812 -12584745 + AT_rich Low_complexity Low_complexity 1 37 0 3 676 22 0 0 0 chr3L 11960533 11960555 -12583002 + AT_rich Low_complexity Low_complexity 1 22 0 3 676 25 51 0 0 chr3L 11967409 11967448 -12576109 + AT_rich Low_complexity Low_complexity 1 39 0 3 676 23 0 0 0 chr3L 11968050 11968073 -12575484 + AT_rich Low_complexity Low_complexity 1 23 0 3 676 31 0 0 0 chr3L 11986344 11986375 -12557182 + AT_rich Low_complexity Low_complexity 1 31 0 3 676 259 96 19 19 chr3L 11995523 11995576 -12547981 + (CA)n Simple_repeat Simple_repeat 1 53 0 3 676 23 54 0 0 chr3L 11996944 11996981 -12546576 + AT_rich Low_complexity Low_complexity 1 37 0 3 676 21 0 0 0 chr3L 11997768 11997789 -12545768 + AT_rich Low_complexity Low_complexity 1 21 0 3 676 35 24 0 0 chr3L 12008023 12008065 -12535492 + AT_rich Low_complexity Low_complexity 1 42 0 3 676 198 150 0 0 chr3L 12008349 12008389 -12535168 + (CAATC)n Simple_repeat Simple_repeat 2 41 0 3 676 28 29 0 0 chr3L 12009514 12009549 -12534008 + AT_rich Low_complexity Low_complexity 1 35 0 3 676 201 39 0 0 chr3L 12009710 12009736 -12533821 + (T)n Simple_repeat Simple_repeat 1 26 0 3 676 23 0 0 0 chr3L 12012451 12012474 -12531083 + AT_rich Low_complexity Low_complexity 1 23 0 3 676 25 0 0 0 chr3L 12015628 12015653 -12527904 + AT_rich Low_complexity Low_complexity 1 25 0 3 676 31 0 0 0 chr3L 12016619 12016650 -12526907 + AT_rich Low_complexity Low_complexity 1 31 0 3 676 255 31 0 0 chr3L 12017289 12017321 -12526236 + (CAAAT)n Simple_repeat Simple_repeat 2 33 0 3 676 25 65 0 0 chr3L 12020608 12020654 -12522903 + AT_rich Low_complexity Low_complexity 1 46 0 3 676 26 0 0 0 chr3L 12023003 12023029 -12520528 + AT_rich Low_complexity Low_complexity 1 26 0 3 676 21 0 0 0 chr3L 12024365 12024386 -12519171 + AT_rich Low_complexity Low_complexity 1 21 0 3 676 183 42 0 0 chr3L 12026840 12026864 -12516693 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 676 21 0 0 0 chr3L 12026893 12026914 -12516643 + AT_rich Low_complexity Low_complexity 1 21 0 3 676 27 81 0 0 chr3L 12030397 12030459 -12513098 + AT_rich Low_complexity Low_complexity 1 62 0 3 676 24 0 0 0 chr3L 12030739 12030763 -12512794 + AT_rich Low_complexity Low_complexity 1 24 0 3 676 23 0 0 0 chr3L 12032216 12032239 -12511318 + AT_rich Low_complexity Low_complexity 1 23 0 3 676 243 0 0 0 chr3L 12033300 12033327 -12510230 + (CAGTT)n Simple_repeat Simple_repeat 4 30 0 3 676 21 36 0 0 chr3L 12036164 12036192 -12507365 + AT_rich Low_complexity Low_complexity 1 28 0 3 676 213 39 0 0 chr3L 12040560 12040586 -12502971 + (TTG)n Simple_repeat Simple_repeat 1 26 0 3 676 21 0 0 0 chr3L 12043969 12043990 -12499567 + AT_rich Low_complexity Low_complexity 1 21 0 3 676 216 270 0 13 chr3L 12048564 12048639 -12494918 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 3 676 26 0 0 0 chr3L 12048833 12048859 -12494698 + AT_rich Low_complexity Low_complexity 1 26 0 3 676 27 29 0 0 chr3L 12051173 12051207 -12492350 + AT_rich Low_complexity Low_complexity 1 34 0 3 676 207 0 0 0 chr3L 12052215 12052238 -12491319 + (CAT)n Simple_repeat Simple_repeat 1 23 0 3 676 28 29 0 0 chr3L 12055012 12055047 -12488510 + AT_rich Low_complexity Low_complexity 1 35 0 3 676 21 36 0 0 chr3L 12057169 12057197 -12486360 + AT_rich Low_complexity Low_complexity 1 28 0 3 676 27 108 0 0 chr3L 12058319 12058430 -12485127 + AT_rich Low_complexity Low_complexity 1 111 0 3 677 289 138 16 78 chr3L 12060503 12060597 -12482960 - DNAREP1_DM LINE Penelope -118 476 428 3 677 36 23 0 0 chr3L 12061461 12061504 -12482053 + AT_rich Low_complexity Low_complexity 1 43 0 3 677 24 32 0 0 chr3L 12064620 12064651 -12478906 + AT_rich Low_complexity Low_complexity 1 31 0 3 677 21 0 0 0 chr3L 12067439 12067460 -12476097 + AT_rich Low_complexity Low_complexity 1 21 0 3 677 202 233 0 52 chr3L 12068328 12068405 -12475152 + T-rich Low_complexity Low_complexity 3 75 0 3 677 29 0 0 0 chr3L 12068794 12068823 -12474734 + AT_rich Low_complexity Low_complexity 1 29 0 3 677 22 0 0 0 chr3L 12074211 12074233 -12469324 + AT_rich Low_complexity Low_complexity 1 22 0 3 677 188 34 0 33 chr3L 12075418 12075448 -12468109 + (TAAAAA)n Simple_repeat Simple_repeat 1 29 0 3 677 21 0 0 0 chr3L 12077286 12077307 -12466250 + AT_rich Low_complexity Low_complexity 1 21 0 3 677 36 87 0 0 chr3L 12078602 12078694 -12464863 + AT_rich Low_complexity Low_complexity 1 92 0 3 677 22 0 0 0 chr3L 12080146 12080168 -12463389 + AT_rich Low_complexity Low_complexity 1 22 0 3 677 22 56 0 0 chr3L 12081700 12081736 -12461821 + AT_rich Low_complexity Low_complexity 1 36 0 3 677 21 0 0 0 chr3L 12083022 12083043 -12460514 + AT_rich Low_complexity Low_complexity 1 21 0 3 677 233 172 0 15 chr3L 12083435 12083500 -12460057 + (TTG)n Simple_repeat Simple_repeat 1 64 0 3 677 183 129 0 0 chr3L 12084234 12084265 -12459292 + (CATA)n Simple_repeat Simple_repeat 1 31 0 3 677 34 24 0 0 chr3L 12085417 12085458 -12458099 + AT_rich Low_complexity Low_complexity 1 41 0 3 677 28 48 0 0 chr3L 12087692 12087734 -12455823 + AT_rich Low_complexity Low_complexity 1 42 0 3 677 24 53 0 0 chr3L 12088193 12088231 -12455326 + AT_rich Low_complexity Low_complexity 1 38 0 3 677 21 0 0 0 chr3L 12089389 12089410 -12454147 + AT_rich Low_complexity Low_complexity 1 21 0 3 677 195 184 0 0 chr3L 12089792 12089830 -12453727 + (TATG)n Simple_repeat Simple_repeat 3 40 0 3 677 35 54 0 0 chr3L 12089981 12090037 -12453520 + AT_rich Low_complexity Low_complexity 1 56 0 3 677 24 91 0 0 chr3L 12090064 12090130 -12453427 + AT_rich Low_complexity Low_complexity 1 66 0 3 677 27 0 0 0 chr3L 12094538 12094565 -12448992 + AT_rich Low_complexity Low_complexity 1 27 0 3 677 242 214 11 0 chr3L 12095026 12095115 -12448442 + (CAATC)n Simple_repeat Simple_repeat 4 93 0 3 677 35 54 0 0 chr3L 12095248 12095304 -12448253 + AT_rich Low_complexity Low_complexity 1 56 0 3 677 21 0 0 0 chr3L 12095983 12096004 -12447553 + AT_rich Low_complexity Low_complexity 1 21 0 3 677 216 45 65 22 chr3L 12096153 12096199 -12447358 + (TAAAA)n Simple_repeat Simple_repeat 5 52 0 3 677 195 100 0 0 chr3L 12096359 12096389 -12447168 + (CAA)n Simple_repeat Simple_repeat 2 31 0 3 677 26 0 0 0 chr3L 12097353 12097379 -12446178 + AT_rich Low_complexity Low_complexity 1 26 0 3 677 22 80 0 0 chr3L 12098576 12098626 -12444931 + AT_rich Low_complexity Low_complexity 1 50 0 3 677 21 0 0 0 chr3L 12099401 12099422 -12444135 + AT_rich Low_complexity Low_complexity 1 21 0 3 677 201 158 0 0 chr3L 12100155 12100193 -12443364 + A-rich Low_complexity Low_complexity 1 38 0 3 677 22 80 0 0 chr3L 12101606 12101656 -12441901 + AT_rich Low_complexity Low_complexity 1 50 0 3 677 26 0 0 0 chr3L 12102596 12102622 -12440935 + AT_rich Low_complexity Low_complexity 1 26 0 3 677 37 0 0 0 chr3L 12102803 12102840 -12440717 + AT_rich Low_complexity Low_complexity 1 37 0 3 677 24 0 0 0 chr3L 12102933 12102957 -12440600 + AT_rich Low_complexity Low_complexity 1 24 0 3 677 261 151 0 0 chr3L 12104538 12104591 -12438966 + (TTG)n Simple_repeat Simple_repeat 1 53 0 3 677 261 194 15 0 chr3L 12104859 12104926 -12438631 + (TTTA)n Simple_repeat Simple_repeat 2 69 0 3 677 225 210 0 0 chr3L 12107796 12107858 -12435699 + (GAATG)n Simple_repeat Simple_repeat 4 65 0 3 677 249 83 0 0 chr3L 12110699 12110735 -12432822 + (GGA)n Simple_repeat Simple_repeat 1 36 0 3 677 22 35 0 0 chr3L 12111051 12111080 -12432477 + AT_rich Low_complexity Low_complexity 1 29 0 3 677 25 0 0 0 chr3L 12112899 12112924 -12430633 + AT_rich Low_complexity Low_complexity 1 25 0 3 677 40 21 0 0 chr3L 12114251 12114298 -12429259 + AT_rich Low_complexity Low_complexity 1 47 0 3 677 23 0 0 0 chr3L 12115882 12115905 -12427652 + AT_rich Low_complexity Low_complexity 1 23 0 3 677 186 43 0 0 chr3L 12117432 12117455 -12426102 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 677 192 111 0 0 chr3L 12117911 12117947 -12425610 + (CTG)n Simple_repeat Simple_repeat 1 36 0 3 677 216 122 0 0 chr3L 12118044 12118085 -12425472 + (CTG)n Simple_repeat Simple_repeat 1 41 0 3 677 21 36 0 0 chr3L 12118557 12118585 -12424972 + AT_rich Low_complexity Low_complexity 1 28 0 3 677 22 0 0 0 chr3L 12120972 12120994 -12422563 + AT_rich Low_complexity Low_complexity 1 22 0 3 677 36 40 0 0 chr3L 12125105 12125155 -12418402 + AT_rich Low_complexity Low_complexity 1 50 0 3 677 24 32 0 0 chr3L 12129873 12129904 -12413653 + AT_rich Low_complexity Low_complexity 1 31 0 3 677 22 35 0 0 chr3L 12131664 12131693 -12411864 + AT_rich Low_complexity Low_complexity 1 29 0 3 677 32 26 0 0 chr3L 12136491 12136530 -12407027 + AT_rich Low_complexity Low_complexity 1 39 0 3 677 22 80 0 0 chr3L 12142218 12142268 -12401289 + AT_rich Low_complexity Low_complexity 1 50 0 3 677 22 0 0 0 chr3L 12150008 12150030 -12393527 + AT_rich Low_complexity Low_complexity 1 22 0 3 677 21 57 0 0 chr3L 12150171 12150206 -12393351 + AT_rich Low_complexity Low_complexity 1 35 0 3 677 26 0 0 0 chr3L 12151580 12151606 -12391951 + AT_rich Low_complexity Low_complexity 1 26 0 3 677 35 24 0 0 chr3L 12152815 12152857 -12390700 + AT_rich Low_complexity Low_complexity 1 42 0 3 677 225 214 0 0 chr3L 12158340 12158382 -12385175 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 677 22 0 0 0 chr3L 12158530 12158552 -12385005 + AT_rich Low_complexity Low_complexity 1 22 0 3 677 33 43 0 0 chr3L 12160827 12160874 -12382683 + AT_rich Low_complexity Low_complexity 1 47 0 3 677 219 226 0 0 chr3L 12161657 12161710 -12381847 + (TGG)n Simple_repeat Simple_repeat 1 53 0 3 677 21 71 0 0 chr3L 12164098 12164140 -12379417 + AT_rich Low_complexity Low_complexity 1 42 0 3 677 26 0 0 0 chr3L 12167630 12167656 -12375901 + AT_rich Low_complexity Low_complexity 1 26 0 3 677 29 0 0 0 chr3L 12169247 12169276 -12374281 + AT_rich Low_complexity Low_complexity 1 29 0 3 677 198 103 0 0 chr3L 12171842 12171871 -12371686 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 677 180 77 0 0 chr3L 12172749 12172775 -12370782 + (GTTTG)n Simple_repeat Simple_repeat 2 27 0 3 677 24 0 0 0 chr3L 12172872 12172896 -12370661 + AT_rich Low_complexity Low_complexity 1 24 0 3 677 21 0 0 0 chr3L 12173823 12173844 -12369713 + AT_rich Low_complexity Low_complexity 1 21 0 3 677 237 33 0 0 chr3L 12176047 12176077 -12367480 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 677 225 275 0 0 chr3L 12176193 12176273 -12367284 + (CCCGAA)n Simple_repeat Simple_repeat 2 81 0 3 677 264 232 14 14 chr3L 12177161 12177231 -12366326 + DNAREP1_DM LINE Penelope 1 70 -524 3 677 538 182 19 144 chr3L 12177273 12177433 -12366124 + DNAREP1_DM LINE Penelope 455 594 0 3 677 34 0 0 0 chr3L 12178499 12178533 -12365024 + AT_rich Low_complexity Low_complexity 1 34 0 3 677 23 33 0 0 chr3L 12179592 12179622 -12363935 + AT_rich Low_complexity Low_complexity 1 30 0 3 677 420 220 0 0 chr3L 12180629 12180754 -12362803 + DMRT1A LINE R1 1990 2223 -2960 3 677 1110 196 137 110 chr3L 12180889 12181343 -12362214 + Gypsy12A_LTR LTR Gypsy 1812 2277 -3 3 677 23 0 0 0 chr3L 12183680 12183703 -12359854 + AT_rich Low_complexity Low_complexity 1 23 0 3 677 180 0 0 0 chr3L 12188004 12188024 -12355533 + (A)n Simple_repeat Simple_repeat 1 20 0 3 678 214 29 57 0 chr3L 12202592 12202627 -12340930 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 678 312 148 0 0 chr3L 12203499 12203560 -12339997 + (TTGG)n Simple_repeat Simple_repeat 3 63 0 3 678 23 0 0 0 chr3L 12206063 12206086 -12337471 + AT_rich Low_complexity Low_complexity 1 23 0 3 678 225 0 0 0 chr3L 12208216 12208241 -12335316 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 678 209 196 0 0 chr3L 12209295 12209341 -12334216 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 678 25 0 0 0 chr3L 12210933 12210958 -12332599 + AT_rich Low_complexity Low_complexity 1 25 0 3 678 189 0 0 0 chr3L 12212451 12212472 -12331085 + (CAG)n Simple_repeat Simple_repeat 2 22 0 3 678 276 130 0 0 chr3L 12217131 12217177 -12326380 + (CAAA)n Simple_repeat Simple_repeat 1 46 0 3 678 237 83 0 0 chr3L 12217961 12217997 -12325560 + (TG)n Simple_repeat Simple_repeat 2 37 0 3 678 38 22 0 0 chr3L 12218280 12218325 -12325232 + AT_rich Low_complexity Low_complexity 1 45 0 3 678 21 0 0 0 chr3L 12218456 12218477 -12325080 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 186 143 0 0 chr3L 12218759 12218794 -12324763 + (TTTTTA)n Simple_repeat Simple_repeat 2 36 0 3 678 198 0 0 0 chr3L 12220147 12220169 -12323388 + (TG)n Simple_repeat Simple_repeat 1 22 0 3 678 206 116 23 0 chr3L 12221696 12221739 -12321818 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 678 28 0 0 0 chr3L 12221971 12221999 -12321558 + AT_rich Low_complexity Low_complexity 1 28 0 3 678 246 136 0 0 chr3L 12223650 12223694 -12319863 + (CAGA)n Simple_repeat Simple_repeat 3 46 0 3 678 210 128 0 0 chr3L 12225235 12225274 -12318283 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 678 189 0 0 0 chr3L 12225869 12225890 -12317667 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 678 195 100 0 0 chr3L 12226503 12226533 -12317024 + (AACTG)n Simple_repeat Simple_repeat 4 33 0 3 678 182 118 0 29 chr3L 12227835 12227870 -12315687 + (CAGC)n Simple_repeat Simple_repeat 4 37 0 3 678 24 0 0 0 chr3L 12228587 12228611 -12314946 + AT_rich Low_complexity Low_complexity 1 24 0 3 678 21 0 0 0 chr3L 12229336 12229357 -12314200 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 611 182 155 7 chr3L 12229771 12229926 -12313631 - DNAREP1_DM LINE Penelope -15 579 402 3 678 212 238 0 0 chr3L 12232167 12232230 -12311327 + GA-rich Low_complexity Low_complexity 2 64 0 3 678 25 31 0 0 chr3L 12232293 12232325 -12311232 + AT_rich Low_complexity Low_complexity 1 32 0 3 678 180 125 0 0 chr3L 12232503 12232535 -12311022 + (TTG)n Simple_repeat Simple_repeat 3 34 0 3 678 207 108 0 26 chr3L 12235271 12235309 -12308248 + (TA)n Simple_repeat Simple_repeat 2 38 0 3 678 249 83 0 0 chr3L 12236044 12236080 -12307477 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 678 219 220 0 0 chr3L 12239382 12239432 -12304125 + (CAG)n Simple_repeat Simple_repeat 2 51 0 3 678 282 29 0 0 chr3L 12239620 12239655 -12303902 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 678 25 31 0 0 chr3L 12240559 12240591 -12302966 + AT_rich Low_complexity Low_complexity 1 32 0 3 678 242 220 0 0 chr3L 12240967 12241026 -12302531 + A-rich Low_complexity Low_complexity 4 62 0 3 678 24 0 0 0 chr3L 12241379 12241403 -12302154 + AT_rich Low_complexity Low_complexity 1 24 0 3 678 24 0 0 0 chr3L 12241664 12241688 -12301869 + AT_rich Low_complexity Low_complexity 1 24 0 3 678 25 0 0 0 chr3L 12241977 12242002 -12301555 + AT_rich Low_complexity Low_complexity 1 25 0 3 678 33 43 0 0 chr3L 12243765 12243812 -12299745 + AT_rich Low_complexity Low_complexity 1 47 0 3 678 198 118 0 0 chr3L 12244123 12244157 -12299400 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 678 22 0 0 0 chr3L 12244764 12244786 -12298771 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 215 79 26 0 chr3L 12245528 12245566 -12297991 + (CATTC)n Simple_repeat Simple_repeat 3 41 0 3 678 26 0 0 0 chr3L 12245850 12245876 -12297681 + AT_rich Low_complexity Low_complexity 1 26 0 3 678 296 182 45 11 chr3L 12245895 12245984 -12297573 + (TTTA)n Simple_repeat Simple_repeat 4 95 0 3 678 186 118 0 0 chr3L 12246325 12246359 -12297198 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 678 189 0 0 0 chr3L 12246591 12246612 -12296945 + (TAA)n Simple_repeat Simple_repeat 3 23 0 3 678 232 204 0 36 chr3L 12249469 12249525 -12294032 + (CGAAG)n Simple_repeat Simple_repeat 3 56 0 3 678 32 0 0 0 chr3L 12250182 12250214 -12293343 + AT_rich Low_complexity Low_complexity 1 32 0 3 678 27 0 0 0 chr3L 12251054 12251081 -12292476 + AT_rich Low_complexity Low_complexity 1 27 0 3 678 201 132 0 0 chr3L 12253954 12253992 -12289565 + (TCCA)n Simple_repeat Simple_repeat 3 40 0 3 678 204 125 0 0 chr3L 12254258 12254290 -12289267 + (CAT)n Simple_repeat Simple_repeat 2 33 0 3 678 22 56 0 0 chr3L 12255444 12255480 -12288077 + AT_rich Low_complexity Low_complexity 1 36 0 3 678 195 114 0 0 chr3L 12256567 12256602 -12286955 + (GATTG)n Simple_repeat Simple_repeat 3 37 0 3 678 204 111 0 0 chr3L 12258452 12258488 -12285069 + (A)n Simple_repeat Simple_repeat 1 36 0 3 678 212 77 26 0 chr3L 12260296 12260335 -12283222 + (TAAA)n Simple_repeat Simple_repeat 1 40 0 3 678 52 30 0 0 chr3L 12264517 12264583 -12278974 + AT_rich Low_complexity Low_complexity 1 66 0 3 678 21 0 0 0 chr3L 12267556 12267577 -12275980 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 29 0 0 0 chr3L 12268980 12269009 -12274548 + AT_rich Low_complexity Low_complexity 1 29 0 3 678 30 62 0 36 chr3L 12270423 12270507 -12273050 + AT_rich Low_complexity Low_complexity 1 81 0 3 678 399 70 0 40 chr3L 12274609 12274684 -12268873 + (TTA)n Simple_repeat Simple_repeat 2 73 0 3 678 22 0 0 0 chr3L 12281712 12281734 -12261823 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 246 128 0 0 chr3L 12282824 12282863 -12260694 + (TGG)n Simple_repeat Simple_repeat 1 39 0 3 678 27 0 0 0 chr3L 12283490 12283517 -12260040 + AT_rich Low_complexity Low_complexity 1 27 0 3 678 312 120 0 0 chr3L 12285779 12285829 -12257728 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 678 180 0 0 0 chr3L 12289595 12289615 -12253942 + (TTG)n Simple_repeat Simple_repeat 2 21 0 3 678 21 36 0 0 chr3L 12290605 12290633 -12252924 + AT_rich Low_complexity Low_complexity 1 28 0 3 678 27 62 0 0 chr3L 12290664 12290712 -12252845 + AT_rich Low_complexity Low_complexity 1 48 0 3 678 210 128 0 0 chr3L 12291018 12291057 -12252500 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 3 678 40 37 0 0 chr3L 12292670 12292724 -12250833 + AT_rich Low_complexity Low_complexity 1 54 0 3 678 180 0 0 0 chr3L 12293858 12293878 -12249679 + (CTTAA)n Simple_repeat Simple_repeat 1 20 0 3 678 243 0 0 0 chr3L 12294667 12294694 -12248863 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 678 31 26 0 0 chr3L 12295170 12295208 -12248349 + AT_rich Low_complexity Low_complexity 1 38 0 3 678 207 182 0 0 chr3L 12295763 12295807 -12247750 + (TTGG)n Simple_repeat Simple_repeat 4 47 0 3 678 25 31 0 0 chr3L 12297945 12297977 -12245580 + AT_rich Low_complexity Low_complexity 1 32 0 3 678 21 0 0 0 chr3L 12300455 12300476 -12243081 + AT_rich Low_complexity Low_complexity 1 21 0 3 678 238 196 20 0 chr3L 12301649 12301700 -12241857 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 678 212 175 0 0 chr3L 12302937 12302977 -12240580 + T-rich Low_complexity Low_complexity 1 40 0 3 678 233 157 39 0 chr3L 12303733 12303784 -12239773 + (TGGG)n Simple_repeat Simple_repeat 1 53 0 3 678 206 288 17 0 chr3L 12305135 12305194 -12238363 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 678 232 258 0 15 chr3L 12305292 12305359 -12238198 + (CA)n Simple_repeat Simple_repeat 1 66 0 3 678 198 91 0 0 chr3L 12305546 12305579 -12237978 + (TGAG)n Simple_repeat Simple_repeat 4 36 0 3 678 26 30 0 0 chr3L 12305913 12305946 -12237611 + AT_rich Low_complexity Low_complexity 1 33 0 3 678 23 0 0 0 chr3L 12311235 12311258 -12232299 + AT_rich Low_complexity Low_complexity 1 23 0 3 678 201 295 0 0 chr3L 12311692 12311753 -12231804 + (CA)n Simple_repeat Simple_repeat 2 62 0 3 678 195 42 0 0 chr3L 12311910 12311934 -12231623 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 678 25 0 0 0 chr3L 12313553 12313578 -12229979 + AT_rich Low_complexity Low_complexity 1 25 0 3 678 22 0 0 0 chr3L 12316312 12316334 -12227223 + AT_rich Low_complexity Low_complexity 1 22 0 3 678 25 90 0 0 chr3L 12316604 12316671 -12226886 + AT_rich Low_complexity Low_complexity 1 67 0 3 678 204 267 0 0 chr3L 12319178 12319223 -12224334 + (CCCGAA)n Simple_repeat Simple_repeat 4 48 0 3 678 225 0 0 0 chr3L 12320281 12320306 -12223251 + (CTG)n Simple_repeat Simple_repeat 2 26 0 3 679 223 122 0 39 chr3L 12321763 12321814 -12221743 + (CAG)n Simple_repeat Simple_repeat 1 49 0 3 679 278 177 0 0 chr3L 12322795 12322874 -12220683 + ROO_I LTR Pao 639 717 -7539 3 679 262 247 0 0 chr3L 12322937 12323022 -12220535 + ROO_I LTR Pao 665 749 -7507 3 679 189 147 0 0 chr3L 12323037 12323071 -12220486 + (CTG)n Simple_repeat Simple_repeat 1 34 0 3 679 183 100 0 0 chr3L 12323141 12323171 -12220386 + (CTG)n Simple_repeat Simple_repeat 3 32 0 3 679 22 35 0 0 chr3L 12323846 12323875 -12219682 + AT_rich Low_complexity Low_complexity 1 29 0 3 679 207 0 0 0 chr3L 12324376 12324399 -12219158 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 679 21 0 0 0 chr3L 12327201 12327222 -12216335 + AT_rich Low_complexity Low_complexity 1 21 0 3 679 45 34 0 0 chr3L 12329163 12329222 -12214335 + AT_rich Low_complexity Low_complexity 1 59 0 3 679 24 0 0 0 chr3L 12329241 12329265 -12214292 + AT_rich Low_complexity Low_complexity 1 24 0 3 679 201 129 0 0 chr3L 12333092 12333123 -12210434 + (CTG)n Simple_repeat Simple_repeat 1 31 0 3 679 189 171 0 0 chr3L 12333135 12333170 -12210387 + (CCG)n Simple_repeat Simple_repeat 2 36 0 3 679 26 0 0 0 chr3L 12337119 12337145 -12206412 + AT_rich Low_complexity Low_complexity 1 26 0 3 679 189 74 0 0 chr3L 12337947 12337974 -12205583 + (TTGG)n Simple_repeat Simple_repeat 1 27 0 3 679 180 77 0 0 chr3L 12343785 12343811 -12199746 + (TATG)n Simple_repeat Simple_repeat 2 27 0 3 679 219 69 0 0 chr3L 12355071 12355100 -12188457 + (CAT)n Simple_repeat Simple_repeat 1 29 0 3 679 192 77 0 0 chr3L 12358791 12358817 -12184740 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 679 21 0 0 0 chr3L 12362813 12362834 -12180723 + AT_rich Low_complexity Low_complexity 1 21 0 3 679 29 90 0 0 chr3L 12364325 12364403 -12179154 + AT_rich Low_complexity Low_complexity 1 78 0 3 679 32 0 0 0 chr3L 12369440 12369472 -12174085 + AT_rich Low_complexity Low_complexity 1 32 0 3 679 21 57 0 0 chr3L 12372090 12372125 -12171432 + AT_rich Low_complexity Low_complexity 1 35 0 3 679 27 0 0 0 chr3L 12381578 12381605 -12161952 + AT_rich Low_complexity Low_complexity 1 27 0 3 679 28 91 0 0 chr3L 12382509 12382586 -12160971 + AT_rich Low_complexity Low_complexity 1 77 0 3 679 22 0 0 0 chr3L 12385075 12385097 -12158460 + AT_rich Low_complexity Low_complexity 1 22 0 3 679 27 0 0 0 chr3L 12390101 12390128 -12153429 + AT_rich Low_complexity Low_complexity 1 27 0 3 679 24 0 0 0 chr3L 12395310 12395334 -12148223 + AT_rich Low_complexity Low_complexity 1 24 0 3 679 23 0 0 0 chr3L 12402700 12402723 -12140834 + AT_rich Low_complexity Low_complexity 1 23 0 3 679 30 69 0 0 chr3L 12408042 12408100 -12135457 + AT_rich Low_complexity Low_complexity 1 58 0 3 679 22 35 0 0 chr3L 12410950 12410979 -12132578 + AT_rich Low_complexity Low_complexity 1 29 0 3 679 249 146 0 0 chr3L 12414956 12415004 -12128553 + (TGGA)n Simple_repeat Simple_repeat 4 51 0 3 679 214 171 0 0 chr3L 12415760 12415801 -12127756 + CT-rich Low_complexity Low_complexity 1 41 0 3 679 362 293 12 18 chr3L 12416029 12416196 -12127361 + (CTG)n Simple_repeat Simple_repeat 1 166 0 3 679 237 377 0 0 chr3L 12416913 12417019 -12126538 + (CTG)n Simple_repeat Simple_repeat 3 108 0 3 679 22 70 0 0 chr3L 12420091 12420134 -12123423 + AT_rich Low_complexity Low_complexity 1 43 0 3 679 23 54 0 0 chr3L 12422290 12422327 -12121230 + AT_rich Low_complexity Low_complexity 1 37 0 3 679 22 0 0 0 chr3L 12423921 12423943 -12119614 + AT_rich Low_complexity Low_complexity 1 22 0 3 679 190 81 26 26 chr3L 12424168 12424206 -12119351 + (CTG)n Simple_repeat Simple_repeat 1 38 0 3 679 29 28 0 0 chr3L 12424617 12424653 -12118904 + AT_rich Low_complexity Low_complexity 1 36 0 3 679 239 93 0 23 chr3L 12424768 12424812 -12118745 + (TATAA)n Simple_repeat Simple_repeat 4 46 0 3 679 25 31 0 0 chr3L 12424919 12424951 -12118606 + AT_rich Low_complexity Low_complexity 1 32 0 3 679 347 152 0 12 chr3L 12425634 12425714 -12117843 + (CTG)n Simple_repeat Simple_repeat 2 80 0 3 679 183 146 0 0 chr3L 12425937 12425978 -12117579 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 679 21 71 0 0 chr3L 12428075 12428117 -12115440 + AT_rich Low_complexity Low_complexity 1 42 0 3 679 26 30 0 0 chr3L 12428411 12428444 -12115113 + AT_rich Low_complexity Low_complexity 1 33 0 3 679 212 254 36 0 chr3L 12428706 12428761 -12114796 + (TCCG)n Simple_repeat Simple_repeat 1 57 0 3 679 232 246 0 0 chr3L 12430346 12430407 -12113150 + ROO_I LTR Pao 639 699 -7557 3 679 234 91 0 0 chr3L 12431934 12431967 -12111590 + (ATGGTG)n Simple_repeat Simple_repeat 4 36 0 3 679 195 167 0 0 chr3L 12431998 12432040 -12111517 + (CTA)n Simple_repeat Simple_repeat 2 43 0 3 679 213 39 0 0 chr3L 12438625 12438651 -12104906 + (CGG)n Simple_repeat Simple_repeat 3 28 0 3 679 186 118 0 0 chr3L 12439778 12439812 -12103745 + (TCTCC)n Simple_repeat Simple_repeat 3 36 0 3 679 216 97 0 0 chr3L 12440431 12440462 -12103095 + (TCCA)n Simple_repeat Simple_repeat 1 31 0 3 679 21 0 0 0 chr3L 12441999 12442020 -12101537 + AT_rich Low_complexity Low_complexity 1 21 0 3 679 42 20 0 0 chr3L 12443192 12443241 -12100316 + AT_rich Low_complexity Low_complexity 1 49 0 3 679 25 31 0 0 chr3L 12443686 12443718 -12099839 + AT_rich Low_complexity Low_complexity 1 32 0 3 679 221 271 0 17 chr3L 12444065 12444125 -12099432 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 3 679 237 65 0 0 chr3L 12444307 12444338 -12099219 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 679 22 0 0 0 chr3L 12445719 12445741 -12097816 + AT_rich Low_complexity Low_complexity 1 22 0 3 679 183 42 0 0 chr3L 12445953 12445977 -12097580 + (ATTCG)n Simple_repeat Simple_repeat 2 25 0 3 679 192 77 0 0 chr3L 12449396 12449422 -12094135 + (TTAAG)n Simple_repeat Simple_repeat 3 28 0 3 679 180 0 0 0 chr3L 12449810 12449830 -12093727 + (ATG)n Simple_repeat Simple_repeat 1 20 0 3 679 198 150 0 0 chr3L 12450005 12450045 -12093512 + (GGA)n Simple_repeat Simple_repeat 1 40 0 3 679 185 65 32 0 chr3L 12450230 12450261 -12093296 + (CCGAA)n Simple_repeat Simple_repeat 3 34 0 3 679 32 95 0 0 chr3L 12451660 12451755 -12091802 + AT_rich Low_complexity Low_complexity 1 95 0 3 680 216 0 0 0 chr3L 12452212 12452236 -12091321 + (TTCGG)n Simple_repeat Simple_repeat 4 27 0 3 680 200 111 28 0 chr3L 12454530 12454566 -12088991 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 680 186 118 0 0 chr3L 12455129 12455163 -12088394 + (CATAC)n Simple_repeat Simple_repeat 5 38 0 3 680 234 0 0 0 chr3L 12455325 12455351 -12088206 + (T)n Simple_repeat Simple_repeat 1 26 0 3 680 238 211 0 0 chr3L 12456043 12456095 -12087462 + T-rich Low_complexity Low_complexity 1 52 0 3 680 393 141 0 0 chr3L 12456783 12456854 -12086703 + (CTG)n Simple_repeat Simple_repeat 1 71 0 3 680 330 169 0 0 chr3L 12459203 12459268 -12084289 + (CTG)n Simple_repeat Simple_repeat 3 67 0 3 680 200 170 19 19 chr3L 12460740 12460794 -12082763 + T-rich Low_complexity Low_complexity 4 57 0 3 680 195 167 0 0 chr3L 12460917 12460959 -12082598 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 680 212 291 0 37 chr3L 12461372 12461479 -12082078 + GA-rich Low_complexity Low_complexity 2 104 0 3 680 35 41 0 0 chr3L 12461846 12461895 -12081662 + AT_rich Low_complexity Low_complexity 1 49 0 3 680 22 0 0 0 chr3L 12461973 12461995 -12081562 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 237 163 0 0 chr3L 12462755 12462804 -12080753 + (GGATG)n Simple_repeat Simple_repeat 5 53 0 3 680 22 0 0 0 chr3L 12463287 12463309 -12080248 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 220 176 0 0 chr3L 12463655 12463689 -12079868 + (CCCCAA)n Simple_repeat Simple_repeat 3 36 0 3 680 29 0 0 0 chr3L 12467662 12467691 -12075866 + AT_rich Low_complexity Low_complexity 1 29 0 3 680 22 35 0 0 chr3L 12472622 12472651 -12070906 + AT_rich Low_complexity Low_complexity 1 29 0 3 680 22 0 0 0 chr3L 12473858 12473880 -12069677 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 216 179 0 0 chr3L 12476409 12476448 -12067109 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 680 222 161 0 67 chr3L 12478077 12478137 -12065420 + (TTCCG)n Simple_repeat Simple_repeat 2 57 0 3 680 21 0 0 0 chr3L 12478406 12478427 -12065130 + AT_rich Low_complexity Low_complexity 1 21 0 3 680 21 0 0 0 chr3L 12479770 12479791 -12063766 + AT_rich Low_complexity Low_complexity 1 21 0 3 680 25 51 0 0 chr3L 12481474 12481513 -12062044 + AT_rich Low_complexity Low_complexity 1 39 0 3 680 22 56 0 0 chr3L 12482066 12482102 -12061455 + AT_rich Low_complexity Low_complexity 1 36 0 3 680 28 29 0 0 chr3L 12482234 12482269 -12061288 + AT_rich Low_complexity Low_complexity 1 35 0 3 680 21 57 0 0 chr3L 12482441 12482476 -12061081 + AT_rich Low_complexity Low_complexity 1 35 0 3 680 235 217 0 0 chr3L 12487388 12487434 -12056123 + (CATA)n Simple_repeat Simple_repeat 4 49 0 3 680 31 58 0 0 chr3L 12489635 12489687 -12053870 + AT_rich Low_complexity Low_complexity 1 52 0 3 680 22 0 0 0 chr3L 12494456 12494478 -12049079 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 39 22 0 0 chr3L 12497059 12497105 -12046452 + AT_rich Low_complexity Low_complexity 1 46 0 3 680 22 0 0 0 chr3L 12497141 12497163 -12046394 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 22 0 0 0 chr3L 12501110 12501132 -12042425 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 24 0 0 0 chr3L 12501162 12501186 -12042371 + AT_rich Low_complexity Low_complexity 1 24 0 3 680 21 0 0 0 chr3L 12505063 12505084 -12038473 + AT_rich Low_complexity Low_complexity 1 21 0 3 680 318 293 24 18 chr3L 12510598 12510765 -12032792 + (CAG)n Simple_repeat Simple_repeat 1 168 0 3 680 189 175 0 0 chr3L 12510821 12510861 -12032696 + (CAA)n Simple_repeat Simple_repeat 3 42 0 3 680 283 269 13 13 chr3L 12510872 12510951 -12032606 + (CGG)n Simple_repeat Simple_repeat 3 81 0 3 680 234 0 0 0 chr3L 12512618 12512644 -12030913 + (CCGAA)n Simple_repeat Simple_repeat 3 28 0 3 680 24 32 0 0 chr3L 12514366 12514397 -12029160 + AT_rich Low_complexity Low_complexity 1 31 0 3 680 26 0 0 0 chr3L 12517400 12517426 -12026131 + AT_rich Low_complexity Low_complexity 1 26 0 3 680 195 42 0 0 chr3L 12519290 12519314 -12024243 + (TTC)n Simple_repeat Simple_repeat 2 25 0 3 680 186 43 0 0 chr3L 12519442 12519465 -12024092 + (TTC)n Simple_repeat Simple_repeat 1 23 0 3 680 23 33 0 0 chr3L 12531705 12531735 -12011822 + AT_rich Low_complexity Low_complexity 1 30 0 3 680 22 0 0 0 chr3L 12531950 12531972 -12011585 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 198 0 0 0 chr3L 12532162 12532184 -12011373 + (TAGA)n Simple_repeat Simple_repeat 4 25 0 3 680 29 28 0 0 chr3L 12533396 12533432 -12010125 + AT_rich Low_complexity Low_complexity 1 36 0 3 680 21 36 0 0 chr3L 12534649 12534677 -12008880 + AT_rich Low_complexity Low_complexity 1 28 0 3 680 240 35 0 0 chr3L 12535221 12535250 -12008307 + (GCTG)n Simple_repeat Simple_repeat 4 32 0 3 680 182 105 0 26 chr3L 12539243 12539282 -12004275 + (TAAAAA)n Simple_repeat Simple_repeat 2 39 0 3 680 209 200 0 0 chr3L 12540669 12540719 -12002838 + T-rich Low_complexity Low_complexity 1 50 0 3 680 29 0 0 0 chr3L 12541096 12541125 -12002432 + AT_rich Low_complexity Low_complexity 1 29 0 3 680 249 211 0 14 chr3L 12545811 12545883 -11997674 + CT-rich Low_complexity Low_complexity 3 73 0 3 680 246 105 0 0 chr3L 12547054 12547092 -11996465 + (CAGT)n Simple_repeat Simple_repeat 2 39 0 3 680 24 53 0 0 chr3L 12547614 12547652 -11995905 + AT_rich Low_complexity Low_complexity 1 38 0 3 680 21 0 0 0 chr3L 12548213 12548234 -11995323 + AT_rich Low_complexity Low_complexity 1 21 0 3 680 22 0 0 0 chr3L 12549004 12549026 -11994531 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 24 32 0 0 chr3L 12550054 12550085 -11993472 + AT_rich Low_complexity Low_complexity 1 31 0 3 680 221 229 0 0 chr3L 12551686 12551743 -11991814 + T-rich Low_complexity Low_complexity 1 57 0 3 680 197 119 24 0 chr3L 12551954 12551996 -11991561 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 3 680 288 186 0 0 chr3L 12554936 12554995 -11988562 + (TCCG)n Simple_repeat Simple_repeat 3 61 0 3 680 21 0 0 0 chr3L 12555408 12555429 -11988128 + AT_rich Low_complexity Low_complexity 1 21 0 3 680 222 208 0 0 chr3L 12557430 12557478 -11986079 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 3 680 22 0 0 0 chr3L 12557612 12557634 -11985923 + AT_rich Low_complexity Low_complexity 1 22 0 3 680 180 77 0 0 chr3L 12559164 12559190 -11984367 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 680 210 175 25 0 chr3L 12559625 12559665 -11983892 + (CATTC)n Simple_repeat Simple_repeat 4 44 0 3 680 32 57 0 0 chr3L 12565921 12565974 -11977583 + AT_rich Low_complexity Low_complexity 1 53 0 3 680 207 186 0 23 chr3L 12567904 12567948 -11975609 + (GGATG)n Simple_repeat Simple_repeat 1 43 0 3 680 22 56 0 0 chr3L 12569347 12569383 -11974174 + AT_rich Low_complexity Low_complexity 1 36 0 3 680 28 0 0 0 chr3L 12570372 12570400 -11973157 + AT_rich Low_complexity Low_complexity 1 28 0 3 680 201 176 0 0 chr3L 12570589 12570623 -11972934 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 680 22 56 0 0 chr3L 12571319 12571355 -11972202 + AT_rich Low_complexity Low_complexity 1 36 0 3 680 21 0 0 0 chr3L 12572721 12572742 -11970815 + AT_rich Low_complexity Low_complexity 1 21 0 3 680 194 150 25 0 chr3L 12573706 12573746 -11969811 + (CAG)n Simple_repeat Simple_repeat 1 41 0 3 680 24 0 0 0 chr3L 12573898 12573922 -11969635 + AT_rich Low_complexity Low_complexity 1 24 0 3 680 264 30 0 0 chr3L 12574124 12574157 -11969400 + (GA)n Simple_repeat Simple_repeat 1 33 0 3 680 228 143 0 0 chr3L 12575269 12575311 -11968246 + (A)n Simple_repeat Simple_repeat 1 42 0 3 680 24 32 0 0 chr3L 12577984 12578015 -11965542 + AT_rich Low_complexity Low_complexity 1 31 0 3 680 23 0 0 0 chr3L 12578678 12578701 -11964856 + AT_rich Low_complexity Low_complexity 1 23 0 3 680 34 0 0 0 chr3L 12579536 12579570 -11963987 + AT_rich Low_complexity Low_complexity 1 34 0 3 680 231 152 0 0 chr3L 12579780 12579826 -11963731 + (CAA)n Simple_repeat Simple_repeat 3 48 0 3 680 34 0 0 0 chr3L 12580531 12580565 -11962992 + AT_rich Low_complexity Low_complexity 1 34 0 3 680 28 0 0 0 chr3L 12580680 12580708 -11962849 + AT_rich Low_complexity Low_complexity 1 28 0 3 680 216 211 0 0 chr3L 12581648 12581719 -11961838 + T-rich Low_complexity Low_complexity 1 71 0 3 680 192 77 0 0 chr3L 12581967 12581993 -11961564 + (TATATG)n Simple_repeat Simple_repeat 6 31 0 3 680 195 42 0 0 chr3L 12582026 12582050 -11961507 + (CGG)n Simple_repeat Simple_repeat 1 24 0 3 680 243 61 0 0 chr3L 12582753 12582786 -11960771 + (TTTAA)n Simple_repeat Simple_repeat 4 36 0 3 681 204 194 0 0 chr3L 12583058 12583094 -11960463 + C-rich Low_complexity Low_complexity 1 36 0 3 681 21 0 0 0 chr3L 12583304 12583325 -11960232 + AT_rich Low_complexity Low_complexity 1 21 0 3 681 221 353 0 0 chr3L 12583603 12583688 -11959869 + (CATA)n Simple_repeat Simple_repeat 4 88 0 3 681 339 44 0 0 chr3L 12584763 12584808 -11958749 + (ACTG)n Simple_repeat Simple_repeat 3 47 0 3 681 186 133 0 0 chr3L 12585598 12585628 -11957929 + (TA)n Simple_repeat Simple_repeat 1 30 0 3 681 321 82 0 0 chr3L 12588079 12588128 -11955429 + (CAG)n Simple_repeat Simple_repeat 3 51 0 3 681 300 70 0 0 chr3L 12588286 12588329 -11955228 + (CAG)n Simple_repeat Simple_repeat 3 45 0 3 681 189 74 0 0 chr3L 12588400 12588427 -11955130 + (CAG)n Simple_repeat Simple_repeat 3 29 0 3 681 21 0 0 0 chr3L 12589702 12589723 -11953834 + AT_rich Low_complexity Low_complexity 1 21 0 3 681 228 175 0 0 chr3L 12589948 12590011 -11953546 + (CAAAC)n Simple_repeat Simple_repeat 2 64 0 3 681 198 0 0 0 chr3L 12590333 12590355 -11953202 + (CATA)n Simple_repeat Simple_repeat 3 24 0 3 681 342 147 0 0 chr3L 12590643 12590711 -11952846 + (CATAC)n Simple_repeat Simple_repeat 2 69 0 3 681 48 32 0 0 chr3L 12591538 12591600 -11951957 + AT_rich Low_complexity Low_complexity 1 62 0 3 681 231 125 0 0 chr3L 12592570 12592610 -11950947 + (GCTG)n Simple_repeat Simple_repeat 4 43 0 3 681 21 57 0 0 chr3L 12593870 12593905 -11949652 + AT_rich Low_complexity Low_complexity 1 35 0 3 681 31 26 0 0 chr3L 12596149 12596187 -11947370 + AT_rich Low_complexity Low_complexity 1 38 0 3 681 189 94 0 0 chr3L 12600080 12600112 -11943445 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 681 22 88 0 0 chr3L 12600744 12600801 -11942756 + AT_rich Low_complexity Low_complexity 1 57 0 3 681 25 0 0 0 chr3L 12602169 12602194 -11941363 + AT_rich Low_complexity Low_complexity 1 25 0 3 681 22 70 0 0 chr3L 12604429 12604472 -11939085 + AT_rich Low_complexity Low_complexity 1 43 0 3 681 312 70 0 0 chr3L 12604767 12604810 -11938747 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 681 213 196 0 0 chr3L 12605125 12605171 -11938386 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 681 377 133 13 0 chr3L 12606873 12606948 -11936609 + (CATAC)n Simple_repeat Simple_repeat 5 80 0 3 681 181 73 0 113 chr3L 12608159 12608221 -11935336 + (CAACC)n Simple_repeat Simple_repeat 2 56 0 3 681 30 27 0 0 chr3L 12610862 12610899 -11932658 + AT_rich Low_complexity Low_complexity 1 37 0 3 681 255 103 0 0 chr3L 12611895 12611934 -11931623 + (GCTG)n Simple_repeat Simple_repeat 1 39 0 3 681 279 130 0 0 chr3L 12612921 12612975 -11930582 + (CAG)n Simple_repeat Simple_repeat 3 56 0 3 681 288 120 0 0 chr3L 12613219 12613269 -11930288 + (CAG)n Simple_repeat Simple_repeat 1 50 0 3 681 237 108 0 0 chr3L 12613542 12613579 -11929978 + (CAG)n Simple_repeat Simple_repeat 1 37 0 3 681 339 92 46 0 chr3L 12614106 12614171 -11929386 + (TGG)n Simple_repeat Simple_repeat 2 69 0 3 681 24 32 0 0 chr3L 12616761 12616792 -11926765 + AT_rich Low_complexity Low_complexity 1 31 0 3 681 214 264 0 0 chr3L 12617184 12617237 -11926320 + (CTG)n Simple_repeat Simple_repeat 2 54 0 3 681 25 31 0 0 chr3L 12617909 12617941 -11925616 + AT_rich Low_complexity Low_complexity 1 32 0 3 681 22 0 0 0 chr3L 12618312 12618334 -11925223 + AT_rich Low_complexity Low_complexity 1 22 0 3 681 22 35 0 0 chr3L 12620382 12620411 -11923146 + AT_rich Low_complexity Low_complexity 1 29 0 3 681 219 88 0 0 chr3L 12620946 12620980 -11922577 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 681 297 89 0 0 chr3L 12625963 12626008 -11917549 + (CGA)n Simple_repeat Simple_repeat 3 47 0 3 681 24 0 0 0 chr3L 12626171 12626195 -11917362 + AT_rich Low_complexity Low_complexity 1 24 0 3 681 21 71 0 0 chr3L 12626264 12626306 -11917251 + AT_rich Low_complexity Low_complexity 1 42 0 3 681 243 133 0 0 chr3L 12626687 12626732 -11916825 + (CA)n Simple_repeat Simple_repeat 1 45 0 3 681 21 0 0 0 chr3L 12628298 12628319 -11915238 + GC_rich Low_complexity Low_complexity 1 21 0 3 681 23 0 0 0 chr3L 12629399 12629422 -11914135 + AT_rich Low_complexity Low_complexity 1 23 0 3 681 189 0 0 0 chr3L 12629442 12629463 -11914094 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 681 240 111 0 0 chr3L 12631056 12631092 -11912465 + (ATGGTG)n Simple_repeat Simple_repeat 3 38 0 3 681 267 146 0 0 chr3L 12631578 12631633 -11911924 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 681 219 36 0 0 chr3L 12631718 12631746 -11911811 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 3 681 206 278 0 0 chr3L 12631789 12631843 -11911714 + (TGGG)n Simple_repeat Simple_repeat 2 55 0 3 681 21 0 0 0 chr3L 12632023 12632044 -11911513 + AT_rich Low_complexity Low_complexity 1 21 0 3 681 26 74 0 0 chr3L 12632159 12632213 -11911344 + AT_rich Low_complexity Low_complexity 1 54 0 3 681 303 161 0 0 chr3L 12634500 12634556 -11909001 + (TGAA)n Simple_repeat Simple_repeat 4 59 0 3 681 26 30 0 0 chr3L 12637752 12637785 -11905772 + AT_rich Low_complexity Low_complexity 1 33 0 3 681 31 44 0 0 chr3L 12639077 12639122 -11904435 + AT_rich Low_complexity Low_complexity 1 45 0 3 681 21 0 0 0 chr3L 12639176 12639197 -11904360 + AT_rich Low_complexity Low_complexity 1 21 0 3 681 22 56 0 0 chr3L 12643912 12643948 -11899609 + AT_rich Low_complexity Low_complexity 1 36 0 3 681 21 36 0 0 chr3L 12647021 12647049 -11896508 + AT_rich Low_complexity Low_complexity 1 28 0 3 681 30 0 0 0 chr3L 12647668 12647698 -11895859 + AT_rich Low_complexity Low_complexity 1 30 0 3 681 186 43 0 0 chr3L 12650811 12650834 -11892723 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 681 199 161 18 18 chr3L 12651052 12651109 -11892448 + (CGGA)n Simple_repeat Simple_repeat 1 57 0 3 681 235 232 0 0 chr3L 12651483 12651539 -11892018 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 3 681 201 39 0 0 chr3L 12652583 12652609 -11890948 + (GAATG)n Simple_repeat Simple_repeat 3 28 0 3 681 24 32 0 0 chr3L 12653255 12653286 -11890271 + AT_rich Low_complexity Low_complexity 1 31 0 3 681 243 133 0 0 chr3L 12653937 12653982 -11889575 + (GATTG)n Simple_repeat Simple_repeat 3 47 0 3 681 22 0 0 0 chr3L 12654105 12654127 -11889430 + AT_rich Low_complexity Low_complexity 1 22 0 3 681 249 57 0 0 chr3L 12654227 12654262 -11889295 + (CGAAT)n Simple_repeat Simple_repeat 3 37 0 3 681 285 75 0 0 chr3L 12654529 12654569 -11888988 + (CAG)n Simple_repeat Simple_repeat 1 40 0 3 681 220 256 0 0 chr3L 12654601 12654644 -11888913 + (CGGA)n Simple_repeat Simple_repeat 2 44 0 3 681 219 88 0 0 chr3L 12654906 12654940 -11888617 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 3 681 38 51 0 0 chr3L 12655369 12655428 -11888129 + AT_rich Low_complexity Low_complexity 1 59 0 3 681 37 0 0 0 chr3L 12656583 12656620 -11886937 + AT_rich Low_complexity Low_complexity 1 37 0 3 681 28 48 0 0 chr3L 12660060 12660102 -11883455 + AT_rich Low_complexity Low_complexity 1 42 0 3 681 216 175 0 0 chr3L 12660530 12660570 -11882987 + (GAGTG)n Simple_repeat Simple_repeat 1 40 0 3 681 25 0 0 0 chr3L 12661187 12661212 -11882345 + AT_rich Low_complexity Low_complexity 1 25 0 3 681 26 0 0 0 chr3L 12662103 12662129 -11881428 + AT_rich Low_complexity Low_complexity 1 26 0 3 681 186 71 0 0 chr3L 12663466 12663494 -11880063 + (A)n Simple_repeat Simple_repeat 1 28 0 3 681 25 0 0 0 chr3L 12665119 12665144 -11878413 + AT_rich Low_complexity Low_complexity 1 25 0 3 681 21 57 0 0 chr3L 12666945 12666980 -11876577 + AT_rich Low_complexity Low_complexity 1 35 0 3 681 26 64 0 0 chr3L 12672227 12672274 -11871283 + AT_rich Low_complexity Low_complexity 1 47 0 3 681 24 0 0 0 chr3L 12672860 12672884 -11870673 + AT_rich Low_complexity Low_complexity 1 24 0 3 681 194 57 0 54 chr3L 12673123 12673160 -11870397 + (TATAG)n Simple_repeat Simple_repeat 1 35 0 3 681 221 163 0 0 chr3L 12677373 12677416 -11866141 + A-rich Low_complexity Low_complexity 1 43 0 3 681 22 70 0 0 chr3L 12678317 12678360 -11865197 + AT_rich Low_complexity Low_complexity 1 43 0 3 681 26 0 0 0 chr3L 12678431 12678457 -11865100 + AT_rich Low_complexity Low_complexity 1 26 0 3 681 225 213 16 0 chr3L 12680680 12680741 -11862816 + (CATTC)n Simple_repeat Simple_repeat 3 64 0 3 681 205 205 0 0 chr3L 12681501 12681540 -11862017 + A-rich Low_complexity Low_complexity 1 39 0 3 681 258 95 0 0 chr3L 12681885 12681927 -11861630 + (CTG)n Simple_repeat Simple_repeat 1 42 0 3 681 225 94 0 0 chr3L 12683458 12683490 -11860067 + (GCTTG)n Simple_repeat Simple_repeat 4 35 0 3 681 216 196 0 51 chr3L 12683986 12684045 -11859512 + CT-rich Low_complexity Low_complexity 2 57 0 3 681 246 151 11 55 chr3L 12684128 12684219 -11859338 - ROO_I LTR Pao -7529 727 641 3 681 43 88 0 0 chr3L 12684571 12684684 -11858873 + AT_rich Low_complexity Low_complexity 1 113 0 3 681 238 216 0 0 chr3L 12685344 12685395 -11858162 + T-rich Low_complexity Low_complexity 1 51 0 3 681 191 36 36 0 chr3L 12685691 12685719 -11857838 + (TTG)n Simple_repeat Simple_repeat 2 30 0 3 681 396 184 0 28 chr3L 12685752 12685858 -11857699 + ROO_I LTR Pao 641 743 -7513 3 681 311 96 0 19 chr3L 12685965 12686018 -11857539 + (CTG)n Simple_repeat Simple_repeat 2 53 0 3 681 255 61 0 0 chr3L 12688773 12688806 -11854751 + (CATAC)n Simple_repeat Simple_repeat 2 34 0 3 681 226 196 0 21 chr3L 12688862 12688909 -11854648 + (TTG)n Simple_repeat Simple_repeat 1 46 0 3 681 33 0 0 0 chr3L 12689438 12689471 -11854086 + AT_rich Low_complexity Low_complexity 1 33 0 3 681 205 191 0 0 chr3L 12691504 12691546 -11852011 + A-rich Low_complexity Low_complexity 1 42 0 3 681 207 114 29 0 chr3L 12692011 12692046 -11851511 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 681 222 176 0 0 chr3L 12692726 12692777 -11850780 + (TCCA)n Simple_repeat Simple_repeat 2 52 0 3 681 26 0 0 0 chr3L 12693094 12693120 -11850437 + AT_rich Low_complexity Low_complexity 1 26 0 3 681 204 97 0 0 chr3L 12693732 12693763 -11849794 + (CCGAA)n Simple_repeat Simple_repeat 5 35 0 3 681 225 102 16 33 chr3L 12694250 12694311 -11849246 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 681 194 156 22 0 chr3L 12694393 12694438 -11849119 + (CAA)n Simple_repeat Simple_repeat 1 46 0 3 681 21 89 0 0 chr3L 12694644 12694700 -11848857 + AT_rich Low_complexity Low_complexity 1 56 0 3 681 295 238 0 0 chr3L 12696000 12696080 -11847477 - ROO_I LTR Pao -7518 738 659 3 681 215 245 0 0 chr3L 12698798 12698851 -11844706 + A-rich Low_complexity Low_complexity 1 53 0 3 681 208 317 0 0 chr3L 12700705 12700765 -11842792 + (CGA)n Simple_repeat Simple_repeat 1 60 0 3 681 218 188 0 0 chr3L 12701339 12701387 -11842170 + (CAG)n Simple_repeat Simple_repeat 1 48 0 3 681 231 36 0 0 chr3L 12702660 12702688 -11840869 + (CATA)n Simple_repeat Simple_repeat 2 29 0 3 681 22 0 0 0 chr3L 12703108 12703130 -11840427 + AT_rich Low_complexity Low_complexity 1 22 0 3 681 183 42 0 0 chr3L 12707495 12707519 -11836038 + (T)n Simple_repeat Simple_repeat 1 24 0 3 681 236 204 0 0 chr3L 12708044 12708093 -11835464 + A-rich Low_complexity Low_complexity 1 49 0 3 681 207 265 0 20 chr3L 12708885 12708935 -11834622 + (TCCG)n Simple_repeat Simple_repeat 2 50 0 3 681 227 79 26 0 chr3L 12709153 12709191 -11834366 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 3 681 24 32 0 0 chr3L 12709648 12709679 -11833878 + AT_rich Low_complexity Low_complexity 1 31 0 3 681 207 146 0 0 chr3L 12710332 12710373 -11833184 + (ATG)n Simple_repeat Simple_repeat 2 42 0 3 681 25 31 0 0 chr3L 12710821 12710853 -11832704 + AT_rich Low_complexity Low_complexity 1 32 0 3 681 23 54 0 0 chr3L 12710936 12710973 -11832584 + AT_rich Low_complexity Low_complexity 1 37 0 3 681 24 32 0 0 chr3L 12712135 12712166 -11831391 + AT_rich Low_complexity Low_complexity 1 31 0 3 681 218 213 0 21 chr3L 12713142 12713190 -11830367 + (CAGTT)n Simple_repeat Simple_repeat 1 47 0 3 682 53 40 0 0 chr3L 12715247 12715321 -11828236 + AT_rich Low_complexity Low_complexity 1 74 0 3 682 21 36 0 0 chr3L 12715848 12715876 -11827681 + AT_rich Low_complexity Low_complexity 1 28 0 3 682 180 0 0 0 chr3L 12716752 12716772 -11826785 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 682 21 36 0 0 chr3L 12717069 12717097 -11826460 + AT_rich Low_complexity Low_complexity 1 28 0 3 682 21 36 0 0 chr3L 12719040 12719068 -11824489 + AT_rich Low_complexity Low_complexity 1 28 0 3 682 22 35 0 0 chr3L 12719961 12719990 -11823567 + AT_rich Low_complexity Low_complexity 1 29 0 3 682 201 39 0 0 chr3L 12720656 12720682 -11822875 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 682 38 22 0 0 chr3L 12721164 12721209 -11822348 + AT_rich Low_complexity Low_complexity 1 45 0 3 682 23 78 0 0 chr3L 12723257 12723308 -11820249 + AT_rich Low_complexity Low_complexity 1 51 0 3 682 27 0 0 0 chr3L 12725608 12725635 -11817922 + AT_rich Low_complexity Low_complexity 1 27 0 3 682 23 0 0 0 chr3L 12725946 12725969 -11817588 + AT_rich Low_complexity Low_complexity 1 23 0 3 682 28 29 0 0 chr3L 12731197 12731232 -11812325 + AT_rich Low_complexity Low_complexity 1 35 0 3 682 23 54 0 0 chr3L 12734168 12734205 -11809352 + AT_rich Low_complexity Low_complexity 1 37 0 3 682 27 0 0 0 chr3L 12734623 12734650 -11808907 + AT_rich Low_complexity Low_complexity 1 27 0 3 682 21 0 0 0 chr3L 12734743 12734764 -11808793 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 24 67 0 0 chr3L 12735260 12735305 -11808252 + AT_rich Low_complexity Low_complexity 1 45 0 3 682 25 51 0 0 chr3L 12736747 12736786 -11806771 + AT_rich Low_complexity Low_complexity 1 39 0 3 682 27 0 0 0 chr3L 12737863 12737890 -11805667 + AT_rich Low_complexity Low_complexity 1 27 0 3 682 283 242 0 0 chr3L 12738275 12738341 -11805216 - DNAREP1_DM LINE Penelope -528 66 1 3 682 30 45 0 0 chr3L 12738341 12738385 -11805172 + AT_rich Low_complexity Low_complexity 1 44 0 3 682 247 319 0 0 chr3L 12743968 12744037 -11799520 + (CATA)n Simple_repeat Simple_repeat 3 71 0 3 682 23 0 0 0 chr3L 12747319 12747342 -11796215 + AT_rich Low_complexity Low_complexity 1 23 0 3 682 27 29 0 0 chr3L 12749466 12749500 -11794057 + AT_rich Low_complexity Low_complexity 1 34 0 3 682 22 35 0 0 chr3L 12766883 12766912 -11776645 + AT_rich Low_complexity Low_complexity 1 29 0 3 682 22 56 0 0 chr3L 12767039 12767075 -11776482 + AT_rich Low_complexity Low_complexity 1 36 0 3 682 23 0 0 0 chr3L 12778520 12778543 -11765014 + AT_rich Low_complexity Low_complexity 1 23 0 3 682 42 36 0 0 chr3L 12782319 12782375 -11761182 + AT_rich Low_complexity Low_complexity 1 56 0 3 682 21 0 0 0 chr3L 12783830 12783851 -11759706 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 180 0 0 0 chr3L 12793397 12793417 -11750140 + (A)n Simple_repeat Simple_repeat 1 20 0 3 682 22 0 0 0 chr3L 12795683 12795705 -11747852 + AT_rich Low_complexity Low_complexity 1 22 0 3 682 189 74 0 0 chr3L 12795968 12795995 -11747562 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3 682 26 64 0 0 chr3L 12796206 12796253 -11747304 + AT_rich Low_complexity Low_complexity 1 47 0 3 682 218 275 14 0 chr3L 12796494 12796563 -11746994 + (TATATG)n Simple_repeat Simple_repeat 4 73 0 3 682 186 103 0 0 chr3L 12797586 12797615 -11745942 + (TC)n Simple_repeat Simple_repeat 1 29 0 3 682 207 320 0 0 chr3L 12797962 12798040 -11745517 + (CACG)n Simple_repeat Simple_repeat 3 80 0 3 682 31 82 0 0 chr3L 12799781 12799854 -11743703 + AT_rich Low_complexity Low_complexity 1 73 0 3 682 37 62 0 0 chr3L 12808530 12808595 -11734962 + AT_rich Low_complexity Low_complexity 1 65 0 3 682 29 0 0 0 chr3L 12817784 12817813 -11725744 + AT_rich Low_complexity Low_complexity 1 29 0 3 682 23 33 0 0 chr3L 12817984 12818014 -11725543 + AT_rich Low_complexity Low_complexity 1 30 0 3 682 21 0 0 0 chr3L 12818156 12818177 -11725380 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 23 0 0 0 chr3L 12819943 12819966 -11723591 + AT_rich Low_complexity Low_complexity 1 23 0 3 682 26 93 0 0 chr3L 12827003 12827078 -11716479 + AT_rich Low_complexity Low_complexity 1 75 0 3 682 26 0 0 0 chr3L 12828497 12828523 -11715034 + AT_rich Low_complexity Low_complexity 1 26 0 3 682 42 48 0 0 chr3L 12828537 12828600 -11714957 + AT_rich Low_complexity Low_complexity 1 63 0 3 682 249 83 0 0 chr3L 12829709 12829745 -11713812 + (CAT)n Simple_repeat Simple_repeat 2 37 0 3 682 27 0 0 0 chr3L 12831698 12831725 -11711832 + AT_rich Low_complexity Low_complexity 1 27 0 3 682 33 43 0 0 chr3L 12837184 12837231 -11706326 + AT_rich Low_complexity Low_complexity 1 47 0 3 682 21 0 0 0 chr3L 12840270 12840291 -11703266 + AT_rich Low_complexity Low_complexity 1 21 0 3 682 21 57 0 0 chr3L 12840852 12840887 -11702670 + AT_rich Low_complexity Low_complexity 1 35 0 3 683 24 32 0 0 chr3L 12846236 12846267 -11697290 + AT_rich Low_complexity Low_complexity 1 31 0 3 683 24 32 0 0 chr3L 12846433 12846464 -11697093 + AT_rich Low_complexity Low_complexity 1 31 0 3 683 25 31 0 0 chr3L 12847374 12847406 -11696151 + AT_rich Low_complexity Low_complexity 1 32 0 3 683 21 0 0 0 chr3L 12850412 12850433 -11693124 + AT_rich Low_complexity Low_complexity 1 21 0 3 683 28 79 0 0 chr3L 12850602 12850665 -11692892 + AT_rich Low_complexity Low_complexity 1 63 0 3 683 21 71 0 0 chr3L 12851138 12851180 -11692377 + AT_rich Low_complexity Low_complexity 1 42 0 3 683 24 53 0 0 chr3L 12851394 12851432 -11692125 + AT_rich Low_complexity Low_complexity 1 38 0 3 683 22 0 0 0 chr3L 12852094 12852116 -11691441 + AT_rich Low_complexity Low_complexity 1 22 0 3 683 33 0 0 0 chr3L 12853860 12853893 -11689664 + AT_rich Low_complexity Low_complexity 1 33 0 3 683 210 37 0 0 chr3L 12856515 12856542 -11687015 + (CAA)n Simple_repeat Simple_repeat 1 27 0 3 683 31 76 0 0 chr3L 12857153 12857219 -11686338 + AT_rich Low_complexity Low_complexity 1 66 0 3 683 519 71 11 23 chr3L 12857736 12857823 -11685734 + (CAA)n Simple_repeat Simple_repeat 3 88 0 3 683 24 53 0 0 chr3L 12858289 12858327 -11685230 + AT_rich Low_complexity Low_complexity 1 38 0 3 683 189 0 0 0 chr3L 12858360 12858381 -11685176 + (TAA)n Simple_repeat Simple_repeat 1 21 0 3 683 187 93 47 0 chr3L 12858992 12859035 -11684522 + (TAAA)n Simple_repeat Simple_repeat 4 48 0 3 683 223 174 0 0 chr3L 12860207 12860253 -11683304 + A-rich Low_complexity Low_complexity 1 46 0 3 683 21 36 0 0 chr3L 12860761 12860789 -11682768 + AT_rich Low_complexity Low_complexity 1 28 0 3 683 22 0 0 0 chr3L 12862255 12862277 -11681280 + AT_rich Low_complexity Low_complexity 1 22 0 3 683 198 91 0 0 chr3L 12863843 12863876 -11679681 + (A)n Simple_repeat Simple_repeat 1 33 0 3 683 207 88 0 29 chr3L 12866090 12866125 -11677432 + (TTTCG)n Simple_repeat Simple_repeat 2 35 0 3 683 23 54 0 0 chr3L 12866312 12866349 -11677208 + AT_rich Low_complexity Low_complexity 1 37 0 3 683 21 0 0 0 chr3L 12866442 12866463 -11677094 + AT_rich Low_complexity Low_complexity 1 21 0 3 683 198 71 0 0 chr3L 12867233 12867261 -11676296 + (CA)n Simple_repeat Simple_repeat 2 29 0 3 683 19150 4 0 4 chr3L 12868103 12870312 -11673245 - LINEJ1_DM LINE Jockey 0 5020 2821 3 683 21 0 0 0 chr3L 12870771 12870792 -11672765 + AT_rich Low_complexity Low_complexity 1 21 0 3 683 34 65 0 0 chr3L 12871507 12871569 -11671988 + AT_rich Low_complexity Low_complexity 1 62 0 3 683 204 40 0 0 chr3L 12873107 12873132 -11670425 + (CAGAA)n Simple_repeat Simple_repeat 3 27 0 3 683 21 0 0 0 chr3L 12873465 12873486 -11670071 + AT_rich Low_complexity Low_complexity 1 21 0 3 683 21 0 0 0 chr3L 12874137 12874158 -11669399 + AT_rich Low_complexity Low_complexity 1 21 0 3 683 29 0 0 0 chr3L 12874950 12874979 -11668578 + AT_rich Low_complexity Low_complexity 1 29 0 3 683 26 0 0 0 chr3L 12876839 12876865 -11666692 + AT_rich Low_complexity Low_complexity 1 26 0 3 683 192 200 0 0 chr3L 12885205 12885250 -11658307 + (CAA)n Simple_repeat Simple_repeat 2 46 0 3 683 198 71 0 0 chr3L 12885669 12885697 -11657860 + (GA)n Simple_repeat Simple_repeat 1 28 0 3 683 46 68 0 0 chr3L 12886243 12886331 -11657226 + AT_rich Low_complexity Low_complexity 1 88 0 3 683 345 47 0 0 chr3L 12888267 12888310 -11655247 + (CA)n Simple_repeat Simple_repeat 1 43 0 3 683 24 32 0 0 chr3L 12888773 12888804 -11654753 + AT_rich Low_complexity Low_complexity 1 31 0 3 683 204 269 19 19 chr3L 12889627 12889733 -11653824 + A-rich Low_complexity Low_complexity 3 108 0 3 683 23 0 0 0 chr3L 12891178 12891201 -11652356 + AT_rich Low_complexity Low_complexity 1 23 0 3 683 22 88 0 0 chr3L 12892436 12892493 -11651064 + AT_rich Low_complexity Low_complexity 1 57 0 3 683 28 29 0 0 chr3L 12893789 12893824 -11649733 + AT_rich Low_complexity Low_complexity 1 35 0 3 683 270 164 0 0 chr3L 12899678 12899733 -11643824 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 683 24 32 0 0 chr3L 12899833 12899864 -11643693 + AT_rich Low_complexity Low_complexity 1 31 0 3 683 24 0 0 0 chr3L 12902284 12902308 -11641249 + AT_rich Low_complexity Low_complexity 1 24 0 3 683 233 208 0 0 chr3L 12906642 12906690 -11636867 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 3 683 33 43 0 0 chr3L 12908715 12908762 -11634795 + AT_rich Low_complexity Low_complexity 1 47 0 3 683 195 139 0 0 chr3L 12911856 12911892 -11631665 + (A)n Simple_repeat Simple_repeat 1 36 0 3 683 47321 6 0 0 chr3L 12912440 12917662 -11625895 - DMRT1B LINE R1 0 5183 1 3 683 207 69 0 0 chr3L 12917899 12917928 -11625629 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 683 21 0 0 0 chr3L 12919618 12919639 -11623918 + AT_rich Low_complexity Low_complexity 1 21 0 3 683 25 0 0 0 chr3L 12922788 12922813 -11620744 + AT_rich Low_complexity Low_complexity 1 25 0 3 683 363 69 259 0 chr3L 12922865 12922923 -11620634 - DNAREP1_DM LINE Penelope 0 594 522 3 683 280 211 0 0 chr3L 12922940 12922992 -11620565 - DNAREP1_DM LINE Penelope -535 59 8 3 683 25 51 0 0 chr3L 12922998 12923037 -11620520 + AT_rich Low_complexity Low_complexity 1 39 0 3 683 21 57 0 0 chr3L 12927370 12927405 -11616152 + AT_rich Low_complexity Low_complexity 1 35 0 3 683 27 29 0 0 chr3L 12927452 12927486 -11616071 + AT_rich Low_complexity Low_complexity 1 34 0 3 683 198 71 0 0 chr3L 12928311 12928339 -11615218 + (T)n Simple_repeat Simple_repeat 1 28 0 3 683 23 33 0 0 chr3L 12931579 12931609 -11611948 + AT_rich Low_complexity Low_complexity 1 30 0 3 683 29 0 0 0 chr3L 12934327 12934356 -11609201 + AT_rich Low_complexity Low_complexity 1 29 0 3 683 21 36 0 0 chr3L 12935122 12935150 -11608407 + AT_rich Low_complexity Low_complexity 1 28 0 3 683 237 163 0 0 chr3L 12935737 12935786 -11607771 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 683 38 39 0 0 chr3L 12937031 12937083 -11606474 + AT_rich Low_complexity Low_complexity 1 52 0 3 683 213 39 0 0 chr3L 12940774 12940800 -11602757 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 683 22 0 0 0 chr3L 12942273 12942295 -11601262 + AT_rich Low_complexity Low_complexity 1 22 0 3 683 264 77 0 0 chr3L 12942593 12942632 -11600925 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 683 30 69 0 0 chr3L 12946777 12946835 -11596722 + AT_rich Low_complexity Low_complexity 1 58 0 3 683 394 162 0 0 chr3L 12946843 12946911 -11596646 + DNAREP1_DM LINE Penelope 369 436 -158 3 683 245 33 0 0 chr3L 12946909 12946939 -11596618 + DNAREP1_DM LINE Penelope 565 594 0 3 683 22 0 0 0 chr3L 12949723 12949745 -11593812 + AT_rich Low_complexity Low_complexity 1 22 0 3 683 2273 7 0 0 chr3L 12950941 12951217 -11592340 - Copia_LTR LTR Copia 0 276 1 3 683 15026 2 0 0 chr3L 12951217 12952984 -11590573 - Copia_I LTR Copia 0 4593 2827 3 683 17938 2 12 0 chr3L 12952987 12955089 -11588468 - Copia_I LTR Copia -2466 2127 1 3 683 2273 7 0 0 chr3L 12955089 12955365 -11588192 - Copia_LTR LTR Copia 0 276 1 3 683 22 0 0 0 chr3L 12957268 12957290 -11586267 + AT_rich Low_complexity Low_complexity 1 22 0 3 683 27 29 0 0 chr3L 12965593 12965627 -11577930 + AT_rich Low_complexity Low_complexity 1 34 0 3 684 216 0 0 0 chr3L 12979530 12979554 -11564003 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 684 21 0 0 0 chr3L 12979730 12979751 -11563806 + AT_rich Low_complexity Low_complexity 1 21 0 3 684 27 0 0 0 chr3L 12980531 12980558 -11562999 + AT_rich Low_complexity Low_complexity 1 27 0 3 684 26 0 0 0 chr3L 12983675 12983701 -11559856 + AT_rich Low_complexity Low_complexity 1 26 0 3 684 27 49 0 0 chr3L 12983747 12983788 -11559769 + AT_rich Low_complexity Low_complexity 1 41 0 3 684 36 23 0 0 chr3L 12983888 12983931 -11559626 + AT_rich Low_complexity Low_complexity 1 43 0 3 684 182 150 0 24 chr3L 12985306 12985347 -11558210 + GA-rich Low_complexity Low_complexity 5 44 0 3 684 180 125 0 0 chr3L 12991310 12991342 -11552215 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 684 219 222 24 12 chr3L 12991744 12991826 -11551731 + (TATAA)n Simple_repeat Simple_repeat 5 87 0 3 684 180 77 0 0 chr3L 12995794 12995820 -11547737 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 684 46 0 0 0 chr3L 12998549 12998595 -11544962 + AT_rich Low_complexity Low_complexity 1 46 0 3 684 23 68 0 0 chr3L 12998636 12998680 -11544877 + AT_rich Low_complexity Low_complexity 1 44 0 3 684 881 86 83 26 chr3L 12999588 12999744 -11543813 - DNAREP1_DM LINE Penelope -426 168 4 3 684 32 43 0 0 chr3L 13001417 13001463 -11542094 + AT_rich Low_complexity Low_complexity 1 46 0 3 684 23 33 0 0 chr3L 13002430 13002460 -11541097 + AT_rich Low_complexity Low_complexity 1 30 0 3 684 21 57 0 0 chr3L 13002528 13002563 -11540994 + AT_rich Low_complexity Low_complexity 1 35 0 3 684 21 0 0 0 chr3L 13004994 13005015 -11538542 + AT_rich Low_complexity Low_complexity 1 21 0 3 684 21 0 0 0 chr3L 13005140 13005161 -11538396 + AT_rich Low_complexity Low_complexity 1 21 0 3 684 39 38 0 0 chr3L 13008715 13008768 -11534789 + AT_rich Low_complexity Low_complexity 1 53 0 3 684 21 71 0 0 chr3L 13008867 13008909 -11534648 + AT_rich Low_complexity Low_complexity 1 42 0 3 684 40 37 0 0 chr3L 13011223 13011277 -11532280 + AT_rich Low_complexity Low_complexity 1 54 0 3 684 25 0 0 0 chr3L 13015933 13015958 -11527599 + AT_rich Low_complexity Low_complexity 1 25 0 3 684 21 0 0 0 chr3L 13020339 13020360 -11523197 + AT_rich Low_complexity Low_complexity 1 21 0 3 684 362 189 36 54 chr3L 13021863 13021975 -11521582 + ROO_I LTR Pao 634 743 -7513 3 684 279 150 0 0 chr3L 13022309 13022369 -11521188 + (CCAA)n Simple_repeat Simple_repeat 1 60 0 3 684 224 100 0 24 chr3L 13026978 13027019 -11516538 + (CATA)n Simple_repeat Simple_repeat 3 42 0 3 684 318 115 0 0 chr3L 13028605 13028657 -11514900 + (ATTG)n Simple_repeat Simple_repeat 3 54 0 3 684 198 0 0 0 chr3L 13029316 13029338 -11514219 + (GCTG)n Simple_repeat Simple_repeat 2 23 0 3 684 189 154 0 0 chr3L 13032980 13033019 -11510538 + GA-rich Low_complexity Low_complexity 5 43 0 3 684 207 258 0 0 chr3L 13033232 13033298 -11510259 + GA-rich Low_complexity Low_complexity 2 67 0 3 684 258 116 0 0 chr3L 13037861 13037904 -11505653 + (CAA)n Simple_repeat Simple_repeat 3 45 0 3 684 194 136 23 0 chr3L 13039521 13039565 -11503992 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 684 227 204 0 0 chr3L 13039695 13039744 -11503813 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 684 183 100 0 0 chr3L 13043270 13043300 -11500257 + (CATTC)n Simple_repeat Simple_repeat 5 34 0 3 684 201 147 0 0 chr3L 13045246 13045280 -11498277 + (TCC)n Simple_repeat Simple_repeat 1 34 0 3 684 25 51 0 0 chr3L 13045778 13045817 -11497740 + AT_rich Low_complexity Low_complexity 1 39 0 3 684 22 35 0 0 chr3L 13047870 13047899 -11495658 + AT_rich Low_complexity Low_complexity 1 29 0 3 684 48 100 0 0 chr3L 13049612 13049772 -11493785 + AT_rich Low_complexity Low_complexity 1 160 0 3 684 22 35 0 0 chr3L 13052500 13052529 -11491028 + AT_rich Low_complexity Low_complexity 1 29 0 3 684 61 0 0 0 chr3L 13054144 13054205 -11489352 + AT_rich Low_complexity Low_complexity 1 61 0 3 684 21 0 0 0 chr3L 13056363 13056384 -11487173 + AT_rich Low_complexity Low_complexity 1 21 0 3 684 22 35 0 0 chr3L 13057101 13057130 -11486427 + AT_rich Low_complexity Low_complexity 1 29 0 3 684 204 143 0 0 chr3L 13058297 13058339 -11485218 + (CAGC)n Simple_repeat Simple_repeat 3 44 0 3 684 24 77 0 0 chr3L 13059498 13059550 -11484007 + AT_rich Low_complexity Low_complexity 1 52 0 3 684 22 0 0 0 chr3L 13060847 13060869 -11482688 + AT_rich Low_complexity Low_complexity 1 22 0 3 684 21 0 0 0 chr3L 13063630 13063651 -11479906 + AT_rich Low_complexity Low_complexity 1 21 0 3 684 209 229 16 0 chr3L 13068902 13068963 -11474594 + A-rich Low_complexity Low_complexity 4 65 0 3 684 204 40 0 0 chr3L 13069592 13069617 -11473940 + (CAT)n Simple_repeat Simple_repeat 1 25 0 3 684 28 29 0 0 chr3L 13070066 13070101 -11473456 + AT_rich Low_complexity Low_complexity 1 35 0 3 684 25 51 0 0 chr3L 13070143 13070182 -11473375 + AT_rich Low_complexity Low_complexity 1 39 0 3 684 226 208 0 36 chr3L 13073527 13073582 -11469975 + (CATCC)n Simple_repeat Simple_repeat 5 57 0 3 684 213 39 0 0 chr3L 13073586 13073612 -11469945 + (TCCA)n Simple_repeat Simple_repeat 3 28 0 3 684 195 42 0 0 chr3L 13073867 13073891 -11469666 + (CACTC)n Simple_repeat Simple_repeat 2 25 0 3 684 22 0 0 0 chr3L 13080185 13080207 -11463350 + AT_rich Low_complexity Low_complexity 1 22 0 3 684 23 33 0 0 chr3L 13086419 13086449 -11457108 + AT_rich Low_complexity Low_complexity 1 30 0 3 684 21 71 0 0 chr3L 13087348 13087390 -11456167 + AT_rich Low_complexity Low_complexity 1 42 0 3 684 21 0 0 0 chr3L 13087727 13087748 -11455809 + AT_rich Low_complexity Low_complexity 1 21 0 3 684 22 0 0 0 chr3L 13093420 13093442 -11450115 + AT_rich Low_complexity Low_complexity 1 22 0 3 684 206 219 0 0 chr3L 13093496 13093537 -11450020 + A-rich Low_complexity Low_complexity 1 41 0 3 684 21 95 0 0 chr3L 13094155 13094218 -11449339 + AT_rich Low_complexity Low_complexity 1 63 0 3 684 22 0 0 0 chr3L 13095452 13095474 -11448083 + AT_rich Low_complexity Low_complexity 1 22 0 3 684 24 0 0 0 chr3L 13096396 13096420 -11447137 + AT_rich Low_complexity Low_complexity 1 24 0 3 684 30 83 0 0 chr3L 13098223 13098295 -11445262 + AT_rich Low_complexity Low_complexity 1 72 0 3 684 216 0 0 0 chr3L 13098589 13098613 -11444944 + (A)n Simple_repeat Simple_repeat 1 24 0 3 684 192 40 0 0 chr3L 13099362 13099387 -11444170 + (T)n Simple_repeat Simple_repeat 1 25 0 3 684 48 77 0 0 chr3L 13101184 13101288 -11442269 + AT_rich Low_complexity Low_complexity 1 104 0 3 684 27 29 0 0 chr3L 13102454 13102488 -11441069 + AT_rich Low_complexity Low_complexity 1 34 0 3 684 180 0 0 0 chr3L 13103983 13104003 -11439554 + (G)n Simple_repeat Simple_repeat 1 20 0 3 685 189 0 0 0 chr3L 13107246 13107267 -11436290 + (CCA)n Simple_repeat Simple_repeat 1 21 0 3 685 212 139 0 44 chr3L 13107573 13107618 -11435939 + A-rich Low_complexity Low_complexity 3 45 0 3 685 27 0 0 0 chr3L 13114455 13114482 -11429075 + AT_rich Low_complexity Low_complexity 1 27 0 3 685 22 0 0 0 chr3L 13114704 13114726 -11428831 + AT_rich Low_complexity Low_complexity 1 22 0 3 685 21 0 0 0 chr3L 13114951 13114972 -11428585 + AT_rich Low_complexity Low_complexity 1 21 0 3 685 22 0 0 0 chr3L 13115338 13115360 -11428197 + AT_rich Low_complexity Low_complexity 1 22 0 3 685 22 0 0 0 chr3L 13116668 13116690 -11426867 + AT_rich Low_complexity Low_complexity 1 22 0 3 685 47 0 0 0 chr3L 13119382 13119429 -11424128 + AT_rich Low_complexity Low_complexity 1 47 0 3 685 25 51 0 0 chr3L 13120736 13120775 -11422782 + AT_rich Low_complexity Low_complexity 1 39 0 3 685 41 58 0 0 chr3L 13132048 13132117 -11411440 + AT_rich Low_complexity Low_complexity 1 69 0 3 685 30 45 0 0 chr3L 13134413 13134457 -11409100 + AT_rich Low_complexity Low_complexity 1 44 0 3 685 192 77 0 0 chr3L 13139685 13139711 -11403846 + (CAAAC)n Simple_repeat Simple_repeat 4 29 0 3 685 26 50 0 0 chr3L 13143354 13143394 -11400163 + AT_rich Low_complexity Low_complexity 1 40 0 3 685 25 0 0 0 chr3L 13143549 13143574 -11399983 + AT_rich Low_complexity Low_complexity 1 25 0 3 685 24 0 0 0 chr3L 13145954 13145978 -11397579 + AT_rich Low_complexity Low_complexity 1 24 0 3 685 23 0 0 0 chr3L 13150705 13150728 -11392829 + AT_rich Low_complexity Low_complexity 1 23 0 3 685 180 111 0 0 chr3L 13153651 13153678 -11389879 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 3 685 207 292 0 0 chr3L 13153838 13153886 -11389671 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 3 685 263 71 24 0 chr3L 13153945 13153987 -11389570 + (CATA)n Simple_repeat Simple_repeat 1 43 0 3 685 25 0 0 0 chr3L 13159258 13159283 -11384274 + AT_rich Low_complexity Low_complexity 1 25 0 3 685 25 0 0 0 chr3L 13160798 13160823 -11382734 + AT_rich Low_complexity Low_complexity 1 25 0 3 685 21 36 0 0 chr3L 13162225 13162253 -11381304 + AT_rich Low_complexity Low_complexity 1 28 0 3 685 26 30 0 0 chr3L 13163638 13163671 -11379886 + AT_rich Low_complexity Low_complexity 1 33 0 3 685 26 0 0 0 chr3L 13163826 13163852 -11379705 + AT_rich Low_complexity Low_complexity 1 26 0 3 685 244 259 17 0 chr3L 13164523 13164581 -11378976 + (TTCGGG)n Simple_repeat Simple_repeat 5 63 0 3 685 31 26 0 0 chr3L 13166321 13166359 -11377198 + AT_rich Low_complexity Low_complexity 1 38 0 3 685 22 0 0 0 chr3L 13169850 13169872 -11373685 + AT_rich Low_complexity Low_complexity 1 22 0 3 685 192 182 0 0 chr3L 13171820 13171864 -11371693 + T-rich Low_complexity Low_complexity 1 44 0 3 685 22 56 0 0 chr3L 13172258 13172294 -11371263 + AT_rich Low_complexity Low_complexity 1 36 0 3 685 207 0 0 0 chr3L 13173292 13173315 -11370242 + (CAGCT)n Simple_repeat Simple_repeat 3 25 0 3 685 201 114 22 22 chr3L 13174551 13174596 -11368961 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 3 685 204 40 0 0 chr3L 13176872 13176897 -11366660 + (A)n Simple_repeat Simple_repeat 1 25 0 3 685 29 60 0 0 chr3L 13183574 13183624 -11359933 + AT_rich Low_complexity Low_complexity 1 50 0 3 685 21 0 0 0 chr3L 13184356 13184377 -11359180 + AT_rich Low_complexity Low_complexity 1 21 0 3 685 209 135 27 0 chr3L 13185731 13185768 -11357789 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 3 685 252 86 0 0 chr3L 13189509 13189544 -11354013 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 685 301 186 0 0 chr3L 13193742 13193801 -11349756 + DNAREP1_DM LINE Penelope 1 59 -535 3 685 24 0 0 0 chr3L 13194921 13194945 -11348612 + AT_rich Low_complexity Low_complexity 1 24 0 3 685 28 61 0 0 chr3L 13198767 13198816 -11344741 + AT_rich Low_complexity Low_complexity 1 49 0 3 685 189 107 0 0 chr3L 13200272 13200300 -11343257 + (CTG)n Simple_repeat Simple_repeat 3 30 0 3 685 192 77 0 0 chr3L 13200442 13200468 -11343089 + (CAG)n Simple_repeat Simple_repeat 3 28 0 3 685 219 114 0 0 chr3L 13201920 13201955 -11341602 + (CAT)n Simple_repeat Simple_repeat 1 35 0 3 685 246 81 0 0 chr3L 13202299 13202336 -11341221 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 685 21 36 0 0 chr3L 13202827 13202855 -11340702 + AT_rich Low_complexity Low_complexity 1 28 0 3 685 24 0 0 0 chr3L 13204559 13204583 -11338974 + AT_rich Low_complexity Low_complexity 1 24 0 3 685 21 36 0 0 chr3L 13206289 13206317 -11337240 + AT_rich Low_complexity Low_complexity 1 28 0 3 685 22 0 0 0 chr3L 13208923 13208945 -11334612 + AT_rich Low_complexity Low_complexity 1 22 0 3 685 27 49 0 0 chr3L 13211273 13211314 -11332243 + AT_rich Low_complexity Low_complexity 1 41 0 3 685 26 30 0 0 chr3L 13215517 13215550 -11328007 + AT_rich Low_complexity Low_complexity 1 33 0 3 685 26 74 0 0 chr3L 13216626 13216680 -11326877 + AT_rich Low_complexity Low_complexity 1 54 0 3 685 218 119 0 45 chr3L 13216952 13216996 -11326561 + (TTACG)n Simple_repeat Simple_repeat 4 45 0 3 685 24 32 0 0 chr3L 13220206 13220237 -11323320 + AT_rich Low_complexity Low_complexity 1 31 0 3 685 22 0 0 0 chr3L 13222359 13222381 -11321176 + AT_rich Low_complexity Low_complexity 1 22 0 3 685 236 297 11 0 chr3L 13224349 13224440 -11319117 + (CAT)n Simple_repeat Simple_repeat 1 92 0 3 685 201 74 0 0 chr3L 13224566 13224593 -11318964 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 685 180 0 0 0 chr3L 13227934 13227954 -11315603 + (A)n Simple_repeat Simple_repeat 1 20 0 3 685 21 36 0 0 chr3L 13228477 13228505 -11315052 + AT_rich Low_complexity Low_complexity 1 28 0 3 685 212 95 0 67 chr3L 13228768 13228813 -11314744 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 3 685 21 0 0 0 chr3L 13230015 13230036 -11313521 + AT_rich Low_complexity Low_complexity 1 21 0 3 685 210 71 0 0 chr3L 13230066 13230094 -11313463 + (CGA)n Simple_repeat Simple_repeat 2 29 0 3 685 312 70 0 0 chr3L 13230141 13230184 -11313373 + (TC)n Simple_repeat Simple_repeat 2 44 0 3 685 30 59 0 0 chr3L 13230425 13230476 -11313081 + AT_rich Low_complexity Low_complexity 1 51 0 3 685 24 0 0 0 chr3L 13230846 13230870 -11312687 + AT_rich Low_complexity Low_complexity 1 24 0 3 685 189 0 0 0 chr3L 13233577 13233598 -11309959 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 3 685 183 100 0 0 chr3L 13236575 13236605 -11306952 + (CTG)n Simple_repeat Simple_repeat 3 32 0 3 686 183 42 0 0 chr3L 13246332 13246356 -11297201 + (CTATA)n Simple_repeat Simple_repeat 2 25 0 3 686 198 0 0 0 chr3L 13249627 13249649 -11293908 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 3 686 23 0 0 0 chr3L 13251458 13251481 -11292076 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 226 250 0 0 chr3L 13253069 13253125 -11290432 + (TA)n Simple_repeat Simple_repeat 2 57 0 3 686 26 0 0 0 chr3L 13254038 13254064 -11289493 + AT_rich Low_complexity Low_complexity 1 26 0 3 686 26 30 0 0 chr3L 13258006 13258039 -11285518 + AT_rich Low_complexity Low_complexity 1 33 0 3 686 292 190 24 12 chr3L 13260257 13260342 -11283215 - ROO_I LTR Pao -7523 733 648 3 686 25 31 0 0 chr3L 13260627 13260659 -11282898 + AT_rich Low_complexity Low_complexity 1 32 0 3 686 29 84 0 0 chr3L 13261875 13261946 -11281611 + AT_rich Low_complexity Low_complexity 1 71 0 3 686 35 24 0 0 chr3L 13277071 13277113 -11266444 + AT_rich Low_complexity Low_complexity 1 42 0 3 686 211 156 67 0 chr3L 13279832 13279877 -11263680 + (CAACT)n Simple_repeat Simple_repeat 4 51 0 3 686 22 0 0 0 chr3L 13281172 13281194 -11262363 + AT_rich Low_complexity Low_complexity 1 22 0 3 686 29 0 0 0 chr3L 13281241 13281270 -11262287 + AT_rich Low_complexity Low_complexity 1 29 0 3 686 280 222 0 0 chr3L 13285077 13285149 -11258408 - DNAREP1_DM LINE Penelope 0 594 523 3 686 1500 19 0 0 chr3L 13285179 13285453 -11258104 + (TAGA)n Simple_repeat Simple_repeat 1 274 0 3 686 42 36 0 0 chr3L 13285464 13285520 -11258037 + AT_rich Low_complexity Low_complexity 1 56 0 3 686 23 0 0 0 chr3L 13286154 13286177 -11257380 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 23 0 0 0 chr3L 13286297 13286320 -11257237 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 28 29 0 0 chr3L 13286860 13286895 -11256662 + AT_rich Low_complexity Low_complexity 1 35 0 3 686 40 59 0 0 chr3L 13288451 13288519 -11255038 + AT_rich Low_complexity Low_complexity 1 68 0 3 686 32 0 0 0 chr3L 13292272 13292304 -11251253 + AT_rich Low_complexity Low_complexity 1 32 0 3 686 24 0 0 0 chr3L 13292905 13292929 -11250628 + AT_rich Low_complexity Low_complexity 1 24 0 3 686 28 0 0 0 chr3L 13293040 13293068 -11250489 + AT_rich Low_complexity Low_complexity 1 28 0 3 686 27 0 0 0 chr3L 13293483 13293510 -11250047 + AT_rich Low_complexity Low_complexity 1 27 0 3 686 43 76 0 0 chr3L 13301318 13301410 -11242147 + AT_rich Low_complexity Low_complexity 1 92 0 3 686 35 54 0 0 chr3L 13301490 13301546 -11242011 + AT_rich Low_complexity Low_complexity 1 56 0 3 686 214 182 0 22 chr3L 13305376 13305421 -11238136 + (CAGC)n Simple_repeat Simple_repeat 1 44 0 3 686 24 85 0 0 chr3L 13311867 13311926 -11231631 + AT_rich Low_complexity Low_complexity 1 59 0 3 686 31 68 0 0 chr3L 13312522 13312581 -11230976 + AT_rich Low_complexity Low_complexity 1 59 0 3 686 22 0 0 0 chr3L 13315166 13315188 -11228369 + AT_rich Low_complexity Low_complexity 1 22 0 3 686 198 156 0 0 chr3L 13315206 13315251 -11228306 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 686 22 0 0 0 chr3L 13318329 13318351 -11225206 + AT_rich Low_complexity Low_complexity 1 22 0 3 686 180 97 0 0 chr3L 13321343 13321374 -11222183 + (A)n Simple_repeat Simple_repeat 1 31 0 3 686 30 0 0 0 chr3L 13324410 13324440 -11219117 + AT_rich Low_complexity Low_complexity 1 30 0 3 686 204 67 0 0 chr3L 13329190 13329220 -11214337 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 3 686 23 68 0 0 chr3L 13330280 13330324 -11213233 + AT_rich Low_complexity Low_complexity 1 44 0 3 686 831 48 0 0 chr3L 13331125 13331229 -11212328 + (TA)n Simple_repeat Simple_repeat 2 105 0 3 686 38 22 0 0 chr3L 13333664 13333709 -11209848 + AT_rich Low_complexity Low_complexity 1 45 0 3 686 25 0 0 0 chr3L 13335995 13336020 -11207537 + AT_rich Low_complexity Low_complexity 1 25 0 3 686 24 53 0 0 chr3L 13337081 13337119 -11206438 + AT_rich Low_complexity Low_complexity 1 38 0 3 686 24 85 0 0 chr3L 13338492 13338551 -11205006 + AT_rich Low_complexity Low_complexity 1 59 0 3 686 38 29 0 42 chr3L 13339098 13339169 -11204388 + AT_rich Low_complexity Low_complexity 1 68 0 3 686 246 81 0 0 chr3L 13339639 13339676 -11203881 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 686 182 33 67 0 chr3L 13341998 13342028 -11201529 + (CATTA)n Simple_repeat Simple_repeat 2 33 0 3 686 21 0 0 0 chr3L 13343217 13343238 -11200319 + AT_rich Low_complexity Low_complexity 1 21 0 3 686 21 57 0 0 chr3L 13344368 13344403 -11199154 + AT_rich Low_complexity Low_complexity 1 35 0 3 686 25 31 0 0 chr3L 13349046 13349078 -11194479 + AT_rich Low_complexity Low_complexity 1 32 0 3 686 27 29 0 0 chr3L 13349276 13349310 -11194247 + AT_rich Low_complexity Low_complexity 1 34 0 3 686 230 167 73 29 chr3L 13351565 13351633 -11191924 - DMRPR Unknown Unknown -79 206 136 3 686 204 200 0 0 chr3L 13353208 13353243 -11190314 + (CAG)n Simple_repeat Simple_repeat 1 35 0 3 686 26 0 0 0 chr3L 13353701 13353727 -11189830 + AT_rich Low_complexity Low_complexity 1 26 0 3 686 216 250 0 0 chr3L 13354742 13354786 -11188771 + (CGA)n Simple_repeat Simple_repeat 1 44 0 3 686 26 50 0 0 chr3L 13358164 13358204 -11185353 + AT_rich Low_complexity Low_complexity 1 40 0 3 686 23 33 0 0 chr3L 13359964 13359994 -11183563 + AT_rich Low_complexity Low_complexity 1 30 0 3 686 23 0 0 0 chr3L 13361035 13361058 -11182499 + AT_rich Low_complexity Low_complexity 1 23 0 3 686 21 0 0 0 chr3L 13361181 13361202 -11182355 + AT_rich Low_complexity Low_complexity 1 21 0 3 686 201 74 0 0 chr3L 13362293 13362320 -11181237 + (ATTG)n Simple_repeat Simple_repeat 4 30 0 3 686 21 36 0 0 chr3L 13365796 13365824 -11177733 + AT_rich Low_complexity Low_complexity 1 28 0 3 686 22 35 0 0 chr3L 13367248 13367277 -11176280 + AT_rich Low_complexity Low_complexity 1 29 0 3 686 209 132 26 0 chr3L 13368022 13368060 -11175497 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3 686 208 173 19 0 chr3L 13368310 13368362 -11175195 + (TTA)n Simple_repeat Simple_repeat 2 54 0 3 687 25 51 0 0 chr3L 13372901 13372940 -11170617 + AT_rich Low_complexity Low_complexity 1 39 0 3 687 283 287 0 0 chr3L 13374056 13374157 -11169400 + CT-rich Low_complexity Low_complexity 2 102 0 3 687 349 285 0 40 chr3L 13376608 13376758 -11166799 + GA-rich Low_complexity Low_complexity 1 144 0 3 687 36 82 0 0 chr3L 13381054 13381139 -11162418 + AT_rich Low_complexity Low_complexity 1 85 0 3 687 29 0 0 0 chr3L 13381301 13381330 -11162227 + AT_rich Low_complexity Low_complexity 1 29 0 3 687 22 70 0 0 chr3L 13383271 13383314 -11160243 + AT_rich Low_complexity Low_complexity 1 43 0 3 687 25 0 0 0 chr3L 13383328 13383353 -11160204 + AT_rich Low_complexity Low_complexity 1 25 0 3 687 276 53 0 0 chr3L 13384265 13384303 -11159254 + (CACTC)n Simple_repeat Simple_repeat 5 42 0 3 687 202 132 26 0 chr3L 13384965 13385003 -11158554 + (CAG)n Simple_repeat Simple_repeat 1 39 0 3 687 192 77 0 0 chr3L 13385047 13385073 -11158484 + (CTCTG)n Simple_repeat Simple_repeat 2 27 0 3 687 402 136 0 0 chr3L 13387114 13387195 -11156362 + (CAG)n Simple_repeat Simple_repeat 1 81 0 3 687 261 0 0 0 chr3L 13389829 13389858 -11153699 + (CAT)n Simple_repeat Simple_repeat 3 31 0 3 687 209 275 0 0 chr3L 13391330 13391399 -11152158 + T-rich Low_complexity Low_complexity 1 69 0 3 687 355 188 0 0 chr3L 13392582 13392667 -11150890 - ROO_I LTR Pao -7522 734 650 3 687 198 71 0 0 chr3L 13392755 13392783 -11150774 + (CTG)n Simple_repeat Simple_repeat 2 29 0 3 687 195 100 0 0 chr3L 13393229 13393259 -11150298 + (CTG)n Simple_repeat Simple_repeat 1 30 0 3 687 25 31 0 0 chr3L 13395027 13395059 -11148498 + AT_rich Low_complexity Low_complexity 1 32 0 3 687 26 82 0 0 chr3L 13395240 13395301 -11148256 + AT_rich Low_complexity Low_complexity 1 61 0 3 687 27 49 0 0 chr3L 13398280 13398321 -11145236 + AT_rich Low_complexity Low_complexity 1 41 0 3 687 183 139 0 0 chr3L 13398525 13398561 -11144996 + (CTTTG)n Simple_repeat Simple_repeat 1 36 0 3 687 32 0 0 0 chr3L 13404201 13404233 -11139324 + AT_rich Low_complexity Low_complexity 1 32 0 3 687 25 75 0 0 chr3L 13405652 13405705 -11137852 + AT_rich Low_complexity Low_complexity 1 53 0 3 687 21 0 0 0 chr3L 13406681 13406702 -11136855 + AT_rich Low_complexity Low_complexity 1 21 0 3 687 255 207 0 0 chr3L 13411949 13412007 -11131550 + G-rich Low_complexity Low_complexity 3 60 0 3 687 21 0 0 0 chr3L 13413790 13413811 -11129746 + AT_rich Low_complexity Low_complexity 1 21 0 3 687 189 0 0 0 chr3L 13414033 13414054 -11129503 + (CTG)n Simple_repeat Simple_repeat 3 23 0 3 687 247 143 92 35 chr3L 13415541 13415628 -11127929 - ROO_I LTR Pao -7498 758 667 3 687 201 39 0 0 chr3L 13415852 13415878 -11127679 + (CAT)n Simple_repeat Simple_repeat 1 26 0 3 687 25 51 0 0 chr3L 13417530 13417569 -11125988 + AT_rich Low_complexity Low_complexity 1 39 0 3 687 22 0 0 0 chr3L 13418993 13419015 -11124542 + AT_rich Low_complexity Low_complexity 1 22 0 3 687 23 68 0 0 chr3L 13420073 13420117 -11123440 + AT_rich Low_complexity Low_complexity 1 44 0 3 687 585 159 68 0 chr3L 13421449 13421581 -11121976 + DNAREP1_DM LINE Penelope 2 142 -452 3 687 559 173 104 15 chr3L 13421584 13421719 -11121838 + DNAREP1_DM LINE Penelope 445 591 -3 3 687 267 230 0 54 chr3L 13422322 13422414 -11121143 + (TATATG)n Simple_repeat Simple_repeat 5 91 0 3 687 319 185 0 61 chr3L 13423483 13423581 -11119976 - ROO_I LTR Pao -7527 729 638 3 687 31 26 0 0 chr3L 13427066 13427104 -11116453 + AT_rich Low_complexity Low_complexity 1 38 0 3 687 209 208 0 0 chr3L 13427637 13427685 -11115872 + (TCTG)n Simple_repeat Simple_repeat 3 50 0 3 687 204 97 0 0 chr3L 13428151 13428182 -11115375 + (CAATT)n Simple_repeat Simple_repeat 3 33 0 3 687 25 0 0 0 chr3L 13429193 13429218 -11114339 + AT_rich Low_complexity Low_complexity 1 25 0 3 687 32 26 0 0 chr3L 13430575 13430614 -11112943 + AT_rich Low_complexity Low_complexity 1 39 0 3 687 26 0 0 0 chr3L 13432347 13432373 -11111184 + AT_rich Low_complexity Low_complexity 1 26 0 3 687 33 43 0 0 chr3L 13433763 13433810 -11109747 + AT_rich Low_complexity Low_complexity 1 47 0 3 687 28 48 0 0 chr3L 13435576 13435618 -11107939 + AT_rich Low_complexity Low_complexity 1 42 0 3 687 21 0 0 0 chr3L 13435794 13435815 -11107742 + AT_rich Low_complexity Low_complexity 1 21 0 3 687 218 95 0 23 chr3L 13436282 13436325 -11107232 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 687 252 213 13 0 chr3L 13441167 13441242 -11102315 + ROO_I LTR Pao 669 744 -7512 3 687 25 83 0 0 chr3L 13443494 13443554 -11100003 + AT_rich Low_complexity Low_complexity 1 60 0 3 687 183 139 0 0 chr3L 13460638 13460674 -11082883 + (CTG)n Simple_repeat Simple_repeat 2 37 0 3 687 21 71 0 0 chr3L 13462602 13462644 -11080913 + AT_rich Low_complexity Low_complexity 1 42 0 3 687 23 68 0 0 chr3L 13469475 13469519 -11074038 + AT_rich Low_complexity Low_complexity 1 44 0 3 687 200 239 0 56 chr3L 13470502 13470573 -11072984 + GA-rich Low_complexity Low_complexity 1 67 0 3 687 24 32 0 0 chr3L 13470731 13470762 -11072795 + AT_rich Low_complexity Low_complexity 1 31 0 3 687 324 83 0 0 chr3L 13470937 13470985 -11072572 + (CAG)n Simple_repeat Simple_repeat 2 49 0 3 687 25 0 0 0 chr3L 13474093 13474118 -11069439 + AT_rich Low_complexity Low_complexity 1 25 0 3 687 236 185 0 0 chr3L 13474808 13474862 -11068695 + ROO_I LTR Pao 675 728 -7528 3 687 230 0 33 0 chr3L 13476157 13476187 -11067370 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 687 214 147 0 0 chr3L 13480172 13480206 -11063351 + (GCTG)n Simple_repeat Simple_repeat 3 36 0 3 687 213 39 0 0 chr3L 13481913 13481939 -11061618 + (CAGC)n Simple_repeat Simple_repeat 2 27 0 3 687 181 0 0 65 chr3L 13483057 13483088 -11060469 + (CAGC)n Simple_repeat Simple_repeat 1 29 0 3 687 208 241 0 0 chr3L 13483743 13483797 -11059760 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 3 687 214 214 0 54 chr3L 13485084 13485158 -11058399 + T-rich Low_complexity Low_complexity 1 70 0 3 687 195 69 0 0 chr3L 13485481 13485510 -11058047 + (CGAT)n Simple_repeat Simple_repeat 3 31 0 3 687 234 81 0 0 chr3L 13485645 13485682 -11057875 + (CACTC)n Simple_repeat Simple_repeat 3 39 0 3 687 298 272 23 31 chr3L 13485830 13485959 -11057598 + (CTG)n Simple_repeat Simple_repeat 2 129 0 3 687 258 56 0 0 chr3L 13486930 13486966 -11056591 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 687 195 42 0 0 chr3L 13487584 13487608 -11055949 + (A)n Simple_repeat Simple_repeat 1 24 0 3 687 203 255 0 0 chr3L 13488461 13488508 -11055049 + A-rich Low_complexity Low_complexity 1 47 0 3 687 204 250 0 0 chr3L 13492406 13492454 -11051103 + (TTG)n Simple_repeat Simple_repeat 1 48 0 3 687 186 43 0 0 chr3L 13493276 13493299 -11050258 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 687 215 156 0 86 chr3L 13495182 13495252 -11048305 + (CAACC)n Simple_repeat Simple_repeat 5 68 0 3 687 207 114 0 0 chr3L 13495439 13495474 -11048083 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 687 198 0 0 0 chr3L 13496216 13496238 -11047319 + (CAG)n Simple_repeat Simple_repeat 1 22 0 3 687 257 167 0 43 chr3L 13499042 13499111 -11044446 + (CAG)n Simple_repeat Simple_repeat 3 68 0 3 687 225 154 0 0 chr3L 13499366 13499405 -11044152 + (CAG)n Simple_repeat Simple_repeat 3 41 0 3 687 268 167 0 27 chr3L 13499781 13499855 -11043702 + (CAA)n Simple_repeat Simple_repeat 1 72 0 3 687 267 114 0 0 chr3L 13499925 13499969 -11043588 + (CAG)n Simple_repeat Simple_repeat 1 44 0 3 688 216 97 0 0 chr3L 13501118 13501149 -11042408 + (CAG)n Simple_repeat Simple_repeat 3 33 0 3 688 255 157 0 0 chr3L 13502591 13502642 -11040915 + (CAG)n Simple_repeat Simple_repeat 3 53 0 3 688 261 57 0 0 chr3L 13502718 13502753 -11040804 + (CAG)n Simple_repeat Simple_repeat 1 35 0 3 688 205 98 49 0 chr3L 13503275 13503316 -11040241 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 688 201 129 0 0 chr3L 13510134 13510165 -11033392 + (CTG)n Simple_repeat Simple_repeat 1 31 0 3 688 21 0 0 0 chr3L 13511800 13511821 -11031736 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 21 0 0 0 chr3L 13513591 13513612 -11029945 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 22 0 0 0 chr3L 13513796 13513818 -11029739 + AT_rich Low_complexity Low_complexity 1 22 0 3 688 272 253 4 39 chr3L 13515030 13515204 -11028353 + T-rich Low_complexity Low_complexity 1 167 0 3 688 31 0 0 0 chr3L 13515261 13515292 -11028265 + AT_rich Low_complexity Low_complexity 1 31 0 3 688 216 122 0 0 chr3L 13515420 13515461 -11028096 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 3 688 217 271 11 23 chr3L 13516861 13516948 -11026609 + T-rich Low_complexity Low_complexity 5 90 0 3 688 3975 5 0 0 chr3L 13518311 13518739 -11024818 + ROO_LTR LTR Pao 1 428 0 3 688 55149 1 2 0 chr3L 13518739 13524820 -11018737 + ROO_I LTR Pao 1 6096 -2160 3 688 7182 1 0 0 chr3L 13524819 13525621 -11017936 + ROO_I LTR Pao 7455 8256 0 3 688 3975 5 0 0 chr3L 13525621 13526049 -11017508 + ROO_LTR LTR Pao 1 428 0 3 688 201 94 0 0 chr3L 13527944 13527976 -11015581 + (TAA)n Simple_repeat Simple_repeat 3 34 0 3 688 258 222 14 0 chr3L 13528764 13528836 -11014721 + T-rich Low_complexity Low_complexity 1 73 0 3 688 23 68 0 0 chr3L 13529312 13529356 -11014201 + AT_rich Low_complexity Low_complexity 1 44 0 3 688 237 139 0 0 chr3L 13529646 13529689 -11013868 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 688 22 35 0 0 chr3L 13530024 13530053 -11013504 + AT_rich Low_complexity Low_complexity 1 29 0 3 688 291 85 0 0 chr3L 13530558 13530605 -11012952 + (T)n Simple_repeat Simple_repeat 1 47 0 3 688 41 21 0 0 chr3L 13530746 13530794 -11012763 + AT_rich Low_complexity Low_complexity 1 48 0 3 688 33 0 0 0 chr3L 13530920 13530953 -11012604 + AT_rich Low_complexity Low_complexity 1 33 0 3 688 233 228 0 0 chr3L 13530979 13531036 -11012521 + T-rich Low_complexity Low_complexity 1 57 0 3 688 248 236 0 0 chr3L 13531519 13531574 -11011983 + (TTG)n Simple_repeat Simple_repeat 1 55 0 3 688 245 250 0 15 chr3L 13532831 13532896 -11010661 + (CA)n Simple_repeat Simple_repeat 2 65 0 3 688 233 208 0 0 chr3L 13533379 13533427 -11010130 + (TG)n Simple_repeat Simple_repeat 2 49 0 3 688 215 189 0 36 chr3L 13535328 13535383 -11008174 + (GAGTG)n Simple_repeat Simple_repeat 2 54 0 3 688 238 214 0 18 chr3L 13535980 13536037 -11007520 + (TGGA)n Simple_repeat Simple_repeat 3 58 0 3 688 222 62 0 0 chr3L 13537873 13537905 -11005652 + (GGATG)n Simple_repeat Simple_repeat 5 36 0 3 688 249 167 0 0 chr3L 13542121 13542175 -11001382 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 688 227 211 0 19 chr3L 13544014 13544067 -10999490 + (CGA)n Simple_repeat Simple_repeat 3 54 0 3 688 186 103 0 0 chr3L 13544228 13544257 -10999300 + (CGGT)n Simple_repeat Simple_repeat 1 29 0 3 688 21 0 0 0 chr3L 13546372 13546393 -10997164 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 243 0 0 0 chr3L 13548145 13548172 -10995385 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 688 28 0 0 0 chr3L 13548652 13548680 -10994877 + AT_rich Low_complexity Low_complexity 1 28 0 3 688 23 33 0 0 chr3L 13548800 13548830 -10994727 + AT_rich Low_complexity Low_complexity 1 30 0 3 688 303 191 0 0 chr3L 13549221 13549289 -10994268 + (AGTTG)n Simple_repeat Simple_repeat 3 70 0 3 688 215 241 0 0 chr3L 13550151 13550205 -10993352 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 688 26 30 0 0 chr3L 13551226 13551259 -10992298 + AT_rich Low_complexity Low_complexity 1 33 0 3 688 30 0 0 0 chr3L 13551575 13551605 -10991952 + AT_rich Low_complexity Low_complexity 1 30 0 3 688 219 69 0 0 chr3L 13556386 13556415 -10987142 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 688 213 233 0 0 chr3L 13556415 13556458 -10987099 + GA-rich Low_complexity Low_complexity 2 44 0 3 688 201 74 0 0 chr3L 13556779 13556806 -10986751 + (AGCTG)n Simple_repeat Simple_repeat 1 27 0 3 688 312 70 0 0 chr3L 13558847 13558890 -10984667 + (GCTG)n Simple_repeat Simple_repeat 4 46 0 3 688 203 179 0 0 chr3L 13558953 13558992 -10984565 + A-rich Low_complexity Low_complexity 1 39 0 3 688 26 0 0 0 chr3L 13560838 13560864 -10982693 + AT_rich Low_complexity Low_complexity 1 26 0 3 688 21 36 0 0 chr3L 13561120 13561148 -10982409 + AT_rich Low_complexity Low_complexity 1 28 0 3 688 195 42 0 0 chr3L 13561321 13561345 -10982212 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 688 219 36 0 0 chr3L 13563871 13563899 -10979658 + (CA)n Simple_repeat Simple_repeat 1 28 0 3 688 231 61 0 0 chr3L 13564911 13564944 -10978613 + (CGAAA)n Simple_repeat Simple_repeat 2 34 0 3 688 47714 6 0 0 chr3L 13567953 13573174 -10970383 + DMRT1B LINE R1 1 5183 0 3 688 414 0 0 0 chr3L 13573174 13573220 -10970337 + (A)n Simple_repeat Simple_repeat 1 46 0 3 688 231 36 0 0 chr3L 13576727 13576755 -10966802 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 688 24 32 0 0 chr3L 13576964 13576995 -10966562 + AT_rich Low_complexity Low_complexity 1 31 0 3 688 21 0 0 0 chr3L 13578343 13578364 -10965193 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 216 0 0 0 chr3L 13580661 13580685 -10962872 + (A)n Simple_repeat Simple_repeat 1 24 0 3 688 237 274 20 0 chr3L 13580744 13580846 -10962711 + (CAG)n Simple_repeat Simple_repeat 2 105 0 3 688 189 0 0 0 chr3L 13584640 13584661 -10958896 + (CAGAC)n Simple_repeat Simple_repeat 5 25 0 3 688 203 260 0 0 chr3L 13584934 13584984 -10958573 + (CAGAGA)n Simple_repeat Simple_repeat 3 52 0 3 688 228 67 0 0 chr3L 13585735 13585765 -10957792 + (CTG)n Simple_repeat Simple_repeat 3 32 0 3 688 201 121 0 0 chr3L 13586655 13586688 -10956869 + (ATG)n Simple_repeat Simple_repeat 2 34 0 3 688 22 0 0 0 chr3L 13587679 13587701 -10955856 + AT_rich Low_complexity Low_complexity 1 22 0 3 688 285 100 0 0 chr3L 13588036 13588086 -10955471 + (CAG)n Simple_repeat Simple_repeat 3 52 0 3 688 303 93 0 0 chr3L 13588921 13588964 -10954593 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 688 232 235 0 0 chr3L 13594354 13594405 -10949152 + (TG)n Simple_repeat Simple_repeat 2 52 0 3 688 183 42 0 0 chr3L 13594544 13594568 -10948989 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 688 223 214 18 0 chr3L 13596540 13596596 -10946961 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 688 21 36 0 0 chr3L 13598860 13598888 -10944669 + AT_rich Low_complexity Low_complexity 1 28 0 3 688 25 65 0 0 chr3L 13600991 13601037 -10942520 + AT_rich Low_complexity Low_complexity 1 46 0 3 688 21 0 0 0 chr3L 13603226 13603247 -10940310 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 189 74 0 0 chr3L 13603348 13603375 -10940182 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 688 207 268 0 0 chr3L 13606985 13607026 -10936531 + (TGGG)n Simple_repeat Simple_repeat 2 42 0 3 688 243 0 0 0 chr3L 13607283 13607310 -10936247 + (TC)n Simple_repeat Simple_repeat 1 27 0 3 688 21 0 0 0 chr3L 13608073 13608094 -10935463 + AT_rich Low_complexity Low_complexity 1 21 0 3 688 22 0 0 0 chr3L 13610058 13610080 -10933477 + AT_rich Low_complexity Low_complexity 1 22 0 3 688 208 171 24 0 chr3L 13612116 13612157 -10931400 + (TG)n Simple_repeat Simple_repeat 1 42 0 3 688 22 35 0 0 chr3L 13612866 13612895 -10930662 + AT_rich Low_complexity Low_complexity 1 29 0 3 688 189 196 0 0 chr3L 13614854 13614905 -10928652 + (CCGAA)n Simple_repeat Simple_repeat 4 54 0 3 688 203 190 0 23 chr3L 13615154 13615197 -10928360 + GA-rich Low_complexity Low_complexity 4 45 0 3 688 228 35 0 0 chr3L 13616434 13616463 -10927094 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 688 240 35 0 0 chr3L 13618023 13618052 -10925505 + (CAAAC)n Simple_repeat Simple_repeat 1 29 0 3 688 211 329 0 14 chr3L 13618933 13619004 -10924553 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 688 336 24 0 0 chr3L 13619135 13619176 -10924381 + (CTG)n Simple_repeat Simple_repeat 3 43 0 3 688 186 43 0 0 chr3L 13619620 13619643 -10923914 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 688 204 40 0 0 chr3L 13619936 13619961 -10923596 + (CGAAA)n Simple_repeat Simple_repeat 1 25 0 3 688 543 56 0 0 chr3L 13622666 13622737 -10920820 + (GA)n Simple_repeat Simple_repeat 2 72 0 3 688 273 128 0 0 chr3L 13623107 13623154 -10920403 + (TCCA)n Simple_repeat Simple_repeat 4 50 0 3 688 203 194 0 0 chr3L 13624556 13624592 -10918965 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 688 198 174 0 0 chr3L 13627797 13627843 -10915714 + GA-rich Low_complexity Low_complexity 1 46 0 3 688 180 0 0 0 chr3L 13628405 13628425 -10915132 + (TTA)n Simple_repeat Simple_repeat 1 20 0 3 688 243 61 0 0 chr3L 13629229 13629262 -10914295 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 688 216 67 0 0 chr3L 13629298 13629328 -10914229 + (TG)n Simple_repeat Simple_repeat 1 30 0 3 688 252 0 0 0 chr3L 13631262 13631290 -10912267 + (T)n Simple_repeat Simple_repeat 1 28 0 3 689 279 0 0 0 chr3L 13635146 13635177 -10908380 + (CTG)n Simple_repeat Simple_repeat 2 32 0 3 689 207 286 0 16 chr3L 13637751 13637815 -10905742 + (CATATA)n Simple_repeat Simple_repeat 3 65 0 3 689 21 36 0 0 chr3L 13638910 13638938 -10904619 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 211 268 0 18 chr3L 13639300 13639357 -10904200 + (CACG)n Simple_repeat Simple_repeat 1 56 0 3 689 22 0 0 0 chr3L 13640764 13640786 -10902771 + AT_rich Low_complexity Low_complexity 1 22 0 3 689 300 120 0 0 chr3L 13641036 13641086 -10902471 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 3 689 201 182 0 0 chr3L 13643305 13643360 -10900197 + (CA)n Simple_repeat Simple_repeat 1 55 0 3 689 21 0 0 0 chr3L 13643390 13643411 -10900146 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 186 207 0 0 chr3L 13645198 13645256 -10898301 + (GGATG)n Simple_repeat Simple_repeat 5 62 0 3 689 206 241 0 0 chr3L 13646612 13646666 -10896891 + A-rich Low_complexity Low_complexity 1 54 0 3 689 192 40 0 0 chr3L 13649051 13649076 -10894481 + (TCTCTG)n Simple_repeat Simple_repeat 3 27 0 3 689 186 103 0 0 chr3L 13653552 13653581 -10889976 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 689 205 186 0 23 chr3L 13654827 13654871 -10888686 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 689 198 171 0 0 chr3L 13657930 13657971 -10885586 + CT-rich Low_complexity Low_complexity 4 44 0 3 689 212 175 0 0 chr3L 13659187 13659227 -10884330 + A-rich Low_complexity Low_complexity 1 40 0 3 689 337 51 51 0 chr3L 13659659 13659718 -10883839 + (GTTTG)n Simple_repeat Simple_repeat 2 63 0 3 689 211 125 25 0 chr3L 13661222 13661262 -10882295 + (CAA)n Simple_repeat Simple_repeat 1 41 0 3 689 221 150 0 0 chr3L 13664217 13664257 -10879300 + (CAG)n Simple_repeat Simple_repeat 1 40 0 3 689 228 149 0 0 chr3L 13664354 13664401 -10879156 + (CAATC)n Simple_repeat Simple_repeat 5 51 0 3 689 228 263 0 0 chr3L 13667107 13667164 -10876393 + A-rich Low_complexity Low_complexity 1 57 0 3 689 225 0 0 0 chr3L 13668822 13668847 -10874710 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 689 207 69 0 0 chr3L 13669988 13670017 -10873540 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 689 216 0 0 0 chr3L 13675293 13675317 -10868240 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 689 202 254 16 16 chr3L 13682759 13682823 -10860734 + (CAA)n Simple_repeat Simple_repeat 1 64 0 3 689 211 196 54 0 chr3L 13683716 13683772 -10859785 + (CCCGAA)n Simple_repeat Simple_repeat 1 59 0 3 689 47 0 0 0 chr3L 13687218 13687265 -10856292 + AT_rich Low_complexity Low_complexity 1 47 0 3 689 21 0 0 0 chr3L 13688395 13688416 -10855141 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 37 0 0 0 chr3L 13693466 13693503 -10850054 + AT_rich Low_complexity Low_complexity 1 37 0 3 689 240 111 0 0 chr3L 13693539 13693575 -10849982 + (CAG)n Simple_repeat Simple_repeat 3 38 0 3 689 189 0 0 0 chr3L 13696216 13696237 -10847320 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 689 22 0 0 0 chr3L 13697623 13697645 -10845912 + AT_rich Low_complexity Low_complexity 1 22 0 3 689 29 0 0 0 chr3L 13699499 13699528 -10844029 + AT_rich Low_complexity Low_complexity 1 29 0 3 689 276 149 0 0 chr3L 13700654 13700701 -10842856 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 689 22 35 0 0 chr3L 13700936 13700965 -10842592 + AT_rich Low_complexity Low_complexity 1 29 0 3 689 186 43 0 0 chr3L 13700978 13701001 -10842556 + (CTG)n Simple_repeat Simple_repeat 1 23 0 3 689 31 58 0 0 chr3L 13702652 13702704 -10840853 + AT_rich Low_complexity Low_complexity 1 52 0 3 689 213 211 0 0 chr3L 13703690 13703747 -10839810 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 689 21 0 0 0 chr3L 13704434 13704455 -10839102 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 237 241 0 0 chr3L 13704585 13704639 -10838918 + (CA)n Simple_repeat Simple_repeat 2 55 0 3 689 29 47 0 0 chr3L 13704989 13705032 -10838525 + AT_rich Low_complexity Low_complexity 1 43 0 3 689 23 0 0 0 chr3L 13705519 13705542 -10838015 + AT_rich Low_complexity Low_complexity 1 23 0 3 689 21 0 0 0 chr3L 13705698 13705719 -10837838 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 195 69 0 0 chr3L 13710512 13710541 -10833016 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 689 33 43 0 0 chr3L 13716740 13716787 -10826770 + AT_rich Low_complexity Low_complexity 1 47 0 3 689 28 0 0 0 chr3L 13716817 13716845 -10826712 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 204 163 0 0 chr3L 13720655 13720698 -10822859 + (CAGC)n Simple_repeat Simple_repeat 1 43 0 3 689 30 83 0 0 chr3L 13725231 13725303 -10818254 + AT_rich Low_complexity Low_complexity 1 72 0 3 689 21 0 0 0 chr3L 13725912 13725933 -10817624 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 208 239 0 0 chr3L 13730061 13730107 -10813450 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 689 288 70 0 0 chr3L 13730599 13730642 -10812915 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 689 26 0 0 0 chr3L 13736393 13736419 -10807138 + AT_rich Low_complexity Low_complexity 1 26 0 3 689 21 0 0 0 chr3L 13736932 13736953 -10806604 + AT_rich Low_complexity Low_complexity 1 21 0 3 689 21 57 0 0 chr3L 13738696 13738731 -10804826 + AT_rich Low_complexity Low_complexity 1 35 0 3 689 202 246 15 15 chr3L 13745395 13745461 -10798096 + A-rich Low_complexity Low_complexity 2 67 0 3 689 23 86 0 0 chr3L 13747764 13747822 -10795735 + AT_rich Low_complexity Low_complexity 1 58 0 3 689 22 0 0 0 chr3L 13747980 13748002 -10795555 + AT_rich Low_complexity Low_complexity 1 22 0 3 689 225 65 0 0 chr3L 13752595 13752626 -10790931 + (CGAA)n Simple_repeat Simple_repeat 2 32 0 3 689 225 0 0 0 chr3L 13755879 13755904 -10787653 + (CAT)n Simple_repeat Simple_repeat 1 25 0 3 689 23 33 0 0 chr3L 13756931 13756961 -10786596 + AT_rich Low_complexity Low_complexity 1 30 0 3 689 215 274 0 0 chr3L 13757721 13757794 -10785763 + (CA)n Simple_repeat Simple_repeat 1 73 0 3 689 207 69 0 0 chr3L 13759659 13759688 -10783869 + (ACCG)n Simple_repeat Simple_repeat 2 30 0 3 689 21 36 0 0 chr3L 13761079 13761107 -10782450 + AT_rich Low_complexity Low_complexity 1 28 0 3 689 22 0 0 0 chr3L 13761974 13761996 -10781561 + AT_rich Low_complexity Low_complexity 1 22 0 3 690 23 78 0 0 chr3L 13769617 13769668 -10773889 + AT_rich Low_complexity Low_complexity 1 51 0 3 690 212 178 22 0 chr3L 13771678 13771723 -10771834 + (CAA)n Simple_repeat Simple_repeat 2 47 0 3 690 31 0 0 0 chr3L 13771929 13771960 -10771597 + AT_rich Low_complexity Low_complexity 1 31 0 3 690 23 68 0 0 chr3L 13772047 13772091 -10771466 + AT_rich Low_complexity Low_complexity 1 44 0 3 690 22 35 0 0 chr3L 13773019 13773048 -10770509 + AT_rich Low_complexity Low_complexity 1 29 0 3 690 203 244 0 0 chr3L 13773641 13773686 -10769871 + (TTCGG)n Simple_repeat Simple_repeat 1 45 0 3 690 207 0 0 0 chr3L 13776857 13776880 -10766677 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 690 36 40 0 0 chr3L 13780279 13780329 -10763228 + AT_rich Low_complexity Low_complexity 1 50 0 3 690 23 0 0 0 chr3L 13786597 13786620 -10756937 + AT_rich Low_complexity Low_complexity 1 23 0 3 690 215 61 0 29 chr3L 13786840 13786874 -10756683 + (TTG)n Simple_repeat Simple_repeat 2 34 0 3 690 26 64 0 0 chr3L 13789522 13789569 -10753988 + AT_rich Low_complexity Low_complexity 1 47 0 3 690 24 32 0 0 chr3L 13791061 13791092 -10752465 + AT_rich Low_complexity Low_complexity 1 31 0 3 690 33 56 0 0 chr3L 13791259 13791313 -10752244 + AT_rich Low_complexity Low_complexity 1 54 0 3 690 23 0 0 0 chr3L 13791451 13791474 -10752083 + AT_rich Low_complexity Low_complexity 1 23 0 3 690 25 31 0 0 chr3L 13793399 13793431 -10750126 + AT_rich Low_complexity Low_complexity 1 32 0 3 690 25 51 0 0 chr3L 13793459 13793498 -10750059 + AT_rich Low_complexity Low_complexity 1 39 0 3 690 276 154 0 0 chr3L 13793940 13793992 -10749565 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 690 200 122 0 24 chr3L 13795332 13795374 -10748183 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 690 183 204 0 0 chr3L 13796372 13796416 -10747141 + (CGA)n Simple_repeat Simple_repeat 2 45 0 3 690 200 140 23 23 chr3L 13797052 13797096 -10746461 + (TGGG)n Simple_repeat Simple_repeat 2 45 0 3 690 3861 5 0 2 chr3L 13797700 13798129 -10745428 + ROO_LTR LTR Pao 1 428 0 3 690 55176 1 1 0 chr3L 13798129 13804334 -10739223 + ROO_I LTR Pao 1 6214 -2042 3 690 3907 2 0 0 chr3L 13804334 13804762 -10738795 - ROO_LTR LTR Pao 0 428 1 3 690 73354 0 0 1 chr3L 13804762 13813023 -10730534 - ROO_I LTR Pao 0 8256 1 3 690 3885 2 0 2 chr3L 13813023 13813452 -10730105 - ROO_LTR LTR Pao 0 428 1 3 690 18140 1 1 0 chr3L 13813452 13815498 -10728059 + ROO_I LTR Pao 6210 8256 0 3 690 3831 5 0 5 chr3L 13815498 13815928 -10727629 + ROO_LTR LTR Pao 1 428 0 3 690 192 40 0 0 chr3L 13817447 13817472 -10726085 + (TC)n Simple_repeat Simple_repeat 1 25 0 3 690 192 40 0 0 chr3L 13819553 13819578 -10723979 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 690 252 200 0 0 chr3L 13820062 13820142 -10723415 + (TGG)n Simple_repeat Simple_repeat 2 81 0 3 690 22 0 0 0 chr3L 13821774 13821796 -10721761 + AT_rich Low_complexity Low_complexity 1 22 0 3 690 228 35 0 0 chr3L 13822494 13822523 -10721034 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 690 444 125 44 33 chr3L 13823729 13823820 -10719737 - Transib-N1_DM DNA Transib -402 112 21 3 690 189 100 19 39 chr3L 13824301 13824353 -10719204 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 3 690 683 228 97 35 chr3L 13825042 13825269 -10718288 - DNAREP1_DM LINE Penelope -8 586 346 3 690 30 27 0 0 chr3L 13827922 13827959 -10715598 + AT_rich Low_complexity Low_complexity 1 37 0 3 690 39 74 0 0 chr3L 13831173 13831254 -10712303 + AT_rich Low_complexity Low_complexity 1 81 0 3 690 30 0 0 0 chr3L 13832014 13832044 -10711513 + AT_rich Low_complexity Low_complexity 1 30 0 3 690 24 53 0 0 chr3L 13838277 13838315 -10705242 + AT_rich Low_complexity Low_complexity 1 38 0 3 690 26 0 0 0 chr3L 13841137 13841163 -10702394 + AT_rich Low_complexity Low_complexity 1 26 0 3 690 22 0 0 0 chr3L 13842119 13842141 -10701416 + AT_rich Low_complexity Low_complexity 1 22 0 3 690 29 0 0 0 chr3L 13853084 13853113 -10690444 + AT_rich Low_complexity Low_complexity 1 29 0 3 690 31 44 0 0 chr3L 13855270 13855315 -10688242 + AT_rich Low_complexity Low_complexity 1 45 0 3 690 226 188 42 0 chr3L 13857802 13857850 -10685707 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 3 690 22 70 0 0 chr3L 13859789 13859832 -10683725 + AT_rich Low_complexity Low_complexity 1 43 0 3 690 180 125 0 0 chr3L 13860526 13860558 -10682999 + (T)n Simple_repeat Simple_repeat 1 32 0 3 690 30 0 0 0 chr3L 13860624 13860654 -10682903 + AT_rich Low_complexity Low_complexity 1 30 0 3 690 22 99 0 0 chr3L 13860744 13860815 -10682742 + AT_rich Low_complexity Low_complexity 1 71 0 3 690 222 91 0 0 chr3L 13862336 13862369 -10681188 + (TTTTC)n Simple_repeat Simple_repeat 3 35 0 3 690 209 265 29 0 chr3L 13862822 13862890 -10680667 + (ATTG)n Simple_repeat Simple_repeat 4 73 0 3 690 24 53 0 0 chr3L 13863752 13863790 -10679767 + AT_rich Low_complexity Low_complexity 1 38 0 3 690 185 211 0 17 chr3L 13863884 13863942 -10679615 + (TG)n Simple_repeat Simple_repeat 2 58 0 3 690 189 250 0 0 chr3L 13865115 13865207 -10678350 + (ATGGTG)n Simple_repeat Simple_repeat 4 95 0 3 690 264 261 0 0 chr3L 13865286 13865351 -10678206 + (CTG)n Simple_repeat Simple_repeat 1 65 0 3 690 294 260 8 31 chr3L 13865464 13865591 -10677966 + (TTG)n Simple_repeat Simple_repeat 1 124 0 3 690 327 104 0 0 chr3L 13867635 13867683 -10675874 + (AACTG)n Simple_repeat Simple_repeat 5 52 0 3 690 240 291 14 36 chr3L 13868739 13868878 -10674679 + T-rich Low_complexity Low_complexity 3 138 0 3 690 219 140 0 0 chr3L 13869190 13869240 -10674317 + (GA)n Simple_repeat Simple_repeat 2 51 0 3 690 240 219 15 15 chr3L 13870590 13870655 -10672902 + (TG)n Simple_repeat Simple_repeat 2 66 0 3 690 28 0 0 0 chr3L 13871570 13871598 -10671959 + AT_rich Low_complexity Low_complexity 1 28 0 3 690 260 150 0 59 chr3L 13871965 13872050 -10671507 + ROO_I LTR Pao 652 731 -7525 3 690 208 217 0 0 chr3L 13874841 13874887 -10668670 + (CAGC)n Simple_repeat Simple_repeat 4 49 0 3 690 24 0 0 0 chr3L 13876288 13876312 -10667245 + AT_rich Low_complexity Low_complexity 1 24 0 3 690 180 111 0 0 chr3L 13877268 13877295 -10666262 + (TTG)n Simple_repeat Simple_repeat 3 29 0 3 690 335 83 0 16 chr3L 13877508 13877569 -10665988 + (TA)n Simple_repeat Simple_repeat 1 60 0 3 690 195 100 0 0 chr3L 13877907 13877937 -10665620 + (CGGAA)n Simple_repeat Simple_repeat 3 32 0 3 690 224 229 0 41 chr3L 13878056 13878129 -10665428 + GA-rich Low_complexity Low_complexity 2 71 0 3 690 22 0 0 0 chr3L 13880204 13880226 -10663331 + AT_rich Low_complexity Low_complexity 1 22 0 3 690 207 100 0 0 chr3L 13880380 13880410 -10663147 + (CCG)n Simple_repeat Simple_repeat 2 31 0 3 690 182 37 37 0 chr3L 13880644 13880671 -10662886 + (GA)n Simple_repeat Simple_repeat 2 29 0 3 690 294 106 0 0 chr3L 13881637 13881684 -10661873 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 690 21 0 0 0 chr3L 13882293 13882314 -10661243 + AT_rich Low_complexity Low_complexity 1 21 0 3 690 25 31 0 0 chr3L 13882459 13882491 -10661066 + AT_rich Low_complexity Low_complexity 1 32 0 3 690 228 188 0 0 chr3L 13883041 13883105 -10660452 + (TG)n Simple_repeat Simple_repeat 1 64 0 3 690 21 57 0 0 chr3L 13884271 13884306 -10659251 + AT_rich Low_complexity Low_complexity 1 35 0 3 690 23 33 0 0 chr3L 13886234 13886264 -10657293 + AT_rich Low_complexity Low_complexity 1 30 0 3 690 195 100 0 0 chr3L 13886736 13886766 -10656791 + (CA)n Simple_repeat Simple_repeat 2 31 0 3 690 299 140 0 0 chr3L 13889488 13889538 -10654019 + DNAREP1_DM LINE Penelope 1 50 -544 3 690 284 224 30 114 chr3L 13889547 13889678 -10653879 + DNAREP1_DM LINE Penelope 367 486 -108 3 690 21 0 0 0 chr3L 13890066 13890087 -10653470 + AT_rich Low_complexity Low_complexity 1 21 0 3 690 25 51 0 0 chr3L 13890631 13890670 -10652887 + AT_rich Low_complexity Low_complexity 1 39 0 3 690 26 0 0 0 chr3L 13890786 13890812 -10652745 + AT_rich Low_complexity Low_complexity 1 26 0 3 691 25 0 0 0 chr3L 13895151 13895176 -10648381 + AT_rich Low_complexity Low_complexity 1 25 0 3 691 21 0 0 0 chr3L 13895358 13895379 -10648178 + AT_rich Low_complexity Low_complexity 1 21 0 3 691 23 54 0 0 chr3L 13896513 13896550 -10647007 + AT_rich Low_complexity Low_complexity 1 37 0 3 691 27 0 0 0 chr3L 13896622 13896649 -10646908 + AT_rich Low_complexity Low_complexity 1 27 0 3 691 201 39 0 0 chr3L 13897680 13897706 -10645851 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 691 28 79 0 0 chr3L 13898081 13898144 -10645413 + AT_rich Low_complexity Low_complexity 1 63 0 3 691 29 47 0 0 chr3L 13898795 13898838 -10644719 + AT_rich Low_complexity Low_complexity 1 43 0 3 691 26 74 0 0 chr3L 13903320 13903374 -10640183 + AT_rich Low_complexity Low_complexity 1 54 0 3 691 24 53 0 0 chr3L 13904985 13905023 -10638534 + AT_rich Low_complexity Low_complexity 1 38 0 3 691 189 0 0 0 chr3L 13905229 13905250 -10638307 + (TCCA)n Simple_repeat Simple_repeat 2 22 0 3 691 208 250 19 0 chr3L 13905983 13906035 -10637522 + (CATA)n Simple_repeat Simple_repeat 4 56 0 3 691 22 35 0 0 chr3L 13906047 13906076 -10637481 + AT_rich Low_complexity Low_complexity 1 29 0 3 691 26 64 0 0 chr3L 13906928 13906975 -10636582 + AT_rich Low_complexity Low_complexity 1 47 0 3 691 249 33 0 0 chr3L 13907385 13907415 -10636142 + (CTG)n Simple_repeat Simple_repeat 1 30 0 3 691 277 205 0 49 chr3L 13907893 13907975 -10635582 + A-rich Low_complexity Low_complexity 1 78 0 3 691 26 64 0 0 chr3L 13908520 13908567 -10634990 + AT_rich Low_complexity Low_complexity 1 47 0 3 691 25 0 0 0 chr3L 13909395 13909420 -10634137 + AT_rich Low_complexity Low_complexity 1 25 0 3 691 224 209 0 0 chr3L 13909737 13909780 -10633777 + (TATG)n Simple_repeat Simple_repeat 1 43 0 3 691 260 113 38 0 chr3L 13910860 13910913 -10632644 + (ACTG)n Simple_repeat Simple_repeat 1 55 0 3 691 35 24 0 0 chr3L 13914531 13914573 -10628984 + AT_rich Low_complexity Low_complexity 1 42 0 3 691 21 0 0 0 chr3L 13917599 13917620 -10625937 + AT_rich Low_complexity Low_complexity 1 21 0 3 691 207 88 0 0 chr3L 13918502 13918536 -10625021 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 691 29 94 0 0 chr3L 13922154 13922239 -10621318 + AT_rich Low_complexity Low_complexity 1 85 0 3 691 21 0 0 0 chr3L 13924792 13924813 -10618744 + AT_rich Low_complexity Low_complexity 1 21 0 3 691 34 0 0 0 chr3L 13928611 13928645 -10614912 + AT_rich Low_complexity Low_complexity 1 34 0 3 691 24 32 0 0 chr3L 13928752 13928783 -10614774 + AT_rich Low_complexity Low_complexity 1 31 0 3 691 27 29 0 0 chr3L 13928840 13928874 -10614683 + AT_rich Low_complexity Low_complexity 1 34 0 3 691 206 81 26 26 chr3L 13932882 13932920 -10610637 + (TAAAA)n Simple_repeat Simple_repeat 2 39 0 3 691 244 276 0 0 chr3L 13934191 13934249 -10609308 + (CAG)n Simple_repeat Simple_repeat 2 59 0 3 691 204 40 0 0 chr3L 13935800 13935825 -10607732 + (CA)n Simple_repeat Simple_repeat 1 25 0 3 691 25 0 0 0 chr3L 13938255 13938280 -10605277 + AT_rich Low_complexity Low_complexity 1 25 0 3 691 24 67 0 0 chr3L 13938665 13938710 -10604847 + AT_rich Low_complexity Low_complexity 1 45 0 3 691 207 0 0 0 chr3L 13939767 13939790 -10603767 + (TGGA)n Simple_repeat Simple_repeat 1 23 0 3 691 22 0 0 0 chr3L 13940698 13940720 -10602837 + AT_rich Low_complexity Low_complexity 1 22 0 3 691 273 119 0 0 chr3L 13942690 13942732 -10600825 + (GA)n Simple_repeat Simple_repeat 1 42 0 3 691 22 0 0 0 chr3L 13945974 13945996 -10597561 + AT_rich Low_complexity Low_complexity 1 22 0 3 691 198 43 62 42 chr3L 13948682 13948730 -10594827 + (TTAAA)n Simple_repeat Simple_repeat 3 51 0 3 691 254 106 0 21 chr3L 13950140 13950188 -10593369 + (TTTTG)n Simple_repeat Simple_repeat 4 50 0 3 691 26 0 0 0 chr3L 13950377 13950403 -10593154 + AT_rich Low_complexity Low_complexity 1 26 0 3 691 363 44 0 0 chr3L 13950739 13950784 -10592773 + (TGG)n Simple_repeat Simple_repeat 3 47 0 3 691 39 68 0 0 chr3L 13953516 13953590 -10589967 + AT_rich Low_complexity Low_complexity 1 74 0 3 691 27 0 0 0 chr3L 13955020 13955047 -10588510 + AT_rich Low_complexity Low_complexity 1 27 0 3 691 201 143 0 0 chr3L 13955512 13955547 -10588010 + (CAAAAA)n Simple_repeat Simple_repeat 1 35 0 3 691 22 0 0 0 chr3L 13957114 13957136 -10586421 + AT_rich Low_complexity Low_complexity 1 22 0 3 691 27 0 0 0 chr3L 13958018 13958045 -10585512 + AT_rich Low_complexity Low_complexity 1 27 0 3 691 234 128 0 0 chr3L 13958523 13958562 -10584995 + (CTG)n Simple_repeat Simple_repeat 1 39 0 3 691 21 36 0 0 chr3L 13961712 13961740 -10581817 + AT_rich Low_complexity Low_complexity 1 28 0 3 691 180 77 0 0 chr3L 13966409 13966435 -10577122 + (TTG)n Simple_repeat Simple_repeat 3 28 0 3 691 21 57 0 0 chr3L 13968588 13968623 -10574934 + AT_rich Low_complexity Low_complexity 1 35 0 3 691 21 36 0 0 chr3L 13973111 13973139 -10570418 + AT_rich Low_complexity Low_complexity 1 28 0 3 691 249 139 0 0 chr3L 13973586 13973629 -10569928 + (TG)n Simple_repeat Simple_repeat 2 44 0 3 691 222 91 0 0 chr3L 13974061 13974094 -10569463 + (TG)n Simple_repeat Simple_repeat 2 34 0 3 691 333 62 0 0 chr3L 13975252 13975300 -10568257 + (CCA)n Simple_repeat Simple_repeat 1 48 0 3 691 201 238 0 0 chr3L 13975575 13975617 -10567940 + (CCA)n Simple_repeat Simple_repeat 2 43 0 3 691 22 0 0 0 chr3L 13976132 13976154 -10567403 + AT_rich Low_complexity Low_complexity 1 22 0 3 691 222 62 0 0 chr3L 13978899 13978931 -10564626 + (CTG)n Simple_repeat Simple_repeat 1 32 0 3 691 24 0 0 0 chr3L 13980242 13980266 -10563291 + AT_rich Low_complexity Low_complexity 1 24 0 3 691 30 59 0 0 chr3L 13982694 13982745 -10560812 + AT_rich Low_complexity Low_complexity 1 51 0 3 691 24 53 0 0 chr3L 13984250 13984288 -10559269 + AT_rich Low_complexity Low_complexity 1 38 0 3 691 217 172 77 15 chr3L 13985896 13985961 -10557596 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 3 691 25 31 0 0 chr3L 13986899 13986931 -10556626 + AT_rich Low_complexity Low_complexity 1 32 0 3 691 28 71 0 0 chr3L 13989913 13989969 -10553588 + AT_rich Low_complexity Low_complexity 1 56 0 3 691 24 0 0 0 chr3L 13990083 13990107 -10553450 + AT_rich Low_complexity Low_complexity 1 24 0 3 691 23 33 0 0 chr3L 13990176 13990206 -10553351 + AT_rich Low_complexity Low_complexity 1 30 0 3 691 180 0 0 0 chr3L 13990740 13990760 -10552797 + (GGA)n Simple_repeat Simple_repeat 2 21 0 3 691 25 0 0 0 chr3L 13992478 13992503 -10551054 + AT_rich Low_complexity Low_complexity 1 25 0 3 691 23 33 0 0 chr3L 13994923 13994953 -10548604 + AT_rich Low_complexity Low_complexity 1 30 0 3 691 21 57 0 0 chr3L 13996388 13996423 -10547134 + AT_rich Low_complexity Low_complexity 1 35 0 3 691 189 0 0 0 chr3L 13998436 13998457 -10545100 + (TTG)n Simple_repeat Simple_repeat 3 23 0 3 691 225 205 0 67 chr3L 14001783 14001872 -10541685 + ROO_I LTR Pao 641 723 -7533 3 691 215 211 0 0 chr3L 14005726 14005764 -10537793 + (CAG)n Simple_repeat Simple_repeat 3 40 0 3 691 200 243 14 54 chr3L 14006072 14006146 -10537411 + (CAG)n Simple_repeat Simple_repeat 3 73 0 3 691 216 67 0 0 chr3L 14006267 14006297 -10537260 + (CAG)n Simple_repeat Simple_repeat 3 32 0 3 691 278 338 12 6 chr3L 14006381 14006542 -10537015 + (CAG)n Simple_repeat Simple_repeat 2 163 0 3 691 251 284 0 33 chr3L 14008929 14009020 -10534537 + GA-rich Low_complexity Low_complexity 5 92 0 3 691 206 259 0 27 chr3L 14009612 14009723 -10533834 + GA-rich Low_complexity Low_complexity 4 111 0 3 691 180 179 0 0 chr3L 14016145 14016184 -10527373 + (CTG)n Simple_repeat Simple_repeat 3 41 0 3 691 210 233 0 0 chr3L 14016327 14016387 -10527170 + (TTG)n Simple_repeat Simple_repeat 1 60 0 3 691 226 135 61 98 chr3L 14017336 14017418 -10526139 - ROO_I LTR Pao -7523 733 655 3 691 264 259 0 0 chr3L 14017649 14017730 -10525827 - ROO_I LTR Pao -7533 723 643 3 691 244 177 0 112 chr3L 14017684 14017773 -10525784 - TART_B1 LINE telomeric -10461 193 115 3 691 416 150 0 29 chr3L 14017882 14017985 -10525572 - ROO_I LTR Pao -7511 745 646 3 691 282 253 11 11 chr3L 14018026 14018114 -10525443 + (CTG)n Simple_repeat Simple_repeat 3 90 0 3 691 250 234 0 72 chr3L 14018359 14018442 -10525115 - BS LINE Jockey -3003 2123 2047 3 691 226 232 110 0 chr3L 14018517 14018599 -10524958 - BS LINE Jockey -3017 2109 2019 3 691 213 299 0 0 chr3L 14018628 14018695 -10524862 + (CTG)n Simple_repeat Simple_repeat 3 69 0 3 691 235 168 0 112 chr3L 14018776 14018883 -10524674 - ROO_I LTR Pao -7518 738 644 3 691 236 209 9 37 chr3L 14019031 14019140 -10524417 + (CTG)n Simple_repeat Simple_repeat 2 107 0 3 691 296 289 9 9 chr3L 14019369 14019484 -10524073 + (CTG)n Simple_repeat Simple_repeat 3 117 0 3 691 249 226 0 81 chr3L 14019759 14019870 -10523687 - ROO_I LTR Pao -7514 742 641 3 691 364 181 0 0 chr3L 14020811 14020916 -10522641 - ROO_I LTR Pao -7513 743 639 3 691 180 200 0 0 chr3L 14021775 14021820 -10521737 + (CA)n Simple_repeat Simple_repeat 2 46 0 3 691 30 0 0 0 chr3L 14023785 14023815 -10519742 + AT_rich Low_complexity Low_complexity 1 30 0 3 692 25 31 0 0 chr3L 14025076 14025108 -10518449 + AT_rich Low_complexity Low_complexity 1 32 0 3 692 24 32 0 0 chr3L 14029957 14029988 -10513569 + AT_rich Low_complexity Low_complexity 1 31 0 3 692 201 167 0 0 chr3L 14031487 14031523 -10512034 + GA-rich Low_complexity Low_complexity 2 37 0 3 692 200 111 28 0 chr3L 14034655 14034691 -10508866 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 3 692 22 0 0 0 chr3L 14034957 14034979 -10508578 + AT_rich Low_complexity Low_complexity 1 22 0 3 692 25 65 0 0 chr3L 14038859 14038905 -10504652 + AT_rich Low_complexity Low_complexity 1 46 0 3 692 248 274 0 0 chr3L 14046551 14046635 -10496922 + (TG)n Simple_repeat Simple_repeat 1 84 0 3 692 225 152 0 0 chr3L 14046637 14046683 -10496874 + ROO_I LTR Pao 685 730 -7526 3 692 253 219 0 0 chr3L 14046766 14046830 -10496727 + A-rich Low_complexity Low_complexity 1 64 0 3 692 210 91 0 0 chr3L 14047085 14047118 -10496439 + (GGA)n Simple_repeat Simple_repeat 3 35 0 3 692 23 54 0 0 chr3L 14047541 14047578 -10495979 + AT_rich Low_complexity Low_complexity 1 37 0 3 692 22 0 0 0 chr3L 14047897 14047919 -10495638 + AT_rich Low_complexity Low_complexity 1 22 0 3 692 192 40 0 0 chr3L 14049108 14049133 -10494424 + (GGATG)n Simple_repeat Simple_repeat 5 29 0 3 692 216 0 0 0 chr3L 14049234 14049258 -10494299 + (CAGT)n Simple_repeat Simple_repeat 1 24 0 3 692 215 280 13 13 chr3L 14052641 14052717 -10490840 + (TA)n Simple_repeat Simple_repeat 1 76 0 3 692 23 54 0 0 chr3L 14053488 14053525 -10490032 + AT_rich Low_complexity Low_complexity 1 37 0 3 692 23 33 0 0 chr3L 14054816 14054846 -10488711 + AT_rich Low_complexity Low_complexity 1 30 0 3 692 231 190 0 0 chr3L 14055983 14056041 -10487516 + (TCCA)n Simple_repeat Simple_repeat 3 60 0 3 692 207 100 0 0 chr3L 14056159 14056189 -10487368 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 3 692 202 189 0 0 chr3L 14057281 14057318 -10486239 + (CCCGAA)n Simple_repeat Simple_repeat 3 39 0 3 692 203 169 16 33 chr3L 14057404 14057465 -10486092 + A-rich Low_complexity Low_complexity 4 63 0 3 692 22 0 0 0 chr3L 14058330 14058352 -10485205 + AT_rich Low_complexity Low_complexity 1 22 0 3 692 180 182 0 0 chr3L 14060110 14060154 -10483403 + (CCA)n Simple_repeat Simple_repeat 2 45 0 3 692 21 0 0 0 chr3L 14063762 14063783 -10479774 + AT_rich Low_complexity Low_complexity 1 21 0 3 692 26 82 0 0 chr3L 14064097 14064158 -10479399 + AT_rich Low_complexity Low_complexity 1 61 0 3 692 8529 0 0 0 chr3L 14064158 14065088 -10478469 - PLACW_DM DNA P 0 930 1 3 692 22 0 0 0 chr3L 14069253 14069275 -10474282 + AT_rich Low_complexity Low_complexity 1 22 0 3 692 251 187 40 0 chr3L 14070058 14070133 -10473424 + (TATCG)n Simple_repeat Simple_repeat 1 78 0 3 692 22 0 0 0 chr3L 14070247 14070269 -10473288 + GC_rich Low_complexity Low_complexity 1 22 0 3 692 24 32 0 0 chr3L 14071412 14071443 -10472114 + AT_rich Low_complexity Low_complexity 1 31 0 3 692 30 27 0 0 chr3L 14072265 14072302 -10471255 + AT_rich Low_complexity Low_complexity 1 37 0 3 692 26 0 0 0 chr3L 14076121 14076147 -10467410 + AT_rich Low_complexity Low_complexity 1 26 0 3 692 22 103 0 0 chr3L 14076976 14077054 -10466503 + AT_rich Low_complexity Low_complexity 1 78 0 3 692 213 216 0 0 chr3L 14081871 14081908 -10461649 + (TATG)n Simple_repeat Simple_repeat 1 37 0 3 692 28 29 0 0 chr3L 14082739 14082774 -10460783 + AT_rich Low_complexity Low_complexity 1 35 0 3 692 26 30 0 0 chr3L 14083748 14083781 -10459776 + AT_rich Low_complexity Low_complexity 1 33 0 3 692 21 57 0 0 chr3L 14084564 14084599 -10458958 + AT_rich Low_complexity Low_complexity 1 35 0 3 692 33 66 0 0 chr3L 14086722 14086783 -10456774 + AT_rich Low_complexity Low_complexity 1 61 0 3 692 180 0 0 0 chr3L 14087733 14087753 -10455804 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 692 217 200 0 0 chr3L 14089890 14089925 -10453632 + (TCG)n Simple_repeat Simple_repeat 2 36 0 3 692 21 0 0 0 chr3L 14091625 14091646 -10451911 + AT_rich Low_complexity Low_complexity 1 21 0 3 692 21 0 0 0 chr3L 14094018 14094039 -10449518 + AT_rich Low_complexity Low_complexity 1 21 0 3 692 210 71 0 0 chr3L 14094252 14094280 -10449277 + (AAATG)n Simple_repeat Simple_repeat 3 30 0 3 692 28 0 0 0 chr3L 14095182 14095210 -10448347 + AT_rich Low_complexity Low_complexity 1 28 0 3 692 40 37 0 0 chr3L 14096927 14096981 -10446576 + AT_rich Low_complexity Low_complexity 1 54 0 3 692 204 97 0 0 chr3L 14097874 14097905 -10445652 + (CCA)n Simple_repeat Simple_repeat 2 32 0 3 692 21 0 0 0 chr3L 14098739 14098760 -10444797 + AT_rich Low_complexity Low_complexity 1 21 0 3 692 22 0 0 0 chr3L 14099454 14099476 -10444081 + AT_rich Low_complexity Low_complexity 1 22 0 3 692 216 0 0 0 chr3L 14101442 14101466 -10442091 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 692 32 0 0 0 chr3L 14102764 14102796 -10440761 + AT_rich Low_complexity Low_complexity 1 32 0 3 692 180 0 0 0 chr3L 14103101 14103121 -10440436 + (TG)n Simple_repeat Simple_repeat 1 20 0 3 692 28 29 0 0 chr3L 14105565 14105600 -10437957 + AT_rich Low_complexity Low_complexity 1 35 0 3 692 376 87 0 42 chr3L 14106441 14106513 -10437044 + (CTG)n Simple_repeat Simple_repeat 1 69 0 3 692 29 28 0 0 chr3L 14106739 14106775 -10436782 + AT_rich Low_complexity Low_complexity 1 36 0 3 692 25 0 0 0 chr3L 14111504 14111529 -10432028 + AT_rich Low_complexity Low_complexity 1 25 0 3 692 249 33 0 0 chr3L 14115128 14115158 -10428399 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 3 692 23 78 0 0 chr3L 14117334 14117385 -10426172 + AT_rich Low_complexity Low_complexity 1 51 0 3 692 288 311 12 6 chr3L 14118885 14119053 -10424504 + (CTG)n Simple_repeat Simple_repeat 3 171 0 3 692 25 31 0 0 chr3L 14120995 14121027 -10422530 + AT_rich Low_complexity Low_complexity 1 32 0 3 692 21 95 0 0 chr3L 14129941 14130004 -10413553 + AT_rich Low_complexity Low_complexity 1 63 0 3 692 189 0 0 0 chr3L 14130397 14130418 -10413139 + (ATG)n Simple_repeat Simple_repeat 3 23 0 3 692 21 0 0 0 chr3L 14132188 14132209 -10411348 + AT_rich Low_complexity Low_complexity 1 21 0 3 692 25 0 0 0 chr3L 14136217 14136242 -10407315 + AT_rich Low_complexity Low_complexity 1 25 0 3 692 24 32 0 0 chr3L 14136312 14136343 -10407214 + AT_rich Low_complexity Low_complexity 1 31 0 3 692 29 28 0 0 chr3L 14137201 14137237 -10406320 + AT_rich Low_complexity Low_complexity 1 36 0 3 692 205 184 0 0 chr3L 14137547 14137585 -10405972 + (TTG)n Simple_repeat Simple_repeat 1 38 0 3 692 24 0 0 0 chr3L 14141444 14141468 -10402089 + AT_rich Low_complexity Low_complexity 1 24 0 3 692 22 80 0 0 chr3L 14141605 14141655 -10401902 + AT_rich Low_complexity Low_complexity 1 50 0 3 692 246 271 0 0 chr3L 14143510 14143580 -10399977 + CT-rich Low_complexity Low_complexity 3 72 0 3 692 38 22 0 0 chr3L 14144046 14144091 -10399466 + AT_rich Low_complexity Low_complexity 1 45 0 3 692 186 43 0 0 chr3L 14145061 14145084 -10398473 + (CATTT)n Simple_repeat Simple_repeat 2 24 0 3 692 21 82 0 0 chr3L 14145964 14146013 -10397544 + AT_rich Low_complexity Low_complexity 1 49 0 3 692 23 78 0 0 chr3L 14147718 14147769 -10395788 + AT_rich Low_complexity Low_complexity 1 51 0 3 692 22 56 0 0 chr3L 14148883 14148919 -10394638 + AT_rich Low_complexity Low_complexity 1 36 0 3 692 33 94 0 0 chr3L 14150722 14150818 -10392739 + AT_rich Low_complexity Low_complexity 1 96 0 3 692 206 133 43 22 chr3L 14153748 14153794 -10389763 + (TAAG)n Simple_repeat Simple_repeat 1 47 0 3 693 395 177 266 0 chr3L 14156037 14156161 -10387396 + DNAREP1_DM LINE Penelope 363 519 -75 3 693 22 0 0 0 chr3L 14158199 14158221 -10385336 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 23 0 0 0 chr3L 14158983 14159006 -10384551 + AT_rich Low_complexity Low_complexity 1 23 0 3 693 24 0 0 0 chr3L 14160391 14160415 -10383142 + AT_rich Low_complexity Low_complexity 1 24 0 3 693 27 0 0 0 chr3L 14161546 14161573 -10381984 + AT_rich Low_complexity Low_complexity 1 27 0 3 693 25 31 0 0 chr3L 14163147 14163179 -10380378 + AT_rich Low_complexity Low_complexity 1 32 0 3 693 234 125 0 0 chr3L 14165133 14165181 -10378376 + (ACTCG)n Simple_repeat Simple_repeat 3 50 0 3 693 22 0 0 0 chr3L 14172472 14172494 -10371063 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 22 0 0 0 chr3L 14178097 14178119 -10365438 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 212 227 0 0 chr3L 14179599 14179643 -10363914 + CT-rich Low_complexity Low_complexity 3 46 0 3 693 22 0 0 0 chr3L 14180314 14180336 -10363221 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 25 31 0 0 chr3L 14181734 14181766 -10361791 + AT_rich Low_complexity Low_complexity 1 32 0 3 693 22 80 0 0 chr3L 14182912 14182962 -10360595 + AT_rich Low_complexity Low_complexity 1 50 0 3 693 27 62 0 0 chr3L 14187187 14187235 -10356322 + AT_rich Low_complexity Low_complexity 1 48 0 3 693 182 37 37 0 chr3L 14191119 14191146 -10352411 + (TAAA)n Simple_repeat Simple_repeat 4 31 0 3 693 27 0 0 0 chr3L 14191295 14191322 -10352235 + AT_rich Low_complexity Low_complexity 1 27 0 3 693 219 36 0 0 chr3L 14191672 14191700 -10351857 + (ATTTG)n Simple_repeat Simple_repeat 3 30 0 3 693 21 0 0 0 chr3L 14191958 14191979 -10351578 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 27 0 0 0 chr3L 14192053 14192080 -10351477 + AT_rich Low_complexity Low_complexity 1 27 0 3 693 28 48 0 0 chr3L 14194478 14194520 -10349037 + AT_rich Low_complexity Low_complexity 1 42 0 3 693 36 23 0 0 chr3L 14194868 14194911 -10348646 + AT_rich Low_complexity Low_complexity 1 43 0 3 693 23 33 0 0 chr3L 14194924 14194954 -10348603 + AT_rich Low_complexity Low_complexity 1 30 0 3 693 29 60 0 0 chr3L 14198059 14198109 -10345448 + AT_rich Low_complexity Low_complexity 1 50 0 3 693 28 29 0 0 chr3L 14198177 14198212 -10345345 + AT_rich Low_complexity Low_complexity 1 35 0 3 693 21 0 0 0 chr3L 14198257 14198278 -10345279 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 243 0 0 0 chr3L 14204116 14204143 -10339414 + (T)n Simple_repeat Simple_repeat 1 27 0 3 693 30 27 0 0 chr3L 14205772 14205809 -10337748 + AT_rich Low_complexity Low_complexity 1 37 0 3 693 25 51 0 0 chr3L 14206002 14206041 -10337516 + AT_rich Low_complexity Low_complexity 1 39 0 3 693 27 73 0 0 chr3L 14206110 14206165 -10337392 + AT_rich Low_complexity Low_complexity 1 55 0 3 693 24 0 0 0 chr3L 14206330 14206354 -10337203 + AT_rich Low_complexity Low_complexity 1 24 0 3 693 24 0 0 0 chr3L 14210507 14210531 -10333026 + AT_rich Low_complexity Low_complexity 1 24 0 3 693 258 32 0 0 chr3L 14217021 14217052 -10326505 + (TTG)n Simple_repeat Simple_repeat 1 31 0 3 693 204 194 0 100 chr3L 14218378 14218458 -10325099 + A-rich Low_complexity Low_complexity 3 74 0 3 693 245 104 0 59 chr3L 14218884 14218935 -10324622 + (CAA)n Simple_repeat Simple_repeat 1 48 0 3 693 23 0 0 0 chr3L 14220878 14220901 -10322656 + AT_rich Low_complexity Low_complexity 1 23 0 3 693 216 0 0 0 chr3L 14221291 14221315 -10322242 + (CATATA)n Simple_repeat Simple_repeat 6 29 0 3 693 29 60 0 0 chr3L 14223435 14223485 -10320072 + AT_rich Low_complexity Low_complexity 1 50 0 3 693 30 0 0 0 chr3L 14227997 14228027 -10315530 + AT_rich Low_complexity Low_complexity 1 30 0 3 693 21 0 0 0 chr3L 14228664 14228685 -10314872 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 180 217 0 0 chr3L 14229350 14229396 -10314161 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 693 21 0 0 0 chr3L 14229436 14229457 -10314100 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 23 0 0 0 chr3L 14229931 14229954 -10313603 + AT_rich Low_complexity Low_complexity 1 23 0 3 693 25 0 0 0 chr3L 14231121 14231146 -10312411 + AT_rich Low_complexity Low_complexity 1 25 0 3 693 22 0 0 0 chr3L 14232544 14232566 -10310991 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 21 0 0 0 chr3L 14235935 14235956 -10307601 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 27 62 0 0 chr3L 14237157 14237205 -10306352 + AT_rich Low_complexity Low_complexity 1 48 0 3 693 22 70 0 0 chr3L 14237241 14237284 -10306273 + AT_rich Low_complexity Low_complexity 1 43 0 3 693 36 53 0 0 chr3L 14237659 14237716 -10305841 + AT_rich Low_complexity Low_complexity 1 57 0 3 693 21 82 0 0 chr3L 14237735 14237784 -10305773 + AT_rich Low_complexity Low_complexity 1 49 0 3 693 30 45 0 0 chr3L 14238095 14238139 -10305418 + AT_rich Low_complexity Low_complexity 1 44 0 3 693 246 75 0 70 chr3L 14238715 14238758 -10304799 - PROTOP_A DNA P -556 549 510 3 693 22 35 0 0 chr3L 14239837 14239866 -10303691 + AT_rich Low_complexity Low_complexity 1 29 0 3 693 30 0 0 0 chr3L 14240046 14240076 -10303481 + AT_rich Low_complexity Low_complexity 1 30 0 3 693 24 32 0 0 chr3L 14240093 14240124 -10303433 + AT_rich Low_complexity Low_complexity 1 31 0 3 693 22 0 0 0 chr3L 14240281 14240303 -10303254 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 21 0 0 0 chr3L 14246985 14247006 -10296551 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 22 35 0 0 chr3L 14247365 14247394 -10296163 + AT_rich Low_complexity Low_complexity 1 29 0 3 693 24 32 0 0 chr3L 14248120 14248151 -10295406 + AT_rich Low_complexity Low_complexity 1 31 0 3 693 22 0 0 0 chr3L 14248330 14248352 -10295205 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 25 0 0 0 chr3L 14248365 14248390 -10295167 + AT_rich Low_complexity Low_complexity 1 25 0 3 693 27 29 0 0 chr3L 14250409 14250443 -10293114 + AT_rich Low_complexity Low_complexity 1 34 0 3 693 227 217 0 0 chr3L 14250683 14250729 -10292828 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 693 24 32 0 0 chr3L 14251155 14251186 -10292371 + AT_rich Low_complexity Low_complexity 1 31 0 3 693 188 67 33 0 chr3L 14253480 14253510 -10290047 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 693 22 35 0 0 chr3L 14254530 14254559 -10288998 + AT_rich Low_complexity Low_complexity 1 29 0 3 693 240 163 0 0 chr3L 14255480 14255523 -10288034 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 693 26 74 0 0 chr3L 14256600 14256654 -10286903 + AT_rich Low_complexity Low_complexity 1 54 0 3 693 22 0 0 0 chr3L 14259118 14259140 -10284417 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 37607 2 0 0 chr3L 14260527 14264893 -10278664 + FW_DM LINE Jockey 327 4692 0 3 693 26 30 0 0 chr3L 14265546 14265579 -10277978 + AT_rich Low_complexity Low_complexity 1 33 0 3 693 22 0 0 0 chr3L 14266936 14266958 -10276599 + AT_rich Low_complexity Low_complexity 1 22 0 3 693 44 56 0 0 chr3L 14277634 14277706 -10265851 + AT_rich Low_complexity Low_complexity 1 72 0 3 693 31 44 0 0 chr3L 14282171 14282216 -10261341 + AT_rich Low_complexity Low_complexity 1 45 0 3 693 22 56 0 0 chr3L 14283406 14283442 -10260115 + AT_rich Low_complexity Low_complexity 1 36 0 3 693 252 0 0 0 chr3L 14284236 14284264 -10259293 + (T)n Simple_repeat Simple_repeat 1 28 0 3 693 27 29 0 0 chr3L 14285042 14285076 -10258481 + AT_rich Low_complexity Low_complexity 1 34 0 3 693 21 0 0 0 chr3L 14285890 14285911 -10257646 + AT_rich Low_complexity Low_complexity 1 21 0 3 693 21 0 0 0 chr3L 14286429 14286450 -10257107 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 3698 9 0 0 chr3L 14289137 14289565 -10253992 - ROO_LTR LTR Pao 0 428 1 3 694 22 35 0 0 chr3L 14290557 14290586 -10252971 + AT_rich Low_complexity Low_complexity 1 29 0 3 694 51 31 0 0 chr3L 14291575 14291640 -10251917 + AT_rich Low_complexity Low_complexity 1 65 0 3 694 21 36 0 0 chr3L 14294581 14294609 -10248948 + AT_rich Low_complexity Low_complexity 1 28 0 3 694 330 67 0 0 chr3L 14295312 14295357 -10248200 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 694 21 0 0 0 chr3L 14295722 14295743 -10247814 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 206 246 14 14 chr3L 14303847 14303921 -10239636 + (CA)n Simple_repeat Simple_repeat 2 75 0 3 694 21 36 0 0 chr3L 14304903 14304931 -10238626 + AT_rich Low_complexity Low_complexity 1 28 0 3 694 225 0 0 0 chr3L 14305181 14305206 -10238351 + (T)n Simple_repeat Simple_repeat 1 25 0 3 694 41106 2 0 0 chr3L 14305215 14309926 -10233631 - BS2 LINE Jockey 0 4721 11 3 694 211 200 0 35 chr3L 14310026 14310083 -10233474 + A-rich Low_complexity Low_complexity 2 56 0 3 694 23 0 0 0 chr3L 14310097 14310120 -10233437 + AT_rich Low_complexity Low_complexity 1 23 0 3 694 21 57 0 0 chr3L 14312499 14312534 -10231023 + AT_rich Low_complexity Low_complexity 1 35 0 3 694 244 178 14 14 chr3L 14314910 14314984 -10228573 + ROO_I LTR Pao 662 735 -7521 3 694 354 182 0 0 chr3L 14315156 14315233 -10228324 + ROO_I LTR Pao 652 728 -7528 3 694 22 0 0 0 chr3L 14316603 14316625 -10226932 + AT_rich Low_complexity Low_complexity 1 22 0 3 694 25 83 0 0 chr3L 14317860 14317920 -10225637 + AT_rich Low_complexity Low_complexity 1 60 0 3 694 31 58 0 0 chr3L 14318483 14318535 -10225022 + AT_rich Low_complexity Low_complexity 1 52 0 3 694 23 0 0 0 chr3L 14319457 14319480 -10224077 + AT_rich Low_complexity Low_complexity 1 23 0 3 694 297 0 0 0 chr3L 14320158 14320191 -10223366 + (TA)n Simple_repeat Simple_repeat 1 33 0 3 694 218 201 11 61 chr3L 14322605 14322785 -10220772 + (CCA)n Simple_repeat Simple_repeat 3 173 0 3 694 28 0 0 0 chr3L 14327482 14327510 -10216047 + AT_rich Low_complexity Low_complexity 1 28 0 3 694 218 213 16 0 chr3L 14328925 14328986 -10214571 + (CAAA)n Simple_repeat Simple_repeat 1 62 0 3 694 21 0 0 0 chr3L 14329393 14329414 -10214143 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 21 95 0 0 chr3L 14330609 14330672 -10212885 + AT_rich Low_complexity Low_complexity 1 63 0 3 694 24 0 0 0 chr3L 14332727 14332751 -10210806 + AT_rich Low_complexity Low_complexity 1 24 0 3 694 22 70 0 0 chr3L 14334546 14334589 -10208968 + AT_rich Low_complexity Low_complexity 1 43 0 3 694 35 63 0 0 chr3L 14336616 14336679 -10206878 + AT_rich Low_complexity Low_complexity 1 63 0 3 694 21 36 0 0 chr3L 14343022 14343050 -10200507 + AT_rich Low_complexity Low_complexity 1 28 0 3 694 21 0 0 0 chr3L 14346387 14346408 -10197149 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 217 95 23 23 chr3L 14354336 14354379 -10189178 + (TTA)n Simple_repeat Simple_repeat 1 43 0 3 694 217 276 0 26 chr3L 14354629 14354707 -10188850 + (TTG)n Simple_repeat Simple_repeat 1 76 0 3 694 32 43 0 0 chr3L 14354899 14354945 -10188612 + AT_rich Low_complexity Low_complexity 1 46 0 3 694 24 0 0 0 chr3L 14355021 14355045 -10188512 + AT_rich Low_complexity Low_complexity 1 24 0 3 694 23 33 0 0 chr3L 14355105 14355135 -10188422 + AT_rich Low_complexity Low_complexity 1 30 0 3 694 26 30 0 0 chr3L 14356349 14356382 -10187175 + AT_rich Low_complexity Low_complexity 1 33 0 3 694 24 0 0 0 chr3L 14362000 14362024 -10181533 + AT_rich Low_complexity Low_complexity 1 24 0 3 694 25 0 0 0 chr3L 14363698 14363723 -10179834 + AT_rich Low_complexity Low_complexity 1 25 0 3 694 37 23 0 0 chr3L 14370427 14370471 -10173086 + AT_rich Low_complexity Low_complexity 1 44 0 3 694 23 0 0 0 chr3L 14374459 14374482 -10169075 + AT_rich Low_complexity Low_complexity 1 23 0 3 694 237 196 18 18 chr3L 14377811 14377868 -10165689 + (ATG)n Simple_repeat Simple_repeat 3 59 0 3 694 21 0 0 0 chr3L 14379648 14379669 -10163888 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 27 49 0 0 chr3L 14381635 14381676 -10161881 + AT_rich Low_complexity Low_complexity 1 41 0 3 694 26 0 0 0 chr3L 14383723 14383749 -10159808 + AT_rich Low_complexity Low_complexity 1 26 0 3 694 21 0 0 0 chr3L 14385057 14385078 -10158479 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 26 0 0 0 chr3L 14385299 14385325 -10158232 + AT_rich Low_complexity Low_complexity 1 26 0 3 694 22 56 0 0 chr3L 14385480 14385516 -10158041 + AT_rich Low_complexity Low_complexity 1 36 0 3 694 43 97 0 0 chr3L 14386148 14386282 -10157275 + AT_rich Low_complexity Low_complexity 1 134 0 3 694 21 0 0 0 chr3L 14387792 14387813 -10155744 + AT_rich Low_complexity Low_complexity 1 21 0 3 694 24 0 0 0 chr3L 14390517 14390541 -10153016 + AT_rich Low_complexity Low_complexity 1 24 0 3 694 26 50 0 0 chr3L 14391309 14391349 -10152208 + AT_rich Low_complexity Low_complexity 1 40 0 3 694 23 0 0 0 chr3L 14393870 14393893 -10149664 + AT_rich Low_complexity Low_complexity 1 23 0 3 694 23 33 0 0 chr3L 14396045 14396075 -10147482 + AT_rich Low_complexity Low_complexity 1 30 0 3 694 21 57 0 0 chr3L 14396360 14396395 -10147162 + AT_rich Low_complexity Low_complexity 1 35 0 3 694 25 0 0 0 chr3L 14400363 14400388 -10143169 + AT_rich Low_complexity Low_complexity 1 25 0 3 694 236 107 34 51 chr3L 14401165 14401224 -10142333 + DNAREP1_DM LINE Penelope 94 151 -443 3 694 457 156 22 0 chr3L 14401265 14401355 -10142202 + DNAREP1_DM LINE Penelope 341 432 -162 3 694 275 109 0 113 chr3L 14401363 14401425 -10142132 + DNAREP1_DM LINE Penelope 539 593 -1 3 694 186 71 0 0 chr3L 14401467 14401495 -10142062 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 694 24 0 0 0 chr3L 14402246 14402270 -10141287 + AT_rich Low_complexity Low_complexity 1 24 0 3 694 35 24 0 0 chr3L 14402336 14402378 -10141179 + AT_rich Low_complexity Low_complexity 1 42 0 3 694 27 0 0 0 chr3L 14404143 14404170 -10139387 + AT_rich Low_complexity Low_complexity 1 27 0 3 694 225 178 54 14 chr3L 14404490 14404564 -10138993 + (TATAA)n Simple_repeat Simple_repeat 5 81 0 3 694 22 35 0 0 chr3L 14405807 14405836 -10137721 + AT_rich Low_complexity Low_complexity 1 29 0 3 694 33 0 0 0 chr3L 14405989 14406022 -10137535 + AT_rich Low_complexity Low_complexity 1 33 0 3 694 217 250 0 0 chr3L 14411494 14411550 -10132007 + A-rich Low_complexity Low_complexity 1 56 0 3 694 31 58 0 0 chr3L 14414614 14414666 -10128891 + AT_rich Low_complexity Low_complexity 1 52 0 3 694 243 177 59 71 chr3L 14414942 14415027 -10128530 - ROO_I LTR Pao -7516 740 657 3 694 199 73 0 68 chr3L 14415614 14415658 -10127899 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 694 374 228 0 11 chr3L 14416762 14416855 -10126702 + (TCTCTG)n Simple_repeat Simple_repeat 1 92 0 3 694 28 48 0 0 chr3L 14417877 14417919 -10125638 + AT_rich Low_complexity Low_complexity 1 42 0 3 695 21 36 0 0 chr3L 14424974 14425002 -10118555 + AT_rich Low_complexity Low_complexity 1 28 0 3 695 23 33 0 0 chr3L 14426445 14426475 -10117082 + AT_rich Low_complexity Low_complexity 1 30 0 3 695 202 220 0 0 chr3L 14428057 14428107 -10115450 + A-rich Low_complexity Low_complexity 1 50 0 3 695 35 0 0 0 chr3L 14432221 14432256 -10111301 + AT_rich Low_complexity Low_complexity 1 35 0 3 695 44 46 0 0 chr3L 14436232 14436297 -10107260 + AT_rich Low_complexity Low_complexity 1 65 0 3 695 21 0 0 0 chr3L 14439775 14439796 -10103761 + AT_rich Low_complexity Low_complexity 1 21 0 3 695 26 0 0 0 chr3L 14442112 14442138 -10101419 + AT_rich Low_complexity Low_complexity 1 26 0 3 695 198 0 0 0 chr3L 14443394 14443416 -10100141 + (T)n Simple_repeat Simple_repeat 1 22 0 3 695 186 174 0 0 chr3L 14445044 14445090 -10098467 + (TCCG)n Simple_repeat Simple_repeat 4 49 0 3 695 25 65 0 0 chr3L 14446962 14447008 -10096549 + AT_rich Low_complexity Low_complexity 1 46 0 3 695 221 167 0 0 chr3L 14449245 14449287 -10094270 + A-rich Low_complexity Low_complexity 1 42 0 3 695 45 93 0 0 chr3L 14449757 14449886 -10093671 + AT_rich Low_complexity Low_complexity 1 129 0 3 695 26 0 0 0 chr3L 14452143 14452169 -10091388 + AT_rich Low_complexity Low_complexity 1 26 0 3 695 200 195 24 0 chr3L 14453446 14453487 -10090070 + (TTCGGG)n Simple_repeat Simple_repeat 4 45 0 3 695 22 80 0 0 chr3L 14455551 14455601 -10087956 + AT_rich Low_complexity Low_complexity 1 50 0 3 695 21 82 0 0 chr3L 14459941 14459990 -10083567 + AT_rich Low_complexity Low_complexity 1 49 0 3 695 2389 0 0 0 chr3L 14461599 14461875 -10081682 + Copia_LTR LTR Copia 1 276 0 3 695 40891 1 0 1 chr3L 14461875 14466471 -10077086 + Copia_I LTR Copia 1 4593 0 3 695 2389 0 0 0 chr3L 14466471 14466747 -10076810 + Copia_LTR LTR Copia 1 276 0 3 695 21 0 0 0 chr3L 14468672 14468693 -10074864 + AT_rich Low_complexity Low_complexity 1 21 0 3 695 21 0 0 0 chr3L 14470486 14470507 -10073050 + AT_rich Low_complexity Low_complexity 1 21 0 3 695 22 0 0 0 chr3L 14474738 14474760 -10068797 + AT_rich Low_complexity Low_complexity 1 22 0 3 695 28 86 0 0 chr3L 14474993 14475063 -10068494 + AT_rich Low_complexity Low_complexity 1 70 0 3 695 22 0 0 0 chr3L 14475408 14475430 -10068127 + AT_rich Low_complexity Low_complexity 1 22 0 3 695 288 70 0 0 chr3L 14477112 14477155 -10066402 + (CAG)n Simple_repeat Simple_repeat 2 44 0 3 695 211 216 0 0 chr3L 14479771 14479822 -10063735 + A-rich Low_complexity Low_complexity 1 51 0 3 695 200 284 0 0 chr3L 14479879 14479946 -10063611 + A-rich Low_complexity Low_complexity 1 67 0 3 695 23 0 0 0 chr3L 14480221 14480244 -10063313 + AT_rich Low_complexity Low_complexity 1 23 0 3 695 22 56 0 0 chr3L 14483587 14483623 -10059934 + AT_rich Low_complexity Low_complexity 1 36 0 3 695 22 70 0 0 chr3L 14484768 14484811 -10058746 + AT_rich Low_complexity Low_complexity 1 43 0 3 695 189 121 0 0 chr3L 14488834 14488867 -10054690 + (TTCGG)n Simple_repeat Simple_repeat 3 35 0 3 695 29 28 0 0 chr3L 14490802 14490838 -10052719 + AT_rich Low_complexity Low_complexity 1 36 0 3 695 189 178 0 0 chr3L 14492269 14492314 -10051243 + (CAA)n Simple_repeat Simple_repeat 3 47 0 3 695 29 60 0 0 chr3L 14493557 14493607 -10049950 + AT_rich Low_complexity Low_complexity 1 50 0 3 695 21 36 0 0 chr3L 14494059 14494087 -10049470 + AT_rich Low_complexity Low_complexity 1 28 0 3 695 21 0 0 0 chr3L 14495519 14495540 -10048017 + AT_rich Low_complexity Low_complexity 1 21 0 3 695 314 269 28 9 chr3L 14497264 14497275 -10046282 + P_DG DNA P 2744 2851 -34 3 695 620 126 0 0 chr3L 14497275 14497370 -10046187 - DNAREP1_DM LINE Penelope 0 594 500 3 695 531 196 19 57 chr3L 14497424 14497581 -10045976 - DNAREP1_DM LINE Penelope -443 151 1 3 695 40 37 0 0 chr3L 14500568 14500622 -10042935 + AT_rich Low_complexity Low_complexity 1 54 0 3 695 241 169 41 27 chr3L 14503765 14503838 -10039719 + (TTAA)n Simple_repeat Simple_repeat 3 76 0 3 695 31 26 0 0 chr3L 14506717 14506755 -10036802 + AT_rich Low_complexity Low_complexity 1 38 0 3 695 34 65 0 0 chr3L 14513959 14514021 -10029536 + AT_rich Low_complexity Low_complexity 1 62 0 3 695 40376 2 0 0 chr3L 14517483 14522176 -10021381 + FW_DM LINE Jockey 1 4691 -1 3 695 225 240 20 0 chr3L 14523000 14523050 -10020507 + (CTCGG)n Simple_repeat Simple_repeat 4 54 0 3 695 22 56 0 0 chr3L 14527863 14527899 -10015658 + AT_rich Low_complexity Low_complexity 1 36 0 3 695 33 80 0 0 chr3L 14530446 14530521 -10013036 + AT_rich Low_complexity Low_complexity 1 75 0 3 695 28 0 0 0 chr3L 14533509 14533537 -10010020 + AT_rich Low_complexity Low_complexity 1 28 0 3 695 23 0 0 0 chr3L 14536097 14536120 -10007437 + AT_rich Low_complexity Low_complexity 1 23 0 3 695 24 0 0 0 chr3L 14539516 14539540 -10004017 + AT_rich Low_complexity Low_complexity 1 24 0 3 695 34 55 0 0 chr3L 14540631 14540686 -10002871 + AT_rich Low_complexity Low_complexity 1 55 0 3 695 207 162 0 0 chr3L 14544119 14544156 -9999401 + GA-rich Low_complexity Low_complexity 2 38 0 3 695 201 39 0 0 chr3L 14544420 14544446 -9999111 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 695 28 48 0 0 chr3L 14545105 14545147 -9998410 + AT_rich Low_complexity Low_complexity 1 42 0 3 695 230 0 33 0 chr3L 14547700 14547730 -9995827 + (TTA)n Simple_repeat Simple_repeat 3 33 0 3 696 23 0 0 0 chr3L 14549934 14549957 -9993600 + AT_rich Low_complexity Low_complexity 1 23 0 3 696 39 38 0 0 chr3L 14550151 14550204 -9993353 + AT_rich Low_complexity Low_complexity 1 53 0 3 696 33 56 0 0 chr3L 14550901 14550955 -9992602 + AT_rich Low_complexity Low_complexity 1 54 0 3 696 23 54 0 0 chr3L 14551477 14551514 -9992043 + AT_rich Low_complexity Low_complexity 1 37 0 3 696 23 68 0 0 chr3L 14551538 14551582 -9991975 + AT_rich Low_complexity Low_complexity 1 44 0 3 696 28 0 0 0 chr3L 14552735 14552763 -9990794 + AT_rich Low_complexity Low_complexity 1 28 0 3 696 487 161 0 12 chr3L 14556301 14556383 -9987174 - DNAREP1_DM LINE Penelope -107 487 407 3 696 24 53 0 0 chr3L 14556441 14556479 -9987078 + AT_rich Low_complexity Low_complexity 1 38 0 3 696 22 35 0 0 chr3L 14556565 14556594 -9986963 + AT_rich Low_complexity Low_complexity 1 29 0 3 696 232 254 0 0 chr3L 14557271 14557338 -9986219 + T-rich Low_complexity Low_complexity 1 67 0 3 696 25 90 0 0 chr3L 14557859 14557926 -9985631 + AT_rich Low_complexity Low_complexity 1 67 0 3 696 24 53 0 0 chr3L 14561199 14561237 -9982320 + AT_rich Low_complexity Low_complexity 1 38 0 3 696 27 0 0 0 chr3L 14562266 14562293 -9981264 + AT_rich Low_complexity Low_complexity 1 27 0 3 696 24 0 0 0 chr3L 14563166 14563190 -9980367 + AT_rich Low_complexity Low_complexity 1 24 0 3 696 30 27 0 0 chr3L 14564785 14564822 -9978735 + AT_rich Low_complexity Low_complexity 1 37 0 3 696 23 33 0 0 chr3L 14564928 14564958 -9978599 + AT_rich Low_complexity Low_complexity 1 30 0 3 696 24 0 0 0 chr3L 14567867 14567891 -9975666 + AT_rich Low_complexity Low_complexity 1 24 0 3 696 26 50 0 0 chr3L 14570147 14570187 -9973370 + AT_rich Low_complexity Low_complexity 1 40 0 3 696 23 0 0 0 chr3L 14570219 14570242 -9973315 + AT_rich Low_complexity Low_complexity 1 23 0 3 696 192 40 0 0 chr3L 14573712 14573737 -9969820 + (GA)n Simple_repeat Simple_repeat 2 26 0 3 696 35 71 0 0 chr3L 14576327 14576397 -9967160 + AT_rich Low_complexity Low_complexity 1 70 0 3 696 283 145 29 0 chr3L 14577659 14577728 -9965829 + (CAG)n Simple_repeat Simple_repeat 1 71 0 3 696 21 0 0 0 chr3L 14579787 14579808 -9963749 + AT_rich Low_complexity Low_complexity 1 21 0 3 696 23 33 0 0 chr3L 14580569 14580599 -9962958 + AT_rich Low_complexity Low_complexity 1 30 0 3 696 26 64 0 0 chr3L 14582315 14582362 -9961195 + AT_rich Low_complexity Low_complexity 1 47 0 3 696 23 0 0 0 chr3L 14586172 14586195 -9957362 + AT_rich Low_complexity Low_complexity 1 23 0 3 696 227 343 9 28 chr3L 14591556 14591664 -9951893 - ROO_I LTR Pao -7514 742 637 3 696 24 0 0 0 chr3L 14594427 14594451 -9949106 + AT_rich Low_complexity Low_complexity 1 24 0 3 696 32 0 0 0 chr3L 14596144 14596176 -9947381 + AT_rich Low_complexity Low_complexity 1 32 0 3 696 25 75 0 0 chr3L 14597103 14597156 -9946401 + AT_rich Low_complexity Low_complexity 1 53 0 3 696 34 24 0 0 chr3L 14597206 14597247 -9946310 + AT_rich Low_complexity Low_complexity 1 41 0 3 696 28 29 0 0 chr3L 14598005 14598040 -9945517 + AT_rich Low_complexity Low_complexity 1 35 0 3 696 26 98 0 0 chr3L 14602877 14602959 -9940598 + AT_rich Low_complexity Low_complexity 1 82 0 3 696 23 92 0 0 chr3L 14603800 14603865 -9939692 + AT_rich Low_complexity Low_complexity 1 65 0 3 696 48 32 0 0 chr3L 14604577 14604639 -9938918 + AT_rich Low_complexity Low_complexity 1 62 0 3 696 29 98 0 0 chr3L 14604706 14604798 -9938759 + AT_rich Low_complexity Low_complexity 1 92 0 3 696 180 214 0 0 chr3L 14605218 14605274 -9938283 + (CAGT)n Simple_repeat Simple_repeat 4 59 0 3 696 32 26 0 0 chr3L 14607100 14607139 -9936418 + AT_rich Low_complexity Low_complexity 1 39 0 3 696 28 0 0 0 chr3L 14608256 14608284 -9935273 + AT_rich Low_complexity Low_complexity 1 28 0 3 696 30 0 0 0 chr3L 14608497 14608527 -9935030 + AT_rich Low_complexity Low_complexity 1 30 0 3 696 25 0 0 0 chr3L 14608589 14608614 -9934943 + AT_rich Low_complexity Low_complexity 1 25 0 3 696 21 0 0 0 chr3L 14608969 14608990 -9934567 + AT_rich Low_complexity Low_complexity 1 21 0 3 696 29 70 0 0 chr3L 14609870 14609927 -9933630 + AT_rich Low_complexity Low_complexity 1 57 0 3 696 28 0 0 0 chr3L 14611946 14611974 -9931583 + AT_rich Low_complexity Low_complexity 1 28 0 3 696 22 35 0 0 chr3L 14615491 14615520 -9928037 + AT_rich Low_complexity Low_complexity 1 29 0 3 696 26 64 0 0 chr3L 14617327 14617374 -9926183 + AT_rich Low_complexity Low_complexity 1 47 0 3 696 22 0 0 0 chr3L 14617405 14617427 -9926130 + AT_rich Low_complexity Low_complexity 1 22 0 3 696 21 0 0 0 chr3L 14623359 14623380 -9920177 + AT_rich Low_complexity Low_complexity 1 21 0 3 696 961 122 151 12 chr3L 14623397 14623563 -9919994 + DNAREP1_DM LINE Penelope 406 594 0 3 696 27 29 0 0 chr3L 14626528 14626562 -9916995 + AT_rich Low_complexity Low_complexity 1 34 0 3 696 22 0 0 0 chr3L 14626602 14626624 -9916933 + AT_rich Low_complexity Low_complexity 1 22 0 3 696 205 260 0 0 chr3L 14627819 14627869 -9915688 + CT-rich Low_complexity Low_complexity 2 51 0 3 696 21 71 0 0 chr3L 14628473 14628515 -9915042 + AT_rich Low_complexity Low_complexity 1 42 0 3 696 22 35 0 0 chr3L 14633968 14633997 -9909560 + AT_rich Low_complexity Low_complexity 1 29 0 3 696 182 150 25 0 chr3L 14635319 14635359 -9908198 + (TCCG)n Simple_repeat Simple_repeat 1 41 0 3 696 27 0 0 0 chr3L 14637505 14637532 -9906025 + AT_rich Low_complexity Low_complexity 1 27 0 3 696 21 0 0 0 chr3L 14638615 14638636 -9904921 + AT_rich Low_complexity Low_complexity 1 21 0 3 696 21 36 0 0 chr3L 14642794 14642822 -9900735 + AT_rich Low_complexity Low_complexity 1 28 0 3 696 22 35 0 0 chr3L 14643664 14643693 -9899864 + AT_rich Low_complexity Low_complexity 1 29 0 3 696 189 0 0 0 chr3L 14648792 14648813 -9894744 + (T)n Simple_repeat Simple_repeat 1 21 0 3 696 21 0 0 0 chr3L 14649293 14649314 -9894243 + AT_rich Low_complexity Low_complexity 1 21 0 3 696 31 0 0 0 chr3L 14662185 14662216 -9881341 + AT_rich Low_complexity Low_complexity 1 31 0 3 696 235 318 11 11 chr3L 14662677 14662766 -9880791 + (CAA)n Simple_repeat Simple_repeat 2 90 0 3 696 21 36 0 0 chr3L 14664619 14664647 -9878910 + AT_rich Low_complexity Low_complexity 1 28 0 3 696 180 0 0 0 chr3L 14666154 14666174 -9877383 + (AAATG)n Simple_repeat Simple_repeat 3 22 0 3 696 22 56 0 0 chr3L 14669376 14669412 -9874145 + AT_rich Low_complexity Low_complexity 1 36 0 3 696 317 250 0 0 chr3L 14670714 14670794 -9872763 + (CTG)n Simple_repeat Simple_repeat 1 80 0 3 696 27 29 0 0 chr3L 14671530 14671564 -9871993 + AT_rich Low_complexity Low_complexity 1 34 0 3 696 23 0 0 0 chr3L 14674425 14674448 -9869109 + AT_rich Low_complexity Low_complexity 1 23 0 3 696 213 39 0 0 chr3L 14675089 14675115 -9868442 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 3 696 37 81 0 0 chr3L 14675397 14675483 -9868074 + AT_rich Low_complexity Low_complexity 1 86 0 3 696 36 0 0 0 chr3L 14676741 14676777 -9866780 + AT_rich Low_complexity Low_complexity 1 36 0 3 697 26 0 0 0 chr3L 14681043 14681069 -9862488 + AT_rich Low_complexity Low_complexity 1 26 0 3 697 22 56 0 0 chr3L 14682071 14682107 -9861450 + AT_rich Low_complexity Low_complexity 1 36 0 3 697 186 103 0 0 chr3L 14687065 14687094 -9856463 + (CAT)n Simple_repeat Simple_repeat 2 30 0 3 697 47 44 0 0 chr3L 14690276 14690344 -9853213 + AT_rich Low_complexity Low_complexity 1 68 0 3 697 32 86 0 0 chr3L 14696449 14696530 -9847027 + AT_rich Low_complexity Low_complexity 1 81 0 3 697 27 29 0 0 chr3L 14697046 14697080 -9846477 + AT_rich Low_complexity Low_complexity 1 34 0 3 697 26 0 0 0 chr3L 14702366 14702392 -9841165 + AT_rich Low_complexity Low_complexity 1 26 0 3 697 28 86 0 0 chr3L 14702473 14702543 -9841014 + AT_rich Low_complexity Low_complexity 1 70 0 3 697 23 0 0 0 chr3L 14702841 14702864 -9840693 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 26 50 0 0 chr3L 14705239 14705279 -9838278 + AT_rich Low_complexity Low_complexity 1 40 0 3 697 252 86 0 0 chr3L 14705761 14705796 -9837761 + (TCCA)n Simple_repeat Simple_repeat 1 35 0 3 697 183 162 0 0 chr3L 14709468 14709505 -9834052 + GA-rich Low_complexity Low_complexity 4 40 0 3 697 195 42 0 0 chr3L 14712726 14712750 -9830807 + (CAG)n Simple_repeat Simple_repeat 2 25 0 3 697 15303 6 3 2 chr3L 14714331 14716121 -9827436 + DMRT1B LINE R1 3391 5183 0 3 697 192 77 0 0 chr3L 14717805 14717831 -9825726 + (TTCCG)n Simple_repeat Simple_repeat 5 30 0 3 697 23 33 0 0 chr3L 14718603 14718633 -9824924 + AT_rich Low_complexity Low_complexity 1 30 0 3 697 35 71 0 0 chr3L 14718654 14718724 -9824833 + AT_rich Low_complexity Low_complexity 1 70 0 3 697 21111 5 0 0 chr3L 14718753 14721221 -9822336 + DOC LINE Jockey 873 3340 -1385 3 697 3866 20 12 2 chr3L 14721193 14721682 -9821875 + DOC LINE Jockey 4232 4725 0 3 697 23 0 0 0 chr3L 14723659 14723682 -9819875 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 23 0 0 0 chr3L 14725112 14725135 -9818422 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 203 186 0 48 chr3L 14726741 14726773 -9816784 + (TTAAA)n Simple_repeat Simple_repeat 2 33 0 3 697 180 0 0 0 chr3L 14726773 14726793 -9816764 + (TTA)n Simple_repeat Simple_repeat 1 20 0 3 697 203 186 0 48 chr3L 14726793 14726822 -9816735 + (TTAAA)n Simple_repeat Simple_repeat 4 30 0 3 697 276 111 0 0 chr3L 14728425 14728470 -9815087 + (CAAA)n Simple_repeat Simple_repeat 1 45 0 3 697 24 32 0 0 chr3L 14730172 14730203 -9813354 + AT_rich Low_complexity Low_complexity 1 31 0 3 697 183 42 0 0 chr3L 14730463 14730487 -9813070 + (CAGC)n Simple_repeat Simple_repeat 1 24 0 3 697 180 97 0 0 chr3L 14732496 14732527 -9811030 + (A)n Simple_repeat Simple_repeat 1 31 0 3 697 276 254 0 95 chr3L 14732583 14732709 -9810848 + ROO_I LTR Pao 633 746 -7510 3 697 259 271 0 14 chr3L 14732834 14732905 -9810652 + (CAG)n Simple_repeat Simple_repeat 2 71 0 3 697 21 0 0 0 chr3L 14733499 14733520 -9810037 + AT_rich Low_complexity Low_complexity 1 21 0 3 697 27 73 0 0 chr3L 14735053 14735108 -9808449 + AT_rich Low_complexity Low_complexity 1 55 0 3 697 33 25 0 0 chr3L 14737195 14737235 -9806322 + AT_rich Low_complexity Low_complexity 1 40 0 3 697 28 48 0 0 chr3L 14737245 14737287 -9806270 + AT_rich Low_complexity Low_complexity 1 42 0 3 697 21 36 0 0 chr3L 14738417 14738445 -9805112 + AT_rich Low_complexity Low_complexity 1 28 0 3 697 38 22 0 0 chr3L 14738997 14739042 -9804515 + AT_rich Low_complexity Low_complexity 1 45 0 3 697 23 0 0 0 chr3L 14739310 14739333 -9804224 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 21 0 0 0 chr3L 14740770 14740791 -9802766 + AT_rich Low_complexity Low_complexity 1 21 0 3 697 186 43 0 0 chr3L 14742016 14742039 -9801518 + (CTG)n Simple_repeat Simple_repeat 1 23 0 3 697 248 206 9 81 chr3L 14742573 14742684 -9800873 - ROO_I LTR Pao -7515 741 639 3 697 234 62 0 0 chr3L 14742712 14742744 -9800813 + (TCC)n Simple_repeat Simple_repeat 1 32 0 3 697 21 107 0 0 chr3L 14743328 14743412 -9800145 + AT_rich Low_complexity Low_complexity 1 84 0 3 697 189 154 0 0 chr3L 14743661 14743700 -9799857 + (ATTG)n Simple_repeat Simple_repeat 1 39 0 3 697 252 165 0 0 chr3L 14744269 14744348 -9799209 - ROO_I LTR Pao -7522 734 656 3 697 297 193 0 35 chr3L 14744559 14744645 -9798912 - ROO_I LTR Pao -7533 723 641 3 697 270 133 33 0 chr3L 14744672 14744732 -9798825 - ROO_I LTR Pao -7518 738 677 3 697 41 48 0 0 chr3L 14745491 14745553 -9798004 + AT_rich Low_complexity Low_complexity 1 62 0 3 697 267 114 0 0 chr3L 14746186 14746230 -9797327 + (CTG)n Simple_repeat Simple_repeat 1 44 0 3 697 241 190 0 17 chr3L 14749623 14749682 -9793875 + CT-rich Low_complexity Low_complexity 1 58 0 3 697 231 133 0 0 chr3L 14750478 14750523 -9793034 + (TC)n Simple_repeat Simple_repeat 1 45 0 3 697 21 36 0 0 chr3L 14752665 14752693 -9790864 + AT_rich Low_complexity Low_complexity 1 28 0 3 697 209 194 0 0 chr3L 14752943 14752979 -9790578 + (TATG)n Simple_repeat Simple_repeat 1 36 0 3 697 187 31 62 0 chr3L 14755754 14755786 -9787771 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 697 21 0 0 0 chr3L 14759457 14759478 -9784079 + AT_rich Low_complexity Low_complexity 1 21 0 3 697 25 31 0 0 chr3L 14759628 14759660 -9783897 + AT_rich Low_complexity Low_complexity 1 32 0 3 697 23 0 0 0 chr3L 14760437 14760460 -9783097 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 23 54 0 0 chr3L 14769341 14769378 -9774179 + AT_rich Low_complexity Low_complexity 1 37 0 3 697 219 244 0 0 chr3L 14774504 14774549 -9769008 + (TATG)n Simple_repeat Simple_repeat 3 47 0 3 697 23 33 0 0 chr3L 14774873 14774903 -9768654 + AT_rich Low_complexity Low_complexity 1 30 0 3 697 25 31 0 0 chr3L 14774947 14774979 -9768578 + AT_rich Low_complexity Low_complexity 1 32 0 3 697 25 0 0 0 chr3L 14779724 14779749 -9763808 + AT_rich Low_complexity Low_complexity 1 25 0 3 697 210 193 0 0 chr3L 14782558 14782615 -9760942 + (CAG)n Simple_repeat Simple_repeat 3 59 0 3 697 218 81 27 0 chr3L 14784822 14784859 -9758698 + (CATAA)n Simple_repeat Simple_repeat 4 41 0 3 697 279 79 0 0 chr3L 14786028 14786066 -9757491 + (CAG)n Simple_repeat Simple_repeat 2 39 0 3 697 23 0 0 0 chr3L 14786690 14786713 -9756844 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 29 47 0 0 chr3L 14786758 14786801 -9756756 + AT_rich Low_complexity Low_complexity 1 43 0 3 697 273 57 0 0 chr3L 14791332 14791367 -9752190 + (CAG)n Simple_repeat Simple_repeat 1 35 0 3 697 204 125 0 0 chr3L 14791389 14791421 -9752136 + (CAA)n Simple_repeat Simple_repeat 1 32 0 3 697 259 289 7 34 chr3L 14792392 14792539 -9751018 + A-rich Low_complexity Low_complexity 2 144 0 3 697 26 0 0 0 chr3L 14792640 14792666 -9750891 + AT_rich Low_complexity Low_complexity 1 26 0 3 697 292 235 0 0 chr3L 14792941 14793026 -9750531 + A-rich Low_complexity Low_complexity 1 85 0 3 697 201 78 57 38 chr3L 14793192 14793245 -9750312 + A-rich Low_complexity Low_complexity 3 56 0 3 697 22 70 0 0 chr3L 14795395 14795438 -9748119 + AT_rich Low_complexity Low_complexity 1 43 0 3 697 21 0 0 0 chr3L 14797622 14797643 -9745914 + AT_rich Low_complexity Low_complexity 1 21 0 3 697 180 152 0 0 chr3L 14798089 14798122 -9745435 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 3 697 23 0 0 0 chr3L 14799400 14799423 -9744134 + AT_rich Low_complexity Low_complexity 1 23 0 3 697 183 42 0 0 chr3L 14801351 14801375 -9742182 + (A)n Simple_repeat Simple_repeat 1 24 0 3 697 21 0 0 0 chr3L 14802464 14802485 -9741072 + AT_rich Low_complexity Low_complexity 1 21 0 3 697 22 35 0 0 chr3L 14803270 14803299 -9740258 + AT_rich Low_complexity Low_complexity 1 29 0 3 697 195 129 0 0 chr3L 14805754 14805785 -9737772 + (CATA)n Simple_repeat Simple_repeat 2 32 0 3 697 27 29 0 0 chr3L 14806285 14806319 -9737238 + AT_rich Low_complexity Low_complexity 1 34 0 3 697 25 51 0 0 chr3L 14807535 14807574 -9735983 + AT_rich Low_complexity Low_complexity 1 39 0 3 697 186 43 0 0 chr3L 14807906 14807929 -9735628 + (A)n Simple_repeat Simple_repeat 1 23 0 3 697 183 80 0 0 chr3L 14810900 14810925 -9732632 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 698 23 0 0 0 chr3L 14812075 14812098 -9731459 + AT_rich Low_complexity Low_complexity 1 23 0 3 698 21 36 0 0 chr3L 14812608 14812636 -9730921 + AT_rich Low_complexity Low_complexity 1 28 0 3 698 192 135 0 0 chr3L 14813147 14813184 -9730373 + (CAAAAA)n Simple_repeat Simple_repeat 1 37 0 3 698 309 109 0 0 chr3L 14814403 14814458 -9729099 + (ACTG)n Simple_repeat Simple_repeat 1 55 0 3 698 215 170 0 36 chr3L 14815631 14815686 -9727871 + (TTGGGG)n Simple_repeat Simple_repeat 2 54 0 3 698 22 0 0 0 chr3L 14816400 14816422 -9727135 + AT_rich Low_complexity Low_complexity 1 22 0 3 698 237 65 0 0 chr3L 14816953 14816984 -9726573 + (CTTTG)n Simple_repeat Simple_repeat 2 32 0 3 698 22 56 0 0 chr3L 14817177 14817213 -9726344 + AT_rich Low_complexity Low_complexity 1 36 0 3 698 216 200 0 0 chr3L 14817455 14817505 -9726052 + (CAGTT)n Simple_repeat Simple_repeat 4 53 0 3 698 3570 0 0 21 chr3L 14818280 14818713 -9724844 + Stalker2_LTR LTR Gypsy 1 424 0 3 698 51574 14 5 2 chr3L 14818713 14825517 -9718040 + Stalker2_I LTR Gypsy 1 6530 0 3 698 3570 0 0 21 chr3L 14825517 14825950 -9717607 + Stalker2_LTR LTR Gypsy 1 424 0 3 698 228 35 0 0 chr3L 14826296 14826325 -9717232 + (TG)n Simple_repeat Simple_repeat 1 29 0 3 698 189 0 0 0 chr3L 14826791 14826812 -9716745 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 698 24 0 0 0 chr3L 14827764 14827788 -9715769 + AT_rich Low_complexity Low_complexity 1 24 0 3 698 24 53 0 0 chr3L 14828400 14828438 -9715119 + AT_rich Low_complexity Low_complexity 1 38 0 3 698 228 67 0 0 chr3L 14828965 14828995 -9714562 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 698 27 0 0 0 chr3L 14829915 14829942 -9713615 + AT_rich Low_complexity Low_complexity 1 27 0 3 698 195 114 0 0 chr3L 14831572 14831607 -9711950 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 698 22 0 0 0 chr3L 14832099 14832121 -9711436 + AT_rich Low_complexity Low_complexity 1 22 0 3 698 32 0 0 0 chr3L 14832193 14832225 -9711332 + AT_rich Low_complexity Low_complexity 1 32 0 3 698 22 0 0 0 chr3L 14832241 14832263 -9711294 + AT_rich Low_complexity Low_complexity 1 22 0 3 698 23 0 0 0 chr3L 14835299 14835322 -9708235 + AT_rich Low_complexity Low_complexity 1 23 0 3 698 180 152 0 0 chr3L 14836763 14836796 -9706761 + (CAGT)n Simple_repeat Simple_repeat 1 33 0 3 698 21 36 0 0 chr3L 14837213 14837241 -9706316 + AT_rich Low_complexity Low_complexity 1 28 0 3 698 204 337 0 11 chr3L 14840965 14841055 -9702502 + (CATATA)n Simple_repeat Simple_repeat 4 92 0 3 698 208 200 22 0 chr3L 14840987 14841032 -9702525 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 698 21 0 0 0 chr3L 14841474 14841495 -9702062 + AT_rich Low_complexity Low_complexity 1 21 0 3 698 21 36 0 0 chr3L 14841777 14841805 -9701752 + AT_rich Low_complexity Low_complexity 1 28 0 3 698 273 98 0 0 chr3L 14845210 14845251 -9698306 + (TC)n Simple_repeat Simple_repeat 2 42 0 3 698 21 0 0 0 chr3L 14846008 14846029 -9697528 + AT_rich Low_complexity Low_complexity 1 21 0 3 698 25 0 0 0 chr3L 14847078 14847103 -9696454 + AT_rich Low_complexity Low_complexity 1 25 0 3 698 180 111 0 0 chr3L 14847556 14847583 -9695974 + (TGGG)n Simple_repeat Simple_repeat 3 29 0 3 698 186 43 0 0 chr3L 14847824 14847847 -9695710 + (TA)n Simple_repeat Simple_repeat 1 23 0 3 698 24 85 0 0 chr3L 14848118 14848177 -9695380 + AT_rich Low_complexity Low_complexity 1 59 0 3 698 22 35 0 0 chr3L 14849523 14849552 -9694005 + AT_rich Low_complexity Low_complexity 1 29 0 3 698 252 59 0 0 chr3L 14851922 14851956 -9691601 + (TTA)n Simple_repeat Simple_repeat 2 35 0 3 698 44 63 0 0 chr3L 14855823 14855902 -9687655 + AT_rich Low_complexity Low_complexity 1 79 0 3 698 23 68 0 0 chr3L 14855984 14856028 -9687529 + AT_rich Low_complexity Low_complexity 1 44 0 3 698 23 33 0 0 chr3L 14857271 14857301 -9686256 + AT_rich Low_complexity Low_complexity 1 30 0 3 698 253 273 0 26 chr3L 14862622 14862735 -9680822 + (CAG)n Simple_repeat Simple_repeat 1 110 0 3 698 29 47 0 0 chr3L 14864857 14864900 -9678657 + AT_rich Low_complexity Low_complexity 1 43 0 3 698 213 200 11 32 chr3L 14865264 14865357 -9678200 + (TTG)n Simple_repeat Simple_repeat 3 93 0 3 698 196 114 22 43 chr3L 14865400 14865446 -9678111 + (CTG)n Simple_repeat Simple_repeat 3 47 0 3 698 237 239 0 0 chr3L 14865584 14865655 -9677902 - ROO_I LTR Pao -7515 741 671 3 698 201 180 0 0 chr3L 14868341 14868391 -9675166 + A-rich Low_complexity Low_complexity 1 50 0 3 698 275 169 11 53 chr3L 14868910 14869004 -9674553 + ROO_I LTR Pao 643 732 -7524 3 698 21 0 0 0 chr3L 14871835 14871856 -9671701 + AT_rich Low_complexity Low_complexity 1 21 0 3 698 35 0 0 0 chr3L 14874120 14874155 -9669402 + AT_rich Low_complexity Low_complexity 1 35 0 3 698 183 156 0 0 chr3L 14874498 14874530 -9669027 + (CAG)n Simple_repeat Simple_repeat 2 33 0 3 698 315 104 0 0 chr3L 14874650 14874698 -9668859 + (CAG)n Simple_repeat Simple_repeat 3 50 0 3 698 191 191 10 60 chr3L 14874841 14874941 -9668616 + (CAA)n Simple_repeat Simple_repeat 3 97 0 3 698 236 53 0 26 chr3L 14874960 14874999 -9668558 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 698 211 304 0 0 chr3L 14875054 14875133 -9668424 + (CA)n Simple_repeat Simple_repeat 2 80 0 3 698 207 0 0 0 chr3L 14875886 14875909 -9667648 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 698 24 0 0 0 chr3L 14876579 14876603 -9666954 + AT_rich Low_complexity Low_complexity 1 24 0 3 698 300 127 0 0 chr3L 14881118 14881173 -9662384 + (GA)n Simple_repeat Simple_repeat 2 56 0 3 698 23 68 0 0 chr3L 14881227 14881271 -9662286 + AT_rich Low_complexity Low_complexity 1 44 0 3 698 27 49 0 0 chr3L 14883667 14883708 -9659849 + AT_rich Low_complexity Low_complexity 1 41 0 3 698 207 0 0 0 chr3L 14884260 14884283 -9659274 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 698 183 186 0 0 chr3L 14885907 14885950 -9657607 + (CTG)n Simple_repeat Simple_repeat 3 45 0 3 698 21 0 0 0 chr3L 14888335 14888356 -9655201 + AT_rich Low_complexity Low_complexity 1 21 0 3 698 210 128 0 0 chr3L 14888580 14888619 -9654938 + (CA)n Simple_repeat Simple_repeat 2 40 0 3 698 34 65 0 0 chr3L 14889741 14889803 -9653754 + AT_rich Low_complexity Low_complexity 1 62 0 3 698 21 36 0 0 chr3L 14891250 14891278 -9652279 + AT_rich Low_complexity Low_complexity 1 28 0 3 698 243 250 0 0 chr3L 14892305 14892365 -9651192 + (TG)n Simple_repeat Simple_repeat 2 61 0 3 698 22 0 0 0 chr3L 14892837 14892859 -9650698 + AT_rich Low_complexity Low_complexity 1 22 0 3 698 195 146 0 0 chr3L 14894740 14894781 -9648776 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 698 195 42 0 0 chr3L 14896188 14896212 -9647345 + (CAAGG)n Simple_repeat Simple_repeat 5 28 0 3 698 291 343 0 0 chr3L 14897419 14897518 -9646039 + (CAG)n Simple_repeat Simple_repeat 1 99 0 3 698 38 39 0 0 chr3L 14903025 14903077 -9640480 + AT_rich Low_complexity Low_complexity 1 52 0 3 698 194 45 91 0 chr3L 14904027 14904071 -9639486 + (TA)n Simple_repeat Simple_repeat 2 49 0 3 698 250 179 0 35 chr3L 14908170 14908257 -9635300 + (TTG)n Simple_repeat Simple_repeat 1 84 0 3 698 21 0 0 0 chr3L 14908971 14908992 -9634565 + AT_rich Low_complexity Low_complexity 1 21 0 3 698 25 31 0 0 chr3L 14911315 14911347 -9632210 + AT_rich Low_complexity Low_complexity 1 32 0 3 698 42 77 0 0 chr3L 14911390 14911481 -9632076 + AT_rich Low_complexity Low_complexity 1 91 0 3 698 47 0 0 0 chr3L 14912141 14912188 -9631369 + AT_rich Low_complexity Low_complexity 1 47 0 3 698 240 238 0 0 chr3L 14912270 14912333 -9631224 + DNAREP1_DM LINE Penelope 381 443 -151 3 698 37 23 0 0 chr3L 14918422 14918466 -9625091 + AT_rich Low_complexity Low_complexity 1 44 0 3 698 21 57 0 0 chr3L 14920250 14920285 -9623272 + AT_rich Low_complexity Low_complexity 1 35 0 3 698 25 31 0 0 chr3L 14922149 14922181 -9621376 + AT_rich Low_complexity Low_complexity 1 32 0 3 698 180 214 0 0 chr3L 14922992 14923048 -9620509 + (CGAAA)n Simple_repeat Simple_repeat 3 58 0 3 698 21 36 0 0 chr3L 14923066 14923094 -9620463 + AT_rich Low_complexity Low_complexity 1 28 0 3 698 21 0 0 0 chr3L 14924498 14924519 -9619038 + AT_rich Low_complexity Low_complexity 1 21 0 3 698 23 54 0 0 chr3L 14924576 14924613 -9618944 + AT_rich Low_complexity Low_complexity 1 37 0 3 698 26 50 0 0 chr3L 14926541 14926581 -9616976 + AT_rich Low_complexity Low_complexity 1 40 0 3 698 204 111 0 0 chr3L 14927331 14927367 -9616190 + (CAACC)n Simple_repeat Simple_repeat 2 37 0 3 698 186 133 0 0 chr3L 14928179 14928209 -9615348 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 698 25 31 0 0 chr3L 14930654 14930686 -9612871 + AT_rich Low_complexity Low_complexity 1 32 0 3 698 23 0 0 0 chr3L 14932474 14932497 -9611060 + AT_rich Low_complexity Low_complexity 1 23 0 3 698 24 0 0 0 chr3L 14934563 14934587 -9608970 + AT_rich Low_complexity Low_complexity 1 24 0 3 698 27 62 0 0 chr3L 14938107 14938155 -9605402 + AT_rich Low_complexity Low_complexity 1 48 0 3 698 21 36 0 0 chr3L 14940099 14940127 -9603430 + AT_rich Low_complexity Low_complexity 1 28 0 3 698 182 37 0 36 chr3L 14941696 14941724 -9601833 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 699 1074 61 0 0 chr3L 14944234 14944382 -9599175 - TRANSIB2 DNA Transib -325 2519 2372 3 699 477 0 59 0 chr3L 14944373 14944441 -9599116 - TRANSIB2 DNA Transib -2762 82 11 3 699 513 217 156 72 chr3L 14944839 14945102 -9598455 - DNAREP1_DM LINE Penelope -59 535 251 3 699 27 29 0 0 chr3L 14946052 14946086 -9597471 + AT_rich Low_complexity Low_complexity 1 34 0 3 699 28 48 0 0 chr3L 14946180 14946222 -9597335 + AT_rich Low_complexity Low_complexity 1 42 0 3 699 9374 26 0 4 chr3L 14947521 14948695 -9594862 + TRANSIB2 DNA Transib 1 1169 -1675 3 699 3500 23 5 0 chr3L 14948694 14949132 -9594425 + TRANSIB2 DNA Transib 2405 2844 0 3 699 26 0 0 0 chr3L 14950781 14950807 -9592750 + AT_rich Low_complexity Low_complexity 1 26 0 3 699 360 164 0 0 chr3L 14950813 14950880 -9592677 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 699 22 80 0 0 chr3L 14951056 14951106 -9592451 + AT_rich Low_complexity Low_complexity 1 50 0 3 699 22 0 0 0 chr3L 14951164 14951186 -9592371 + AT_rich Low_complexity Low_complexity 1 22 0 3 699 23 0 0 0 chr3L 14952661 14952684 -9590873 + AT_rich Low_complexity Low_complexity 1 23 0 3 699 25 90 0 0 chr3L 14952752 14952819 -9590738 + AT_rich Low_complexity Low_complexity 1 67 0 3 699 210 153 0 48 chr3L 14954210 14954272 -9589285 + A-rich Low_complexity Low_complexity 6 64 0 3 699 23 0 0 0 chr3L 14955043 14955066 -9588491 + AT_rich Low_complexity Low_complexity 1 23 0 3 699 22 0 0 0 chr3L 14957907 14957929 -9585628 + AT_rich Low_complexity Low_complexity 1 22 0 3 699 21 36 0 0 chr3L 14958692 14958720 -9584837 + AT_rich Low_complexity Low_complexity 1 28 0 3 699 26 30 0 0 chr3L 14961882 14961915 -9581642 + AT_rich Low_complexity Low_complexity 1 33 0 3 699 24 53 0 0 chr3L 14962088 14962126 -9581431 + AT_rich Low_complexity Low_complexity 1 38 0 3 699 22 56 0 0 chr3L 14963830 14963866 -9579691 + AT_rich Low_complexity Low_complexity 1 36 0 3 699 2065 4 0 0 chr3L 14963919 14964164 -9579393 + FW_DM LINE Jockey 4442 4686 -6 3 699 24 0 0 0 chr3L 14964275 14964299 -9579258 + AT_rich Low_complexity Low_complexity 1 24 0 3 699 26 107 0 0 chr3L 14966976 14967079 -9576478 + AT_rich Low_complexity Low_complexity 1 103 0 3 699 21 57 0 0 chr3L 14967092 14967127 -9576430 + AT_rich Low_complexity Low_complexity 1 35 0 3 699 29 28 0 0 chr3L 14967313 14967349 -9576208 + AT_rich Low_complexity Low_complexity 1 36 0 3 699 27 0 0 0 chr3L 14969700 14969727 -9573830 + AT_rich Low_complexity Low_complexity 1 27 0 3 699 203 250 0 0 chr3L 14970817 14970873 -9572684 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 699 27 49 0 0 chr3L 14971420 14971461 -9572096 + AT_rich Low_complexity Low_complexity 1 41 0 3 699 28 61 0 0 chr3L 14978758 14978807 -9564750 + AT_rich Low_complexity Low_complexity 1 49 0 3 699 28 0 0 0 chr3L 14984876 14984904 -9558653 + AT_rich Low_complexity Low_complexity 1 28 0 3 699 22 35 0 0 chr3L 14990799 14990828 -9552729 + AT_rich Low_complexity Low_complexity 1 29 0 3 699 32 0 0 0 chr3L 14994621 14994653 -9548904 + AT_rich Low_complexity Low_complexity 1 32 0 3 699 50 31 0 0 chr3L 14995735 14995799 -9547758 + AT_rich Low_complexity Low_complexity 1 64 0 3 699 180 0 0 0 chr3L 14998648 14998668 -9544889 + (A)n Simple_repeat Simple_repeat 1 20 0 3 699 21 0 0 0 chr3L 15001212 15001233 -9542324 + AT_rich Low_complexity Low_complexity 1 21 0 3 699 21 36 0 0 chr3L 15001724 15001752 -9541805 + AT_rich Low_complexity Low_complexity 1 28 0 3 699 27 29 0 0 chr3L 15002882 15002916 -9540641 + AT_rich Low_complexity Low_complexity 1 34 0 3 699 24 53 0 0 chr3L 15004888 15004926 -9538631 + AT_rich Low_complexity Low_complexity 1 38 0 3 699 29 28 0 0 chr3L 15005417 15005453 -9538104 + AT_rich Low_complexity Low_complexity 1 36 0 3 699 30 0 0 0 chr3L 15005635 15005665 -9537892 + AT_rich Low_complexity Low_complexity 1 30 0 3 699 21 36 0 0 chr3L 15005820 15005848 -9537709 + AT_rich Low_complexity Low_complexity 1 28 0 3 699 21 57 0 0 chr3L 15007314 15007349 -9536208 + AT_rich Low_complexity Low_complexity 1 35 0 3 699 23 33 0 0 chr3L 15007388 15007418 -9536139 + AT_rich Low_complexity Low_complexity 1 30 0 3 699 29 47 0 0 chr3L 15007480 15007523 -9536034 + AT_rich Low_complexity Low_complexity 1 43 0 3 699 189 0 0 0 chr3L 15008919 15008940 -9534617 + (TTA)n Simple_repeat Simple_repeat 2 22 0 3 699 290 115 19 0 chr3L 15009317 15009369 -9534188 + (TA)n Simple_repeat Simple_repeat 1 53 0 3 699 225 94 0 0 chr3L 15009752 15009784 -9533773 + (GAGTG)n Simple_repeat Simple_repeat 2 33 0 3 699 22 0 0 0 chr3L 15010137 15010159 -9533398 + AT_rich Low_complexity Low_complexity 1 22 0 3 699 34 84 0 0 chr3L 15011135 15011218 -9532339 + AT_rich Low_complexity Low_complexity 1 83 0 3 699 186 103 0 0 chr3L 15019044 15019073 -9524484 + (CGGA)n Simple_repeat Simple_repeat 3 31 0 3 699 234 0 0 0 chr3L 15019807 15019833 -9523724 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 699 21 57 0 0 chr3L 15019856 15019891 -9523666 + AT_rich Low_complexity Low_complexity 1 35 0 3 699 25 0 0 0 chr3L 15020027 15020052 -9523505 + AT_rich Low_complexity Low_complexity 1 25 0 3 699 23 0 0 0 chr3L 15022310 15022333 -9521224 + AT_rich Low_complexity Low_complexity 1 23 0 3 699 43 20 0 0 chr3L 15023727 15023777 -9519780 + AT_rich Low_complexity Low_complexity 1 50 0 3 699 183 156 0 0 chr3L 15025019 15025051 -9518506 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 699 210 158 0 0 chr3L 15026778 15026816 -9516741 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 699 27 87 0 0 chr3L 15027574 15027643 -9515914 + AT_rich Low_complexity Low_complexity 1 69 0 3 699 30 0 0 0 chr3L 15029470 15029500 -9514057 + AT_rich Low_complexity Low_complexity 1 30 0 3 699 23 68 0 0 chr3L 15031056 15031100 -9512457 + AT_rich Low_complexity Low_complexity 1 44 0 3 699 467 82 0 14 chr3L 15036695 15036769 -9506788 + (CTG)n Simple_repeat Simple_repeat 1 73 0 3 699 29 60 0 0 chr3L 15037549 15037599 -9505958 + AT_rich Low_complexity Low_complexity 1 50 0 3 699 21 0 0 0 chr3L 15037622 15037643 -9505914 + AT_rich Low_complexity Low_complexity 1 21 0 3 699 21 0 0 0 chr3L 15039920 15039941 -9503616 + AT_rich Low_complexity Low_complexity 1 21 0 3 699 183 129 0 0 chr3L 15040215 15040246 -9503311 + (T)n Simple_repeat Simple_repeat 1 31 0 3 699 22 88 0 0 chr3L 15041050 15041107 -9502450 + AT_rich Low_complexity Low_complexity 1 57 0 3 699 267 200 0 0 chr3L 15045809 15045864 -9497693 - DNAREP1_DM LINE Penelope -538 56 2 3 699 343 143 0 14 chr3L 15049194 15049265 -9494292 + Transib-N1_DM DNA Transib 46 115 -399 3 699 490 53 0 0 chr3L 15049455 15049530 -9494027 + BS LINE Jockey 5020 5094 -32 3 699 39 60 0 0 chr3L 15052036 15052103 -9491454 + AT_rich Low_complexity Low_complexity 1 67 0 3 699 29 0 0 0 chr3L 15054129 15054158 -9489399 + AT_rich Low_complexity Low_complexity 1 29 0 3 699 23 54 0 0 chr3L 15055217 15055254 -9488303 + AT_rich Low_complexity Low_complexity 1 37 0 3 699 29 90 0 0 chr3L 15058395 15058473 -9485084 + AT_rich Low_complexity Low_complexity 1 78 0 3 699 22 56 0 0 chr3L 15063764 15063800 -9479757 + AT_rich Low_complexity Low_complexity 1 36 0 3 699 26 30 0 0 chr3L 15064926 15064959 -9478598 + AT_rich Low_complexity Low_complexity 1 33 0 3 699 32 43 0 0 chr3L 15065135 15065181 -9478376 + AT_rich Low_complexity Low_complexity 1 46 0 3 699 21 0 0 0 chr3L 15066604 15066625 -9476932 + AT_rich Low_complexity Low_complexity 1 21 0 3 699 240 35 0 0 chr3L 15067244 15067273 -9476284 + (TAA)n Simple_repeat Simple_repeat 2 30 0 3 699 42 36 0 0 chr3L 15069884 15069940 -9473617 + AT_rich Low_complexity Low_complexity 1 56 0 3 700 229 326 11 11 chr3L 15077095 15077188 -9466369 + (TCG)n Simple_repeat Simple_repeat 2 94 0 3 700 23 33 0 0 chr3L 15077894 15077924 -9465633 + AT_rich Low_complexity Low_complexity 1 30 0 3 700 9450 28 0 1 chr3L 15078206 15079312 -9464245 + PROTOP_A DNA P 1 1105 0 3 700 30 0 0 0 chr3L 15080186 15080216 -9463341 + AT_rich Low_complexity Low_complexity 1 30 0 3 700 22 70 0 0 chr3L 15082157 15082200 -9461357 + AT_rich Low_complexity Low_complexity 1 43 0 3 700 40 21 0 0 chr3L 15082555 15082602 -9460955 + AT_rich Low_complexity Low_complexity 1 47 0 3 700 31 0 0 0 chr3L 15083920 15083951 -9459606 + AT_rich Low_complexity Low_complexity 1 31 0 3 700 213 222 0 0 chr3L 15086209 15086272 -9457285 + (TTG)n Simple_repeat Simple_repeat 1 63 0 3 700 211 191 28 42 chr3L 15087264 15087335 -9456222 + A-rich Low_complexity Low_complexity 6 75 0 3 700 43 0 0 0 chr3L 15087984 15088027 -9455530 + AT_rich Low_complexity Low_complexity 1 43 0 3 700 23 33 0 0 chr3L 15088118 15088148 -9455409 + AT_rich Low_complexity Low_complexity 1 30 0 3 700 25 83 0 0 chr3L 15090717 15090777 -9452780 + AT_rich Low_complexity Low_complexity 1 60 0 3 700 31 0 0 0 chr3L 15090876 15090907 -9452650 + AT_rich Low_complexity Low_complexity 1 31 0 3 700 27 29 0 0 chr3L 15091975 15092009 -9451548 + AT_rich Low_complexity Low_complexity 1 34 0 3 700 183 156 0 0 chr3L 15095007 15095039 -9448518 + (CTG)n Simple_repeat Simple_repeat 1 32 0 3 700 21 71 0 0 chr3L 15095542 15095584 -9447973 + AT_rich Low_complexity Low_complexity 1 42 0 3 700 22 94 0 0 chr3L 15096629 15096693 -9446864 + AT_rich Low_complexity Low_complexity 1 64 0 3 700 228 174 48 58 chr3L 15098467 15098571 -9444986 + (GCTG)n Simple_repeat Simple_repeat 2 104 0 3 700 217 271 0 0 chr3L 15098789 15098848 -9444709 + G-rich Low_complexity Low_complexity 6 64 0 3 700 324 244 22 11 chr3L 15098858 15098949 -9444608 + (CAG)n Simple_repeat Simple_repeat 3 94 0 3 700 183 100 0 0 chr3L 15100581 15100611 -9442946 + (CTCTG)n Simple_repeat Simple_repeat 5 34 0 3 700 38 68 0 0 chr3L 15102108 15102181 -9441376 + AT_rich Low_complexity Low_complexity 1 73 0 3 700 26 0 0 0 chr3L 15102267 15102293 -9441264 + AT_rich Low_complexity Low_complexity 1 26 0 3 700 21 71 0 0 chr3L 15106025 15106067 -9437490 + AT_rich Low_complexity Low_complexity 1 42 0 3 700 382 154 0 0 chr3L 15107669 15107734 -9435823 - DNAREP1_DM LINE Penelope -1 593 529 3 700 421 174 0 0 chr3L 15107775 15107844 -9435713 - DNAREP1_DM LINE Penelope -525 69 1 3 700 21 36 0 0 chr3L 15109563 15109591 -9433966 + AT_rich Low_complexity Low_complexity 1 28 0 3 700 26 30 0 0 chr3L 15120071 15120104 -9423453 + AT_rich Low_complexity Low_complexity 1 33 0 3 700 36 0 0 0 chr3L 15130178 15130214 -9413343 + AT_rich Low_complexity Low_complexity 1 36 0 3 700 22 35 0 0 chr3L 15133018 15133047 -9410510 + AT_rich Low_complexity Low_complexity 1 29 0 3 700 21 100 0 0 chr3L 15135881 15135951 -9407606 + AT_rich Low_complexity Low_complexity 1 70 0 3 700 33 25 0 0 chr3L 15136069 15136109 -9407448 + AT_rich Low_complexity Low_complexity 1 40 0 3 700 453 86 0 0 chr3L 15139727 15139785 -9403772 - DNAREP1_DM LINE Penelope -535 59 2 3 700 21 0 0 0 chr3L 15140319 15140340 -9403217 + AT_rich Low_complexity Low_complexity 1 21 0 3 700 29 0 0 0 chr3L 15141887 15141916 -9401641 + AT_rich Low_complexity Low_complexity 1 29 0 3 700 25 0 0 0 chr3L 15147452 15147477 -9396080 + AT_rich Low_complexity Low_complexity 1 25 0 3 700 30 45 0 0 chr3L 15154752 15154796 -9388761 + AT_rich Low_complexity Low_complexity 1 44 0 3 700 23 78 0 0 chr3L 15157035 15157086 -9386471 + AT_rich Low_complexity Low_complexity 1 51 0 3 700 243 200 42 14 chr3L 15158151 15158222 -9385335 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 3 700 224 305 0 0 chr3L 15161278 15161337 -9382220 + (CCG)n Simple_repeat Simple_repeat 1 59 0 3 700 41 21 0 0 chr3L 15161517 15161565 -9381992 + AT_rich Low_complexity Low_complexity 1 48 0 3 700 26 0 0 0 chr3L 15161671 15161697 -9381860 + AT_rich Low_complexity Low_complexity 1 26 0 3 700 273 57 0 0 chr3L 15162089 15162124 -9381433 + (CAACT)n Simple_repeat Simple_repeat 2 36 0 3 700 252 0 0 0 chr3L 15162290 15162318 -9381239 + (CAGT)n Simple_repeat Simple_repeat 3 30 0 3 700 229 0 83 0 chr3L 15163038 15163074 -9380483 + (TTTG)n Simple_repeat Simple_repeat 3 41 0 3 700 484 139 0 0 chr3L 15165645 15165724 -9377833 - DNAREP1_DM LINE Penelope -155 439 361 3 700 327 154 0 0 chr3L 15165779 15165831 -9377726 - DNAREP1_DM LINE Penelope -535 59 8 3 700 23 78 0 0 chr3L 15167305 15167356 -9376201 + AT_rich Low_complexity Low_complexity 1 51 0 3 700 28 86 0 0 chr3L 15168024 15168094 -9375463 + AT_rich Low_complexity Low_complexity 1 70 0 3 700 231 184 0 0 chr3L 15168430 15168468 -9375089 + (TTGGGG)n Simple_repeat Simple_repeat 4 41 0 3 700 228 176 13 63 chr3L 15168555 15168634 -9374923 + (TTG)n Simple_repeat Simple_repeat 1 75 0 3 700 22 0 0 0 chr3L 15169248 15169270 -9374287 + AT_rich Low_complexity Low_complexity 1 22 0 3 700 23 0 0 0 chr3L 15170432 15170455 -9373102 + AT_rich Low_complexity Low_complexity 1 23 0 3 700 195 42 0 0 chr3L 15171920 15171944 -9371613 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 700 23 0 0 0 chr3L 15172638 15172661 -9370896 + AT_rich Low_complexity Low_complexity 1 23 0 3 700 24 49 0 47 chr3L 15177864 15177928 -9365629 + AT_rich Low_complexity Low_complexity 1 61 0 3 700 206 150 0 24 chr3L 15178525 15178566 -9364991 + (GTTTG)n Simple_repeat Simple_repeat 2 41 0 3 700 24 0 0 0 chr3L 15179089 15179113 -9364444 + AT_rich Low_complexity Low_complexity 1 24 0 3 700 201 167 0 0 chr3L 15179712 15179748 -9363809 + T-rich Low_complexity Low_complexity 1 36 0 3 700 24 53 0 0 chr3L 15182136 15182174 -9361383 + AT_rich Low_complexity Low_complexity 1 38 0 3 700 25 0 0 0 chr3L 15184166 15184191 -9359366 + AT_rich Low_complexity Low_complexity 1 25 0 3 700 23 0 0 0 chr3L 15184776 15184799 -9358758 + AT_rich Low_complexity Low_complexity 1 23 0 3 700 21 36 0 0 chr3L 15190012 15190040 -9353517 + AT_rich Low_complexity Low_complexity 1 28 0 3 700 198 118 0 0 chr3L 15190490 15190524 -9353033 + (GATTG)n Simple_repeat Simple_repeat 4 37 0 3 700 180 179 0 0 chr3L 15191181 15191220 -9352337 + (GAATG)n Simple_repeat Simple_repeat 5 43 0 3 700 182 150 0 24 chr3L 15192934 15192975 -9350582 + (TTG)n Simple_repeat Simple_repeat 2 41 0 3 700 203 189 0 0 chr3L 15193098 15193135 -9350422 + T-rich Low_complexity Low_complexity 1 37 0 3 700 24 0 0 0 chr3L 15197075 15197099 -9346458 + AT_rich Low_complexity Low_complexity 1 24 0 3 700 23 33 0 0 chr3L 15197441 15197471 -9346086 + AT_rich Low_complexity Low_complexity 1 30 0 3 700 207 69 0 0 chr3L 15199453 15199482 -9344075 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 3 700 23 0 0 0 chr3L 15200429 15200452 -9343105 + AT_rich Low_complexity Low_complexity 1 23 0 3 700 25 0 0 0 chr3L 15202357 15202382 -9341175 + AT_rich Low_complexity Low_complexity 1 25 0 3 700 24 0 0 0 chr3L 15203227 15203251 -9340306 + AT_rich Low_complexity Low_complexity 1 24 0 3 700 34 79 0 0 chr3L 15204099 15204175 -9339382 + AT_rich Low_complexity Low_complexity 1 76 0 3 701 534 146 0 0 chr3L 15205058 15205154 -9338403 + (CAA)n Simple_repeat Simple_repeat 1 96 0 3 701 27 0 0 0 chr3L 15207989 15208016 -9335541 + AT_rich Low_complexity Low_complexity 1 27 0 3 701 256 167 0 115 chr3L 15210520 15210642 -9332915 + ROO_I LTR Pao 633 740 -7516 3 701 26 0 0 0 chr3L 15212190 15212216 -9331341 + AT_rich Low_complexity Low_complexity 1 26 0 3 701 228 100 0 0 chr3L 15213308 15213348 -9330209 + (GATTG)n Simple_repeat Simple_repeat 1 40 0 3 701 24 32 0 0 chr3L 15215150 15215181 -9328376 + AT_rich Low_complexity Low_complexity 1 31 0 3 701 21 71 0 0 chr3L 15215999 15216041 -9327516 + AT_rich Low_complexity Low_complexity 1 42 0 3 701 243 103 0 0 chr3L 15216740 15216779 -9326778 + (TTCTCC)n Simple_repeat Simple_repeat 6 44 0 3 701 195 242 0 0 chr3L 15218354 15218416 -9325141 + (CAA)n Simple_repeat Simple_repeat 1 62 0 3 701 277 145 26 0 chr3L 15218569 15218645 -9324912 + (CATCC)n Simple_repeat Simple_repeat 2 79 0 3 701 264 100 0 0 chr3L 15218714 15218754 -9324803 + (ATGTG)n Simple_repeat Simple_repeat 3 42 0 3 701 31 68 0 0 chr3L 15219618 15219677 -9323880 + AT_rich Low_complexity Low_complexity 1 59 0 3 701 369 143 0 35 chr3L 15219878 15219965 -9323592 - ROO_I LTR Pao -7517 739 656 3 701 218 179 0 18 chr3L 15220038 15220095 -9323462 + (CAG)n Simple_repeat Simple_repeat 3 58 0 3 701 21 0 0 0 chr3L 15220455 15220476 -9323081 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 189 0 0 0 chr3L 15220503 15220524 -9323033 + (CAGGC)n Simple_repeat Simple_repeat 3 23 0 3 701 210 91 0 0 chr3L 15220961 15220994 -9322563 + (A)n Simple_repeat Simple_repeat 1 33 0 3 701 270 116 0 0 chr3L 15223083 15223126 -9320431 + (CTG)n Simple_repeat Simple_repeat 2 44 0 3 701 22 0 0 0 chr3L 15224363 15224385 -9319172 + AT_rich Low_complexity Low_complexity 1 22 0 3 701 25 65 0 0 chr3L 15225706 15225752 -9317805 + AT_rich Low_complexity Low_complexity 1 46 0 3 701 264 143 0 0 chr3L 15226239 15226295 -9317262 + (CATCC)n Simple_repeat Simple_repeat 5 60 0 3 701 45 34 0 0 chr3L 15228001 15228060 -9315497 + AT_rich Low_complexity Low_complexity 1 59 0 3 701 243 231 0 0 chr3L 15228609 15228661 -9314896 + (CTCA)n Simple_repeat Simple_repeat 1 52 0 3 701 239 244 0 62 chr3L 15233024 15233120 -9310437 + ROO_I LTR Pao 632 721 -7535 3 701 22 0 0 0 chr3L 15233944 15233966 -9309591 + AT_rich Low_complexity Low_complexity 1 22 0 3 701 23 33 0 0 chr3L 15235749 15235779 -9307778 + AT_rich Low_complexity Low_complexity 1 30 0 3 701 234 128 0 0 chr3L 15239307 15239346 -9304211 + (CACCAT)n Simple_repeat Simple_repeat 3 41 0 3 701 243 122 0 0 chr3L 15240554 15240603 -9302954 + (CATCC)n Simple_repeat Simple_repeat 2 50 0 3 701 211 197 15 29 chr3L 15242105 15242173 -9301384 + (TTAGGC)n Simple_repeat Simple_repeat 1 67 0 3 701 186 133 0 0 chr3L 15242661 15242691 -9300866 + (GATTG)n Simple_repeat Simple_repeat 1 30 0 3 701 26 0 0 0 chr3L 15242699 15242725 -9300832 + AT_rich Low_complexity Low_complexity 1 26 0 3 701 189 107 0 0 chr3L 15242783 15242811 -9300746 + (ATTCG)n Simple_repeat Simple_repeat 3 30 0 3 701 26 0 0 0 chr3L 15243135 15243161 -9300396 + AT_rich Low_complexity Low_complexity 1 26 0 3 701 234 81 0 0 chr3L 15243720 15243757 -9299800 + (T)n Simple_repeat Simple_repeat 1 37 0 3 701 200 222 0 0 chr3L 15248998 15249043 -9294514 + T-rich Low_complexity Low_complexity 1 45 0 3 701 24 32 0 0 chr3L 15249657 15249688 -9293869 + AT_rich Low_complexity Low_complexity 1 31 0 3 701 22 0 0 0 chr3L 15250507 15250529 -9293028 + AT_rich Low_complexity Low_complexity 1 22 0 3 701 282 73 0 0 chr3L 15251317 15251358 -9292199 + (CAA)n Simple_repeat Simple_repeat 1 41 0 3 701 33 0 0 0 chr3L 15257090 15257123 -9286434 + AT_rich Low_complexity Low_complexity 1 33 0 3 701 30 0 0 0 chr3L 15257886 15257916 -9285641 + AT_rich Low_complexity Low_complexity 1 30 0 3 701 182 183 0 32 chr3L 15258163 15258225 -9285332 + (CAG)n Simple_repeat Simple_repeat 3 62 0 3 701 234 128 0 0 chr3L 15258234 15258273 -9285284 + (TCG)n Simple_repeat Simple_repeat 1 39 0 3 701 25 0 0 0 chr3L 15259939 15259964 -9283593 + AT_rich Low_complexity Low_complexity 1 25 0 3 701 26 30 0 0 chr3L 15260726 15260759 -9282798 + AT_rich Low_complexity Low_complexity 1 33 0 3 701 24 0 0 0 chr3L 15261432 15261456 -9282101 + AT_rich Low_complexity Low_complexity 1 24 0 3 701 30 45 0 0 chr3L 15263291 15263335 -9280222 + AT_rich Low_complexity Low_complexity 1 44 0 3 701 246 81 0 0 chr3L 15265879 15265916 -9277641 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 701 27 0 0 0 chr3L 15268643 15268670 -9274887 + AT_rich Low_complexity Low_complexity 1 27 0 3 701 231 61 0 0 chr3L 15269010 15269043 -9274514 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 701 195 170 0 0 chr3L 15269153 15269200 -9274357 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 701 27 62 0 0 chr3L 15273800 15273848 -9269709 + AT_rich Low_complexity Low_complexity 1 48 0 3 701 204 77 103 0 chr3L 15274852 15274891 -9268666 + (CTTA)n Simple_repeat Simple_repeat 4 46 0 3 701 37 0 0 0 chr3L 15274929 15274966 -9268591 + AT_rich Low_complexity Low_complexity 1 37 0 3 701 237 65 0 0 chr3L 15275890 15275921 -9267636 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 701 24 0 0 0 chr3L 15277933 15277957 -9265600 + AT_rich Low_complexity Low_complexity 1 24 0 3 701 29 70 0 0 chr3L 15280336 15280393 -9263164 + AT_rich Low_complexity Low_complexity 1 57 0 3 701 23 0 0 0 chr3L 15281563 15281586 -9261971 + AT_rich Low_complexity Low_complexity 1 23 0 3 701 25 0 0 0 chr3L 15283224 15283249 -9260308 + AT_rich Low_complexity Low_complexity 1 25 0 3 701 22 70 0 0 chr3L 15284061 15284104 -9259453 + AT_rich Low_complexity Low_complexity 1 43 0 3 701 3892 7 0 0 chr3L 15288922 15289352 -9254205 - Gypsy5_LTR LTR Gypsy 0 430 1 3 701 8893 7 11 0 chr3L 15289352 15290375 -9253182 - Gypsy5_I LTR Gypsy 0 6509 5506 3 701 22 0 0 0 chr3L 15290951 15290973 -9252584 + AT_rich Low_complexity Low_complexity 1 22 0 3 701 439 20 0 0 chr3L 15291229 15291278 -9252279 - Gypsy5_I LTR Gypsy -6460 49 1 3 701 3892 7 0 0 chr3L 15291278 15291708 -9251849 - Gypsy5_LTR LTR Gypsy 0 430 1 3 701 28 48 0 0 chr3L 15296506 15296548 -9247009 + AT_rich Low_complexity Low_complexity 1 42 0 3 701 44 46 0 0 chr3L 15298163 15298228 -9245329 + AT_rich Low_complexity Low_complexity 1 65 0 3 701 27 49 0 0 chr3L 15300351 15300392 -9243165 + AT_rich Low_complexity Low_complexity 1 41 0 3 701 25 75 0 0 chr3L 15304680 15304733 -9238824 + AT_rich Low_complexity Low_complexity 1 53 0 3 701 24 0 0 0 chr3L 15307132 15307156 -9236401 + AT_rich Low_complexity Low_complexity 1 24 0 3 701 48 32 0 0 chr3L 15310713 15310775 -9232782 + AT_rich Low_complexity Low_complexity 1 62 0 3 701 22 70 0 0 chr3L 15311264 15311307 -9232250 + AT_rich Low_complexity Low_complexity 1 43 0 3 701 21 0 0 0 chr3L 15311325 15311346 -9232211 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 27 29 0 0 chr3L 15312011 15312045 -9231512 + AT_rich Low_complexity Low_complexity 1 34 0 3 701 22 80 0 0 chr3L 15316985 15317035 -9226522 + AT_rich Low_complexity Low_complexity 1 50 0 3 701 207 0 0 0 chr3L 15317536 15317559 -9225998 + (A)n Simple_repeat Simple_repeat 1 23 0 3 701 28 0 0 0 chr3L 15319864 15319892 -9223665 + AT_rich Low_complexity Low_complexity 1 28 0 3 701 22 0 0 0 chr3L 15320038 15320060 -9223497 + AT_rich Low_complexity Low_complexity 1 22 0 3 701 21 0 0 0 chr3L 15322641 15322662 -9220895 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 21 0 0 0 chr3L 15323465 15323486 -9220071 + AT_rich Low_complexity Low_complexity 1 21 0 3 701 24 67 0 0 chr3L 15324394 15324439 -9219118 + AT_rich Low_complexity Low_complexity 1 45 0 3 701 22 35 0 0 chr3L 15329208 15329237 -9214320 + AT_rich Low_complexity Low_complexity 1 29 0 3 701 23 0 0 0 chr3L 15335070 15335093 -9208464 + AT_rich Low_complexity Low_complexity 1 23 0 3 701 29 47 0 0 chr3L 15335207 15335250 -9208307 + AT_rich Low_complexity Low_complexity 1 43 0 3 702 359 106 15 0 chr3L 15335663 15335729 -9207828 + (TA)n Simple_repeat Simple_repeat 2 68 0 3 702 24 67 0 0 chr3L 15336542 15336587 -9206970 + AT_rich Low_complexity Low_complexity 1 45 0 3 702 25 75 0 0 chr3L 15340381 15340434 -9203123 + AT_rich Low_complexity Low_complexity 1 53 0 3 702 260 175 16 0 chr3L 15340866 15340929 -9202628 + (TTTG)n Simple_repeat Simple_repeat 2 65 0 3 702 25 0 0 0 chr3L 15341286 15341311 -9202246 + AT_rich Low_complexity Low_complexity 1 25 0 3 702 30 69 0 0 chr3L 15342687 15342745 -9200812 + AT_rich Low_complexity Low_complexity 1 58 0 3 702 226 148 65 16 chr3L 15343068 15343130 -9200427 + (TTTAA)n Simple_repeat Simple_repeat 3 67 0 3 702 22 0 0 0 chr3L 15343322 15343344 -9200213 + AT_rich Low_complexity Low_complexity 1 22 0 3 702 28 29 0 0 chr3L 15343393 15343428 -9200129 + AT_rich Low_complexity Low_complexity 1 35 0 3 702 22 70 0 0 chr3L 15346412 15346455 -9197102 + AT_rich Low_complexity Low_complexity 1 43 0 3 702 23 0 0 0 chr3L 15347751 15347774 -9195783 + AT_rich Low_complexity Low_complexity 1 23 0 3 702 23 0 0 0 chr3L 15348389 15348412 -9195145 + AT_rich Low_complexity Low_complexity 1 23 0 3 702 29 0 0 0 chr3L 15349284 15349313 -9194244 + AT_rich Low_complexity Low_complexity 1 29 0 3 702 21 36 0 0 chr3L 15350285 15350313 -9193244 + AT_rich Low_complexity Low_complexity 1 28 0 3 702 22 35 0 0 chr3L 15352570 15352599 -9190958 + AT_rich Low_complexity Low_complexity 1 29 0 3 702 205 171 0 0 chr3L 15354752 15354787 -9188770 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 3 702 225 229 14 14 chr3L 15355452 15355523 -9188034 + A-rich Low_complexity Low_complexity 1 71 0 3 702 198 220 0 0 chr3L 15357226 15357285 -9186272 + (GTTTG)n Simple_repeat Simple_repeat 2 60 0 3 702 27 0 0 0 chr3L 15359198 15359225 -9184332 + AT_rich Low_complexity Low_complexity 1 27 0 3 702 27 29 0 0 chr3L 15360591 15360625 -9182932 + AT_rich Low_complexity Low_complexity 1 34 0 3 702 22 56 0 0 chr3L 15362522 15362558 -9180999 + AT_rich Low_complexity Low_complexity 1 36 0 3 702 24 0 0 0 chr3L 15366865 15366889 -9176668 + AT_rich Low_complexity Low_complexity 1 24 0 3 702 28 0 0 0 chr3L 15368792 15368820 -9174737 + AT_rich Low_complexity Low_complexity 1 28 0 3 702 263 207 56 22 chr3L 15369293 15369382 -9174175 + (CAG)n Simple_repeat Simple_repeat 1 92 0 3 702 28 61 0 0 chr3L 15370271 15370320 -9173237 + AT_rich Low_complexity Low_complexity 1 49 0 3 702 246 136 0 0 chr3L 15371456 15371500 -9172057 + (CAT)n Simple_repeat Simple_repeat 3 46 0 3 702 32 26 0 0 chr3L 15372914 15372953 -9170604 + AT_rich Low_complexity Low_complexity 1 39 0 3 702 24 67 0 0 chr3L 15374219 15374264 -9169293 + AT_rich Low_complexity Low_complexity 1 45 0 3 702 31 92 0 0 chr3L 15375368 15375455 -9168102 + AT_rich Low_complexity Low_complexity 1 87 0 3 702 30 45 0 0 chr3L 15375477 15375521 -9168036 + AT_rich Low_complexity Low_complexity 1 44 0 3 702 48 43 0 0 chr3L 15376037 15376106 -9167451 + AT_rich Low_complexity Low_complexity 1 69 0 3 702 21 0 0 0 chr3L 15379210 15379231 -9164326 + AT_rich Low_complexity Low_complexity 1 21 0 3 702 25 0 0 0 chr3L 15381515 15381540 -9162017 + AT_rich Low_complexity Low_complexity 1 25 0 3 702 21 0 0 0 chr3L 15382317 15382338 -9161219 + AT_rich Low_complexity Low_complexity 1 21 0 3 702 234 0 0 0 chr3L 15384592 15384618 -9158939 + (CA)n Simple_repeat Simple_repeat 2 27 0 3 702 26 0 0 0 chr3L 15386213 15386239 -9157318 + AT_rich Low_complexity Low_complexity 1 26 0 3 702 29 28 0 0 chr3L 15386872 15386908 -9156649 + AT_rich Low_complexity Low_complexity 1 36 0 3 702 21 57 0 0 chr3L 15388000 15388035 -9155522 + AT_rich Low_complexity Low_complexity 1 35 0 3 702 197 140 0 23 chr3L 15390307 15390351 -9153206 + (TTAA)n Simple_repeat Simple_repeat 1 43 0 3 702 30 27 0 0 chr3L 15394629 15394666 -9148891 + AT_rich Low_complexity Low_complexity 1 37 0 3 702 21 0 0 0 chr3L 15398335 15398356 -9145201 + AT_rich Low_complexity Low_complexity 1 21 0 3 702 56 29 0 0 chr3L 15398894 15398964 -9144593 + AT_rich Low_complexity Low_complexity 1 70 0 3 702 24 0 0 0 chr3L 15402198 15402222 -9141335 + AT_rich Low_complexity Low_complexity 1 24 0 3 702 26 0 0 0 chr3L 15403761 15403787 -9139770 + AT_rich Low_complexity Low_complexity 1 26 0 3 702 203 250 0 0 chr3L 15404181 15404237 -9139320 + (CA)n Simple_repeat Simple_repeat 1 56 0 3 702 22 0 0 0 chr3L 15405140 15405162 -9138395 + AT_rich Low_complexity Low_complexity 1 22 0 3 702 27 0 0 0 chr3L 15407023 15407050 -9136507 + AT_rich Low_complexity Low_complexity 1 27 0 3 702 22 88 0 0 chr3L 15407519 15407576 -9135981 + AT_rich Low_complexity Low_complexity 1 57 0 3 702 26 30 0 0 chr3L 15408397 15408430 -9135127 + AT_rich Low_complexity Low_complexity 1 33 0 3 702 48 72 0 0 chr3L 15410024 15410121 -9133436 + AT_rich Low_complexity Low_complexity 1 97 0 3 702 336 191 0 0 chr3L 15412455 15412544 -9131013 + (CAG)n Simple_repeat Simple_repeat 3 91 0 3 702 27 0 0 0 chr3L 15412804 15412831 -9130726 + AT_rich Low_complexity Low_complexity 1 27 0 3 702 30 45 0 0 chr3L 15413452 15413496 -9130061 + AT_rich Low_complexity Low_complexity 1 44 0 3 702 23 54 0 0 chr3L 15413946 15413983 -9129574 + AT_rich Low_complexity Low_complexity 1 37 0 3 702 231 36 0 0 chr3L 15415087 15415115 -9128442 + (TA)n Simple_repeat Simple_repeat 1 28 0 3 702 38 61 0 0 chr3L 15415482 15415548 -9128009 + AT_rich Low_complexity Low_complexity 1 66 0 3 702 222 105 0 0 chr3L 15416607 15416645 -9126912 + (ATTCG)n Simple_repeat Simple_repeat 5 42 0 3 702 3506 14 0 0 chr3L 15416905 15417320 -9126237 + NOMAD_LTR LTR Gypsy 104 518 0 3 702 10840 1 0 1 chr3L 15417320 15418572 -9124985 + NOMAD_I LTR Gypsy 1 1251 -5321 3 702 5438 0 0 0 chr3L 15418564 15419184 -9124373 + NOMAD_I LTR Gypsy 5953 6572 0 3 702 4495 4 0 0 chr3L 15419184 15419702 -9123855 + NOMAD_LTR LTR Gypsy 1 518 0 3 702 25 65 0 0 chr3L 15419773 15419819 -9123738 + AT_rich Low_complexity Low_complexity 1 46 0 3 702 21 36 0 0 chr3L 15423382 15423410 -9120147 + AT_rich Low_complexity Low_complexity 1 28 0 3 702 24 0 0 0 chr3L 15423866 15423890 -9119667 + AT_rich Low_complexity Low_complexity 1 24 0 3 702 34 0 0 0 chr3L 15424827 15424861 -9118696 + AT_rich Low_complexity Low_complexity 1 34 0 3 702 22 56 0 0 chr3L 15425371 15425407 -9118150 + AT_rich Low_complexity Low_complexity 1 36 0 3 702 27 29 0 0 chr3L 15427179 15427213 -9116344 + AT_rich Low_complexity Low_complexity 1 34 0 3 702 25 0 0 0 chr3L 15427820 15427845 -9115712 + AT_rich Low_complexity Low_complexity 1 25 0 3 702 24 0 0 0 chr3L 15429670 15429694 -9113863 + AT_rich Low_complexity Low_complexity 1 24 0 3 702 27 49 0 0 chr3L 15430100 15430141 -9113416 + AT_rich Low_complexity Low_complexity 1 41 0 3 702 22 0 0 0 chr3L 15432539 15432561 -9110996 + AT_rich Low_complexity Low_complexity 1 22 0 3 702 34 42 0 0 chr3L 15433847 15433895 -9109662 + AT_rich Low_complexity Low_complexity 1 48 0 3 702 227 217 0 0 chr3L 15435055 15435101 -9108456 + A-rich Low_complexity Low_complexity 1 46 0 3 702 33 80 0 0 chr3L 15438445 15438520 -9105037 + AT_rich Low_complexity Low_complexity 1 75 0 3 702 22 56 0 0 chr3L 15440142 15440178 -9103379 + AT_rich Low_complexity Low_complexity 1 36 0 3 702 21 0 0 0 chr3L 15440728 15440749 -9102808 + AT_rich Low_complexity Low_complexity 1 21 0 3 702 21 57 0 0 chr3L 15441503 15441538 -9102019 + AT_rich Low_complexity Low_complexity 1 35 0 3 702 27 29 0 0 chr3L 15446077 15446111 -9097446 + AT_rich Low_complexity Low_complexity 1 34 0 3 702 23 0 0 0 chr3L 15449027 15449050 -9094507 + AT_rich Low_complexity Low_complexity 1 23 0 3 702 26 0 0 0 chr3L 15449286 15449312 -9094245 + AT_rich Low_complexity Low_complexity 1 26 0 3 702 31 44 0 0 chr3L 15449384 15449429 -9094128 + AT_rich Low_complexity Low_complexity 1 45 0 3 702 30 45 0 0 chr3L 15451604 15451648 -9091909 + AT_rich Low_complexity Low_complexity 1 44 0 3 702 23 33 0 0 chr3L 15453388 15453418 -9090139 + AT_rich Low_complexity Low_complexity 1 30 0 3 702 32 81 0 0 chr3L 15453952 15454026 -9089531 + AT_rich Low_complexity Low_complexity 1 74 0 3 702 25 0 0 0 chr3L 15454091 15454116 -9089441 + AT_rich Low_complexity Low_complexity 1 25 0 3 702 22 35 0 0 chr3L 15454514 15454543 -9089014 + AT_rich Low_complexity Low_complexity 1 29 0 3 702 26 0 0 0 chr3L 15454677 15454703 -9088854 + AT_rich Low_complexity Low_complexity 1 26 0 3 702 30 59 0 0 chr3L 15458617 15458668 -9084889 + AT_rich Low_complexity Low_complexity 1 51 0 3 702 22 0 0 0 chr3L 15464457 15464479 -9079078 + AT_rich Low_complexity Low_complexity 1 22 0 3 702 300 223 0 0 chr3L 15465327 15465430 -9078127 + (TATG)n Simple_repeat Simple_repeat 3 105 0 3 702 399 226 0 0 chr3L 15465455 15465588 -9077969 + (TATG)n Simple_repeat Simple_repeat 1 133 0 3 703 39 80 0 0 chr3L 15470333 15470421 -9073136 + AT_rich Low_complexity Low_complexity 1 88 0 3 703 21 0 0 0 chr3L 15470478 15470499 -9073058 + AT_rich Low_complexity Low_complexity 1 21 0 3 703 28 29 0 0 chr3L 15470541 15470576 -9072981 + AT_rich Low_complexity Low_complexity 1 35 0 3 703 35 83 0 0 chr3L 15470634 15470718 -9072839 + AT_rich Low_complexity Low_complexity 1 84 0 3 703 21 36 0 0 chr3L 15472005 15472033 -9071524 + AT_rich Low_complexity Low_complexity 1 28 0 3 703 24 91 0 0 chr3L 15472876 15472942 -9070615 + AT_rich Low_complexity Low_complexity 1 66 0 3 703 21 0 0 0 chr3L 15474750 15474771 -9068786 + AT_rich Low_complexity Low_complexity 1 21 0 3 703 23 54 0 0 chr3L 15474986 15475023 -9068534 + AT_rich Low_complexity Low_complexity 1 37 0 3 703 33 0 0 0 chr3L 15476681 15476714 -9066843 + AT_rich Low_complexity Low_complexity 1 33 0 3 703 227 235 0 56 chr3L 15477033 15477123 -9066434 - ROO_I LTR Pao -7531 725 641 3 703 25 31 0 0 chr3L 15477467 15477499 -9066058 + AT_rich Low_complexity Low_complexity 1 32 0 3 703 34 55 0 0 chr3L 15478690 15478745 -9064812 + AT_rich Low_complexity Low_complexity 1 55 0 3 703 231 114 0 0 chr3L 15479898 15479933 -9063624 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 703 28 0 0 0 chr3L 15481292 15481320 -9062237 + AT_rich Low_complexity Low_complexity 1 28 0 3 703 25 0 0 0 chr3L 15483367 15483392 -9060165 + AT_rich Low_complexity Low_complexity 1 25 0 3 703 194 91 0 29 chr3L 15483810 15483844 -9059713 + (CGGA)n Simple_repeat Simple_repeat 1 33 0 3 703 24 32 0 0 chr3L 15483936 15483967 -9059590 + AT_rich Low_complexity Low_complexity 1 31 0 3 703 23 0 0 0 chr3L 15484141 15484164 -9059393 + AT_rich Low_complexity Low_complexity 1 23 0 3 703 259 281 0 11 chr3L 15485857 15485947 -9057610 + (CA)n Simple_repeat Simple_repeat 2 90 0 3 703 22 35 0 0 chr3L 15486508 15486537 -9057020 + AT_rich Low_complexity Low_complexity 1 29 0 3 703 26 50 0 0 chr3L 15488752 15488792 -9054765 + AT_rich Low_complexity Low_complexity 1 40 0 3 703 195 217 0 0 chr3L 15500751 15500811 -9042746 + GA-rich Low_complexity Low_complexity 2 61 0 3 703 23 0 0 0 chr3L 15501780 15501803 -9041754 + AT_rich Low_complexity Low_complexity 1 23 0 3 703 23 0 0 0 chr3L 15504380 15504403 -9039154 + AT_rich Low_complexity Low_complexity 1 23 0 3 703 189 0 0 0 chr3L 15505247 15505268 -9038289 + (TTC)n Simple_repeat Simple_repeat 1 21 0 3 703 32 0 0 0 chr3L 15506262 15506294 -9037263 + AT_rich Low_complexity Low_complexity 1 32 0 3 703 29 0 0 0 chr3L 15506691 15506720 -9036837 + AT_rich Low_complexity Low_complexity 1 29 0 3 703 23 0 0 0 chr3L 15506733 15506756 -9036801 + AT_rich Low_complexity Low_complexity 1 23 0 3 703 223 208 19 0 chr3L 15508208 15508261 -9035296 + (TATG)n Simple_repeat Simple_repeat 3 56 0 3 703 23 54 0 0 chr3L 15509253 15509290 -9034267 + AT_rich Low_complexity Low_complexity 1 37 0 3 703 235 49 0 47 chr3L 15509557 15509600 -9033957 + (TA)n Simple_repeat Simple_repeat 1 41 0 3 703 23 33 0 0 chr3L 15511336 15511366 -9032191 + AT_rich Low_complexity Low_complexity 1 30 0 3 703 22 35 0 0 chr3L 15512501 15512530 -9031027 + AT_rich Low_complexity Low_complexity 1 29 0 3 703 22 35 0 0 chr3L 15513077 15513106 -9030451 + AT_rich Low_complexity Low_complexity 1 29 0 3 703 28 0 0 0 chr3L 15514759 15514787 -9028770 + AT_rich Low_complexity Low_complexity 1 28 0 3 703 31 44 0 0 chr3L 15518978 15519023 -9024534 + AT_rich Low_complexity Low_complexity 1 45 0 3 703 25 31 0 0 chr3L 15519233 15519265 -9024292 + AT_rich Low_complexity Low_complexity 1 32 0 3 703 26 0 0 0 chr3L 15523648 15523674 -9019883 + AT_rich Low_complexity Low_complexity 1 26 0 3 703 29 0 0 0 chr3L 15525406 15525435 -9018122 + AT_rich Low_complexity Low_complexity 1 29 0 3 703 34 42 0 0 chr3L 15526168 15526216 -9017341 + AT_rich Low_complexity Low_complexity 1 48 0 3 703 315 71 0 0 chr3L 15527222 15527264 -9016293 + (CAG)n Simple_repeat Simple_repeat 3 44 0 3 703 22 35 0 0 chr3L 15528259 15528288 -9015269 + AT_rich Low_complexity Low_complexity 1 29 0 3 703 205 167 0 0 chr3L 15528351 15528387 -9015170 + GA-rich Low_complexity Low_complexity 2 37 0 3 703 208 260 20 40 chr3L 15529185 15529285 -9014272 + GA-rich Low_complexity Low_complexity 1 98 0 3 703 29 0 0 0 chr3L 15532138 15532167 -9011390 + AT_rich Low_complexity Low_complexity 1 29 0 3 703 377 39 0 19 chr3L 15534073 15534125 -9009432 + (TA)n Simple_repeat Simple_repeat 1 51 0 3 703 22 80 0 0 chr3L 15535169 15535219 -9008338 + AT_rich Low_complexity Low_complexity 1 50 0 3 703 204 67 0 0 chr3L 15536634 15536664 -9006893 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 3 703 211 73 23 47 chr3L 15537144 15537187 -9006370 + (CACAC)n Simple_repeat Simple_repeat 3 44 0 3 703 203 254 17 0 chr3L 15537975 15538034 -9005523 + (CATA)n Simple_repeat Simple_repeat 4 63 0 3 703 198 0 0 0 chr3L 15538195 15538217 -9005340 + (CA)n Simple_repeat Simple_repeat 2 23 0 3 703 27 29 0 0 chr3L 15538861 15538895 -9004662 + AT_rich Low_complexity Low_complexity 1 34 0 3 703 243 170 0 0 chr3L 15539426 15539473 -9004084 + (TATG)n Simple_repeat Simple_repeat 2 48 0 3 703 207 0 0 0 chr3L 15539617 15539640 -9003917 + (CAGA)n Simple_repeat Simple_repeat 1 23 0 3 703 222 118 0 0 chr3L 15540627 15540661 -9002896 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 703 21 0 0 0 chr3L 15541452 15541473 -9002084 + AT_rich Low_complexity Low_complexity 1 21 0 3 703 21 0 0 0 chr3L 15542405 15542426 -9001131 + AT_rich Low_complexity Low_complexity 1 21 0 3 703 25 31 0 0 chr3L 15543194 15543226 -9000331 + AT_rich Low_complexity Low_complexity 1 32 0 3 703 192 97 0 0 chr3L 15544485 15544516 -8999041 + (CAGTT)n Simple_repeat Simple_repeat 5 35 0 3 703 229 276 0 30 chr3L 15544933 15545034 -8998523 + A-rich Low_complexity Low_complexity 4 101 0 3 703 30 45 0 0 chr3L 15546465 15546509 -8997048 + AT_rich Low_complexity Low_complexity 1 44 0 3 703 1267 200 154 76 chr3L 15546521 15546960 -8996597 + DNAREP1_DM LINE Penelope 27 505 -89 3 703 202 29 57 0 chr3L 15546960 15546995 -8996562 + (TATAA)n Simple_repeat Simple_repeat 5 41 0 3 703 1267 200 154 76 chr3L 15546995 15547081 -8996476 + DNAREP1_DM LINE Penelope 506 592 -2 3 703 246 240 0 0 chr3L 15547432 15547536 -8996021 + ROO_I LTR Pao 640 743 -7513 3 703 189 121 0 0 chr3L 15547538 15547571 -8995986 + (CAA)n Simple_repeat Simple_repeat 1 33 0 3 703 11633 91 3 1 chr3L 15548073 15549805 -8993752 + S_DM DNA Tc1 1 1736 0 3 703 22 0 0 0 chr3L 15553282 15553304 -8990253 + AT_rich Low_complexity Low_complexity 1 22 0 3 703 21 36 0 0 chr3L 15553846 15553874 -8989683 + AT_rich Low_complexity Low_complexity 1 28 0 3 703 23 0 0 0 chr3L 15554098 15554121 -8989436 + AT_rich Low_complexity Low_complexity 1 23 0 3 703 23 33 0 0 chr3L 15556388 15556418 -8987139 + AT_rich Low_complexity Low_complexity 1 30 0 3 703 27 0 0 0 chr3L 15556438 15556465 -8987092 + AT_rich Low_complexity Low_complexity 1 27 0 3 703 21 0 0 0 chr3L 15557228 15557249 -8986308 + AT_rich Low_complexity Low_complexity 1 21 0 3 703 23 0 0 0 chr3L 15558787 15558810 -8984747 + AT_rich Low_complexity Low_complexity 1 23 0 3 703 186 143 0 0 chr3L 15559444 15559479 -8984078 + (TTG)n Simple_repeat Simple_repeat 2 36 0 3 703 201 74 0 0 chr3L 15559957 15559984 -8983573 + (CTCTG)n Simple_repeat Simple_repeat 3 29 0 3 703 23 0 0 0 chr3L 15565998 15566021 -8977536 + AT_rich Low_complexity Low_complexity 1 23 0 3 703 25 0 0 0 chr3L 15569374 15569399 -8974158 + AT_rich Low_complexity Low_complexity 1 25 0 3 703 21 0 0 0 chr3L 15578840 15578861 -8964696 + AT_rich Low_complexity Low_complexity 1 21 0 3 703 242 228 0 0 chr3L 15579440 15579497 -8964060 + (CAT)n Simple_repeat Simple_repeat 3 59 0 3 703 28 29 0 0 chr3L 15582386 15582421 -8961136 + AT_rich Low_complexity Low_complexity 1 35 0 3 703 231 217 0 0 chr3L 15582561 15582607 -8960950 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 703 25 0 0 0 chr3L 15583607 15583632 -8959925 + AT_rich Low_complexity Low_complexity 1 25 0 3 703 214 146 0 47 chr3L 15584312 15584355 -8959202 + (TTG)n Simple_repeat Simple_repeat 2 42 0 3 703 36 23 0 0 chr3L 15585770 15585813 -8957744 + AT_rich Low_complexity Low_complexity 1 43 0 3 703 283 254 0 0 chr3L 15586079 15586150 -8957407 + (CAA)n Simple_repeat Simple_repeat 1 71 0 3 703 208 174 0 21 chr3L 15587507 15587554 -8956003 + (CAA)n Simple_repeat Simple_repeat 1 46 0 3 703 21 0 0 0 chr3L 15590133 15590154 -8953403 + AT_rich Low_complexity Low_complexity 1 21 0 3 703 195 139 0 0 chr3L 15590666 15590702 -8952855 + (A)n Simple_repeat Simple_repeat 1 36 0 3 703 194 62 31 0 chr3L 15592731 15592763 -8950794 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 3 703 183 42 0 0 chr3L 15594511 15594535 -8949022 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 703 200 255 0 0 chr3L 15594949 15594996 -8948561 + (CGA)n Simple_repeat Simple_repeat 2 48 0 3 703 189 178 0 0 chr3L 15595093 15595138 -8948419 + (CAG)n Simple_repeat Simple_repeat 1 45 0 3 703 212 167 24 0 chr3L 15595159 15595201 -8948356 + (CGA)n Simple_repeat Simple_repeat 2 44 0 3 703 208 143 0 0 chr3L 15596202 15596237 -8947320 + (A)n Simple_repeat Simple_repeat 1 35 0 3 703 201 179 0 51 chr3L 15596299 15596358 -8947199 + T-rich Low_complexity Low_complexity 5 60 0 3 703 183 139 0 0 chr3L 15596370 15596406 -8947151 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 3 704 228 111 0 0 chr3L 15598156 15598192 -8945365 + (CAG)n Simple_repeat Simple_repeat 3 38 0 3 704 309 125 0 0 chr3L 15598229 15598285 -8945272 + (CAG)n Simple_repeat Simple_repeat 1 56 0 3 704 251 277 0 0 chr3L 15598755 15598820 -8944737 + (CAA)n Simple_repeat Simple_repeat 3 67 0 3 704 201 234 0 0 chr3L 15599852 15599899 -8943658 + (CCA)n Simple_repeat Simple_repeat 1 47 0 3 704 180 130 0 69 chr3L 15600557 15600615 -8942942 + (CAAA)n Simple_repeat Simple_repeat 2 55 0 3 704 204 189 0 70 chr3L 15601193 15601250 -8942307 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 3 704 207 100 0 0 chr3L 15602142 15602172 -8941385 + (A)n Simple_repeat Simple_repeat 1 30 0 3 704 24 0 0 0 chr3L 15603616 15603640 -8939917 + AT_rich Low_complexity Low_complexity 1 24 0 3 704 23 78 0 0 chr3L 15605700 15605751 -8937806 + AT_rich Low_complexity Low_complexity 1 51 0 3 704 23 78 0 0 chr3L 15609696 15609747 -8933810 + AT_rich Low_complexity Low_complexity 1 51 0 3 704 30 59 0 0 chr3L 15609863 15609914 -8933643 + AT_rich Low_complexity Low_complexity 1 51 0 3 704 31 0 0 0 chr3L 15610836 15610867 -8932690 + AT_rich Low_complexity Low_complexity 1 31 0 3 704 22 0 0 0 chr3L 15611016 15611038 -8932519 + AT_rich Low_complexity Low_complexity 1 22 0 3 704 189 94 0 0 chr3L 15612995 15613027 -8930530 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 704 222 128 0 0 chr3L 15613226 15613265 -8930292 + (GGA)n Simple_repeat Simple_repeat 1 39 0 3 704 21 36 0 0 chr3L 15616434 15616462 -8927095 + AT_rich Low_complexity Low_complexity 1 28 0 3 704 26 30 0 0 chr3L 15616887 15616920 -8926637 + AT_rich Low_complexity Low_complexity 1 33 0 3 704 22 0 0 0 chr3L 15617008 15617030 -8926527 + AT_rich Low_complexity Low_complexity 1 22 0 3 704 315 49 0 0 chr3L 15617809 15617850 -8925707 + (TAAA)n Simple_repeat Simple_repeat 3 43 0 3 704 21 0 0 0 chr3L 15621195 15621216 -8922341 + AT_rich Low_complexity Low_complexity 1 21 0 3 704 30 100 0 0 chr3L 15623920 15624020 -8919537 + AT_rich Low_complexity Low_complexity 1 100 0 3 704 35 0 0 0 chr3L 15626401 15626436 -8917121 + AT_rich Low_complexity Low_complexity 1 35 0 3 704 228 228 0 0 chr3L 15627637 15627694 -8915863 + (ACTG)n Simple_repeat Simple_repeat 4 60 0 3 704 29 84 0 0 chr3L 15627942 15628013 -8915544 + AT_rich Low_complexity Low_complexity 1 71 0 3 704 24 0 0 0 chr3L 15628491 15628515 -8915042 + AT_rich Low_complexity Low_complexity 1 24 0 3 704 27 62 0 0 chr3L 15628574 15628622 -8914935 + AT_rich Low_complexity Low_complexity 1 48 0 3 704 34 96 0 0 chr3L 15630084 15630188 -8913369 + AT_rich Low_complexity Low_complexity 1 104 0 3 704 24 0 0 0 chr3L 15632488 15632512 -8911045 + AT_rich Low_complexity Low_complexity 1 24 0 3 704 36 70 0 0 chr3L 15636760 15636831 -8906726 + AT_rich Low_complexity Low_complexity 1 71 0 3 704 21 0 0 0 chr3L 15637315 15637336 -8906221 + AT_rich Low_complexity Low_complexity 1 21 0 3 704 222 118 0 0 chr3L 15639207 15639241 -8904316 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 704 23 0 0 0 chr3L 15641159 15641182 -8902375 + AT_rich Low_complexity Low_complexity 1 23 0 3 704 21 57 0 0 chr3L 15641444 15641479 -8902078 + AT_rich Low_complexity Low_complexity 1 35 0 3 704 26 0 0 0 chr3L 15641680 15641706 -8901851 + AT_rich Low_complexity Low_complexity 1 26 0 3 704 22 0 0 0 chr3L 15643401 15643423 -8900134 + AT_rich Low_complexity Low_complexity 1 22 0 3 704 21 57 0 0 chr3L 15644069 15644104 -8899453 + AT_rich Low_complexity Low_complexity 1 35 0 3 704 26 30 0 0 chr3L 15644965 15644998 -8898559 + AT_rich Low_complexity Low_complexity 1 33 0 3 704 200 174 0 42 chr3L 15646941 15646989 -8896568 + (CCCCAA)n Simple_repeat Simple_repeat 6 51 0 3 704 22 0 0 0 chr3L 15651057 15651079 -8892478 + AT_rich Low_complexity Low_complexity 1 22 0 3 704 22 35 0 0 chr3L 15653333 15653362 -8890195 + AT_rich Low_complexity Low_complexity 1 29 0 3 704 25 0 0 0 chr3L 15655286 15655311 -8888246 + AT_rich Low_complexity Low_complexity 1 25 0 3 704 34 24 0 0 chr3L 15660700 15660741 -8882816 + AT_rich Low_complexity Low_complexity 1 41 0 3 704 22 0 0 0 chr3L 15666150 15666172 -8877385 + AT_rich Low_complexity Low_complexity 1 22 0 3 704 30 45 0 0 chr3L 15667468 15667512 -8876045 + AT_rich Low_complexity Low_complexity 1 44 0 3 704 38 22 0 0 chr3L 15677690 15677735 -8865822 + AT_rich Low_complexity Low_complexity 1 45 0 3 704 24 53 0 0 chr3L 15678654 15678692 -8864865 + AT_rich Low_complexity Low_complexity 1 38 0 3 704 22 0 0 0 chr3L 15680055 15680077 -8863480 + AT_rich Low_complexity Low_complexity 1 22 0 3 704 25 31 0 0 chr3L 15686241 15686273 -8857284 + AT_rich Low_complexity Low_complexity 1 32 0 3 704 206 182 0 22 chr3L 15689790 15689835 -8853722 + (TAA)n Simple_repeat Simple_repeat 3 46 0 3 704 282 56 0 0 chr3L 15690356 15690392 -8853165 + (TCTA)n Simple_repeat Simple_repeat 1 36 0 3 704 333 169 0 38 chr3L 15691150 15691230 -8852327 - ROO_I LTR Pao -7527 729 653 3 704 212 235 0 0 chr3L 15693021 15693072 -8850485 + (CCGAG)n Simple_repeat Simple_repeat 3 53 0 3 704 257 320 16 16 chr3L 15701496 15701620 -8841937 + (CAA)n Simple_repeat Simple_repeat 3 126 0 3 704 195 100 0 0 chr3L 15704242 15704272 -8839285 + (ATG)n Simple_repeat Simple_repeat 1 30 0 3 704 24 0 0 0 chr3L 15707822 15707846 -8835711 + AT_rich Low_complexity Low_complexity 1 24 0 3 704 210 211 0 34 chr3L 15709505 15709564 -8833993 + (TTTG)n Simple_repeat Simple_repeat 2 58 0 3 704 24 32 0 0 chr3L 15709757 15709788 -8833769 + AT_rich Low_complexity Low_complexity 1 31 0 3 704 26 0 0 0 chr3L 15710351 15710377 -8833180 + AT_rich Low_complexity Low_complexity 1 26 0 3 704 186 143 0 0 chr3L 15717100 15717135 -8826422 + (TG)n Simple_repeat Simple_repeat 2 36 0 3 704 180 0 0 0 chr3L 15719450 15719470 -8824087 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 704 198 0 0 0 chr3L 15722525 15722547 -8821010 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 704 27 0 0 0 chr3L 15723158 15723185 -8820372 + AT_rich Low_complexity Low_complexity 1 27 0 3 704 210 37 0 0 chr3L 15724033 15724060 -8819497 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 704 25 51 0 0 chr3L 15726601 15726640 -8816917 + AT_rich Low_complexity Low_complexity 1 39 0 3 705 242 273 0 0 chr3L 15729193 15729259 -8814298 + (CAA)n Simple_repeat Simple_repeat 1 66 0 3 705 195 114 0 0 chr3L 15730742 15730777 -8812780 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 705 29 47 0 0 chr3L 15732990 15733033 -8810524 + AT_rich Low_complexity Low_complexity 1 43 0 3 705 243 0 0 0 chr3L 15733130 15733157 -8810400 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 705 243 211 0 17 chr3L 15734110 15734168 -8809389 + (AACTG)n Simple_repeat Simple_repeat 2 58 0 3 705 21 0 0 0 chr3L 15737118 15737139 -8806418 + AT_rich Low_complexity Low_complexity 1 21 0 3 705 22 0 0 0 chr3L 15737916 15737938 -8805619 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 254 29 0 28 chr3L 15738312 15738348 -8805209 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 705 28 0 0 0 chr3L 15739785 15739813 -8803744 + AT_rich Low_complexity Low_complexity 1 28 0 3 705 215 143 0 23 chr3L 15741081 15741124 -8802433 + (CAACC)n Simple_repeat Simple_repeat 2 43 0 3 705 29 47 0 0 chr3L 15741933 15741976 -8801581 + AT_rich Low_complexity Low_complexity 1 43 0 3 705 25 0 0 0 chr3L 15742592 15742617 -8800940 + AT_rich Low_complexity Low_complexity 1 25 0 3 705 24 0 0 0 chr3L 15745295 15745319 -8798238 + AT_rich Low_complexity Low_complexity 1 24 0 3 705 245 210 19 39 chr3L 15745848 15745952 -8797605 + ROO_I LTR Pao 643 744 -7512 3 705 31 0 0 0 chr3L 15746690 15746721 -8796836 + AT_rich Low_complexity Low_complexity 1 31 0 3 705 252 130 0 0 chr3L 15747038 15747084 -8796473 + (CAG)n Simple_repeat Simple_repeat 3 48 0 3 705 201 182 0 0 chr3L 15749174 15749207 -8794350 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 705 22 0 0 0 chr3L 15751540 15751562 -8791995 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 185 59 0 56 chr3L 15753932 15753968 -8789589 + (TAAAA)n Simple_repeat Simple_repeat 4 37 0 3 705 24 0 0 0 chr3L 15755986 15756010 -8787547 + AT_rich Low_complexity Low_complexity 1 24 0 3 705 21 36 0 0 chr3L 15758019 15758047 -8785510 + AT_rich Low_complexity Low_complexity 1 28 0 3 705 31 58 0 0 chr3L 15758858 15758910 -8784647 + AT_rich Low_complexity Low_complexity 1 52 0 3 705 180 111 0 0 chr3L 15759761 15759788 -8783769 + (CGAAA)n Simple_repeat Simple_repeat 3 29 0 3 705 29 0 0 0 chr3L 15762121 15762150 -8781407 + AT_rich Low_complexity Low_complexity 1 29 0 3 705 24 0 0 0 chr3L 15762205 15762229 -8781328 + AT_rich Low_complexity Low_complexity 1 24 0 3 705 231 125 0 82 chr3L 15762246 15762307 -8781250 + A-rich Low_complexity Low_complexity 2 57 0 3 705 24 0 0 0 chr3L 15762507 15762531 -8781026 + AT_rich Low_complexity Low_complexity 1 24 0 3 705 21 57 0 0 chr3L 15764403 15764438 -8779119 + AT_rich Low_complexity Low_complexity 1 35 0 3 705 21 0 0 0 chr3L 15769497 15769518 -8774039 + AT_rich Low_complexity Low_complexity 1 21 0 3 705 22 0 0 0 chr3L 15771442 15771464 -8772093 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 26 30 0 0 chr3L 15771648 15771681 -8771876 + AT_rich Low_complexity Low_complexity 1 33 0 3 705 216 140 23 23 chr3L 15773818 15773862 -8769695 + T-rich Low_complexity Low_complexity 5 48 0 3 705 26 30 0 0 chr3L 15774941 15774974 -8768583 + AT_rich Low_complexity Low_complexity 1 33 0 3 705 22 0 0 0 chr3L 15776613 15776635 -8766922 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 21 0 0 0 chr3L 15779030 15779051 -8764506 + AT_rich Low_complexity Low_complexity 1 21 0 3 705 24 0 0 0 chr3L 15786431 15786455 -8757102 + AT_rich Low_complexity Low_complexity 1 24 0 3 705 21 0 0 0 chr3L 15790988 15791009 -8752548 + AT_rich Low_complexity Low_complexity 1 21 0 3 705 22 56 0 0 chr3L 15794818 15794854 -8748703 + AT_rich Low_complexity Low_complexity 1 36 0 3 705 27 96 0 0 chr3L 15797618 15797701 -8745856 + AT_rich Low_complexity Low_complexity 1 83 0 3 705 27 96 0 0 chr3L 15799668 15799751 -8743806 + AT_rich Low_complexity Low_complexity 1 83 0 3 705 33 60 0 35 chr3L 15801172 15801259 -8742298 + AT_rich Low_complexity Low_complexity 1 84 0 3 705 26 50 0 0 chr3L 15801456 15801496 -8742061 + AT_rich Low_complexity Low_complexity 1 40 0 3 705 210 158 0 0 chr3L 15802824 15802862 -8740695 + (ATG)n Simple_repeat Simple_repeat 3 40 0 3 705 26 74 0 0 chr3L 15803181 15803235 -8740322 + AT_rich Low_complexity Low_complexity 1 54 0 3 705 207 0 0 0 chr3L 15805013 15805036 -8738521 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 705 24 0 0 0 chr3L 15806873 15806897 -8736660 + AT_rich Low_complexity Low_complexity 1 24 0 3 705 22 0 0 0 chr3L 15807129 15807151 -8736406 + AT_rich Low_complexity Low_complexity 1 22 0 3 705 25 0 0 0 chr3L 15809598 15809623 -8733934 + AT_rich Low_complexity Low_complexity 1 25 0 3 705 241 183 0 40 chr3L 15814627 15814701 -8728856 - ROO_I LTR Pao -7525 731 661 3 705 201 246 15 15 chr3L 15816765 15816831 -8726726 + (CTG)n Simple_repeat Simple_repeat 2 67 0 3 705 269 230 0 10 chr3L 15816936 15817037 -8726520 + (TTG)n Simple_repeat Simple_repeat 1 100 0 3 705 23 33 0 0 chr3L 15818495 15818525 -8725032 + AT_rich Low_complexity Low_complexity 1 30 0 3 705 291 286 0 0 chr3L 15818830 15818921 -8724636 + (TG)n Simple_repeat Simple_repeat 2 92 0 3 705 272 200 13 0 chr3L 15819150 15819225 -8724332 + (TTG)n Simple_repeat Simple_repeat 2 77 0 3 705 30 0 0 0 chr3L 15819777 15819807 -8723750 + AT_rich Low_complexity Low_complexity 1 30 0 3 705 23 33 0 0 chr3L 15820570 15820600 -8722957 + AT_rich Low_complexity Low_complexity 1 30 0 3 705 23 54 0 0 chr3L 15824734 15824771 -8718786 + AT_rich Low_complexity Low_complexity 1 37 0 3 705 25 31 0 0 chr3L 15825074 15825106 -8718451 + AT_rich Low_complexity Low_complexity 1 32 0 3 705 23 0 0 0 chr3L 15825156 15825179 -8718378 + AT_rich Low_complexity Low_complexity 1 23 0 3 705 186 43 0 0 chr3L 15826480 15826503 -8717054 + (TA)n Simple_repeat Simple_repeat 2 24 0 3 705 56 29 0 0 chr3L 15828733 15828803 -8714754 + AT_rich Low_complexity Low_complexity 1 70 0 3 705 237 132 0 0 chr3L 15832323 15832361 -8711196 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 705 186 43 0 0 chr3L 15834042 15834065 -8709492 + (TTA)n Simple_repeat Simple_repeat 2 24 0 3 705 23 0 0 0 chr3L 15835010 15835033 -8708524 + AT_rich Low_complexity Low_complexity 1 23 0 3 705 22 35 0 0 chr3L 15835166 15835195 -8708362 + AT_rich Low_complexity Low_complexity 1 29 0 3 705 395 10 125 0 chr3L 15836185 15836289 -8707268 + (TA)n Simple_repeat Simple_repeat 2 118 0 3 705 21 36 0 0 chr3L 15836289 15836317 -8707240 + AT_rich Low_complexity Low_complexity 1 28 0 3 705 243 242 0 31 chr3L 15837468 15837532 -8706025 + (CCA)n Simple_repeat Simple_repeat 3 64 0 3 705 49 18 0 0 chr3L 15840624 15840680 -8702877 + AT_rich Low_complexity Low_complexity 1 56 0 3 705 25 0 0 0 chr3L 15841070 15841095 -8702462 + AT_rich Low_complexity Low_complexity 1 25 0 3 705 22 35 0 0 chr3L 15844280 15844309 -8699248 + AT_rich Low_complexity Low_complexity 1 29 0 3 705 30 0 0 0 chr3L 15845747 15845777 -8697780 + AT_rich Low_complexity Low_complexity 1 30 0 3 705 22 56 0 0 chr3L 15845798 15845834 -8697723 + AT_rich Low_complexity Low_complexity 1 36 0 3 705 357 102 0 0 chr3L 15846724 15846783 -8696774 + (TTGG)n Simple_repeat Simple_repeat 1 59 0 3 705 22 35 0 0 chr3L 15850718 15850747 -8692810 + AT_rich Low_complexity Low_complexity 1 29 0 3 705 189 0 0 0 chr3L 15851062 15851083 -8692474 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 705 204 279 0 0 chr3L 15852468 15852529 -8691028 + GA-rich Low_complexity Low_complexity 2 62 0 3 705 35 0 0 0 chr3L 15852568 15852603 -8690954 + AT_rich Low_complexity Low_complexity 1 35 0 3 705 44 46 0 0 chr3L 15853680 15853745 -8689812 + AT_rich Low_complexity Low_complexity 1 65 0 3 705 38 22 0 0 chr3L 15855488 15855533 -8688024 + AT_rich Low_complexity Low_complexity 1 45 0 3 705 225 174 0 0 chr3L 15856403 15856449 -8687108 + GA-rich Low_complexity Low_complexity 2 47 0 3 705 22 35 0 0 chr3L 15857428 15857457 -8686100 + AT_rich Low_complexity Low_complexity 1 29 0 3 705 202 200 0 0 chr3L 15858287 15858327 -8685230 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 705 222 37 0 0 chr3L 15858412 15858439 -8685118 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 705 23 33 0 0 chr3L 15859110 15859140 -8684417 + AT_rich Low_complexity Low_complexity 1 30 0 3 706 22 0 0 0 chr3L 15860603 15860625 -8682932 + AT_rich Low_complexity Low_complexity 1 22 0 3 706 241 363 0 0 chr3L 15863599 15863701 -8679856 + (TCTCTG)n Simple_repeat Simple_repeat 4 105 0 3 706 245 277 0 0 chr3L 15863623 15863688 -8679869 + (CTG)n Simple_repeat Simple_repeat 2 66 0 3 706 29 47 0 0 chr3L 15864111 15864154 -8679403 + AT_rich Low_complexity Low_complexity 1 43 0 3 706 24 32 0 0 chr3L 15864744 15864775 -8678782 + AT_rich Low_complexity Low_complexity 1 31 0 3 706 201 74 0 0 chr3L 15865856 15865883 -8677674 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 3 706 28 29 0 0 chr3L 15867580 15867615 -8675942 + AT_rich Low_complexity Low_complexity 1 35 0 3 706 24 0 0 0 chr3L 15868956 15868980 -8674577 + AT_rich Low_complexity Low_complexity 1 24 0 3 706 209 108 0 26 chr3L 15870311 15870349 -8673208 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 3 706 183 80 0 0 chr3L 15871238 15871263 -8672294 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 706 22 0 0 0 chr3L 15871494 15871516 -8672041 + AT_rich Low_complexity Low_complexity 1 22 0 3 706 24 67 0 0 chr3L 15874183 15874228 -8669329 + AT_rich Low_complexity Low_complexity 1 45 0 3 706 23 68 0 0 chr3L 15875253 15875297 -8668260 + AT_rich Low_complexity Low_complexity 1 44 0 3 706 24 0 0 0 chr3L 15876373 15876397 -8667160 + AT_rich Low_complexity Low_complexity 1 24 0 3 706 198 0 0 0 chr3L 15877790 15877812 -8665745 + (T)n Simple_repeat Simple_repeat 1 22 0 3 706 28 71 0 0 chr3L 15878872 15878928 -8664629 + AT_rich Low_complexity Low_complexity 1 56 0 3 706 218 81 27 0 chr3L 15880524 15880561 -8662996 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 706 37 52 0 0 chr3L 15885017 15885075 -8658482 + AT_rich Low_complexity Low_complexity 1 58 0 3 706 212 203 0 28 chr3L 15886845 15886916 -8656641 + (TTG)n Simple_repeat Simple_repeat 1 69 0 3 706 207 167 0 0 chr3L 15887147 15887189 -8656368 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 706 312 181 0 0 chr3L 15889687 15889770 -8653787 + (ACTG)n Simple_repeat Simple_repeat 4 86 0 3 706 201 239 0 0 chr3L 15890346 15890392 -8653165 + (TCTCTG)n Simple_repeat Simple_repeat 6 51 0 3 706 70 48 0 0 chr3L 15890874 15890979 -8652578 + AT_rich Low_complexity Low_complexity 1 105 0 3 706 21 0 0 0 chr3L 15891096 15891117 -8652440 + AT_rich Low_complexity Low_complexity 1 21 0 3 706 219 215 0 0 chr3L 15891537 15891602 -8651955 + (TTG)n Simple_repeat Simple_repeat 1 65 0 3 706 186 43 0 0 chr3L 15891676 15891699 -8651858 + (CTCA)n Simple_repeat Simple_repeat 3 25 0 3 706 239 0 32 0 chr3L 15891874 15891905 -8651652 + (TA)n Simple_repeat Simple_repeat 2 33 0 3 706 4026 0 0 23 chr3L 15892384 15892857 -8650700 + LINEJ1_DM LINE Jockey 4559 5020 0 3 706 243 0 0 0 chr3L 15892857 15892884 -8650673 + (A)n Simple_repeat Simple_repeat 1 27 0 3 706 23 92 0 0 chr3L 15892975 15893040 -8650517 + AT_rich Low_complexity Low_complexity 1 65 0 3 706 27 29 0 0 chr3L 15893253 15893287 -8650270 + AT_rich Low_complexity Low_complexity 1 34 0 3 706 221 111 22 22 chr3L 15893429 15893475 -8650082 + T-rich Low_complexity Low_complexity 4 49 0 3 706 223 214 0 18 chr3L 15893874 15893931 -8649626 + (TA)n Simple_repeat Simple_repeat 1 56 0 3 706 29 28 0 0 chr3L 15896572 15896608 -8646949 + AT_rich Low_complexity Low_complexity 1 36 0 3 706 228 234 0 0 chr3L 15903494 15903558 -8639999 + A-rich Low_complexity Low_complexity 4 67 0 3 706 24 53 0 0 chr3L 15903882 15903920 -8639637 + AT_rich Low_complexity Low_complexity 1 38 0 3 706 21 0 0 0 chr3L 15903935 15903956 -8639601 + AT_rich Low_complexity Low_complexity 1 21 0 3 706 224 216 0 0 chr3L 15904762 15904813 -8638744 + GA-rich Low_complexity Low_complexity 2 52 0 3 706 204 235 0 0 chr3L 15907241 15907292 -8636265 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 706 28 0 0 0 chr3L 15909021 15909049 -8634508 + AT_rich Low_complexity Low_complexity 1 28 0 3 706 21 36 0 0 chr3L 15910494 15910522 -8633035 + AT_rich Low_complexity Low_complexity 1 28 0 3 706 29 28 0 0 chr3L 15911923 15911959 -8631598 + AT_rich Low_complexity Low_complexity 1 36 0 3 706 288 228 0 48 chr3L 15915269 15915352 -8628205 + A-rich Low_complexity Low_complexity 1 79 0 3 706 268 294 0 8 chr3L 15917481 15917601 -8625956 + (CA)n Simple_repeat Simple_repeat 1 119 0 3 706 24 32 0 0 chr3L 15918328 15918359 -8625198 + AT_rich Low_complexity Low_complexity 1 31 0 3 706 29 28 0 0 chr3L 15918647 15918683 -8624874 + AT_rich Low_complexity Low_complexity 1 36 0 3 706 27 29 0 0 chr3L 15919139 15919173 -8624384 + AT_rich Low_complexity Low_complexity 1 34 0 3 706 33 0 0 0 chr3L 15921798 15921831 -8621726 + AT_rich Low_complexity Low_complexity 1 33 0 3 706 3891 5 0 0 chr3L 15922351 15922779 -8620778 - ROO_LTR LTR Pao 0 428 1 3 706 72965 1 3 0 chr3L 15922779 15931012 -8612545 - ROO_I LTR Pao 0 8256 1 3 706 3891 5 0 0 chr3L 15931012 15931440 -8612117 - ROO_LTR LTR Pao 0 428 1 3 706 22 56 0 0 chr3L 15932387 15932423 -8611134 + AT_rich Low_complexity Low_complexity 1 36 0 3 706 227 31 0 30 chr3L 15934462 15934495 -8609062 + (TGGA)n Simple_repeat Simple_repeat 3 34 0 3 706 22 35 0 0 chr3L 15935198 15935227 -8608330 + AT_rich Low_complexity Low_complexity 1 29 0 3 706 342 342 0 0 chr3L 15940090 15940245 -8603312 + (TCG)n Simple_repeat Simple_repeat 2 156 0 3 706 186 43 0 0 chr3L 15940253 15940276 -8603281 + (TGG)n Simple_repeat Simple_repeat 1 23 0 3 706 222 174 0 0 chr3L 15943014 15943060 -8600497 + (TA)n Simple_repeat Simple_repeat 1 46 0 3 706 23 54 0 0 chr3L 15944823 15944860 -8598697 + AT_rich Low_complexity Low_complexity 1 37 0 3 706 225 172 0 0 chr3L 15945246 15945310 -8598247 + T-rich Low_complexity Low_complexity 2 65 0 3 706 31 76 0 0 chr3L 15948037 15948103 -8595454 + AT_rich Low_complexity Low_complexity 1 66 0 3 706 228 254 0 0 chr3L 15952577 15952636 -8590921 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 706 39 0 0 0 chr3L 15952725 15952764 -8590793 + AT_rich Low_complexity Low_complexity 1 39 0 3 706 195 69 0 0 chr3L 15953906 15953935 -8589622 + (T)n Simple_repeat Simple_repeat 1 29 0 3 706 183 204 0 0 chr3L 15963678 15963722 -8579835 + (TCG)n Simple_repeat Simple_repeat 2 45 0 3 706 211 292 0 0 chr3L 15967542 15967614 -8575943 + (CTG)n Simple_repeat Simple_repeat 1 72 0 3 706 26 30 0 0 chr3L 15969872 15969905 -8573652 + AT_rich Low_complexity Low_complexity 1 33 0 3 706 35 78 0 0 chr3L 15976098 15976175 -8567382 + AT_rich Low_complexity Low_complexity 1 77 0 3 706 21 0 0 0 chr3L 15977432 15977453 -8566104 + AT_rich Low_complexity Low_complexity 1 21 0 3 706 25 0 0 0 chr3L 15981233 15981258 -8562299 + AT_rich Low_complexity Low_complexity 1 25 0 3 706 210 158 0 0 chr3L 15985728 15985766 -8557791 + T-rich Low_complexity Low_complexity 1 38 0 3 706 180 0 0 0 chr3L 15986517 15986537 -8557020 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 706 234 128 0 0 chr3L 15987126 15987165 -8556392 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 706 228 304 0 0 chr3L 15987194 15987273 -8556284 + T-rich Low_complexity Low_complexity 1 79 0 3 706 23 0 0 0 chr3L 15987273 15987296 -8556261 + AT_rich Low_complexity Low_complexity 1 23 0 3 706 24 0 0 0 chr3L 15987517 15987541 -8556016 + AT_rich Low_complexity Low_complexity 1 24 0 3 706 282 244 0 0 chr3L 15987947 15988025 -8555532 + (CTG)n Simple_repeat Simple_repeat 1 78 0 3 706 26 0 0 0 chr3L 15989885 15989911 -8553646 + AT_rich Low_complexity Low_complexity 1 26 0 3 706 24 67 0 0 chr3L 15990008 15990053 -8553504 + AT_rich Low_complexity Low_complexity 1 45 0 3 706 203 179 0 0 chr3L 15990230 15990269 -8553288 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 3 707 185 108 0 26 chr3L 15991372 15991410 -8552147 + (CCAA)n Simple_repeat Simple_repeat 1 37 0 3 707 24 32 0 0 chr3L 15991808 15991839 -8551718 + AT_rich Low_complexity Low_complexity 1 31 0 3 707 228 143 0 0 chr3L 15992339 15992381 -8551176 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 707 22 56 0 0 chr3L 15992959 15992995 -8550562 + AT_rich Low_complexity Low_complexity 1 36 0 3 707 25 51 0 0 chr3L 15993766 15993805 -8549752 + AT_rich Low_complexity Low_complexity 1 39 0 3 707 23 54 0 0 chr3L 15993860 15993897 -8549660 + AT_rich Low_complexity Low_complexity 1 37 0 3 707 195 42 0 0 chr3L 15995553 15995577 -8547980 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 3 707 186 143 0 0 chr3L 15995611 15995646 -8547911 + (TTTG)n Simple_repeat Simple_repeat 1 35 0 3 707 26 0 0 0 chr3L 15997725 15997751 -8545806 + AT_rich Low_complexity Low_complexity 1 26 0 3 707 23 0 0 0 chr3L 16003454 16003477 -8540080 + AT_rich Low_complexity Low_complexity 1 23 0 3 707 198 0 0 0 chr3L 16004671 16004693 -8538864 + (CCA)n Simple_repeat Simple_repeat 3 24 0 3 707 217 155 66 66 chr3L 16005849 16005925 -8537632 + (GTATG)n Simple_repeat Simple_repeat 1 76 0 3 707 275 152 0 33 chr3L 16006168 16006229 -8537328 + (ATGGTG)n Simple_repeat Simple_repeat 1 59 0 3 707 24 53 0 0 chr3L 16006598 16006636 -8536921 + AT_rich Low_complexity Low_complexity 1 38 0 3 707 189 74 0 0 chr3L 16007125 16007152 -8536405 + (A)n Simple_repeat Simple_repeat 1 27 0 3 707 24 53 0 0 chr3L 16007595 16007633 -8535924 + AT_rich Low_complexity Low_complexity 1 38 0 3 707 32 26 0 0 chr3L 16008310 16008349 -8535208 + AT_rich Low_complexity Low_complexity 1 39 0 3 707 24 0 0 0 chr3L 16009030 16009054 -8534503 + AT_rich Low_complexity Low_complexity 1 24 0 3 707 35 54 0 0 chr3L 16009222 16009278 -8534279 + AT_rich Low_complexity Low_complexity 1 56 0 3 707 204 208 0 40 chr3L 16011126 16011176 -8532381 + (CACCAT)n Simple_repeat Simple_repeat 5 52 0 3 707 192 158 0 0 chr3L 16011932 16011970 -8531587 + (ACCG)n Simple_repeat Simple_repeat 4 41 0 3 707 250 284 0 0 chr3L 16011999 16012080 -8531477 + ROO_I LTR Pao 652 732 -7524 3 707 273 98 0 0 chr3L 16012795 16012836 -8530721 + (CTG)n Simple_repeat Simple_repeat 3 43 0 3 707 189 0 0 0 chr3L 16013018 16013039 -8530518 + (CAG)n Simple_repeat Simple_repeat 3 23 0 3 707 474 88 0 0 chr3L 16014182 16014250 -8529307 + (CAT)n Simple_repeat Simple_repeat 3 70 0 3 707 27 49 0 0 chr3L 16014851 16014892 -8528665 + AT_rich Low_complexity Low_complexity 1 41 0 3 707 21 57 0 0 chr3L 16015018 16015053 -8528504 + AT_rich Low_complexity Low_complexity 1 35 0 3 707 228 181 10 162 chr3L 16015138 16015237 -8528320 - ROO_I LTR Pao -7518 738 655 3 707 234 219 0 27 chr3L 16015529 16015597 -8527960 + T-rich Low_complexity Low_complexity 1 66 0 3 707 29 0 0 0 chr3L 16016037 16016066 -8527491 + AT_rich Low_complexity Low_complexity 1 29 0 3 707 188 200 20 0 chr3L 16016497 16016547 -8527010 + (CAG)n Simple_repeat Simple_repeat 3 53 0 3 707 21 36 0 0 chr3L 16016852 16016880 -8526677 + AT_rich Low_complexity Low_complexity 1 28 0 3 707 26 50 0 0 chr3L 16017083 16017123 -8526434 + AT_rich Low_complexity Low_complexity 1 40 0 3 707 200 188 0 0 chr3L 16018527 16018559 -8524998 + (CAG)n Simple_repeat Simple_repeat 3 34 0 3 707 34 0 0 0 chr3L 16018923 16018957 -8524600 + AT_rich Low_complexity Low_complexity 1 34 0 3 707 28 29 0 0 chr3L 16019141 16019176 -8524381 + AT_rich Low_complexity Low_complexity 1 35 0 3 707 261 128 0 0 chr3L 16019326 16019373 -8524184 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 707 23 68 0 0 chr3L 16019724 16019768 -8523789 + AT_rich Low_complexity Low_complexity 1 44 0 3 707 209 204 0 0 chr3L 16020658 16020707 -8522850 + T-rich Low_complexity Low_complexity 1 49 0 3 707 183 80 0 0 chr3L 16022211 16022236 -8521321 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 707 204 156 22 0 chr3L 16025303 16025348 -8518209 + (TTTA)n Simple_repeat Simple_repeat 2 47 0 3 707 183 100 0 0 chr3L 16025473 16025503 -8518054 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 3 707 21 71 0 0 chr3L 16025872 16025914 -8517643 + AT_rich Low_complexity Low_complexity 1 42 0 3 707 22 35 0 0 chr3L 16026341 16026370 -8517187 + AT_rich Low_complexity Low_complexity 1 29 0 3 707 24 0 0 0 chr3L 16026581 16026605 -8516952 + AT_rich Low_complexity Low_complexity 1 24 0 3 707 36 0 0 0 chr3L 16026990 16027026 -8516531 + AT_rich Low_complexity Low_complexity 1 36 0 3 707 195 69 0 0 chr3L 16034859 16034888 -8508669 + (A)n Simple_repeat Simple_repeat 1 29 0 3 707 248 214 29 0 chr3L 16035806 16035876 -8507681 + A-rich Low_complexity Low_complexity 5 76 0 3 707 182 156 22 0 chr3L 16035997 16036042 -8507515 + (CAAGC)n Simple_repeat Simple_repeat 2 47 0 3 707 209 128 0 25 chr3L 16036235 16036275 -8507282 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 707 219 88 0 0 chr3L 16036760 16036794 -8506763 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 707 186 128 0 0 chr3L 16040446 16040485 -8503072 + (TC)n Simple_repeat Simple_repeat 1 39 0 3 707 245 169 0 17 chr3L 16043313 16043373 -8500184 + GA-rich Low_complexity Low_complexity 2 60 0 3 707 232 229 43 0 chr3L 16045315 16045385 -8498172 + (TG)n Simple_repeat Simple_repeat 1 73 0 3 707 207 100 0 0 chr3L 16046038 16046068 -8497489 + (CACG)n Simple_repeat Simple_repeat 1 30 0 3 707 210 150 0 0 chr3L 16046768 16046808 -8496749 + (TAAAA)n Simple_repeat Simple_repeat 3 42 0 3 707 22 0 0 0 chr3L 16049582 16049604 -8493953 + AT_rich Low_complexity Low_complexity 1 22 0 3 707 309 26 0 0 chr3L 16050594 16050632 -8492925 + (CGAAT)n Simple_repeat Simple_repeat 4 41 0 3 707 189 94 0 0 chr3L 16051280 16051312 -8492245 + (TTA)n Simple_repeat Simple_repeat 3 34 0 3 707 216 167 20 20 chr3L 16052365 16052414 -8491143 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 707 249 159 0 0 chr3L 16054503 16054547 -8489010 + (GGTTG)n Simple_repeat Simple_repeat 3 46 0 3 707 26 0 0 0 chr3L 16055160 16055186 -8488371 + AT_rich Low_complexity Low_complexity 1 26 0 3 707 202 211 0 53 chr3L 16056544 16056619 -8486938 + (TCTCTG)n Simple_repeat Simple_repeat 1 71 0 3 707 219 114 0 0 chr3L 16056700 16056735 -8486822 + (ATG)n Simple_repeat Simple_repeat 1 35 0 3 707 260 188 0 15 chr3L 16058009 16058074 -8485483 + (CCCG)n Simple_repeat Simple_repeat 1 64 0 3 707 263 275 0 0 chr3L 16058240 16058309 -8485248 + (CAA)n Simple_repeat Simple_repeat 1 69 0 3 707 192 143 0 0 chr3L 16058343 16058385 -8485172 + (CAA)n Simple_repeat Simple_repeat 3 44 0 3 707 207 69 0 0 chr3L 16058446 16058475 -8485082 + (CAG)n Simple_repeat Simple_repeat 1 29 0 3 707 183 100 0 0 chr3L 16058702 16058732 -8484825 + (TAAAAA)n Simple_repeat Simple_repeat 6 35 0 3 707 207 259 0 0 chr3L 16059868 16059926 -8483631 + (CAA)n Simple_repeat Simple_repeat 1 58 0 3 707 27 29 0 0 chr3L 16062449 16062483 -8481074 + AT_rich Low_complexity Low_complexity 1 34 0 3 707 21 0 0 0 chr3L 16063908 16063929 -8479628 + AT_rich Low_complexity Low_complexity 1 21 0 3 707 236 250 23 23 chr3L 16068911 16068997 -8474560 + (CACCAT)n Simple_repeat Simple_repeat 1 86 0 3 707 186 103 0 0 chr3L 16070648 16070677 -8472880 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 707 180 111 0 0 chr3L 16072689 16072716 -8470841 + (A)n Simple_repeat Simple_repeat 1 27 0 3 707 243 61 0 0 chr3L 16073298 16073331 -8470226 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 707 243 173 37 0 chr3L 16074427 16074508 -8469049 + (TA)n Simple_repeat Simple_repeat 2 85 0 3 707 24 0 0 0 chr3L 16076619 16076643 -8466914 + AT_rich Low_complexity Low_complexity 1 24 0 3 707 30 27 0 0 chr3L 16080708 16080745 -8462812 + AT_rich Low_complexity Low_complexity 1 37 0 3 707 23 0 0 0 chr3L 16080978 16081001 -8462556 + AT_rich Low_complexity Low_complexity 1 23 0 3 707 21 36 0 0 chr3L 16082816 16082844 -8460713 + AT_rich Low_complexity Low_complexity 1 28 0 3 707 208 100 58 39 chr3L 16083805 16083857 -8459700 + (CGCTG)n Simple_repeat Simple_repeat 5 57 0 3 707 35 0 0 0 chr3L 16087034 16087069 -8456488 + AT_rich Low_complexity Low_complexity 1 35 0 3 707 35 41 0 0 chr3L 16090741 16090790 -8452767 + AT_rich Low_complexity Low_complexity 1 49 0 3 707 30 27 0 0 chr3L 16091533 16091570 -8451987 + AT_rich Low_complexity Low_complexity 1 37 0 3 707 29 104 0 0 chr3L 16093159 16093265 -8450292 + AT_rich Low_complexity Low_complexity 1 106 0 3 707 32 43 0 0 chr3L 16099532 16099578 -8443979 + AT_rich Low_complexity Low_complexity 1 46 0 3 707 29 0 0 0 chr3L 16099670 16099699 -8443858 + AT_rich Low_complexity Low_complexity 1 29 0 3 707 22 0 0 0 chr3L 16105873 16105895 -8437662 + AT_rich Low_complexity Low_complexity 1 22 0 3 707 246 156 0 0 chr3L 16107766 16107811 -8435746 + (CAG)n Simple_repeat Simple_repeat 1 45 0 3 707 21 36 0 0 chr3L 16108286 16108314 -8435243 + AT_rich Low_complexity Low_complexity 1 28 0 3 707 249 226 23 23 chr3L 16109335 16109421 -8434136 + ROO_I LTR Pao 643 728 -7528 3 707 243 61 0 0 chr3L 16109519 16109552 -8434005 + (CCA)n Simple_repeat Simple_repeat 1 33 0 3 707 255 173 99 0 chr3L 16109578 16109659 -8433898 + ROO_I LTR Pao 656 744 -7512 3 707 37 62 0 0 chr3L 16111515 16111580 -8431977 + AT_rich Low_complexity Low_complexity 1 65 0 3 707 208 281 12 24 chr3L 16113462 16113546 -8430011 + A-rich Low_complexity Low_complexity 3 85 0 3 707 26 30 0 0 chr3L 16113632 16113665 -8429892 + AT_rich Low_complexity Low_complexity 1 33 0 3 707 26 82 0 0 chr3L 16114396 16114457 -8429100 + AT_rich Low_complexity Low_complexity 1 61 0 3 707 200 184 21 65 chr3L 16114577 16114670 -8428887 + (TTAA)n Simple_repeat Simple_repeat 4 92 0 3 707 27 29 0 0 chr3L 16114951 16114985 -8428572 + AT_rich Low_complexity Low_complexity 1 34 0 3 708 27 0 0 0 chr3L 16122250 16122277 -8421280 + AT_rich Low_complexity Low_complexity 1 27 0 3 708 22 35 0 0 chr3L 16122409 16122438 -8421119 + AT_rich Low_complexity Low_complexity 1 29 0 3 708 24 0 0 0 chr3L 16124062 16124086 -8419471 + AT_rich Low_complexity Low_complexity 1 24 0 3 708 225 148 71 36 chr3L 16124834 16124918 -8418639 + (TATAA)n Simple_repeat Simple_repeat 2 88 0 3 708 23 0 0 0 chr3L 16125000 16125023 -8418534 + AT_rich Low_complexity Low_complexity 1 23 0 3 708 22 0 0 0 chr3L 16131333 16131355 -8412202 + AT_rich Low_complexity Low_complexity 1 22 0 3 708 221 247 45 57 chr3L 16131490 16131666 -8411891 + (TTTAA)n Simple_repeat Simple_repeat 1 174 0 3 708 336 48 0 0 chr3L 16133251 16133293 -8410264 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 708 397 249 16 48 chr3L 16134703 16134889 -8408668 + (CTG)n Simple_repeat Simple_repeat 1 180 0 3 708 204 262 12 23 chr3L 16134839 16134925 -8408632 + (TTG)n Simple_repeat Simple_repeat 1 85 0 3 708 22 70 0 0 chr3L 16137279 16137322 -8406235 + AT_rich Low_complexity Low_complexity 1 43 0 3 708 191 36 36 0 chr3L 16138354 16138382 -8405175 + (CATA)n Simple_repeat Simple_repeat 4 32 0 3 708 211 219 0 0 chr3L 16138497 16138538 -8405019 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 708 225 196 0 0 chr3L 16140526 16140577 -8402980 + A-rich Low_complexity Low_complexity 1 51 0 3 708 213 159 0 0 chr3L 16141393 16141437 -8402120 + CT-rich Low_complexity Low_complexity 2 45 0 3 708 271 182 0 38 chr3L 16141540 16141620 -8401937 - ROO_I LTR Pao -7518 738 662 3 708 351 265 0 0 chr3L 16141860 16141962 -8401595 - ROO_I LTR Pao -7514 742 641 3 708 23 0 0 0 chr3L 16144079 16144102 -8399455 + AT_rich Low_complexity Low_complexity 1 23 0 3 708 219 69 0 0 chr3L 16144677 16144706 -8398851 + (TA)n Simple_repeat Simple_repeat 2 30 0 3 708 209 247 55 0 chr3L 16144979 16145052 -8398505 + (CAGAC)n Simple_repeat Simple_repeat 4 80 0 3 708 267 54 0 0 chr3L 16146112 16146149 -8397408 + (CAG)n Simple_repeat Simple_repeat 1 37 0 3 708 22 35 0 0 chr3L 16146332 16146361 -8397196 + AT_rich Low_complexity Low_complexity 1 29 0 3 708 202 224 0 0 chr3L 16146381 16146430 -8397127 + T-rich Low_complexity Low_complexity 4 52 0 3 708 210 71 0 0 chr3L 16149805 16149833 -8393724 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 708 183 42 0 0 chr3L 16149987 16150011 -8393546 + (A)n Simple_repeat Simple_repeat 1 24 0 3 708 207 0 0 0 chr3L 16150689 16150712 -8392845 + (TG)n Simple_repeat Simple_repeat 1 23 0 3 708 204 97 0 0 chr3L 16150794 16150825 -8392732 + (CA)n Simple_repeat Simple_repeat 2 32 0 3 708 243 0 0 0 chr3L 16154240 16154267 -8389290 + (T)n Simple_repeat Simple_repeat 1 27 0 3 708 188 167 21 0 chr3L 16155292 16155340 -8388217 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 708 183 42 0 0 chr3L 16155475 16155499 -8388058 + (GA)n Simple_repeat Simple_repeat 2 25 0 3 708 235 175 0 0 chr3L 16158060 16158100 -8385457 - DNAREP1_DM LINE Penelope -536 58 19 3 708 23 97 0 0 chr3L 16158233 16158305 -8385252 + AT_rich Low_complexity Low_complexity 1 72 0 3 708 30 0 0 0 chr3L 16159970 16160000 -8383557 + AT_rich Low_complexity Low_complexity 1 30 0 3 708 24 53 0 0 chr3L 16162120 16162158 -8381399 + AT_rich Low_complexity Low_complexity 1 38 0 3 708 30 0 0 0 chr3L 16162714 16162744 -8380813 + AT_rich Low_complexity Low_complexity 1 30 0 3 708 21 71 0 0 chr3L 16163093 16163135 -8380422 + AT_rich Low_complexity Low_complexity 1 42 0 3 708 285 257 0 13 chr3L 16163529 16163604 -8379953 - DNAREP1_DM LINE Penelope -501 93 20 3 708 33 0 0 0 chr3L 16163604 16163637 -8379920 + AT_rich Low_complexity Low_complexity 1 33 0 3 708 26 0 0 0 chr3L 16163792 16163818 -8379739 + AT_rich Low_complexity Low_complexity 1 26 0 3 708 21 36 0 0 chr3L 16164816 16164844 -8378713 + AT_rich Low_complexity Low_complexity 1 28 0 3 708 22 35 0 0 chr3L 16166201 16166230 -8377327 + AT_rich Low_complexity Low_complexity 1 29 0 3 708 220 274 0 0 chr3L 16167036 16167109 -8376448 + A-rich Low_complexity Low_complexity 1 73 0 3 708 189 107 0 0 chr3L 16167155 16167183 -8376374 + (CTG)n Simple_repeat Simple_repeat 2 29 0 3 708 198 71 0 0 chr3L 16167209 16167237 -8376320 + (CGA)n Simple_repeat Simple_repeat 2 29 0 3 708 191 204 19 0 chr3L 16167451 16167505 -8376052 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 708 222 0 25 50 chr3L 16167991 16168031 -8375526 + (TTATA)n Simple_repeat Simple_repeat 5 43 0 3 708 249 119 0 0 chr3L 16168520 16168562 -8374995 + (CTG)n Simple_repeat Simple_repeat 3 44 0 3 708 186 103 0 0 chr3L 16171747 16171776 -8371781 + (CAA)n Simple_repeat Simple_repeat 3 31 0 3 708 180 152 0 0 chr3L 16171939 16171972 -8371585 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 708 180 0 0 0 chr3L 16174158 16174178 -8369379 + (CAGAG)n Simple_repeat Simple_repeat 4 23 0 3 708 255 31 0 0 chr3L 16175613 16175645 -8367912 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 3 708 225 250 0 0 chr3L 16175765 16175829 -8367728 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 708 192 40 0 0 chr3L 16175885 16175910 -8367647 + (CACCG)n Simple_repeat Simple_repeat 5 29 0 3 708 209 195 0 0 chr3L 16176018 16176059 -8367498 + (TG)n Simple_repeat Simple_repeat 1 41 0 3 708 21 57 0 0 chr3L 16176341 16176376 -8367181 + AT_rich Low_complexity Low_complexity 1 35 0 3 708 234 0 0 0 chr3L 16177262 16177288 -8366269 + (T)n Simple_repeat Simple_repeat 1 26 0 3 708 43623 2 0 0 chr3L 16177297 16182008 -8361549 - BS2 LINE Jockey 0 4721 11 3 708 225 65 0 0 chr3L 16182221 16182252 -8361305 + (TCC)n Simple_repeat Simple_repeat 1 31 0 3 708 29 78 0 0 chr3L 16182789 16182853 -8360704 + AT_rich Low_complexity Low_complexity 1 64 0 3 708 22 0 0 0 chr3L 16183438 16183460 -8360097 + AT_rich Low_complexity Low_complexity 1 22 0 3 708 26 30 0 0 chr3L 16183584 16183617 -8359940 + AT_rich Low_complexity Low_complexity 1 33 0 3 708 22 35 0 0 chr3L 16183636 16183665 -8359892 + AT_rich Low_complexity Low_complexity 1 29 0 3 708 237 197 15 29 chr3L 16183924 16183992 -8359565 + (CCCA)n Simple_repeat Simple_repeat 4 70 0 3 708 23 0 0 0 chr3L 16184692 16184715 -8358842 + AT_rich Low_complexity Low_complexity 1 23 0 3 708 180 0 0 0 chr3L 16185109 16185129 -8358428 + (CAA)n Simple_repeat Simple_repeat 3 22 0 3 708 189 94 0 0 chr3L 16186165 16186197 -8357360 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 708 183 100 0 0 chr3L 16187026 16187056 -8356501 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 3 708 30 0 0 0 chr3L 16188016 16188046 -8355511 + AT_rich Low_complexity Low_complexity 1 30 0 3 708 235 214 0 0 chr3L 16188987 16189043 -8354514 + (GGATG)n Simple_repeat Simple_repeat 4 59 0 3 708 26 30 0 0 chr3L 16189574 16189607 -8353950 + AT_rich Low_complexity Low_complexity 1 33 0 3 708 22 56 0 0 chr3L 16190480 16190516 -8353041 + AT_rich Low_complexity Low_complexity 1 36 0 3 708 24 32 0 0 chr3L 16190538 16190569 -8352988 + AT_rich Low_complexity Low_complexity 1 31 0 3 708 318 152 630 0 chr3L 16190707 16190813 -8352744 + DNAREP1_DM LINE Penelope 429 594 0 3 708 35 71 0 0 chr3L 16192087 16192157 -8351400 + AT_rich Low_complexity Low_complexity 1 70 0 3 708 22 56 0 0 chr3L 16193016 16193052 -8350505 + AT_rich Low_complexity Low_complexity 1 36 0 3 708 23 33 0 0 chr3L 16194916 16194946 -8348611 + AT_rich Low_complexity Low_complexity 1 30 0 3 708 206 62 0 30 chr3L 16197221 16197254 -8346303 + (CGA)n Simple_repeat Simple_repeat 1 32 0 3 708 207 171 0 0 chr3L 16198106 16198141 -8345416 + (CAG)n Simple_repeat Simple_repeat 3 37 0 3 708 32 26 0 0 chr3L 16199915 16199954 -8343603 + AT_rich Low_complexity Low_complexity 1 39 0 3 708 327 113 0 0 chr3L 16200304 16200357 -8343200 + (CAT)n Simple_repeat Simple_repeat 1 53 0 3 708 204 163 23 0 chr3L 16201672 16201715 -8341842 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 708 204 283 0 0 chr3L 16202011 16202064 -8341493 + (CA)n Simple_repeat Simple_repeat 2 54 0 3 708 31 88 0 0 chr3L 16202398 16202478 -8341079 + AT_rich Low_complexity Low_complexity 1 80 0 3 708 24 0 0 0 chr3L 16202945 16202969 -8340588 + AT_rich Low_complexity Low_complexity 1 24 0 3 708 23 0 0 0 chr3L 16204193 16204216 -8339341 + AT_rich Low_complexity Low_complexity 1 23 0 3 708 197 146 21 0 chr3L 16204612 16204660 -8338897 + GA-rich Low_complexity Low_complexity 1 49 0 3 708 29 47 0 0 chr3L 16205130 16205173 -8338384 + AT_rich Low_complexity Low_complexity 1 43 0 3 708 228 259 0 47 chr3L 16206426 16206511 -8337046 + (CTG)n Simple_repeat Simple_repeat 3 83 0 3 708 180 281 0 0 chr3L 16206611 16206700 -8336857 + (ATG)n Simple_repeat Simple_repeat 3 91 0 3 708 21 0 0 0 chr3L 16207515 16207536 -8336021 + AT_rich Low_complexity Low_complexity 1 21 0 3 708 234 156 0 0 chr3L 16208346 16208391 -8335166 + (TCG)n Simple_repeat Simple_repeat 1 45 0 3 708 23 33 0 0 chr3L 16211976 16212006 -8331551 + AT_rich Low_complexity Low_complexity 1 30 0 3 708 195 69 0 0 chr3L 16212364 16212393 -8331164 + (A)n Simple_repeat Simple_repeat 1 29 0 3 708 24 0 0 0 chr3L 16212892 16212916 -8330641 + AT_rich Low_complexity Low_complexity 1 24 0 3 708 24 0 0 0 chr3L 16213416 16213440 -8330117 + AT_rich Low_complexity Low_complexity 1 24 0 3 708 21 0 0 0 chr3L 16214543 16214564 -8328993 + AT_rich Low_complexity Low_complexity 1 21 0 3 708 225 94 0 0 chr3L 16214871 16214903 -8328654 + (CAA)n Simple_repeat Simple_repeat 1 32 0 3 708 221 128 21 0 chr3L 16215603 16215650 -8327907 + (CAA)n Simple_repeat Simple_repeat 2 49 0 3 708 180 0 0 0 chr3L 16215857 16215877 -8327680 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 708 21 0 0 0 chr3L 16216456 16216477 -8327080 + AT_rich Low_complexity Low_complexity 1 21 0 3 708 22 70 0 0 chr3L 16221927 16221970 -8321587 + AT_rich Low_complexity Low_complexity 1 43 0 3 708 22 35 0 0 chr3L 16222005 16222034 -8321523 + AT_rich Low_complexity Low_complexity 1 29 0 3 708 21 0 0 0 chr3L 16224827 16224848 -8318709 + AT_rich Low_complexity Low_complexity 1 21 0 3 708 249 253 169 0 chr3L 16230356 16230439 -8313118 + DNAREP1_DM LINE Penelope 436 532 -62 3 708 310 139 35 147 chr3L 16230498 16230641 -8312916 - Jockey2 LINE Jockey -3 3425 3299 3 708 24 0 0 0 chr3L 16231613 16231637 -8311920 + AT_rich Low_complexity Low_complexity 1 24 0 3 708 25 0 0 0 chr3L 16233097 16233122 -8310435 + AT_rich Low_complexity Low_complexity 1 25 0 3 708 192 213 0 0 chr3L 16234916 16234977 -8308580 + (TG)n Simple_repeat Simple_repeat 1 61 0 3 708 25 51 0 0 chr3L 16235292 16235331 -8308226 + AT_rich Low_complexity Low_complexity 1 39 0 3 708 189 121 0 0 chr3L 16237129 16237162 -8306395 + (GA)n Simple_repeat Simple_repeat 2 34 0 3 708 248 57 0 28 chr3L 16238654 16238690 -8304867 - PROTOP_B DNA P -614 539 505 3 708 25 0 0 0 chr3L 16238811 16238836 -8304721 + AT_rich Low_complexity Low_complexity 1 25 0 3 708 21 36 0 0 chr3L 16240434 16240462 -8303095 + AT_rich Low_complexity Low_complexity 1 28 0 3 708 294 29 0 0 chr3L 16242869 16242904 -8300653 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 708 200 304 14 0 chr3L 16245049 16245118 -8298439 + (CTG)n Simple_repeat Simple_repeat 2 71 0 3 708 35 0 0 0 chr3L 16247216 16247251 -8296306 + AT_rich Low_complexity Low_complexity 1 35 0 3 708 21 0 0 0 chr3L 16250977 16250998 -8292559 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 205 258 0 0 chr3L 16253391 16253457 -8290100 + T-rich Low_complexity Low_complexity 3 68 0 3 709 180 0 0 0 chr3L 16253507 16253527 -8290030 + (TTA)n Simple_repeat Simple_repeat 1 20 0 3 709 22 0 0 0 chr3L 16257241 16257263 -8286294 + AT_rich Low_complexity Low_complexity 1 22 0 3 709 282 327 0 0 chr3L 16262769 16262873 -8280684 + (CTG)n Simple_repeat Simple_repeat 3 106 0 3 709 24 0 0 0 chr3L 16263199 16263223 -8280334 + AT_rich Low_complexity Low_complexity 1 24 0 3 709 26 30 0 0 chr3L 16269016 16269049 -8274508 + AT_rich Low_complexity Low_complexity 1 33 0 3 709 23 86 0 0 chr3L 16269986 16270044 -8273513 + AT_rich Low_complexity Low_complexity 1 58 0 3 709 22 94 0 0 chr3L 16272204 16272268 -8271289 + AT_rich Low_complexity Low_complexity 1 64 0 3 709 23 33 0 0 chr3L 16273936 16273966 -8269591 + AT_rich Low_complexity Low_complexity 1 30 0 3 709 216 336 8 8 chr3L 16274504 16274633 -8268924 + (CAG)n Simple_repeat Simple_repeat 2 130 0 3 709 232 125 20 20 chr3L 16275547 16275596 -8267961 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 709 21 57 0 0 chr3L 16277621 16277656 -8265901 + AT_rich Low_complexity Low_complexity 1 35 0 3 709 282 296 9 9 chr3L 16277991 16278107 -8265450 + (CAG)n Simple_repeat Simple_repeat 3 118 0 3 709 27 0 0 0 chr3L 16278791 16278818 -8264739 + AT_rich Low_complexity Low_complexity 1 27 0 3 709 273 109 0 0 chr3L 16281606 16281652 -8261905 + (TC)n Simple_repeat Simple_repeat 2 47 0 3 709 23 54 0 0 chr3L 16282450 16282487 -8261070 + AT_rich Low_complexity Low_complexity 1 37 0 3 709 429 179 102 51 chr3L 16282513 16282631 -8260926 - DNAREP1_DM LINE Penelope -461 133 10 3 709 206 225 0 59 chr3L 16283497 16283582 -8259975 + (TGG)n Simple_repeat Simple_repeat 3 82 0 3 709 22 56 0 0 chr3L 16295312 16295348 -8248209 + AT_rich Low_complexity Low_complexity 1 36 0 3 709 439 177 0 0 chr3L 16296821 16296900 -8246657 + DNAREP1_DM LINE Penelope 6 84 -510 3 709 470 147 333 0 chr3L 16296920 16297049 -8246508 + DNAREP1_DM LINE Penelope 251 422 -172 3 709 31 0 0 0 chr3L 16299264 16299295 -8244262 + AT_rich Low_complexity Low_complexity 1 31 0 3 709 306 65 16 31 chr3L 16300425 16300489 -8243068 + (TATAA)n Simple_repeat Simple_repeat 3 65 0 3 709 27 49 0 0 chr3L 16302712 16302753 -8240804 + AT_rich Low_complexity Low_complexity 1 41 0 3 709 36 23 0 0 chr3L 16302812 16302855 -8240702 + AT_rich Low_complexity Low_complexity 1 43 0 3 709 25 0 0 0 chr3L 16304280 16304305 -8239252 + AT_rich Low_complexity Low_complexity 1 25 0 3 709 21 0 0 0 chr3L 16306931 16306952 -8236605 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 24 67 0 0 chr3L 16306984 16307029 -8236528 + AT_rich Low_complexity Low_complexity 1 45 0 3 709 198 71 0 0 chr3L 16308862 16308890 -8234667 + (TATG)n Simple_repeat Simple_repeat 2 29 0 3 709 50 0 0 0 chr3L 16309896 16309946 -8233611 + AT_rich Low_complexity Low_complexity 1 50 0 3 709 207 196 0 0 chr3L 16311325 16311371 -8232186 + (CTG)n Simple_repeat Simple_repeat 1 46 0 3 709 35 24 0 0 chr3L 16313777 16313819 -8229738 + AT_rich Low_complexity Low_complexity 1 42 0 3 709 26 30 0 0 chr3L 16314246 16314279 -8229278 + AT_rich Low_complexity Low_complexity 1 33 0 3 709 597 170 123 45 chr3L 16317644 16317798 -8225759 + DNAREP1_DM LINE Penelope 398 563 -31 3 709 21 0 0 0 chr3L 16322507 16322528 -8221029 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 21 57 0 0 chr3L 16326473 16326508 -8217049 + AT_rich Low_complexity Low_complexity 1 35 0 3 709 180 158 0 0 chr3L 16328093 16328131 -8215426 + (CAT)n Simple_repeat Simple_repeat 2 39 0 3 709 189 0 0 0 chr3L 16328835 16328856 -8214701 + (CAG)n Simple_repeat Simple_repeat 3 23 0 3 709 42 20 0 0 chr3L 16329627 16329676 -8213881 + AT_rich Low_complexity Low_complexity 1 49 0 3 709 21 0 0 0 chr3L 16330547 16330568 -8212989 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 180 158 0 0 chr3L 16335438 16335476 -8208081 + (CAAT)n Simple_repeat Simple_repeat 2 39 0 3 709 183 188 0 0 chr3L 16336118 16336166 -8207391 + (CACCAT)n Simple_repeat Simple_repeat 4 51 0 3 709 49 43 0 0 chr3L 16338278 16338348 -8205209 + AT_rich Low_complexity Low_complexity 1 70 0 3 709 426 114 0 0 chr3L 16338670 16338749 -8204808 + (TA)n Simple_repeat Simple_repeat 2 80 0 3 709 24 53 0 0 chr3L 16338821 16338859 -8204698 + AT_rich Low_complexity Low_complexity 1 38 0 3 709 21 0 0 0 chr3L 16340843 16340864 -8202693 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 25 31 0 0 chr3L 16341044 16341076 -8202481 + AT_rich Low_complexity Low_complexity 1 32 0 3 709 34 0 0 0 chr3L 16349139 16349173 -8194384 + AT_rich Low_complexity Low_complexity 1 34 0 3 709 21 0 0 0 chr3L 16352335 16352356 -8191201 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 268 267 0 13 chr3L 16354686 16354762 -8188795 + (TTG)n Simple_repeat Simple_repeat 3 77 0 3 709 24 32 0 0 chr3L 16355296 16355327 -8188230 + AT_rich Low_complexity Low_complexity 1 31 0 3 709 22 0 0 0 chr3L 16357504 16357526 -8186031 + AT_rich Low_complexity Low_complexity 1 22 0 3 709 21 0 0 0 chr3L 16361193 16361214 -8182343 + AT_rich Low_complexity Low_complexity 1 21 0 3 709 29 28 0 0 chr3L 16361274 16361310 -8182247 + AT_rich Low_complexity Low_complexity 1 36 0 3 709 23 33 0 0 chr3L 16365506 16365536 -8178021 + AT_rich Low_complexity Low_complexity 1 30 0 3 709 257 230 0 39 chr3L 16365626 16365703 -8177854 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 3 709 23 0 0 0 chr3L 16366419 16366442 -8177115 + AT_rich Low_complexity Low_complexity 1 23 0 3 709 29 28 0 0 chr3L 16366609 16366645 -8176912 + AT_rich Low_complexity Low_complexity 1 36 0 3 709 32 0 0 0 chr3L 16366865 16366897 -8176660 + AT_rich Low_complexity Low_complexity 1 32 0 3 709 228 185 0 0 chr3L 16368197 16368251 -8175306 + (TTG)n Simple_repeat Simple_repeat 1 54 0 3 709 22 0 0 0 chr3L 16383665 16383687 -8159870 + AT_rich Low_complexity Low_complexity 1 22 0 3 710 34 65 0 0 chr3L 16386164 16386226 -8157331 + AT_rich Low_complexity Low_complexity 1 62 0 3 710 246 62 0 0 chr3L 16386745 16386777 -8156780 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 3 710 218 247 24 12 chr3L 16387663 16387745 -8155812 + (CAGTT)n Simple_repeat Simple_repeat 3 85 0 3 710 195 114 0 0 chr3L 16391672 16391707 -8151850 + (TAA)n Simple_repeat Simple_repeat 3 37 0 3 710 27 62 0 0 chr3L 16394634 16394682 -8148875 + AT_rich Low_complexity Low_complexity 1 48 0 3 710 207 0 0 0 chr3L 16395887 16395910 -8147647 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 3 710 21 0 0 0 chr3L 16396674 16396695 -8146862 + AT_rich Low_complexity Low_complexity 1 21 0 3 710 23 54 0 0 chr3L 16396996 16397033 -8146524 + AT_rich Low_complexity Low_complexity 1 37 0 3 710 252 59 0 0 chr3L 16397064 16397098 -8146459 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 3 710 21 71 0 0 chr3L 16397124 16397166 -8146391 + AT_rich Low_complexity Low_complexity 1 42 0 3 710 222 208 0 0 chr3L 16401677 16401725 -8141832 + CT-rich Low_complexity Low_complexity 2 49 0 3 710 232 255 0 18 chr3L 16402097 16402153 -8141404 + (CA)n Simple_repeat Simple_repeat 2 56 0 3 710 205 243 13 26 chr3L 16404505 16404581 -8138976 + T-rich Low_complexity Low_complexity 2 76 0 3 710 201 147 0 0 chr3L 16404684 16404718 -8138839 + (GA)n Simple_repeat Simple_repeat 1 34 0 3 710 21 36 0 0 chr3L 16405667 16405695 -8137862 + AT_rich Low_complexity Low_complexity 1 28 0 3 710 23 33 0 0 chr3L 16415753 16415783 -8127774 + AT_rich Low_complexity Low_complexity 1 30 0 3 710 22 0 0 0 chr3L 16418476 16418498 -8125059 + AT_rich Low_complexity Low_complexity 1 22 0 3 710 22 56 0 0 chr3L 16420516 16420552 -8123005 + AT_rich Low_complexity Low_complexity 1 36 0 3 710 245 178 0 27 chr3L 16420670 16420745 -8122812 + (AGTTG)n Simple_repeat Simple_repeat 1 73 0 3 710 198 0 0 0 chr3L 16420948 16420970 -8122587 + (TAGG)n Simple_repeat Simple_repeat 1 22 0 3 710 250 257 14 0 chr3L 16421790 16421860 -8121697 + (TTCA)n Simple_repeat Simple_repeat 1 71 0 3 710 281 102 0 39 chr3L 16424333 16424384 -8119173 + (TTTG)n Simple_repeat Simple_repeat 1 49 0 3 710 24 0 0 0 chr3L 16424935 16424959 -8118598 + AT_rich Low_complexity Low_complexity 1 24 0 3 710 26 50 0 0 chr3L 16425171 16425211 -8118346 + AT_rich Low_complexity Low_complexity 1 40 0 3 710 30 69 0 0 chr3L 16428449 16428507 -8115050 + AT_rich Low_complexity Low_complexity 1 58 0 3 710 237 33 0 0 chr3L 16428734 16428764 -8114793 + (TTC)n Simple_repeat Simple_repeat 3 32 0 3 710 244 161 99 0 chr3L 16429096 16429177 -8114380 - HOBO DNA hAT -1065 1951 1863 3 710 231 103 0 0 chr3L 16429463 16429502 -8114055 + (GCTG)n Simple_repeat Simple_repeat 1 39 0 3 710 258 56 0 0 chr3L 16429532 16429568 -8113989 + (GCTG)n Simple_repeat Simple_repeat 2 37 0 3 710 26 64 0 0 chr3L 16430252 16430299 -8113258 + AT_rich Low_complexity Low_complexity 1 47 0 3 710 213 121 0 0 chr3L 16430499 16430532 -8113025 + (CAT)n Simple_repeat Simple_repeat 1 33 0 3 710 180 0 0 0 chr3L 16430837 16430857 -8112700 + (T)n Simple_repeat Simple_repeat 1 20 0 3 710 189 0 0 0 chr3L 16431119 16431140 -8112417 + (ATG)n Simple_repeat Simple_repeat 2 22 0 3 710 180 111 0 0 chr3L 16433163 16433190 -8110367 + (CTG)n Simple_repeat Simple_repeat 3 29 0 3 710 195 42 0 0 chr3L 16434550 16434574 -8108983 + (T)n Simple_repeat Simple_repeat 1 24 0 3 710 225 65 0 0 chr3L 16435661 16435692 -8107865 + (GATTG)n Simple_repeat Simple_repeat 1 31 0 3 710 20770 5 0 2 chr3L 16437001 16439286 -8104271 + DOC LINE Jockey 2445 4725 0 3 710 219 204 18 18 chr3L 16442585 16442640 -8100917 + (TTG)n Simple_repeat Simple_repeat 2 56 0 3 710 22 0 0 0 chr3L 16443062 16443084 -8100473 + AT_rich Low_complexity Low_complexity 1 22 0 3 710 243 164 0 0 chr3L 16443401 16443462 -8100095 + (CTG)n Simple_repeat Simple_repeat 3 63 0 3 710 183 42 0 0 chr3L 16444776 16444800 -8098757 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 3 710 29 70 0 0 chr3L 16446187 16446244 -8097313 + AT_rich Low_complexity Low_complexity 1 57 0 3 710 249 33 0 0 chr3L 16447208 16447238 -8096319 + (CTG)n Simple_repeat Simple_repeat 3 32 0 3 710 289 215 38 0 chr3L 16447374 16447453 -8096104 + (CAG)n Simple_repeat Simple_repeat 1 82 0 3 710 22 70 0 0 chr3L 16447585 16447628 -8095929 + AT_rich Low_complexity Low_complexity 1 43 0 3 710 249 108 0 0 chr3L 16447833 16447870 -8095687 + (CTG)n Simple_repeat Simple_repeat 2 38 0 3 710 207 0 0 0 chr3L 16448116 16448139 -8095418 + (CTG)n Simple_repeat Simple_repeat 3 25 0 3 710 211 111 0 27 chr3L 16448772 16448809 -8094748 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 710 236 172 0 17 chr3L 16448989 16449048 -8094509 + (TTTAG)n Simple_repeat Simple_repeat 3 60 0 3 710 258 156 0 0 chr3L 16449195 16449240 -8094317 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 710 235 63 79 0 chr3L 16451409 16451472 -8092085 + (TA)n Simple_repeat Simple_repeat 2 69 0 3 710 282 87 0 0 chr3L 16451894 16451940 -8091617 + (T)n Simple_repeat Simple_repeat 1 46 0 3 710 201 162 0 0 chr3L 16455538 16455575 -8087982 + A-rich Low_complexity Low_complexity 1 37 0 3 710 23 0 0 0 chr3L 16457004 16457027 -8086530 + AT_rich Low_complexity Low_complexity 1 23 0 3 710 29 70 0 0 chr3L 16457162 16457219 -8086338 + AT_rich Low_complexity Low_complexity 1 57 0 3 710 278 67 22 0 chr3L 16457599 16457644 -8085913 + (ATGGTG)n Simple_repeat Simple_repeat 3 48 0 3 710 186 167 0 0 chr3L 16459610 16459646 -8083911 + T-rich Low_complexity Low_complexity 1 36 0 3 710 285 29 0 0 chr3L 16465859 16465893 -8077664 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 3 710 23 0 0 0 chr3L 16469155 16469178 -8074379 + AT_rich Low_complexity Low_complexity 1 23 0 3 710 23 33 0 0 chr3L 16469557 16469587 -8073970 + AT_rich Low_complexity Low_complexity 1 30 0 3 710 31 58 0 0 chr3L 16469915 16469967 -8073590 + AT_rich Low_complexity Low_complexity 1 52 0 3 710 246 160 0 0 chr3L 16470377 16470427 -8073130 + (CTG)n Simple_repeat Simple_repeat 3 52 0 3 710 189 0 0 0 chr3L 16470449 16470470 -8073087 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 3 710 261 219 13 40 chr3L 16470600 16470676 -8072881 + (CTG)n Simple_repeat Simple_repeat 1 74 0 3 710 21 36 0 0 chr3L 16471815 16471843 -8071714 + AT_rich Low_complexity Low_complexity 1 28 0 3 710 21 36 0 0 chr3L 16472228 16472256 -8071301 + AT_rich Low_complexity Low_complexity 1 28 0 3 710 234 136 0 0 chr3L 16473371 16473415 -8070142 + (TTG)n Simple_repeat Simple_repeat 1 44 0 3 710 232 154 19 37 chr3L 16476109 16476163 -8067394 + (CAG)n Simple_repeat Simple_repeat 1 53 0 3 710 305 82 0 20 chr3L 16476318 16476368 -8067189 + (CGAAT)n Simple_repeat Simple_repeat 3 51 0 3 710 35 78 0 0 chr3L 16476882 16476959 -8066598 + AT_rich Low_complexity Low_complexity 1 77 0 3 710 210 196 20 0 chr3L 16477398 16477449 -8066108 + A-rich Low_complexity Low_complexity 3 54 0 3 710 228 164 0 64 chr3L 16479365 16479443 -8064114 + ROO_I LTR Pao 657 729 -7527 3 710 32 0 0 0 chr3L 16481090 16481122 -8062435 + AT_rich Low_complexity Low_complexity 1 32 0 3 710 243 103 0 0 chr3L 16481621 16481660 -8061897 + (TTG)n Simple_repeat Simple_repeat 2 40 0 3 710 204 330 0 60 chr3L 16481869 16481985 -8061572 + G-rich Low_complexity Low_complexity 2 110 0 3 710 21 0 0 0 chr3L 16482155 16482176 -8061381 + AT_rich Low_complexity Low_complexity 1 21 0 3 710 267 31 0 0 chr3L 16482745 16482777 -8060780 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 710 216 277 21 21 chr3L 16483326 16483422 -8060135 + (TTGGGG)n Simple_repeat Simple_repeat 1 96 0 3 710 3914 7 0 2 chr3L 16487148 16487589 -8055968 - LINEJ1_DM LINE Jockey 0 5020 4581 3 710 22 35 0 0 chr3L 16488693 16488722 -8054835 + AT_rich Low_complexity Low_complexity 1 29 0 3 710 24 96 0 0 chr3L 16489598 16489671 -8053886 + AT_rich Low_complexity Low_complexity 1 73 0 3 710 22 35 0 0 chr3L 16489888 16489917 -8053640 + AT_rich Low_complexity Low_complexity 1 29 0 3 710 23 0 0 0 chr3L 16490540 16490563 -8052994 + AT_rich Low_complexity Low_complexity 1 23 0 3 710 29 70 0 0 chr3L 16490589 16490646 -8052911 + AT_rich Low_complexity Low_complexity 1 57 0 3 710 29 0 0 0 chr3L 16493956 16493985 -8049572 + AT_rich Low_complexity Low_complexity 1 29 0 3 710 22 0 0 0 chr3L 16494423 16494445 -8049112 + AT_rich Low_complexity Low_complexity 1 22 0 3 710 21 0 0 0 chr3L 16494900 16494921 -8048636 + AT_rich Low_complexity Low_complexity 1 21 0 3 710 22 88 0 0 chr3L 16495084 16495141 -8048416 + AT_rich Low_complexity Low_complexity 1 57 0 3 710 29 60 0 0 chr3L 16497707 16497757 -8045800 + AT_rich Low_complexity Low_complexity 1 50 0 3 710 23 0 0 0 chr3L 16498660 16498683 -8044874 + AT_rich Low_complexity Low_complexity 1 23 0 3 710 33 25 0 0 chr3L 16500171 16500211 -8043346 + AT_rich Low_complexity Low_complexity 1 40 0 3 710 222 37 0 0 chr3L 16505559 16505586 -8037971 + (TG)n Simple_repeat Simple_repeat 2 28 0 3 710 188 167 0 20 chr3L 16508728 16508777 -8034780 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 710 32 0 0 0 chr3L 16509185 16509217 -8034340 + AT_rich Low_complexity Low_complexity 1 32 0 3 710 228 189 0 19 chr3L 16514683 16514737 -8028820 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 3 711 47292 5 0 1 chr3L 16516429 16521555 -8022002 + BS LINE Jockey 5 5126 0 3 711 216 143 0 0 chr3L 16521592 16521634 -8021923 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 711 25 31 0 0 chr3L 16523350 16523382 -8020175 + AT_rich Low_complexity Low_complexity 1 32 0 3 711 180 0 0 0 chr3L 16524057 16524077 -8019480 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 711 264 59 0 0 chr3L 16526223 16526257 -8017300 + (ATTCG)n Simple_repeat Simple_repeat 2 35 0 3 711 34 99 0 0 chr3L 16526551 16526662 -8016895 + AT_rich Low_complexity Low_complexity 1 111 0 3 711 25 0 0 0 chr3L 16527719 16527744 -8015813 + AT_rich Low_complexity Low_complexity 1 25 0 3 711 23 33 0 0 chr3L 16528706 16528736 -8014821 + AT_rich Low_complexity Low_complexity 1 30 0 3 711 21 0 0 0 chr3L 16534568 16534589 -8008968 + AT_rich Low_complexity Low_complexity 1 21 0 3 711 21 36 0 0 chr3L 16534770 16534798 -8008759 + AT_rich Low_complexity Low_complexity 1 28 0 3 711 23 54 0 0 chr3L 16538440 16538477 -8005080 + AT_rich Low_complexity Low_complexity 1 37 0 3 711 180 0 0 0 chr3L 16538957 16538977 -8004580 + (TTA)n Simple_repeat Simple_repeat 3 22 0 3 711 22 35 0 0 chr3L 16545211 16545240 -7998317 + AT_rich Low_complexity Low_complexity 1 29 0 3 711 27 29 0 0 chr3L 16545285 16545319 -7998238 + AT_rich Low_complexity Low_complexity 1 34 0 3 711 24 0 0 0 chr3L 16547591 16547615 -7995942 + AT_rich Low_complexity Low_complexity 1 24 0 3 711 24 53 0 0 chr3L 16553016 16553054 -7990503 + AT_rich Low_complexity Low_complexity 1 38 0 3 711 24 0 0 0 chr3L 16555147 16555171 -7988386 + AT_rich Low_complexity Low_complexity 1 24 0 3 711 21 36 0 0 chr3L 16558070 16558098 -7985459 + AT_rich Low_complexity Low_complexity 1 28 0 3 711 24 0 0 0 chr3L 16559450 16559474 -7984083 + AT_rich Low_complexity Low_complexity 1 24 0 3 711 24 32 0 0 chr3L 16565951 16565982 -7977575 + AT_rich Low_complexity Low_complexity 1 31 0 3 711 22 35 0 0 chr3L 16566268 16566297 -7977260 + AT_rich Low_complexity Low_complexity 1 29 0 3 711 2533 170 41 110 chr3L 16570093 16570793 -7972764 - TART LINE telomeric -9792 4685 4034 3 711 29 0 0 0 chr3L 16588843 16588872 -7954685 + AT_rich Low_complexity Low_complexity 1 29 0 3 711 211 145 0 28 chr3L 16588946 16589017 -7954540 + (TAA)n Simple_repeat Simple_repeat 2 70 0 3 711 23 0 0 0 chr3L 16589017 16589040 -7954517 + AT_rich Low_complexity Low_complexity 1 23 0 3 711 24 0 0 0 chr3L 16595901 16595925 -7947632 + AT_rich Low_complexity Low_complexity 1 24 0 3 711 62 14 0 0 chr3L 16596652 16596721 -7946836 + AT_rich Low_complexity Low_complexity 1 69 0 3 711 27 73 0 0 chr3L 16603604 16603659 -7939898 + AT_rich Low_complexity Low_complexity 1 55 0 3 711 21 0 0 0 chr3L 16606342 16606363 -7937194 + AT_rich Low_complexity Low_complexity 1 21 0 3 711 200 306 0 0 chr3L 16606969 16607031 -7936526 + (TTA)n Simple_repeat Simple_repeat 2 63 0 3 711 22 0 0 0 chr3L 16608511 16608533 -7935024 + AT_rich Low_complexity Low_complexity 1 22 0 3 711 21 36 0 0 chr3L 16608654 16608682 -7934875 + AT_rich Low_complexity Low_complexity 1 28 0 3 711 21 0 0 0 chr3L 16608776 16608797 -7934760 + AT_rich Low_complexity Low_complexity 1 21 0 3 711 3591 5 7 7 chr3L 16609664 16610078 -7933479 + DM297_LTR LTR Gypsy 1 414 0 3 711 30691 5 0 0 chr3L 16610078 16614098 -7929459 + DM297_I LTR Gypsy 1 4021 -2146 3 711 3735 14 0 0 chr3L 16614077 16614521 -7929036 + DM297_I LTR Gypsy 5724 6167 0 3 711 3614 5 7 7 chr3L 16614521 16614935 -7928622 + DM297_LTR LTR Gypsy 1 414 0 3 711 180 152 0 0 chr3L 16615149 16615182 -7928375 + (TA)n Simple_repeat Simple_repeat 2 34 0 3 711 206 183 0 61 chr3L 16619431 16619530 -7924027 + (TTG)n Simple_repeat Simple_repeat 3 95 0 3 711 180 77 0 0 chr3L 16620497 16620523 -7923034 + (TCG)n Simple_repeat Simple_repeat 2 27 0 3 711 215 240 0 0 chr3L 16620530 16620580 -7922977 + (CAT)n Simple_repeat Simple_repeat 3 52 0 3 711 211 282 0 0 chr3L 16626275 16626346 -7917211 + T-rich Low_complexity Low_complexity 1 71 0 3 711 26 30 0 0 chr3L 16630524 16630557 -7913000 + AT_rich Low_complexity Low_complexity 1 33 0 3 711 23 0 0 0 chr3L 16630739 16630762 -7912795 + AT_rich Low_complexity Low_complexity 1 23 0 3 711 24 32 0 0 chr3L 16631996 16632027 -7911530 + AT_rich Low_complexity Low_complexity 1 31 0 3 711 21 36 0 0 chr3L 16637121 16637149 -7906408 + AT_rich Low_complexity Low_complexity 1 28 0 3 711 212 207 52 0 chr3L 16638863 16638921 -7904636 + CT-rich Low_complexity Low_complexity 1 61 0 3 711 21 0 0 0 chr3L 16641876 16641897 -7901660 + AT_rich Low_complexity Low_complexity 1 21 0 3 711 27 0 0 0 chr3L 16644757 16644784 -7898773 + AT_rich Low_complexity Low_complexity 1 27 0 3 712 24 32 0 0 chr3L 16648297 16648328 -7895229 + AT_rich Low_complexity Low_complexity 1 31 0 3 712 32 0 0 0 chr3L 16652695 16652727 -7890830 + AT_rich Low_complexity Low_complexity 1 32 0 3 712 26 0 0 0 chr3L 16653566 16653592 -7889965 + AT_rich Low_complexity Low_complexity 1 26 0 3 712 232 270 0 63 chr3L 16655097 16655192 -7888365 + DNAREP1_DM LINE Penelope 504 592 -2 3 712 24 0 0 0 chr3L 16658069 16658093 -7885464 + AT_rich Low_complexity Low_complexity 1 24 0 3 712 192 182 0 0 chr3L 16661107 16661151 -7882406 + GA-rich Low_complexity Low_complexity 2 45 0 3 712 180 0 0 0 chr3L 16662751 16662771 -7880786 + (ATTCG)n Simple_repeat Simple_repeat 2 21 0 3 712 27 49 0 0 chr3L 16665842 16665883 -7877674 + AT_rich Low_complexity Low_complexity 1 41 0 3 712 29 0 0 0 chr3L 16666774 16666803 -7876754 + AT_rich Low_complexity Low_complexity 1 29 0 3 712 228 35 0 0 chr3L 16669707 16669736 -7873821 + (TG)n Simple_repeat Simple_repeat 2 30 0 3 712 26 64 0 0 chr3L 16670086 16670133 -7873424 + AT_rich Low_complexity Low_complexity 1 47 0 3 712 29 0 0 0 chr3L 16670735 16670764 -7872793 + AT_rich Low_complexity Low_complexity 1 29 0 3 712 263 72 0 23 chr3L 16670798 16670841 -7872716 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 712 324 245 0 0 chr3L 16671574 16671668 -7871889 + (CTG)n Simple_repeat Simple_repeat 1 94 0 3 712 214 178 22 0 chr3L 16672385 16672430 -7871127 + (CTG)n Simple_repeat Simple_repeat 1 46 0 3 712 231 114 0 0 chr3L 16672623 16672658 -7870899 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 712 210 191 0 0 chr3L 16672704 16672751 -7870806 + (CTG)n Simple_repeat Simple_repeat 1 47 0 3 712 337 171 34 0 chr3L 16672846 16672934 -7870623 - ROO_I LTR Pao -7513 743 653 3 712 310 91 18 18 chr3L 16676677 16676733 -7866824 + (CTG)n Simple_repeat Simple_repeat 1 56 0 3 712 273 173 8 141 chr3L 16676786 16676907 -7866650 + ROO_I LTR Pao 631 735 -7521 3 712 32 91 0 0 chr3L 16677086 16677174 -7866383 + AT_rich Low_complexity Low_complexity 1 88 0 3 712 2196 4 58 0 chr3L 16677174 16677402 -7866155 + Copia_LTR LTR Copia 1 228 -48 3 712 216 0 0 0 chr3L 16677402 16677426 -7866131 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 3 712 2196 4 58 0 chr3L 16677426 16677458 -7866099 + Copia_LTR LTR Copia 229 274 -2 3 712 41777 1 0 0 chr3L 16677458 16682053 -7861504 + Copia_I LTR Copia 1 4593 0 3 712 2196 4 58 0 chr3L 16682053 16682281 -7861276 + Copia_LTR LTR Copia 1 228 -48 3 712 216 0 0 0 chr3L 16682281 16682305 -7861252 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 3 712 2196 4 58 0 chr3L 16682305 16682337 -7861220 + Copia_LTR LTR Copia 229 274 -2 3 712 220 282 0 0 chr3L 16682657 16682728 -7860829 + T-rich Low_complexity Low_complexity 1 71 0 3 712 531 43 0 0 chr3L 16683283 16683353 -7860204 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 712 288 0 0 0 chr3L 16685905 16685937 -7857620 + (CAG)n Simple_repeat Simple_repeat 2 33 0 3 712 21 71 0 0 chr3L 16686535 16686577 -7856980 + AT_rich Low_complexity Low_complexity 1 42 0 3 712 26 0 0 0 chr3L 16690367 16690393 -7853164 + AT_rich Low_complexity Low_complexity 1 26 0 3 712 21 57 0 0 chr3L 16693272 16693307 -7850250 + AT_rich Low_complexity Low_complexity 1 35 0 3 712 29 28 0 0 chr3L 16693895 16693931 -7849626 + AT_rich Low_complexity Low_complexity 1 36 0 3 712 33 0 0 0 chr3L 16700434 16700467 -7843090 + AT_rich Low_complexity Low_complexity 1 33 0 3 712 28 29 0 0 chr3L 16702893 16702928 -7840629 + AT_rich Low_complexity Low_complexity 1 35 0 3 712 30 0 0 0 chr3L 16702978 16703008 -7840549 + AT_rich Low_complexity Low_complexity 1 30 0 3 712 46 68 0 0 chr3L 16703513 16703601 -7839956 + AT_rich Low_complexity Low_complexity 1 88 0 3 712 205 125 24 24 chr3L 16707428 16707469 -7836088 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 3 712 217 222 0 0 chr3L 16710893 16710938 -7832619 + (CCA)n Simple_repeat Simple_repeat 3 47 0 3 712 203 233 0 0 chr3L 16715500 16715543 -7828014 + (CGA)n Simple_repeat Simple_repeat 3 45 0 3 712 25 0 0 0 chr3L 16718654 16718679 -7824878 + AT_rich Low_complexity Low_complexity 1 25 0 3 712 864 95 0 0 chr3L 16724085 16724211 -7819346 - BS LINE Jockey 0 5126 5001 3 712 21 36 0 0 chr3L 16727367 16727395 -7816162 + AT_rich Low_complexity Low_complexity 1 28 0 3 712 24 0 0 0 chr3L 16730280 16730304 -7813253 + AT_rich Low_complexity Low_complexity 1 24 0 3 712 311 152 0 17 chr3L 16733840 16733900 -7809657 - DNAREP1_DM LINE Penelope 0 594 536 3 712 288 227 107 0 chr3L 16734721 16734796 -7808761 + DNAREP1_DM LINE Penelope 497 579 -15 3 712 28 95 0 0 chr3L 16735027 16735111 -7808446 + AT_rich Low_complexity Low_complexity 1 84 0 3 712 36 40 0 0 chr3L 16735880 16735930 -7807627 + AT_rich Low_complexity Low_complexity 1 50 0 3 712 25 0 0 0 chr3L 16740826 16740851 -7802706 + AT_rich Low_complexity Low_complexity 1 25 0 3 712 39 60 0 0 chr3L 16742475 16742542 -7801015 + AT_rich Low_complexity Low_complexity 1 67 0 3 712 31 44 0 0 chr3L 16748390 16748435 -7795122 + AT_rich Low_complexity Low_complexity 1 45 0 3 712 213 154 0 0 chr3L 16749331 16749370 -7794187 + A-rich Low_complexity Low_complexity 1 39 0 3 712 26 30 0 0 chr3L 16749664 16749697 -7793860 + AT_rich Low_complexity Low_complexity 1 33 0 3 712 26 64 0 0 chr3L 16750611 16750658 -7792899 + AT_rich Low_complexity Low_complexity 1 47 0 3 712 21 0 0 0 chr3L 16751842 16751863 -7791694 + AT_rich Low_complexity Low_complexity 1 21 0 3 712 23 54 0 0 chr3L 16755404 16755441 -7788116 + AT_rich Low_complexity Low_complexity 1 37 0 3 712 21 57 0 0 chr3L 16758491 16758526 -7785031 + AT_rich Low_complexity Low_complexity 1 35 0 3 712 25 0 0 0 chr3L 16763512 16763537 -7780020 + AT_rich Low_complexity Low_complexity 1 25 0 3 712 21 36 0 0 chr3L 16763670 16763698 -7779859 + AT_rich Low_complexity Low_complexity 1 28 0 3 712 21 0 0 0 chr3L 16769736 16769757 -7773800 + AT_rich Low_complexity Low_complexity 1 21 0 3 712 22 0 0 0 chr3L 16772881 16772903 -7770654 + AT_rich Low_complexity Low_complexity 1 22 0 3 712 24 32 0 0 chr3L 16773007 16773038 -7770519 + AT_rich Low_complexity Low_complexity 1 31 0 3 712 217 227 0 0 chr3L 16773618 16773662 -7769895 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 712 28 61 0 0 chr3L 16774235 16774284 -7769273 + AT_rich Low_complexity Low_complexity 1 49 0 3 713 21 0 0 0 chr3L 16780130 16780151 -7763406 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 21 36 0 0 chr3L 16780458 16780486 -7763071 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 243 0 0 0 chr3L 16781238 16781265 -7762292 + (CAT)n Simple_repeat Simple_repeat 1 27 0 3 713 182 91 30 0 chr3L 16784959 16784992 -7758565 + (GAGTG)n Simple_repeat Simple_repeat 2 35 0 3 713 24 0 0 0 chr3L 16787800 16787824 -7755733 + AT_rich Low_complexity Low_complexity 1 24 0 3 713 22 35 0 0 chr3L 16790839 16790868 -7752689 + AT_rich Low_complexity Low_complexity 1 29 0 3 713 27 0 0 0 chr3L 16791227 16791254 -7752303 + AT_rich Low_complexity Low_complexity 1 27 0 3 713 25 31 0 0 chr3L 16793540 16793572 -7749985 + AT_rich Low_complexity Low_complexity 1 32 0 3 713 216 0 0 0 chr3L 16794480 16794504 -7749053 + (A)n Simple_repeat Simple_repeat 1 24 0 3 713 32 57 0 0 chr3L 16800021 16800074 -7743483 + AT_rich Low_complexity Low_complexity 1 53 0 3 713 25 0 0 0 chr3L 16800976 16801001 -7742556 + AT_rich Low_complexity Low_complexity 1 25 0 3 713 21 0 0 0 chr3L 16803015 16803036 -7740521 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 21 0 0 0 chr3L 16807695 16807716 -7735841 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 244 200 33 0 chr3L 16808702 16808762 -7734795 + (GAGTG)n Simple_repeat Simple_repeat 1 62 0 3 713 26 0 0 0 chr3L 16810413 16810439 -7733118 + AT_rich Low_complexity Low_complexity 1 26 0 3 713 23 0 0 0 chr3L 16812841 16812864 -7730693 + AT_rich Low_complexity Low_complexity 1 23 0 3 713 28 29 0 0 chr3L 16813284 16813319 -7730238 + AT_rich Low_complexity Low_complexity 1 35 0 3 713 28 71 0 0 chr3L 16814971 16815027 -7728530 + AT_rich Low_complexity Low_complexity 1 56 0 3 713 185 0 40 0 chr3L 16815077 16815102 -7728455 + (CATAA)n Simple_repeat Simple_repeat 5 30 0 3 713 39 92 0 0 chr3L 16817622 16817731 -7725826 + AT_rich Low_complexity Low_complexity 1 109 0 3 713 186 43 0 0 chr3L 16818127 16818150 -7725407 + (GGGAGA)n Simple_repeat Simple_repeat 1 23 0 3 713 38 81 0 0 chr3L 16818289 16818376 -7725181 + AT_rich Low_complexity Low_complexity 1 87 0 3 713 31 0 0 0 chr3L 16819565 16819596 -7723961 + AT_rich Low_complexity Low_complexity 1 31 0 3 713 35 54 0 0 chr3L 16820838 16820894 -7722663 + AT_rich Low_complexity Low_complexity 1 56 0 3 713 189 0 0 0 chr3L 16821526 16821547 -7722010 + (T)n Simple_repeat Simple_repeat 1 21 0 3 713 255 31 0 0 chr3L 16822247 16822279 -7721278 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 713 31 76 0 0 chr3L 16822567 16822633 -7720924 + AT_rich Low_complexity Low_complexity 1 66 0 3 713 267 114 0 0 chr3L 16823202 16823246 -7720311 + (GGGAGA)n Simple_repeat Simple_repeat 4 47 0 3 713 21 36 0 0 chr3L 16826333 16826361 -7717196 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 60 27 0 0 chr3L 16826435 16826509 -7717048 + AT_rich Low_complexity Low_complexity 1 74 0 3 713 23 0 0 0 chr3L 16827061 16827084 -7716473 + AT_rich Low_complexity Low_complexity 1 23 0 3 713 294 87 0 0 chr3L 16828136 16828182 -7715375 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 713 21 36 0 0 chr3L 16829798 16829826 -7713731 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 207 0 0 0 chr3L 16834058 16834081 -7709476 + (CAGC)n Simple_repeat Simple_repeat 1 23 0 3 713 191 145 0 46 chr3L 16838168 16838233 -7705324 + T-rich Low_complexity Low_complexity 1 62 0 3 713 22 0 0 0 chr3L 16838234 16838256 -7705301 + AT_rich Low_complexity Low_complexity 1 22 0 3 713 230 139 125 12 chr3L 16840698 16840778 -7702779 + ROO_I LTR Pao 639 727 -7529 3 713 238 191 42 42 chr3L 16844794 16844865 -7698692 + TART_B1 LINE telomeric 122 192 -10462 3 713 273 147 8 136 chr3L 16844857 16844975 -7698582 + ROO_I LTR Pao 641 743 -7513 3 713 21 0 0 0 chr3L 16846522 16846543 -7697014 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 25 65 0 0 chr3L 16846573 16846619 -7696938 + AT_rich Low_complexity Low_complexity 1 46 0 3 713 182 150 25 0 chr3L 16847116 16847156 -7696401 + (CAA)n Simple_repeat Simple_repeat 1 41 0 3 713 21 36 0 0 chr3L 16855980 16856008 -7687549 + AT_rich Low_complexity Low_complexity 1 28 0 3 713 22 70 0 0 chr3L 16858146 16858189 -7685368 + AT_rich Low_complexity Low_complexity 1 43 0 3 713 207 282 0 40 chr3L 16858746 16858820 -7684737 + (CGTG)n Simple_repeat Simple_repeat 3 73 0 3 713 26 82 0 0 chr3L 16859516 16859577 -7683980 + AT_rich Low_complexity Low_complexity 1 61 0 3 713 28 71 0 0 chr3L 16863935 16863991 -7679566 + AT_rich Low_complexity Low_complexity 1 56 0 3 713 48 0 0 0 chr3L 16868548 16868596 -7674961 + AT_rich Low_complexity Low_complexity 1 48 0 3 713 21 95 0 0 chr3L 16869678 16869741 -7673816 + AT_rich Low_complexity Low_complexity 1 63 0 3 713 24 32 0 0 chr3L 16869808 16869839 -7673718 + AT_rich Low_complexity Low_complexity 1 31 0 3 713 189 74 0 0 chr3L 16872062 16872089 -7671468 + (CCA)n Simple_repeat Simple_repeat 1 27 0 3 713 35 41 0 0 chr3L 16873097 16873146 -7670411 + AT_rich Low_complexity Low_complexity 1 49 0 3 713 31 58 0 0 chr3L 16874505 16874557 -7669000 + AT_rich Low_complexity Low_complexity 1 52 0 3 713 22 80 0 0 chr3L 16876722 16876772 -7666785 + AT_rich Low_complexity Low_complexity 1 50 0 3 713 203 135 54 0 chr3L 16879441 16879478 -7664079 + (ACTG)n Simple_repeat Simple_repeat 3 41 0 3 713 204 200 0 0 chr3L 16879489 16879534 -7664023 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 713 186 43 0 0 chr3L 16881699 16881722 -7661835 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 3 713 27 29 0 0 chr3L 16884434 16884468 -7659089 + AT_rich Low_complexity Low_complexity 1 34 0 3 713 189 0 0 0 chr3L 16884637 16884658 -7658899 + (TTA)n Simple_repeat Simple_repeat 1 21 0 3 713 225 0 0 0 chr3L 16888770 16888795 -7654762 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 713 21 0 0 0 chr3L 16888975 16888996 -7654561 + AT_rich Low_complexity Low_complexity 1 21 0 3 713 23 33 0 0 chr3L 16891406 16891436 -7652121 + AT_rich Low_complexity Low_complexity 1 30 0 3 713 22 0 0 0 chr3L 16892162 16892184 -7651373 + AT_rich Low_complexity Low_complexity 1 22 0 3 713 224 152 0 21 chr3L 16899932 16899979 -7643578 + (CAAGC)n Simple_repeat Simple_repeat 2 47 0 3 713 216 0 0 0 chr3L 16902188 16902212 -7641345 + (TTG)n Simple_repeat Simple_repeat 2 25 0 3 713 202 100 38 57 chr3L 16902462 16902515 -7641042 + (TTA)n Simple_repeat Simple_repeat 1 52 0 3 713 204 265 0 0 chr3L 16907513 16907562 -7635995 + (CCCGA)n Simple_repeat Simple_repeat 5 53 0 3 713 186 43 0 0 chr3L 16907982 16908005 -7635552 + (T)n Simple_repeat Simple_repeat 1 23 0 3 714 195 42 0 0 chr3L 16914902 16914926 -7628631 + (ATG)n Simple_repeat Simple_repeat 3 26 0 3 714 24 77 0 0 chr3L 16915887 16915939 -7627618 + AT_rich Low_complexity Low_complexity 1 52 0 3 714 183 80 0 0 chr3L 16916207 16916232 -7627325 + (CAAGC)n Simple_repeat Simple_repeat 4 28 0 3 714 27 0 0 0 chr3L 16917047 16917074 -7626483 + AT_rich Low_complexity Low_complexity 1 27 0 3 714 30 0 0 0 chr3L 16917292 16917322 -7626235 + AT_rich Low_complexity Low_complexity 1 30 0 3 714 26 50 0 0 chr3L 16919150 16919190 -7624367 + AT_rich Low_complexity Low_complexity 1 40 0 3 714 36 0 0 0 chr3L 16920023 16920059 -7623498 + AT_rich Low_complexity Low_complexity 1 36 0 3 714 21 0 0 0 chr3L 16920119 16920140 -7623417 + AT_rich Low_complexity Low_complexity 1 21 0 3 714 25 65 0 0 chr3L 16934511 16934557 -7609000 + AT_rich Low_complexity Low_complexity 1 46 0 3 714 183 129 0 0 chr3L 16934854 16934885 -7608672 + (CAG)n Simple_repeat Simple_repeat 2 32 0 3 714 31 58 0 0 chr3L 16938474 16938526 -7605031 + AT_rich Low_complexity Low_complexity 1 52 0 3 714 3964 2 0 2 chr3L 16938882 16939311 -7604246 + ROO_LTR LTR Pao 1 428 0 3 714 48500 1 2 0 chr3L 16939311 16947548 -7596009 + ROO_I LTR Pao 1 8256 0 3 714 3964 2 0 2 chr3L 16947548 16947977 -7595580 + ROO_LTR LTR Pao 1 428 0 3 714 284 0 28 0 chr3L 16948304 16948340 -7595217 + (TAA)n Simple_repeat Simple_repeat 2 38 0 3 714 204 135 0 0 chr3L 16954535 16954572 -7588985 + (CCA)n Simple_repeat Simple_repeat 1 37 0 3 714 21 0 0 0 chr3L 16955001 16955022 -7588535 + AT_rich Low_complexity Low_complexity 1 21 0 3 714 24 67 0 0 chr3L 16958382 16958427 -7585130 + AT_rich Low_complexity Low_complexity 1 45 0 3 714 24 32 0 0 chr3L 16961015 16961046 -7582511 + AT_rich Low_complexity Low_complexity 1 31 0 3 714 255 114 0 0 chr3L 16964590 16964634 -7578923 + (GAGTG)n Simple_repeat Simple_repeat 2 45 0 3 714 27 49 0 0 chr3L 16965262 16965303 -7578254 + AT_rich Low_complexity Low_complexity 1 41 0 3 714 28 61 0 0 chr3L 16966345 16966394 -7577163 + AT_rich Low_complexity Low_complexity 1 49 0 3 714 228 219 26 40 chr3L 16968107 16968183 -7575374 + T-rich Low_complexity Low_complexity 6 80 0 3 714 338 239 0 0 chr3L 16969312 16969404 -7574153 + ROO_I LTR Pao 643 734 -7522 3 714 24 0 0 0 chr3L 16970513 16970537 -7573020 + AT_rich Low_complexity Low_complexity 1 24 0 3 714 260 167 40 27 chr3L 16973840 16973914 -7569643 + ROO_I LTR Pao 660 734 -7522 3 714 23 54 0 0 chr3L 16977120 16977157 -7566400 + AT_rich Low_complexity Low_complexity 1 37 0 3 714 21 36 0 0 chr3L 16978669 16978697 -7564860 + AT_rich Low_complexity Low_complexity 1 28 0 3 714 180 77 0 0 chr3L 16980017 16980043 -7563514 + (TG)n Simple_repeat Simple_repeat 1 26 0 3 714 31 44 0 0 chr3L 16981430 16981475 -7562082 + AT_rich Low_complexity Low_complexity 1 45 0 3 714 26 30 0 0 chr3L 16982378 16982411 -7561146 + AT_rich Low_complexity Low_complexity 1 33 0 3 714 25 51 0 0 chr3L 16987572 16987611 -7555946 + AT_rich Low_complexity Low_complexity 1 39 0 3 714 406 167 0 0 chr3L 16992716 16992782 -7550775 + DNAREP1_DM LINE Penelope 353 418 -176 3 714 219 88 0 0 chr3L 16994425 16994459 -7549098 + (T)n Simple_repeat Simple_repeat 1 34 0 3 714 351 96 0 0 chr3L 16995556 16995608 -7547949 + (TA)n Simple_repeat Simple_repeat 2 53 0 3 714 216 162 0 0 chr3L 16995792 16995829 -7547728 + (CCGAA)n Simple_repeat Simple_repeat 1 37 0 3 714 180 0 0 0 chr3L 16995975 16995995 -7547562 + (TAA)n Simple_repeat Simple_repeat 2 21 0 3 714 32 81 0 0 chr3L 16996328 16996402 -7547155 + AT_rich Low_complexity Low_complexity 1 74 0 3 714 24 0 0 0 chr3L 16996428 16996452 -7547105 + AT_rich Low_complexity Low_complexity 1 24 0 3 714 37 39 0 0 chr3L 17000033 17000084 -7543473 + AT_rich Low_complexity Low_complexity 1 51 0 3 714 21 0 0 0 chr3L 17000218 17000239 -7543318 + AT_rich Low_complexity Low_complexity 1 21 0 3 714 198 0 0 0 chr3L 17001162 17001184 -7542373 + (GTATG)n Simple_repeat Simple_repeat 5 26 0 3 714 26 0 0 0 chr3L 17003705 17003731 -7539826 + AT_rich Low_complexity Low_complexity 1 26 0 3 714 192 184 0 0 chr3L 17004598 17004647 -7538910 + (TTG)n Simple_repeat Simple_repeat 2 50 0 3 714 23 33 0 0 chr3L 17005937 17005967 -7537590 + AT_rich Low_complexity Low_complexity 1 30 0 3 714 22 0 0 0 chr3L 17005974 17005996 -7537561 + AT_rich Low_complexity Low_complexity 1 22 0 3 714 27 0 0 0 chr3L 17009701 17009728 -7533829 + AT_rich Low_complexity Low_complexity 1 27 0 3 714 207 0 0 0 chr3L 17025322 17025345 -7518212 + (GA)n Simple_repeat Simple_repeat 1 23 0 3 714 238 220 0 0 chr3L 17027302 17027352 -7516205 + A-rich Low_complexity Low_complexity 1 50 0 3 714 981 32 0 0 chr3L 17028095 17028219 -7515338 + G2_DM LINE Jockey 2971 3094 -8 3 714 252 154 0 0 chr3L 17031430 17031482 -7512075 + (CTG)n Simple_repeat Simple_repeat 1 52 0 3 714 218 204 0 0 chr3L 17032837 17032886 -7510671 + T-rich Low_complexity Low_complexity 1 49 0 3 715 22 35 0 0 chr3L 17039743 17039772 -7503785 + AT_rich Low_complexity Low_complexity 1 29 0 3 715 22 0 0 0 chr3L 17039846 17039868 -7503689 + AT_rich Low_complexity Low_complexity 1 22 0 3 715 224 131 0 21 chr3L 17041181 17041228 -7502329 + (CA)n Simple_repeat Simple_repeat 2 47 0 3 715 208 139 0 0 chr3L 17041463 17041499 -7502058 + (A)n Simple_repeat Simple_repeat 1 36 0 3 715 30 45 0 0 chr3L 17042063 17042107 -7501450 + AT_rich Low_complexity Low_complexity 1 44 0 3 715 183 42 0 0 chr3L 17042797 17042821 -7500736 + (TA)n Simple_repeat Simple_repeat 2 25 0 3 715 207 114 0 0 chr3L 17042926 17042961 -7500596 + (TG)n Simple_repeat Simple_repeat 1 35 0 3 715 212 115 58 0 chr3L 17047648 17047700 -7495857 + (CTATA)n Simple_repeat Simple_repeat 3 57 0 3 715 23 0 0 0 chr3L 17049584 17049607 -7493950 + AT_rich Low_complexity Low_complexity 1 23 0 3 715 25 51 0 0 chr3L 17051714 17051753 -7491804 + AT_rich Low_complexity Low_complexity 1 39 0 3 715 318 26 0 0 chr3L 17051965 17052004 -7491553 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 715 185 146 21 0 chr3L 17052401 17052449 -7491108 + (TG)n Simple_repeat Simple_repeat 2 50 0 3 715 208 241 0 0 chr3L 17052544 17052598 -7490959 + (TTG)n Simple_repeat Simple_repeat 1 54 0 3 715 21 0 0 0 chr3L 17053659 17053680 -7489877 + AT_rich Low_complexity Low_complexity 1 21 0 3 715 263 248 10 19 chr3L 17053853 17053956 -7489601 + (TG)n Simple_repeat Simple_repeat 2 103 0 3 715 231 205 10 93 chr3L 17054771 17054868 -7488689 + T-rich Low_complexity Low_complexity 6 94 0 3 715 350 134 0 15 chr3L 17055401 17055469 -7488088 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 715 32 0 0 0 chr3L 17055606 17055638 -7487919 + AT_rich Low_complexity Low_complexity 1 32 0 3 715 198 0 0 0 chr3L 17055656 17055678 -7487879 + (TA)n Simple_repeat Simple_repeat 2 23 0 3 715 308 273 7 22 chr3L 17056264 17056399 -7487158 + T-rich Low_complexity Low_complexity 2 134 0 3 715 202 276 0 0 chr3L 17056767 17056825 -7486732 + (CAT)n Simple_repeat Simple_repeat 3 60 0 3 715 221 57 0 28 chr3L 17057756 17057792 -7485765 + (TA)n Simple_repeat Simple_repeat 2 36 0 3 715 198 156 0 0 chr3L 17058258 17058303 -7485254 + (TTG)n Simple_repeat Simple_repeat 2 46 0 3 715 21 0 0 0 chr3L 17058418 17058439 -7485118 + AT_rich Low_complexity Low_complexity 1 21 0 3 715 427 222 22 125 chr3L 17058498 17058606 -7484951 - ROO_I LTR Pao -7426 830 740 3 715 225 119 0 0 chr3L 17058606 17058648 -7484909 + (TG)n Simple_repeat Simple_repeat 2 43 0 3 715 427 222 22 125 chr3L 17058648 17058771 -7484786 - ROO_I LTR Pao -7517 739 623 3 715 208 303 0 11 chr3L 17058895 17058985 -7484572 + (TA)n Simple_repeat Simple_repeat 1 89 0 3 715 21 36 0 0 chr3L 17059514 17059542 -7484015 + AT_rich Low_complexity Low_complexity 1 28 0 3 715 21 57 0 0 chr3L 17059590 17059625 -7483932 + AT_rich Low_complexity Low_complexity 1 35 0 3 715 232 250 26 46 chr3L 17059738 17059889 -7483668 + T-rich Low_complexity Low_complexity 2 149 0 3 715 246 32 0 0 chr3L 17060051 17060082 -7483475 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 715 218 148 0 18 chr3L 17061723 17061778 -7481779 + (CAAAC)n Simple_repeat Simple_repeat 2 55 0 3 715 228 250 0 0 chr3L 17061894 17061954 -7481603 + T-rich Low_complexity Low_complexity 1 60 0 3 715 213 39 0 0 chr3L 17062192 17062218 -7481339 + (CGTAA)n Simple_repeat Simple_repeat 2 27 0 3 715 214 179 0 0 chr3L 17063810 17063849 -7479708 + (TG)n Simple_repeat Simple_repeat 2 40 0 3 715 251 211 26 13 chr3L 17064301 17064378 -7479179 + (TA)n Simple_repeat Simple_repeat 1 78 0 3 715 183 42 0 0 chr3L 17065415 17065439 -7478118 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 715 238 146 0 128 chr3L 17070306 17070400 -7473157 - ROO_I LTR Pao -7524 732 651 3 715 450 120 0 0 chr3L 17070540 17070615 -7472942 + (CTG)n Simple_repeat Simple_repeat 3 77 0 3 715 27 0 0 0 chr3L 17071986 17072013 -7471544 + AT_rich Low_complexity Low_complexity 1 27 0 3 715 22 0 0 0 chr3L 17072662 17072684 -7470873 + AT_rich Low_complexity Low_complexity 1 22 0 3 715 219 238 0 0 chr3L 17074299 17074341 -7469216 + (TCTG)n Simple_repeat Simple_repeat 1 42 0 3 715 225 0 0 0 chr3L 17074347 17074372 -7469185 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 715 330 87 0 0 chr3L 17077917 17077963 -7465594 + (ACTG)n Simple_repeat Simple_repeat 1 46 0 3 715 3969 2 0 2 chr3L 17078159 17078588 -7464969 + ROO_LTR LTR Pao 1 428 0 3 715 75133 1 3 0 chr3L 17078588 17086821 -7456736 + ROO_I LTR Pao 1 8256 0 3 715 3969 2 0 2 chr3L 17086821 17087250 -7456307 + ROO_LTR LTR Pao 1 428 0 3 715 315 96 0 0 chr3L 17090964 17091016 -7452541 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 715 234 0 0 0 chr3L 17092468 17092494 -7451063 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 715 366 61 0 0 chr3L 17093079 17093128 -7450429 + (GCTG)n Simple_repeat Simple_repeat 3 51 0 3 715 195 167 0 0 chr3L 17093583 17093625 -7449932 + CT-rich Low_complexity Low_complexity 2 43 0 3 715 273 29 0 0 chr3L 17093638 17093672 -7449885 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 715 249 159 0 0 chr3L 17095279 17095323 -7448234 + (TG)n Simple_repeat Simple_repeat 1 44 0 3 715 24 32 0 0 chr3L 17095930 17095961 -7447596 + AT_rich Low_complexity Low_complexity 1 31 0 3 715 189 0 0 0 chr3L 17097977 17097998 -7445559 + (CA)n Simple_repeat Simple_repeat 2 22 0 3 715 200 163 0 23 chr3L 17099853 17099897 -7443660 + CT-rich Low_complexity Low_complexity 3 45 0 3 715 26 0 0 0 chr3L 17101301 17101327 -7442230 + AT_rich Low_complexity Low_complexity 1 26 0 3 715 225 0 0 0 chr3L 17101483 17101508 -7442049 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 715 288 53 0 0 chr3L 17103767 17103805 -7439752 + (CAG)n Simple_repeat Simple_repeat 2 39 0 3 715 210 231 0 30 chr3L 17103898 17103965 -7439592 + (TCTG)n Simple_repeat Simple_repeat 3 67 0 3 715 201 94 0 0 chr3L 17105014 17105046 -7438511 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 715 219 254 17 0 chr3L 17105849 17105908 -7437649 + (TG)n Simple_repeat Simple_repeat 1 60 0 3 715 207 218 0 0 chr3L 17106005 17106060 -7437497 + (CATA)n Simple_repeat Simple_repeat 2 56 0 3 715 30 45 0 0 chr3L 17106472 17106516 -7437041 + AT_rich Low_complexity Low_complexity 1 44 0 3 715 21 0 0 0 chr3L 17109243 17109264 -7434293 + AT_rich Low_complexity Low_complexity 1 21 0 3 715 25 0 0 0 chr3L 17112802 17112827 -7430730 + AT_rich Low_complexity Low_complexity 1 25 0 3 715 251 191 0 14 chr3L 17113353 17113422 -7430135 + (CGAAA)n Simple_repeat Simple_repeat 3 70 0 3 715 24 0 0 0 chr3L 17113821 17113845 -7429712 + AT_rich Low_complexity Low_complexity 1 24 0 3 715 21 0 0 0 chr3L 17115050 17115071 -7428486 + AT_rich Low_complexity Low_complexity 1 21 0 3 715 210 245 0 0 chr3L 17116248 17116297 -7427260 + (TG)n Simple_repeat Simple_repeat 1 49 0 3 715 189 74 0 0 chr3L 17116339 17116366 -7427191 + (CTG)n Simple_repeat Simple_repeat 1 27 0 3 715 234 91 0 0 chr3L 17117157 17117190 -7426367 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 3 715 213 216 0 0 chr3L 17117674 17117725 -7425832 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 715 207 100 0 0 chr3L 17117838 17117868 -7425689 + (GA)n Simple_repeat Simple_repeat 1 30 0 3 715 186 71 0 0 chr3L 17118966 17118994 -7424563 + (CAG)n Simple_repeat Simple_repeat 3 30 0 3 715 189 0 0 0 chr3L 17119082 17119103 -7424454 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 715 192 143 0 0 chr3L 17120518 17120560 -7422997 + (TA)n Simple_repeat Simple_repeat 1 42 0 3 715 203 231 0 0 chr3L 17122252 17122291 -7421266 + C-rich Low_complexity Low_complexity 4 42 0 3 715 247 196 0 0 chr3L 17122409 17122460 -7421097 + (TG)n Simple_repeat Simple_repeat 1 51 0 3 715 24 32 0 0 chr3L 17123007 17123038 -7420519 + AT_rich Low_complexity Low_complexity 1 31 0 3 715 211 200 0 0 chr3L 17123140 17123190 -7420367 + GA-rich Low_complexity Low_complexity 1 50 0 3 715 27 0 0 0 chr3L 17124132 17124159 -7419398 + AT_rich Low_complexity Low_complexity 1 27 0 3 715 191 125 25 0 chr3L 17125691 17125731 -7417826 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 715 206 227 23 0 chr3L 17126124 17126168 -7417389 + (CTCCG)n Simple_repeat Simple_repeat 2 46 0 3 715 250 237 0 13 chr3L 17127458 17127535 -7416022 + (CA)n Simple_repeat Simple_repeat 1 76 0 3 715 255 173 0 0 chr3L 17128025 17128077 -7415480 + (AACTG)n Simple_repeat Simple_repeat 5 56 0 3 715 212 111 0 22 chr3L 17129218 17129264 -7414293 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 715 219 36 0 0 chr3L 17131361 17131389 -7412168 + (CGAAA)n Simple_repeat Simple_repeat 4 31 0 3 715 210 150 0 0 chr3L 17131788 17131828 -7411729 + (CTG)n Simple_repeat Simple_repeat 1 40 0 3 715 183 129 0 0 chr3L 17131828 17131859 -7411698 + (ACTG)n Simple_repeat Simple_repeat 2 32 0 3 715 204 240 0 0 chr3L 17132654 17132704 -7410853 + A-rich Low_complexity Low_complexity 1 50 0 3 715 189 107 0 0 chr3L 17133042 17133070 -7410487 + (CTG)n Simple_repeat Simple_repeat 1 28 0 3 715 207 184 0 0 chr3L 17133429 17133467 -7410090 + (TTCGG)n Simple_repeat Simple_repeat 3 40 0 3 715 30 45 0 0 chr3L 17134710 17134754 -7408803 + AT_rich Low_complexity Low_complexity 1 44 0 3 715 27 62 0 0 chr3L 17137203 17137251 -7406306 + AT_rich Low_complexity Low_complexity 1 48 0 3 715 308 289 0 0 chr3L 17139631 17139728 -7403829 + A-rich Low_complexity Low_complexity 1 97 0 3 715 254 240 13 13 chr3L 17140228 17140304 -7403253 + (CGG)n Simple_repeat Simple_repeat 3 78 0 3 715 180 152 0 0 chr3L 17140837 17140870 -7402687 + T-rich Low_complexity Low_complexity 4 36 0 3 715 186 133 0 0 chr3L 17142756 17142786 -7400771 + (CAT)n Simple_repeat Simple_repeat 1 30 0 3 715 229 204 0 0 chr3L 17142903 17142947 -7400610 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 715 243 0 0 0 chr3L 17144181 17144208 -7399349 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 715 227 204 0 0 chr3L 17144579 17144623 -7398934 + (AGTTG)n Simple_repeat Simple_repeat 3 46 0 3 715 189 0 0 0 chr3L 17146583 17146604 -7396953 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 715 225 0 0 0 chr3L 17148297 17148322 -7395235 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 715 239 220 0 0 chr3L 17150296 17150346 -7393211 + (CAG)n Simple_repeat Simple_repeat 1 50 0 3 715 189 154 0 0 chr3L 17150755 17150794 -7392763 + (CAAAC)n Simple_repeat Simple_repeat 5 43 0 3 715 23 0 0 0 chr3L 17153166 17153189 -7390368 + AT_rich Low_complexity Low_complexity 1 23 0 3 715 201 132 0 0 chr3L 17153582 17153620 -7389937 + (CAGTT)n Simple_repeat Simple_repeat 3 40 0 3 715 245 243 0 14 chr3L 17153885 17153956 -7389601 + (CA)n Simple_repeat Simple_repeat 1 70 0 3 715 33 90 0 0 chr3L 17155438 17155527 -7388030 + AT_rich Low_complexity Low_complexity 1 89 0 3 715 24 0 0 0 chr3L 17156365 17156389 -7387168 + AT_rich Low_complexity Low_complexity 1 24 0 3 715 232 287 11 11 chr3L 17156669 17156757 -7386800 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 715 24 53 0 0 chr3L 17158396 17158434 -7385123 + AT_rich Low_complexity Low_complexity 1 38 0 3 715 327 96 0 0 chr3L 17164040 17164092 -7379465 + (TG)n Simple_repeat Simple_repeat 1 52 0 3 715 180 125 0 0 chr3L 17166363 17166395 -7377162 + (TTTCG)n Simple_repeat Simple_repeat 3 34 0 3 715 33 66 0 0 chr3L 17166888 17166949 -7376608 + AT_rich Low_complexity Low_complexity 1 61 0 3 715 225 0 0 0 chr3L 17169160 17169185 -7374372 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 715 191 125 25 0 chr3L 17169407 17169447 -7374110 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 715 186 167 0 0 chr3L 17169624 17169660 -7373897 + (CAG)n Simple_repeat Simple_repeat 3 38 0 3 715 26 30 0 0 chr3L 17170243 17170276 -7373281 + AT_rich Low_complexity Low_complexity 1 33 0 3 716 32 0 0 0 chr3L 17173914 17173946 -7369611 + AT_rich Low_complexity Low_complexity 1 32 0 3 716 247 282 0 41 chr3L 17175336 17175458 -7368099 + A-rich Low_complexity Low_complexity 3 119 0 3 716 25 0 0 0 chr3L 17175482 17175507 -7368050 + AT_rich Low_complexity Low_complexity 1 25 0 3 716 29 60 0 0 chr3L 17176615 17176665 -7366892 + AT_rich Low_complexity Low_complexity 1 50 0 3 716 213 39 0 0 chr3L 17177107 17177133 -7366424 + (TTCCG)n Simple_repeat Simple_repeat 2 27 0 3 716 21 57 0 0 chr3L 17179318 17179353 -7364204 + AT_rich Low_complexity Low_complexity 1 35 0 3 716 198 0 0 0 chr3L 17179915 17179937 -7363620 + (TAA)n Simple_repeat Simple_repeat 3 24 0 3 716 198 118 0 0 chr3L 17179954 17179988 -7363569 + (CAAAC)n Simple_repeat Simple_repeat 2 35 0 3 716 219 178 0 22 chr3L 17181875 17181921 -7361636 + (CAGAGA)n Simple_repeat Simple_repeat 4 48 0 3 716 29 47 0 0 chr3L 17183149 17183192 -7360365 + AT_rich Low_complexity Low_complexity 1 43 0 3 716 186 143 0 0 chr3L 17185337 17185372 -7358185 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 3 716 23 0 0 0 chr3L 17185700 17185723 -7357834 + AT_rich Low_complexity Low_complexity 1 23 0 3 716 216 111 0 0 chr3L 17189816 17189852 -7353705 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 3 716 28 0 0 0 chr3L 17192114 17192142 -7351415 + AT_rich Low_complexity Low_complexity 1 28 0 3 716 273 167 0 0 chr3L 17192518 17192572 -7350985 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 716 23 0 0 0 chr3L 17193252 17193275 -7350282 + AT_rich Low_complexity Low_complexity 1 23 0 3 716 23 0 0 0 chr3L 17194134 17194157 -7349400 + AT_rich Low_complexity Low_complexity 1 23 0 3 716 197 108 27 0 chr3L 17195898 17195935 -7347622 + (CA)n Simple_repeat Simple_repeat 2 39 0 3 716 40 59 0 0 chr3L 17197608 17197676 -7345881 + AT_rich Low_complexity Low_complexity 1 68 0 3 716 222 105 0 0 chr3L 17198089 17198127 -7345430 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 716 203 188 20 20 chr3L 17199177 17199226 -7344331 + (CTTCG)n Simple_repeat Simple_repeat 4 52 0 3 716 186 118 0 0 chr3L 17200227 17200261 -7343296 + (CA)n Simple_repeat Simple_repeat 1 34 0 3 716 22 35 0 0 chr3L 17200764 17200793 -7342764 + AT_rich Low_complexity Low_complexity 1 29 0 3 716 216 143 0 0 chr3L 17201432 17201474 -7342083 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 716 301 261 0 0 chr3L 17205262 17205331 -7338226 + (CAG)n Simple_repeat Simple_repeat 1 69 0 3 716 212 195 24 0 chr3L 17205624 17205665 -7337892 + (CATA)n Simple_repeat Simple_repeat 1 42 0 3 716 237 33 0 0 chr3L 17207932 17207962 -7335595 + (TAA)n Simple_repeat Simple_repeat 3 32 0 3 716 189 0 0 0 chr3L 17208567 17208588 -7334969 + (TG)n Simple_repeat Simple_repeat 2 22 0 3 716 21 71 0 0 chr3L 17209020 17209062 -7334495 + AT_rich Low_complexity Low_complexity 1 42 0 3 716 180 0 0 0 chr3L 17211112 17211132 -7332425 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 3 716 207 0 0 0 chr3L 17211132 17211155 -7332402 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 716 264 137 0 0 chr3L 17212214 17212265 -7331292 + (CAGCT)n Simple_repeat Simple_repeat 1 51 0 3 716 213 39 0 0 chr3L 17213809 17213835 -7329722 + (TA)n Simple_repeat Simple_repeat 1 26 0 3 716 25 51 0 0 chr3L 17215671 17215710 -7327847 + AT_rich Low_complexity Low_complexity 1 39 0 3 716 235 160 20 0 chr3L 17217646 17217696 -7325861 + (TGGG)n Simple_repeat Simple_repeat 2 52 0 3 716 212 59 0 29 chr3L 17218650 17218685 -7324872 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 3 716 36 0 0 0 chr3L 17219596 17219632 -7323925 + AT_rich Low_complexity Low_complexity 1 36 0 3 716 183 139 0 0 chr3L 17219726 17219762 -7323795 + (CACCAT)n Simple_repeat Simple_repeat 4 39 0 3 716 25 51 0 0 chr3L 17221202 17221241 -7322316 + AT_rich Low_complexity Low_complexity 1 39 0 3 716 187 93 47 0 chr3L 17222093 17222136 -7321421 + (TATAA)n Simple_repeat Simple_repeat 4 48 0 3 716 213 167 0 0 chr3L 17222429 17222483 -7321074 + (TG)n Simple_repeat Simple_repeat 1 54 0 3 716 26 0 0 0 chr3L 17224211 17224237 -7319320 + AT_rich Low_complexity Low_complexity 1 26 0 3 716 244 238 0 24 chr3L 17225696 17225778 -7317779 + T-rich Low_complexity Low_complexity 1 80 0 3 716 22 0 0 0 chr3L 17227199 17227221 -7316336 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 210 239 13 53 chr3L 17228537 17228612 -7314945 + (TTGGGG)n Simple_repeat Simple_repeat 2 73 0 3 716 203 259 0 0 chr3L 17230158 17230212 -7313345 + (CA)n Simple_repeat Simple_repeat 1 54 0 3 716 204 158 0 0 chr3L 17231396 17231434 -7312123 + (CTG)n Simple_repeat Simple_repeat 3 40 0 3 716 27 49 0 0 chr3L 17235304 17235345 -7308212 + AT_rich Low_complexity Low_complexity 1 41 0 3 716 2867 134 11 27 chr3L 17235636 17236159 -7307398 + FB4_DM DNA Tc1 1125 1639 -2450 3 716 509 145 24 0 chr3L 17236161 17236244 -7307313 + FB4_DM DNA Tc1 2363 2447 -1642 3 716 229 69 0 0 chr3L 17236247 17236276 -7307281 - FB4_DM DNA Tc1 -2951 1138 1110 3 716 2203 132 48 3 chr3L 17238141 17238520 -7305037 - FB4_DM DNA Tc1 -1331 2758 2363 3 716 1642 106 70 20 chr3L 17238521 17238702 -7304855 - FB4_DM DNA Tc1 -2449 1640 1454 3 716 180 0 0 0 chr3L 17238702 17238722 -7304835 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 3 716 1642 106 70 20 chr3L 17238722 17238838 -7304719 - FB4_DM DNA Tc1 -2636 1453 1328 3 716 482 196 100 14 chr3L 17239362 17239502 -7304055 - DNAREP1_DM LINE Penelope -17 577 426 3 716 27 0 0 0 chr3L 17239511 17239538 -7304019 + AT_rich Low_complexity Low_complexity 1 27 0 3 716 25 0 0 0 chr3L 17239890 17239915 -7303642 + AT_rich Low_complexity Low_complexity 1 25 0 3 716 219 241 0 0 chr3L 17241037 17241095 -7302462 + (TG)n Simple_repeat Simple_repeat 1 58 0 3 716 264 30 0 0 chr3L 17242380 17242413 -7301144 + (CACCG)n Simple_repeat Simple_repeat 2 34 0 3 716 226 152 22 0 chr3L 17242497 17242543 -7301014 + (CGGGG)n Simple_repeat Simple_repeat 3 49 0 3 716 220 164 36 0 chr3L 17243607 17243662 -7299895 + (CA)n Simple_repeat Simple_repeat 2 58 0 3 716 25 51 0 0 chr3L 17243936 17243975 -7299582 + AT_rich Low_complexity Low_complexity 1 39 0 3 716 26 30 0 0 chr3L 17244148 17244181 -7299376 + AT_rich Low_complexity Low_complexity 1 33 0 3 716 201 94 0 0 chr3L 17244498 17244530 -7299027 + (T)n Simple_repeat Simple_repeat 1 32 0 3 716 215 260 0 0 chr3L 17244741 17244791 -7298766 + A-rich Low_complexity Low_complexity 1 50 0 3 716 261 234 109 120 chr3L 17245288 17245463 -7298094 - DNAREP1_DM LINE Penelope -119 475 303 3 716 266 293 0 0 chr3L 17245932 17246056 -7297501 + (CTG)n Simple_repeat Simple_repeat 1 124 0 3 716 27 29 0 0 chr3L 17247154 17247188 -7296369 + AT_rich Low_complexity Low_complexity 1 34 0 3 716 192 97 0 0 chr3L 17248154 17248185 -7295372 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 716 41 48 0 0 chr3L 17248471 17248533 -7295024 + AT_rich Low_complexity Low_complexity 1 62 0 3 716 228 122 0 0 chr3L 17249891 17249932 -7293625 + (CGAAT)n Simple_repeat Simple_repeat 4 44 0 3 716 38 39 0 0 chr3L 17251332 17251384 -7292173 + AT_rich Low_complexity Low_complexity 1 52 0 3 716 25 31 0 0 chr3L 17255564 17255596 -7287961 + AT_rich Low_complexity Low_complexity 1 32 0 3 716 21 36 0 0 chr3L 17256823 17256851 -7286706 + AT_rich Low_complexity Low_complexity 1 28 0 3 716 34 72 0 0 chr3L 17256865 17256934 -7286623 + AT_rich Low_complexity Low_complexity 1 69 0 3 716 234 62 0 0 chr3L 17258140 17258172 -7285385 + (T)n Simple_repeat Simple_repeat 1 32 0 3 716 258 105 0 0 chr3L 17258367 17258405 -7285152 + (TATG)n Simple_repeat Simple_repeat 2 39 0 3 716 207 189 0 0 chr3L 17258449 17258486 -7285071 + (TTTCG)n Simple_repeat Simple_repeat 4 40 0 3 716 234 193 0 0 chr3L 17260475 17260532 -7283025 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 716 216 111 0 0 chr3L 17261582 17261618 -7281939 + (CA)n Simple_repeat Simple_repeat 2 37 0 3 716 222 222 0 0 chr3L 17262974 17263028 -7280529 + A-rich Low_complexity Low_complexity 1 54 0 3 716 252 100 0 0 chr3L 17263201 17263241 -7280316 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 716 22 80 0 0 chr3L 17264247 17264297 -7279260 + AT_rich Low_complexity Low_complexity 1 50 0 3 716 183 114 0 0 chr3L 17266875 17266910 -7276647 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 716 207 125 0 0 chr3L 17267781 17267821 -7275736 + (A)n Simple_repeat Simple_repeat 1 40 0 3 716 229 241 0 17 chr3L 17268420 17268479 -7275078 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 3 716 243 152 0 0 chr3L 17270733 17270779 -7272778 + (GAGTG)n Simple_repeat Simple_repeat 3 48 0 3 716 252 200 0 0 chr3L 17270857 17270912 -7272645 + (CAGCT)n Simple_repeat Simple_repeat 4 58 0 3 716 189 0 0 0 chr3L 17271018 17271039 -7272518 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 716 36 23 0 0 chr3L 17271421 17271464 -7272093 + AT_rich Low_complexity Low_complexity 1 43 0 3 716 354 91 0 0 chr3L 17273622 17273677 -7269880 + (ACTG)n Simple_repeat Simple_repeat 1 55 0 3 716 22 56 0 0 chr3L 17279454 17279490 -7264067 + AT_rich Low_complexity Low_complexity 1 36 0 3 716 270 136 0 0 chr3L 17280906 17280950 -7262607 + (ATGGTG)n Simple_repeat Simple_repeat 4 47 0 3 716 237 108 0 0 chr3L 17281110 17281147 -7262410 + (A)n Simple_repeat Simple_repeat 1 37 0 3 716 209 176 0 0 chr3L 17282057 17282091 -7261466 + (AGCTG)n Simple_repeat Simple_repeat 3 36 0 3 716 192 200 0 0 chr3L 17282526 17282576 -7260981 + (TGGA)n Simple_repeat Simple_repeat 2 51 0 3 716 239 114 0 22 chr3L 17283162 17283207 -7260350 + (TTTCC)n Simple_repeat Simple_repeat 2 45 0 3 716 210 37 0 0 chr3L 17284137 17284164 -7259393 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 716 22 0 0 0 chr3L 17286420 17286442 -7257115 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 223 320 0 10 chr3L 17289264 17289365 -7254192 + (CTG)n Simple_repeat Simple_repeat 1 100 0 3 716 22 0 0 0 chr3L 17289570 17289592 -7253965 + AT_rich Low_complexity Low_complexity 1 22 0 3 716 267 31 0 0 chr3L 17290648 17290680 -7252877 + (CAGT)n Simple_repeat Simple_repeat 3 34 0 3 716 216 67 0 0 chr3L 17291616 17291646 -7251911 + (CATCT)n Simple_repeat Simple_repeat 1 30 0 3 716 201 39 0 0 chr3L 17292036 17292062 -7251495 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 716 211 211 0 0 chr3L 17294142 17294180 -7249377 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 716 291 54 0 0 chr3L 17294614 17294651 -7248906 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 716 300 70 0 0 chr3L 17297146 17297189 -7246368 + (CA)n Simple_repeat Simple_repeat 2 44 0 3 717 27 73 0 0 chr3L 17301888 17301943 -7241614 + AT_rich Low_complexity Low_complexity 1 55 0 3 717 22 0 0 0 chr3L 17303316 17303338 -7240219 + AT_rich Low_complexity Low_complexity 1 22 0 3 717 39 22 0 0 chr3L 17303816 17303862 -7239695 + AT_rich Low_complexity Low_complexity 1 46 0 3 717 24 0 0 0 chr3L 17306506 17306530 -7237027 + AT_rich Low_complexity Low_complexity 1 24 0 3 717 189 254 0 0 chr3L 17307730 17307785 -7235772 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 3 717 185 154 26 0 chr3L 17307835 17307874 -7235683 + (CACCAT)n Simple_repeat Simple_repeat 4 43 0 3 717 23 0 0 0 chr3L 17312737 17312760 -7230797 + AT_rich Low_complexity Low_complexity 1 23 0 3 717 315 181 0 0 chr3L 17316693 17316765 -7226792 + GA-rich Low_complexity Low_complexity 2 73 0 3 717 27 49 0 0 chr3L 17319974 17320015 -7223542 + AT_rich Low_complexity Low_complexity 1 41 0 3 717 31 0 0 60 chr3L 17328727 17328777 -7214780 + AT_rich Low_complexity Low_complexity 1 47 0 3 717 288 0 0 0 chr3L 17329610 17329642 -7213915 + (CA)n Simple_repeat Simple_repeat 1 32 0 3 717 24 77 0 0 chr3L 17332525 17332577 -7210980 + AT_rich Low_complexity Low_complexity 1 52 0 3 717 29 70 0 0 chr3L 17332804 17332861 -7210696 + AT_rich Low_complexity Low_complexity 1 57 0 3 717 44 35 0 0 chr3L 17332924 17332982 -7210575 + AT_rich Low_complexity Low_complexity 1 58 0 3 717 38 0 0 0 chr3L 17333233 17333271 -7210286 + AT_rich Low_complexity Low_complexity 1 38 0 3 717 21 36 0 0 chr3L 17333314 17333342 -7210215 + AT_rich Low_complexity Low_complexity 1 28 0 3 717 21 0 0 0 chr3L 17335043 17335064 -7208493 + AT_rich Low_complexity Low_complexity 1 21 0 3 717 24 0 0 0 chr3L 17336667 17336691 -7206866 + AT_rich Low_complexity Low_complexity 1 24 0 3 717 200 184 0 0 chr3L 17338755 17338793 -7204764 + (CTG)n Simple_repeat Simple_repeat 1 38 0 3 717 33 25 0 0 chr3L 17339166 17339206 -7204351 + AT_rich Low_complexity Low_complexity 1 40 0 3 717 24 0 0 0 chr3L 17342136 17342160 -7201397 + AT_rich Low_complexity Low_complexity 1 24 0 3 717 225 0 0 0 chr3L 17342857 17342882 -7200675 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 717 201 94 0 0 chr3L 17343033 17343065 -7200492 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 717 226 38 75 19 chr3L 17343539 17343592 -7199965 + (TG)n Simple_repeat Simple_repeat 2 57 0 3 717 24 0 0 0 chr3L 17345866 17345890 -7197667 + AT_rich Low_complexity Low_complexity 1 24 0 3 717 342 100 0 0 chr3L 17351180 17351240 -7192317 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 717 31 68 0 0 chr3L 17352199 17352258 -7191299 + AT_rich Low_complexity Low_complexity 1 59 0 3 717 21 0 0 0 chr3L 17361108 17361129 -7182428 + AT_rich Low_complexity Low_complexity 1 21 0 3 717 26 74 0 0 chr3L 17367313 17367367 -7176190 + AT_rich Low_complexity Low_complexity 1 54 0 3 717 242 220 0 0 chr3L 17370026 17370085 -7173472 + A-rich Low_complexity Low_complexity 1 59 0 3 717 24 0 0 0 chr3L 17371341 17371365 -7172192 + AT_rich Low_complexity Low_complexity 1 24 0 3 717 22 0 0 0 chr3L 17373143 17373165 -7170392 + AT_rich Low_complexity Low_complexity 1 22 0 3 717 195 188 0 0 chr3L 17373609 17373657 -7169900 + (CTG)n Simple_repeat Simple_repeat 3 50 0 3 717 231 235 0 29 chr3L 17374270 17374340 -7169217 - Gypsy11_I LTR Gypsy -2937 587 520 3 717 303 154 39 0 chr3L 17374303 17374381 -7169176 - ROO_I LTR Pao -7534 722 642 3 717 280 238 0 0 chr3L 17375175 17375255 -7168302 - ROO_I LTR Pao -7527 729 650 3 717 213 315 14 20 chr3L 17377322 17377468 -7166089 + (TGGG)n Simple_repeat Simple_repeat 2 146 0 3 717 195 189 0 0 chr3L 17377556 17377609 -7165948 + (TGGG)n Simple_repeat Simple_repeat 2 54 0 3 717 221 287 9 27 chr3L 17377646 17377757 -7165800 + (TGGG)n Simple_repeat Simple_repeat 2 110 0 3 717 195 189 0 0 chr3L 17377865 17377918 -7165639 + (TGGG)n Simple_repeat Simple_repeat 2 54 0 3 717 253 299 11 53 chr3L 17378200 17378387 -7165170 + (TGGG)n Simple_repeat Simple_repeat 1 179 0 3 717 195 189 0 0 chr3L 17378498 17378551 -7165006 + (TGGG)n Simple_repeat Simple_repeat 2 54 0 3 717 210 308 8 25 chr3L 17378588 17378708 -7164849 + (TGGG)n Simple_repeat Simple_repeat 1 118 0 3 717 208 264 5 68 chr3L 17378805 17378996 -7164561 + (TGG)n Simple_repeat Simple_repeat 2 180 0 3 717 205 299 11 0 chr3L 17379257 17379344 -7164213 + (TGGG)n Simple_repeat Simple_repeat 2 89 0 3 717 43 20 0 0 chr3L 17386608 17386658 -7156899 + AT_rich Low_complexity Low_complexity 1 50 0 3 717 35 24 0 0 chr3L 17386838 17386880 -7156677 + AT_rich Low_complexity Low_complexity 1 42 0 3 717 261 146 0 0 chr3L 17387771 17387819 -7155738 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 717 25 0 0 0 chr3L 17388362 17388387 -7155170 + AT_rich Low_complexity Low_complexity 1 25 0 3 717 24 53 0 0 chr3L 17396019 17396057 -7147500 + AT_rich Low_complexity Low_complexity 1 38 0 3 717 235 193 17 17 chr3L 17396493 17396551 -7147006 + (CATAT)n Simple_repeat Simple_repeat 1 58 0 3 717 21 0 0 0 chr3L 17398377 17398398 -7145159 + AT_rich Low_complexity Low_complexity 1 21 0 3 717 21 36 0 0 chr3L 17400250 17400278 -7143279 + AT_rich Low_complexity Low_complexity 1 28 0 3 717 206 211 0 0 chr3L 17400894 17400932 -7142625 + (TCCGG)n Simple_repeat Simple_repeat 5 42 0 3 717 22 80 0 0 chr3L 17403200 17403250 -7140307 + AT_rich Low_complexity Low_complexity 1 50 0 3 717 38 61 0 0 chr3L 17404952 17405018 -7138539 + AT_rich Low_complexity Low_complexity 1 66 0 3 717 22 0 0 0 chr3L 17410332 17410354 -7133203 + AT_rich Low_complexity Low_complexity 1 22 0 3 717 198 0 0 0 chr3L 17414682 17414704 -7128853 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 717 21 0 0 0 chr3L 17420567 17420588 -7122969 + AT_rich Low_complexity Low_complexity 1 21 0 3 717 22 35 0 0 chr3L 17422004 17422033 -7121524 + AT_rich Low_complexity Low_complexity 1 29 0 3 717 233 119 24 0 chr3L 17423509 17423551 -7120006 + (CAT)n Simple_repeat Simple_repeat 1 43 0 3 717 21 0 0 0 chr3L 17431177 17431198 -7112359 + AT_rich Low_complexity Low_complexity 1 21 0 3 717 21 82 0 0 chr3L 17431271 17431320 -7112237 + AT_rich Low_complexity Low_complexity 1 49 0 3 718 22 35 0 0 chr3L 17432876 17432905 -7110652 + AT_rich Low_complexity Low_complexity 1 29 0 3 718 24 32 0 0 chr3L 17433606 17433637 -7109920 + AT_rich Low_complexity Low_complexity 1 31 0 3 718 196 91 45 0 chr3L 17434863 17434907 -7108650 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 718 227 172 46 15 chr3L 17435111 17435176 -7108381 + (CACCC)n Simple_repeat Simple_repeat 4 70 0 3 718 345 109 0 0 chr3L 17437116 17437171 -7106386 + (TA)n Simple_repeat Simple_repeat 1 55 0 3 718 261 83 0 0 chr3L 17439467 17439503 -7104054 + (TG)n Simple_repeat Simple_repeat 1 36 0 3 718 27 0 0 0 chr3L 17439698 17439725 -7103832 + AT_rich Low_complexity Low_complexity 1 27 0 3 718 26 82 0 0 chr3L 17440067 17440128 -7103429 + AT_rich Low_complexity Low_complexity 1 61 0 3 718 201 204 0 20 chr3L 17440579 17440629 -7102928 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 718 207 188 0 0 chr3L 17441907 17441955 -7101602 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 718 228 318 0 18 chr3L 17442599 17442711 -7100846 + (CAG)n Simple_repeat Simple_repeat 2 111 0 3 718 223 292 0 0 chr3L 17443735 17443800 -7099757 + (CAA)n Simple_repeat Simple_repeat 1 65 0 3 718 234 0 0 0 chr3L 17447337 17447363 -7096194 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 718 28 29 0 0 chr3L 17447796 17447831 -7095726 + AT_rich Low_complexity Low_complexity 1 35 0 3 718 21 36 0 0 chr3L 17447880 17447908 -7095649 + AT_rich Low_complexity Low_complexity 1 28 0 3 718 205 179 0 0 chr3L 17448724 17448763 -7094794 + T-rich Low_complexity Low_complexity 1 39 0 3 718 27 0 0 0 chr3L 17450222 17450249 -7093308 + AT_rich Low_complexity Low_complexity 1 27 0 3 718 234 136 0 0 chr3L 17450297 17450341 -7093216 + (TA)n Simple_repeat Simple_repeat 2 45 0 3 718 27 73 0 0 chr3L 17450542 17450597 -7092960 + AT_rich Low_complexity Low_complexity 1 55 0 3 718 32 0 0 0 chr3L 17451023 17451055 -7092502 + AT_rich Low_complexity Low_complexity 1 32 0 3 718 22 0 0 0 chr3L 17452081 17452103 -7091454 + AT_rich Low_complexity Low_complexity 1 22 0 3 718 183 42 0 0 chr3L 17453572 17453596 -7089961 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 718 240 184 0 0 chr3L 17453601 17453650 -7089907 + (TA)n Simple_repeat Simple_repeat 1 49 0 3 718 306 50 0 0 chr3L 17455780 17455820 -7087737 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 718 22 35 0 0 chr3L 17458435 17458464 -7085093 + AT_rich Low_complexity Low_complexity 1 29 0 3 718 28 29 0 0 chr3L 17458714 17458749 -7084808 + AT_rich Low_complexity Low_complexity 1 35 0 3 718 27 62 0 0 chr3L 17458911 17458959 -7084598 + AT_rich Low_complexity Low_complexity 1 48 0 3 718 22 35 0 0 chr3L 17459938 17459967 -7083590 + AT_rich Low_complexity Low_complexity 1 29 0 3 718 23 0 0 0 chr3L 17461737 17461760 -7081797 + AT_rich Low_complexity Low_complexity 1 23 0 3 718 231 298 0 0 chr3L 17463405 17463462 -7080095 + (CGG)n Simple_repeat Simple_repeat 1 57 0 3 718 26 50 0 0 chr3L 17469190 17469230 -7074327 + AT_rich Low_complexity Low_complexity 1 40 0 3 718 53 30 0 0 chr3L 17475232 17475299 -7068258 + AT_rich Low_complexity Low_complexity 1 67 0 3 718 34 0 0 0 chr3L 17475607 17475641 -7067916 + AT_rich Low_complexity Low_complexity 1 34 0 3 718 21 82 0 0 chr3L 17475724 17475773 -7067784 + AT_rich Low_complexity Low_complexity 1 49 0 3 718 26 30 0 0 chr3L 17475824 17475857 -7067700 + AT_rich Low_complexity Low_complexity 1 33 0 3 718 25 0 0 0 chr3L 17475889 17475914 -7067643 + AT_rich Low_complexity Low_complexity 1 25 0 3 718 208 178 22 0 chr3L 17480288 17480333 -7063224 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 718 192 40 0 0 chr3L 17480412 17480437 -7063120 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3 718 25 0 0 0 chr3L 17480955 17480980 -7062577 + AT_rich Low_complexity Low_complexity 1 25 0 3 718 205 155 68 17 chr3L 17483546 17483605 -7059952 + A-rich Low_complexity Low_complexity 3 64 0 3 718 189 0 0 0 chr3L 17485143 17485164 -7058393 + (CAACG)n Simple_repeat Simple_repeat 2 22 0 3 718 225 65 0 0 chr3L 17486768 17486799 -7056758 + (CGAG)n Simple_repeat Simple_repeat 4 34 0 3 718 226 159 23 0 chr3L 17486992 17487036 -7056521 + OSVALDO_LTR LTR Gypsy 47 91 -1105 3 718 236 268 0 0 chr3L 17489083 17489139 -7054418 + (TATG)n Simple_repeat Simple_repeat 1 56 0 3 718 186 133 0 0 chr3L 17489549 17489579 -7053978 + (CTG)n Simple_repeat Simple_repeat 3 32 0 3 718 36 0 0 0 chr3L 17490809 17490845 -7052712 + AT_rich Low_complexity Low_complexity 1 36 0 3 718 264 130 0 0 chr3L 17493857 17493903 -7049654 + (CA)n Simple_repeat Simple_repeat 1 46 0 3 718 228 185 0 18 chr3L 17496223 17496278 -7047279 + T-rich Low_complexity Low_complexity 5 58 0 3 718 22 35 0 0 chr3L 17496625 17496654 -7046903 + AT_rich Low_complexity Low_complexity 1 29 0 3 718 251 167 0 0 chr3L 17497381 17497435 -7046122 - ROO_I LTR Pao -7542 714 661 3 718 27 0 0 0 chr3L 17506904 17506931 -7036626 + AT_rich Low_complexity Low_complexity 1 27 0 3 718 21 0 0 0 chr3L 17507177 17507198 -7036359 + AT_rich Low_complexity Low_complexity 1 21 0 3 718 279 71 0 0 chr3L 17509556 17509598 -7033959 + (ATTTG)n Simple_repeat Simple_repeat 1 42 0 3 718 61915 2 1 9 chr3L 17510134 17517635 -7025922 - DM412 LTR Gypsy 0 6897 1 3 718 290 254 8 26 chr3L 17519941 17520058 -7023499 + (TTG)n Simple_repeat Simple_repeat 2 116 0 3 718 25 0 0 0 chr3L 17520548 17520573 -7022984 + AT_rich Low_complexity Low_complexity 1 25 0 3 718 244 248 30 0 chr3L 17522163 17522264 -7021293 - ROO_I LTR Pao -7511 745 642 3 718 29 28 0 0 chr3L 17523008 17523044 -7020513 + AT_rich Low_complexity Low_complexity 1 36 0 3 718 21 36 0 0 chr3L 17526425 17526453 -7017104 + AT_rich Low_complexity Low_complexity 1 28 0 3 718 21 0 0 0 chr3L 17534352 17534373 -7009184 + AT_rich Low_complexity Low_complexity 1 21 0 3 718 21 0 0 0 chr3L 17534588 17534609 -7008948 + AT_rich Low_complexity Low_complexity 1 21 0 3 718 207 139 0 0 chr3L 17535864 17535900 -7007657 + (CAG)n Simple_repeat Simple_repeat 1 36 0 3 718 31 26 0 0 chr3L 17537313 17537351 -7006206 + AT_rich Low_complexity Low_complexity 1 38 0 3 718 25 0 0 0 chr3L 17539105 17539130 -7004427 + AT_rich Low_complexity Low_complexity 1 25 0 3 718 27 29 0 0 chr3L 17539312 17539346 -7004211 + AT_rich Low_complexity Low_complexity 1 34 0 3 718 21 0 0 0 chr3L 17540543 17540564 -7002993 + AT_rich Low_complexity Low_complexity 1 21 0 3 718 21 0 0 0 chr3L 17543912 17543933 -6999624 + AT_rich Low_complexity Low_complexity 1 21 0 3 718 24 77 0 0 chr3L 17543960 17544012 -6999545 + AT_rich Low_complexity Low_complexity 1 52 0 3 718 189 100 19 39 chr3L 17544895 17544947 -6998610 + T-rich Low_complexity Low_complexity 5 55 0 3 718 21 0 0 0 chr3L 17544969 17544990 -6998567 + AT_rich Low_complexity Low_complexity 1 21 0 3 718 21 36 0 0 chr3L 17545628 17545656 -6997901 + AT_rich Low_complexity Low_complexity 1 28 0 3 718 329 269 0 28 chr3L 17546480 17546587 -6996970 + CT-rich Low_complexity Low_complexity 2 105 0 3 718 22 70 0 0 chr3L 17551796 17551839 -6991718 + AT_rich Low_complexity Low_complexity 1 43 0 3 718 25 0 0 0 chr3L 17552069 17552094 -6991463 + AT_rich Low_complexity Low_complexity 1 25 0 3 718 38 22 0 0 chr3L 17553258 17553303 -6990254 + AT_rich Low_complexity Low_complexity 1 45 0 3 718 413 89 0 15 chr3L 17554399 17554467 -6989090 + (TAA)n Simple_repeat Simple_repeat 2 68 0 3 718 276 111 0 0 chr3L 17554593 17554638 -6988919 + (TA)n Simple_repeat Simple_repeat 1 45 0 3 718 213 176 19 47 chr3L 17555329 17555436 -6988121 + (CTG)n Simple_repeat Simple_repeat 3 106 0 3 718 234 128 0 0 chr3L 17555536 17555575 -6987982 + (CTG)n Simple_repeat Simple_repeat 3 41 0 3 718 269 189 11 43 chr3L 17555595 17555689 -6987868 - ROO_I LTR Pao -7532 724 634 3 718 198 71 0 0 chr3L 17556883 17556911 -6986646 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 718 214 250 0 0 chr3L 17556983 17557023 -6986534 + (CTG)n Simple_repeat Simple_repeat 1 40 0 3 718 264 130 0 0 chr3L 17557797 17557843 -6985714 + (CCG)n Simple_repeat Simple_repeat 1 46 0 3 718 195 100 0 0 chr3L 17558619 17558649 -6984908 + (CTG)n Simple_repeat Simple_repeat 1 30 0 3 718 285 140 0 0 chr3L 17558725 17558782 -6984775 + (CTG)n Simple_repeat Simple_repeat 3 59 0 3 718 203 204 20 0 chr3L 17559428 17559477 -6984080 + (AAATG)n Simple_repeat Simple_repeat 1 50 0 3 718 210 118 0 0 chr3L 17559686 17559720 -6983837 + (CA)n Simple_repeat Simple_repeat 2 35 0 3 718 218 220 17 0 chr3L 17559789 17559848 -6983709 + (CA)n Simple_repeat Simple_repeat 1 60 0 3 718 24 0 0 0 chr3L 17560179 17560203 -6983354 + AT_rich Low_complexity Low_complexity 1 24 0 3 718 200 291 15 45 chr3L 17561478 17561611 -6981946 + A-rich Low_complexity Low_complexity 4 132 0 3 718 207 114 0 0 chr3L 17562044 17562079 -6981478 + (CAG)n Simple_repeat Simple_repeat 1 35 0 3 718 26 64 0 0 chr3L 17562794 17562841 -6980716 + AT_rich Low_complexity Low_complexity 1 47 0 3 718 23 0 0 0 chr3L 17562996 17563019 -6980538 + AT_rich Low_complexity Low_complexity 1 23 0 3 718 239 288 0 27 chr3L 17563147 17563222 -6980335 + CT-rich Low_complexity Low_complexity 4 76 0 3 719 216 0 0 0 chr3L 17565210 17565234 -6978323 + (TG)n Simple_repeat Simple_repeat 1 24 0 3 719 208 182 0 22 chr3L 17565395 17565440 -6978117 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 719 23 0 0 0 chr3L 17566105 17566128 -6977429 + AT_rich Low_complexity Low_complexity 1 23 0 3 719 27 29 0 0 chr3L 17567619 17567653 -6975904 + AT_rich Low_complexity Low_complexity 1 34 0 3 719 201 121 0 0 chr3L 17569092 17569125 -6974432 + (TTTG)n Simple_repeat Simple_repeat 3 35 0 3 719 229 277 0 0 chr3L 17571231 17571296 -6972261 + GA-rich Low_complexity Low_complexity 3 67 0 3 719 21 57 0 0 chr3L 17571571 17571606 -6971951 + AT_rich Low_complexity Low_complexity 1 35 0 3 719 214 276 0 26 chr3L 17572864 17572942 -6970615 + (ACTG)n Simple_repeat Simple_repeat 1 76 0 3 719 29 28 0 0 chr3L 17575771 17575807 -6967750 + AT_rich Low_complexity Low_complexity 1 36 0 3 719 209 222 0 0 chr3L 17576379 17576424 -6967133 + (GATTG)n Simple_repeat Simple_repeat 3 47 0 3 719 213 154 0 0 chr3L 17576554 17576593 -6966964 + CT-rich Low_complexity Low_complexity 3 41 0 3 719 260 260 10 29 chr3L 17577724 17577827 -6965730 + T-rich Low_complexity Low_complexity 5 105 0 3 719 213 140 0 23 chr3L 17578015 17578059 -6965498 + G-rich Low_complexity Low_complexity 5 47 0 3 719 26 0 0 0 chr3L 17578253 17578279 -6965278 + AT_rich Low_complexity Low_complexity 1 26 0 3 719 258 311 0 0 chr3L 17579618 17579708 -6963849 + (CAA)n Simple_repeat Simple_repeat 1 90 0 3 719 21 0 0 0 chr3L 17579982 17580003 -6963554 + AT_rich Low_complexity Low_complexity 1 21 0 3 719 255 31 0 0 chr3L 17581660 17581692 -6961865 + (TA)n Simple_repeat Simple_repeat 1 32 0 3 719 190 116 23 23 chr3L 17583648 17583692 -6959865 + (CAGAG)n Simple_repeat Simple_repeat 3 46 0 3 719 301 253 11 11 chr3L 17583731 17583819 -6959738 + (TG)n Simple_repeat Simple_repeat 1 88 0 3 719 204 97 0 0 chr3L 17584177 17584208 -6959349 + (CTG)n Simple_repeat Simple_repeat 2 32 0 3 719 207 161 0 0 chr3L 17585700 17585731 -6957826 + (CAG)n Simple_repeat Simple_repeat 1 31 0 3 719 189 107 0 0 chr3L 17586493 17586521 -6957036 + (TTCGG)n Simple_repeat Simple_repeat 2 29 0 3 719 364 216 8 23 chr3L 17586565 17586693 -6956864 + (TTG)n Simple_repeat Simple_repeat 2 127 0 3 719 28 61 0 0 chr3L 17588542 17588591 -6954966 + AT_rich Low_complexity Low_complexity 1 49 0 3 719 246 237 0 0 chr3L 17588837 17588896 -6954661 + (CA)n Simple_repeat Simple_repeat 1 59 0 3 719 187 79 26 26 chr3L 17589320 17589359 -6954198 + (GTGTG)n Simple_repeat Simple_repeat 1 39 0 3 719 315 71 0 0 chr3L 17590774 17590816 -6952741 + (TTG)n Simple_repeat Simple_repeat 1 42 0 3 719 31 58 0 0 chr3L 17591573 17591625 -6951932 + AT_rich Low_complexity Low_complexity 1 52 0 3 719 30 0 0 0 chr3L 17592487 17592517 -6951040 + AT_rich Low_complexity Low_complexity 1 30 0 3 719 186 143 0 0 chr3L 17592912 17592947 -6950610 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 719 225 182 0 0 chr3L 17593429 17593484 -6950073 + (CAA)n Simple_repeat Simple_repeat 1 55 0 3 719 180 0 0 0 chr3L 17593633 17593653 -6949904 + (CAA)n Simple_repeat Simple_repeat 1 20 0 3 719 25 0 0 0 chr3L 17593849 17593874 -6949683 + AT_rich Low_complexity Low_complexity 1 25 0 3 719 219 114 0 0 chr3L 17594687 17594722 -6948835 + (TTG)n Simple_repeat Simple_repeat 1 35 0 3 719 183 129 0 0 chr3L 17595546 17595577 -6947980 + (TAA)n Simple_repeat Simple_repeat 1 31 0 3 719 22 56 0 0 chr3L 17596809 17596845 -6946712 + AT_rich Low_complexity Low_complexity 1 36 0 3 719 23 0 0 0 chr3L 17597244 17597267 -6946290 + AT_rich Low_complexity Low_complexity 1 23 0 3 719 249 33 0 0 chr3L 17599998 17600028 -6943529 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 719 26 30 0 0 chr3L 17600580 17600613 -6942944 + AT_rich Low_complexity Low_complexity 1 33 0 3 719 231 222 10 72 chr3L 17601104 17601201 -6942356 + A-rich Low_complexity Low_complexity 1 91 0 3 719 215 200 0 0 chr3L 17601394 17601434 -6942123 + (CGG)n Simple_repeat Simple_repeat 2 41 0 3 719 188 149 0 21 chr3L 17602012 17602060 -6941497 + (TGAG)n Simple_repeat Simple_repeat 2 48 0 3 719 25 31 0 0 chr3L 17602573 17602605 -6940952 + AT_rich Low_complexity Low_complexity 1 32 0 3 719 28 0 0 0 chr3L 17603691 17603719 -6939838 + AT_rich Low_complexity Low_complexity 1 28 0 3 719 267 276 0 0 chr3L 17603974 17604050 -6939507 + A-rich Low_complexity Low_complexity 2 77 0 3 719 260 246 16 0 chr3L 17604281 17604342 -6939215 + (CGG)n Simple_repeat Simple_repeat 1 62 0 3 719 22 80 0 0 chr3L 17604591 17604641 -6938916 + AT_rich Low_complexity Low_complexity 1 50 0 3 719 349 248 24 16 chr3L 17604830 17604953 -6938604 + (CAG)n Simple_repeat Simple_repeat 2 125 0 3 719 183 42 0 0 chr3L 17606422 17606446 -6937111 + (T)n Simple_repeat Simple_repeat 1 24 0 3 719 33 97 0 0 chr3L 17606671 17606774 -6936783 + AT_rich Low_complexity Low_complexity 1 103 0 3 719 248 50 0 70 chr3L 17607027 17607070 -6936487 + (TTG)n Simple_repeat Simple_repeat 1 40 0 3 719 249 98 0 0 chr3L 17607335 17607376 -6936181 + (CAACT)n Simple_repeat Simple_repeat 5 45 0 3 719 23 0 0 0 chr3L 17607940 17607963 -6935594 + AT_rich Low_complexity Low_complexity 1 23 0 3 719 24 0 0 0 chr3L 17608017 17608041 -6935516 + AT_rich Low_complexity Low_complexity 1 24 0 3 719 21 71 0 0 chr3L 17608104 17608146 -6935411 + AT_rich Low_complexity Low_complexity 1 42 0 3 719 241 282 0 12 chr3L 17610051 17610137 -6933420 + (TG)n Simple_repeat Simple_repeat 2 86 0 3 719 22 0 0 0 chr3L 17611288 17611310 -6932247 + AT_rich Low_complexity Low_complexity 1 22 0 3 719 26 0 0 0 chr3L 17613098 17613124 -6930433 + AT_rich Low_complexity Low_complexity 1 26 0 3 719 26 30 0 0 chr3L 17624330 17624363 -6919194 + AT_rich Low_complexity Low_complexity 1 33 0 3 719 29 0 0 0 chr3L 17627790 17627819 -6915738 + AT_rich Low_complexity Low_complexity 1 29 0 3 719 24 0 0 0 chr3L 17628644 17628668 -6914889 + AT_rich Low_complexity Low_complexity 1 24 0 3 719 24 67 0 0 chr3L 17628980 17629025 -6914532 + AT_rich Low_complexity Low_complexity 1 45 0 3 719 21 0 0 0 chr3L 17630488 17630509 -6913048 + AT_rich Low_complexity Low_complexity 1 21 0 3 719 21 57 0 0 chr3L 17633644 17633679 -6909878 + AT_rich Low_complexity Low_complexity 1 35 0 3 719 22 0 0 0 chr3L 17633732 17633754 -6909803 + AT_rich Low_complexity Low_complexity 1 22 0 3 719 300 53 0 0 chr3L 17634988 17635026 -6908531 + (CAAT)n Simple_repeat Simple_repeat 1 38 0 3 719 216 156 22 22 chr3L 17635100 17635146 -6908411 + (TG)n Simple_repeat Simple_repeat 2 47 0 3 719 335 192 0 13 chr3L 17635262 17635341 -6908216 + (CAA)n Simple_repeat Simple_repeat 1 78 0 3 719 23 0 0 0 chr3L 17636988 17637011 -6906546 + AT_rich Low_complexity Low_complexity 1 23 0 3 719 30 59 0 0 chr3L 17640043 17640094 -6903463 + AT_rich Low_complexity Low_complexity 1 51 0 3 719 21 0 0 0 chr3L 17642696 17642717 -6900840 + AT_rich Low_complexity Low_complexity 1 21 0 3 719 23 33 0 0 chr3L 17646063 17646093 -6897464 + AT_rich Low_complexity Low_complexity 1 30 0 3 719 246 32 0 0 chr3L 17652295 17652326 -6891231 + (TC)n Simple_repeat Simple_repeat 2 32 0 3 719 22 35 0 0 chr3L 17653038 17653067 -6890490 + AT_rich Low_complexity Low_complexity 1 29 0 3 719 22 35 0 0 chr3L 17653093 17653122 -6890435 + AT_rich Low_complexity Low_complexity 1 29 0 3 719 180 0 0 0 chr3L 17653850 17653870 -6889687 + (T)n Simple_repeat Simple_repeat 1 20 0 3 719 215 208 0 0 chr3L 17655544 17655592 -6887965 + (CTG)n Simple_repeat Simple_repeat 1 48 0 3 719 264 178 0 0 chr3L 17655721 17655794 -6887763 - ROO_I LTR Pao -7523 733 661 3 719 245 150 0 48 chr3L 17656297 17656360 -6887197 + (CTG)n Simple_repeat Simple_repeat 1 60 0 3 719 186 103 0 0 chr3L 17656569 17656598 -6886959 + (CTG)n Simple_repeat Simple_repeat 3 31 0 3 719 219 203 0 0 chr3L 17656742 17656801 -6886756 + (CTG)n Simple_repeat Simple_repeat 1 59 0 3 719 260 213 0 31 chr3L 17656923 17657020 -6886537 - ROO_I LTR Pao -7522 734 641 3 719 255 293 0 0 chr3L 17658467 17658542 -6885015 + (TTCGGG)n Simple_repeat Simple_repeat 4 78 0 3 719 23 0 0 0 chr3L 17660458 17660481 -6883076 + AT_rich Low_complexity Low_complexity 1 23 0 3 719 38 61 0 0 chr3L 17662893 17662959 -6880598 + AT_rich Low_complexity Low_complexity 1 66 0 3 719 206 182 23 0 chr3L 17663278 17663322 -6880235 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 719 183 139 0 0 chr3L 17664778 17664814 -6878743 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 719 33 0 0 0 chr3L 17668491 17668524 -6875033 + AT_rich Low_complexity Low_complexity 1 33 0 3 719 186 43 0 0 chr3L 17669350 17669373 -6874184 + (CGAAA)n Simple_repeat Simple_repeat 3 25 0 3 719 29 60 0 0 chr3L 17670420 17670470 -6873087 + AT_rich Low_complexity Low_complexity 1 50 0 3 719 22 0 0 0 chr3L 17673188 17673210 -6870347 + AT_rich Low_complexity Low_complexity 1 22 0 3 719 47 0 0 0 chr3L 17673283 17673330 -6870227 + AT_rich Low_complexity Low_complexity 1 47 0 3 719 226 118 19 38 chr3L 17673624 17673677 -6869880 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 719 21 71 0 0 chr3L 17675865 17675907 -6867650 + AT_rich Low_complexity Low_complexity 1 42 0 3 719 22 94 0 0 chr3L 17676809 17676873 -6866684 + AT_rich Low_complexity Low_complexity 1 64 0 3 719 28 29 0 0 chr3L 17678301 17678336 -6865221 + AT_rich Low_complexity Low_complexity 1 35 0 3 719 201 39 0 0 chr3L 17679906 17679932 -6863625 + (GCTG)n Simple_repeat Simple_repeat 3 28 0 3 719 45 62 0 0 chr3L 17680965 17681045 -6862512 + AT_rich Low_complexity Low_complexity 1 80 0 3 719 255 222 0 0 chr3L 17682849 17682930 -6860627 + (CAA)n Simple_repeat Simple_repeat 3 83 0 3 719 22 0 0 0 chr3L 17684426 17684448 -6859109 + AT_rich Low_complexity Low_complexity 1 22 0 3 719 197 108 27 0 chr3L 17684454 17684491 -6859066 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 719 245 159 16 0 chr3L 17684631 17684694 -6858863 + (CA)n Simple_repeat Simple_repeat 1 64 0 3 719 24 53 0 0 chr3L 17686646 17686684 -6856873 + AT_rich Low_complexity Low_complexity 1 38 0 3 719 34 24 0 0 chr3L 17691355 17691396 -6852161 + AT_rich Low_complexity Low_complexity 1 41 0 3 719 234 0 0 0 chr3L 17691419 17691445 -6852112 + (TTTAA)n Simple_repeat Simple_repeat 2 27 0 3 719 4015 0 0 0 chr3L 17691445 17691938 -6851619 - DOC6_DM LINE Jockey -4 4218 3726 3 719 201 39 0 0 chr3L 17692516 17692542 -6851015 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 719 509 87 317 0 chr3L 17693515 17693619 -6849938 + DNAREP1_DM LINE Penelope 458 594 0 3 719 318 67 0 0 chr3L 17694318 17694363 -6849194 + (TG)n Simple_repeat Simple_repeat 2 46 0 3 719 24 53 0 0 chr3L 17694619 17694657 -6848900 + AT_rich Low_complexity Low_complexity 1 38 0 3 720 255 39 115 0 chr3L 17695226 17695304 -6848253 + (TA)n Simple_repeat Simple_repeat 2 88 0 3 720 36 53 0 0 chr3L 17695304 17695361 -6848196 + AT_rich Low_complexity Low_complexity 1 57 0 3 720 21 0 0 0 chr3L 17696070 17696091 -6847466 + AT_rich Low_complexity Low_complexity 1 21 0 3 720 21 0 0 0 chr3L 17696126 17696147 -6847410 + AT_rich Low_complexity Low_complexity 1 21 0 3 720 218 81 27 0 chr3L 17707202 17707239 -6836318 + (TGGA)n Simple_repeat Simple_repeat 2 39 0 3 720 211 170 0 36 chr3L 17714621 17714676 -6828881 + (AAATG)n Simple_repeat Simple_repeat 1 53 0 3 720 23 0 0 0 chr3L 17715332 17715355 -6828202 + AT_rich Low_complexity Low_complexity 1 23 0 3 720 27 0 0 0 chr3L 17723169 17723196 -6820361 + AT_rich Low_complexity Low_complexity 1 27 0 3 720 2918 20 0 3 chr3L 17724005 17724362 -6819195 - MDG1_LTR LTR Gypsy 0 442 87 3 720 423 100 0 0 chr3L 17724362 17724432 -6819125 + (TTA)n Simple_repeat Simple_repeat 3 72 0 3 720 1120 10 9 12 chr3L 17724436 17724611 -6818946 - MDG1_I LTR Gypsy 0 6596 6435 3 720 45855 8 3 2 chr3L 17724610 17730154 -6813403 + MDG1_I LTR Gypsy 760 6310 -286 3 720 6001 3 0 8 chr3L 17730154 17730870 -6812687 - MDG1_I LTR Gypsy -5849 747 38 3 720 2507 14 0 0 chr3L 17730895 17731192 -6812365 - MDG1_LTR LTR Gypsy -59 383 87 3 720 423 100 0 0 chr3L 17731192 17731262 -6812295 + (TTA)n Simple_repeat Simple_repeat 3 72 0 3 720 279 93 0 0 chr3L 17731831 17731874 -6811683 + (ATG)n Simple_repeat Simple_repeat 1 43 0 3 720 23 0 0 0 chr3L 17733151 17733174 -6810383 + AT_rich Low_complexity Low_complexity 1 23 0 3 720 28 86 0 0 chr3L 17737001 17737071 -6806486 + AT_rich Low_complexity Low_complexity 1 70 0 3 720 22 35 0 0 chr3L 17740484 17740513 -6803044 + AT_rich Low_complexity Low_complexity 1 29 0 3 720 212 231 0 0 chr3L 17740795 17740834 -6802723 + (CAG)n Simple_repeat Simple_repeat 3 41 0 3 720 22 0 0 0 chr3L 17741526 17741548 -6802009 + AT_rich Low_complexity Low_complexity 1 22 0 3 720 23 0 0 0 chr3L 17749980 17750003 -6793554 + AT_rich Low_complexity Low_complexity 1 23 0 3 720 30 27 0 0 chr3L 17753375 17753412 -6790145 + AT_rich Low_complexity Low_complexity 1 37 0 3 720 25 51 0 0 chr3L 17754246 17754285 -6789272 + AT_rich Low_complexity Low_complexity 1 39 0 3 720 45 0 0 0 chr3L 17755081 17755126 -6788431 + AT_rich Low_complexity Low_complexity 1 45 0 3 720 22 0 0 0 chr3L 17757605 17757627 -6785930 + AT_rich Low_complexity Low_complexity 1 22 0 3 720 21 36 0 0 chr3L 17757778 17757806 -6785751 + AT_rich Low_complexity Low_complexity 1 28 0 3 720 234 268 0 0 chr3L 17760628 17760684 -6782873 + (CAA)n Simple_repeat Simple_repeat 2 57 0 3 720 202 200 0 0 chr3L 17762060 17762100 -6781457 + (CA)n Simple_repeat Simple_repeat 1 40 0 3 720 33 43 0 0 chr3L 17765800 17765847 -6777710 + AT_rich Low_complexity Low_complexity 1 47 0 3 720 31 26 0 0 chr3L 17767421 17767459 -6776098 + AT_rich Low_complexity Low_complexity 1 38 0 3 720 26 0 0 0 chr3L 17769809 17769835 -6773722 + AT_rich Low_complexity Low_complexity 1 26 0 3 720 216 273 0 15 chr3L 17771831 17771898 -6771659 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 720 182 62 31 0 chr3L 17774452 17774484 -6769073 + (CAATA)n Simple_repeat Simple_repeat 3 35 0 3 720 26 50 0 0 chr3L 17775314 17775354 -6768203 + AT_rich Low_complexity Low_complexity 1 40 0 3 720 249 109 0 0 chr3L 17775634 17775680 -6767877 + (A)n Simple_repeat Simple_repeat 1 46 0 3 720 225 0 0 0 chr3L 17776467 17776492 -6767065 + (CA)n Simple_repeat Simple_repeat 2 26 0 3 720 37 23 0 0 chr3L 17776609 17776653 -6766904 + AT_rich Low_complexity Low_complexity 1 44 0 3 720 36 53 0 0 chr3L 17776703 17776760 -6766797 + AT_rich Low_complexity Low_complexity 1 57 0 3 720 220 220 0 0 chr3L 17777832 17777882 -6765675 + A-rich Low_complexity Low_complexity 1 50 0 3 720 23 54 0 0 chr3L 17779434 17779471 -6764086 + AT_rich Low_complexity Low_complexity 1 37 0 3 720 23 33 0 0 chr3L 17780059 17780089 -6763468 + AT_rich Low_complexity Low_complexity 1 30 0 3 720 21 36 0 0 chr3L 17780900 17780928 -6762629 + AT_rich Low_complexity Low_complexity 1 28 0 3 720 27 81 0 0 chr3L 17781338 17781400 -6762157 + AT_rich Low_complexity Low_complexity 1 62 0 3 720 21 57 0 0 chr3L 17782940 17782975 -6760582 + AT_rich Low_complexity Low_complexity 1 35 0 3 720 21 36 0 0 chr3L 17785145 17785173 -6758384 + AT_rich Low_complexity Low_complexity 1 28 0 3 720 37 0 0 0 chr3L 17786642 17786679 -6756878 + AT_rich Low_complexity Low_complexity 1 37 0 3 720 260 136 30 74 chr3L 17791315 17791450 -6752107 + (CTG)n Simple_repeat Simple_repeat 3 131 0 3 720 234 284 12 12 chr3L 17791610 17791692 -6751865 + (CTG)n Simple_repeat Simple_repeat 1 82 0 3 720 12683 82 5 2 chr3L 17792963 17794695 -6748862 - S_DM DNA Tc1 0 1736 1 3 720 26 30 0 0 chr3L 17795676 17795709 -6747848 + AT_rich Low_complexity Low_complexity 1 33 0 3 720 28 71 0 0 chr3L 17797968 17798024 -6745533 + AT_rich Low_complexity Low_complexity 1 56 0 3 720 204 67 0 0 chr3L 17799528 17799558 -6743999 + (T)n Simple_repeat Simple_repeat 1 30 0 3 720 22 0 0 0 chr3L 17802341 17802363 -6741194 + AT_rich Low_complexity Low_complexity 1 22 0 3 720 23 54 0 0 chr3L 17805348 17805385 -6738172 + AT_rich Low_complexity Low_complexity 1 37 0 3 720 21 36 0 0 chr3L 17805682 17805710 -6737847 + AT_rich Low_complexity Low_complexity 1 28 0 3 720 243 146 0 0 chr3L 17806222 17806263 -6737294 + (ATTCG)n Simple_repeat Simple_repeat 5 45 0 3 720 24 0 0 0 chr3L 17814908 17814932 -6728625 + AT_rich Low_complexity Low_complexity 1 24 0 3 720 23 0 0 0 chr3L 17817360 17817383 -6726174 + AT_rich Low_complexity Low_complexity 1 23 0 3 720 21 36 0 0 chr3L 17819808 17819836 -6723721 + AT_rich Low_complexity Low_complexity 1 28 0 3 720 22 35 0 0 chr3L 17824137 17824166 -6719391 + AT_rich Low_complexity Low_complexity 1 29 0 3 720 186 71 0 0 chr3L 17824329 17824357 -6719200 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 3 721 234 299 0 0 chr3L 17825958 17826025 -6717532 - TART_B1 LINE telomeric -4409 6245 6179 3 721 255 318 0 0 chr3L 17826506 17826616 -6716941 + (TGG)n Simple_repeat Simple_repeat 3 112 0 3 721 305 284 0 0 chr3L 17826960 17827055 -6716502 + DNAREP1_DM LINE Penelope 304 398 -196 3 721 695 127 8 25 chr3L 17827687 17827808 -6715749 + BS2 LINE Jockey 4603 4721 0 3 721 23 0 0 0 chr3L 17827808 17827831 -6715726 + AT_rich Low_complexity Low_complexity 1 23 0 3 721 280 309 0 0 chr3L 17828053 17828163 -6715394 + (TGG)n Simple_repeat Simple_repeat 3 112 0 3 721 859 80 0 0 chr3L 17828935 17829047 -6714510 + DNAREP1_DM LINE Penelope 2 113 -481 3 721 1199 81 95 95 chr3L 17829045 17829277 -6714280 + DNAREP1_DM LINE Penelope 362 593 -1 3 721 242 191 0 0 chr3L 17837378 17837425 -6706132 + (CCG)n Simple_repeat Simple_repeat 2 48 0 3 721 205 86 0 28 chr3L 17837916 17837952 -6705605 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 3 721 225 208 0 0 chr3L 17838379 17838427 -6705130 + DNAREP1_DM LINE Penelope 431 478 -116 3 721 30 69 0 0 chr3L 17842697 17842755 -6700802 + AT_rich Low_complexity Low_complexity 1 58 0 3 721 31 26 0 0 chr3L 17848305 17848343 -6695214 + AT_rich Low_complexity Low_complexity 1 38 0 3 721 24 0 0 0 chr3L 17850684 17850708 -6692849 + AT_rich Low_complexity Low_complexity 1 24 0 3 721 28 0 0 0 chr3L 17850993 17851021 -6692536 + AT_rich Low_complexity Low_complexity 1 28 0 3 721 231 188 0 0 chr3L 17851220 17851268 -6692289 + (TATATG)n Simple_repeat Simple_repeat 4 51 0 3 721 1926 183 89 46 chr3L 17851994 17852498 -6691059 - DNAREP1_DM LINE Penelope -68 526 1 3 721 29 60 0 0 chr3L 17852907 17852957 -6690600 + AT_rich Low_complexity Low_complexity 1 50 0 3 721 552 130 0 0 chr3L 17853385 17853477 -6690080 + (TGG)n Simple_repeat Simple_repeat 2 93 0 3 721 23 0 0 0 chr3L 17853580 17853603 -6689954 + AT_rich Low_complexity Low_complexity 1 23 0 3 721 2998 9 0 0 chr3L 17854013 17854359 -6689198 + Invader4_LTR LTR Gypsy 1 346 0 3 721 283 180 0 62 chr3L 17854368 17854433 -6689124 + DNAREP1_DM LINE Penelope 405 465 -129 3 721 649 13 0 0 chr3L 17854843 17854919 -6688638 + PROTOP_B DNA P 1 76 -1077 3 721 4592 107 25 4 chr3L 17854928 17855697 -6687860 - M4DM DNA Transib -36 1399 615 3 721 238 298 84 47 chr3L 17856108 17856323 -6687234 + TRANSIB1 DNA Transib 2182 2404 -610 3 721 1603 101 77 48 chr3L 17856272 17856585 -6686972 - M4DM DNA Transib -1024 411 90 3 721 30 69 0 0 chr3L 17856884 17856942 -6686615 + AT_rich Low_complexity Low_complexity 1 58 0 3 721 40847 0 0 0 chr3L 17856942 17861657 -6681900 + DOC LINE Jockey 12 4725 0 3 721 1820 184 140 7 chr3L 17862240 17862704 -6680853 - DNAREP1_DM LINE Penelope -68 526 1 3 721 36 53 0 0 chr3L 17863112 17863169 -6680388 + AT_rich Low_complexity Low_complexity 1 57 0 3 721 23 0 0 0 chr3L 17863696 17863719 -6679838 + AT_rich Low_complexity Low_complexity 1 23 0 3 721 249 102 61 0 chr3L 17863966 17864015 -6679542 + DMSAT6 Satellite Satellite 267 318 -152 3 721 647 13 0 0 chr3L 17864350 17864426 -6679131 + PROTOP_B DNA P 1 76 -1077 3 721 4643 104 25 4 chr3L 17864435 17865204 -6678353 - M4DM DNA Transib -36 1399 615 3 721 259 291 45 29 chr3L 17865616 17865854 -6677703 + TRANSIB2 DNA Transib 2182 2427 -417 3 721 2275 90 52 39 chr3L 17865780 17866186 -6677371 - M4DM DNA Transib -1024 411 1 3 721 1725 51 51 0 chr3L 17866186 17866419 -6677138 + PROTOP_B DNA P 79 322 -831 3 721 38 22 0 0 chr3L 17866419 17866464 -6677093 + AT_rich Low_complexity Low_complexity 1 45 0 3 721 4022 60 78 32 chr3L 17866464 17867118 -6676439 + PROTOP_B DNA P 470 1153 0 3 721 1949 179 89 46 chr3L 17868215 17868718 -6674839 - DNAREP1_DM LINE Penelope -68 526 2 3 721 29 60 0 0 chr3L 17869128 17869178 -6674379 + AT_rich Low_complexity Low_complexity 1 50 0 3 721 228 35 0 0 chr3L 17869623 17869652 -6673905 + (A)n Simple_repeat Simple_repeat 1 29 0 3 721 362 65 31 42 chr3L 17869728 17869824 -6673733 + (TATAA)n Simple_repeat Simple_repeat 3 97 0 3 721 21 36 0 0 chr3L 17870496 17870524 -6673033 + AT_rich Low_complexity Low_complexity 1 28 0 3 721 256 152 202 0 chr3L 17870862 17870941 -6672616 + Transib-N1_DM DNA Transib 21 115 -399 3 721 26 0 0 0 chr3L 17871733 17871759 -6671798 + AT_rich Low_complexity Low_complexity 1 26 0 3 721 236 212 45 0 chr3L 17871871 17871937 -6671620 - DNAREP1_DM LINE Penelope -496 98 30 3 721 22 0 0 0 chr3L 17875811 17875833 -6667724 + AT_rich Low_complexity Low_complexity 1 22 0 3 721 28 29 0 0 chr3L 17876437 17876472 -6667085 + AT_rich Low_complexity Low_complexity 1 35 0 3 721 28 61 0 0 chr3L 17876733 17876782 -6666775 + AT_rich Low_complexity Low_complexity 1 49 0 3 721 22 80 0 0 chr3L 17877685 17877735 -6665822 + AT_rich Low_complexity Low_complexity 1 50 0 3 721 25 83 0 0 chr3L 17877874 17877934 -6665623 + AT_rich Low_complexity Low_complexity 1 60 0 3 721 23 0 0 0 chr3L 17878039 17878062 -6665495 + AT_rich Low_complexity Low_complexity 1 23 0 3 721 682 221 63 81 chr3L 17878664 17878886 -6664671 + DNAREP1_DM LINE Penelope 367 584 -10 3 721 41 87 0 0 chr3L 17879049 17879153 -6664404 + AT_rich Low_complexity Low_complexity 1 104 0 3 721 23 0 0 0 chr3L 17881212 17881235 -6662322 + AT_rich Low_complexity Low_complexity 1 23 0 3 721 23 68 0 0 chr3L 17884471 17884515 -6659042 + AT_rich Low_complexity Low_complexity 1 44 0 3 721 31 0 0 0 chr3L 17884872 17884903 -6658654 + AT_rich Low_complexity Low_complexity 1 31 0 3 721 28 0 0 0 chr3L 17885402 17885430 -6658127 + AT_rich Low_complexity Low_complexity 1 28 0 3 721 22 56 0 0 chr3L 17886077 17886113 -6657444 + AT_rich Low_complexity Low_complexity 1 36 0 3 721 21 71 0 0 chr3L 17891676 17891718 -6651839 + AT_rich Low_complexity Low_complexity 1 42 0 3 721 24 53 0 0 chr3L 17896780 17896818 -6646739 + AT_rich Low_complexity Low_complexity 1 38 0 3 721 22 35 0 0 chr3L 17898220 17898249 -6645308 + AT_rich Low_complexity Low_complexity 1 29 0 3 721 201 147 0 0 chr3L 17900780 17900814 -6642743 + (TTG)n Simple_repeat Simple_repeat 1 34 0 3 721 22 35 0 0 chr3L 17906781 17906810 -6636747 + AT_rich Low_complexity Low_complexity 1 29 0 3 721 22 56 0 0 chr3L 17907047 17907083 -6636474 + AT_rich Low_complexity Low_complexity 1 36 0 3 721 27 92 0 0 chr3L 17907882 17907958 -6635599 + AT_rich Low_complexity Low_complexity 1 76 0 3 721 23 33 0 0 chr3L 17908661 17908691 -6634866 + AT_rich Low_complexity Low_complexity 1 30 0 3 721 236 194 63 16 chr3L 17909047 17909110 -6634447 - DNAREP1_DM LINE Penelope -513 81 16 3 721 192 158 0 0 chr3L 17910798 17910836 -6632721 + (AAATG)n Simple_repeat Simple_repeat 3 40 0 3 721 23 54 0 0 chr3L 17910970 17911007 -6632550 + AT_rich Low_complexity Low_complexity 1 37 0 3 721 4416 6 2 0 chr3L 17911526 17912043 -6631514 - NOMAD_LTR LTR Gypsy 0 518 1 3 721 7357 8 0 2 chr3L 17912043 17912904 -6630653 - NOMAD_I LTR Gypsy 0 6572 5714 3 721 6960 2 107 0 chr3L 17912888 17913755 -6629802 - NOMAD_I LTR Gypsy -5612 960 1 3 721 4416 6 2 0 chr3L 17913755 17914272 -6629285 - NOMAD_LTR LTR Gypsy 0 518 1 3 721 27 0 0 0 chr3L 17915188 17915215 -6628342 + AT_rich Low_complexity Low_complexity 1 27 0 3 721 220 264 35 0 chr3L 17915875 17915962 -6627595 + A-rich Low_complexity Low_complexity 3 92 0 3 721 270 195 0 0 chr3L 17916049 17916126 -6627431 + (TG)n Simple_repeat Simple_repeat 1 77 0 3 721 26 0 0 0 chr3L 17916713 17916739 -6626818 + AT_rich Low_complexity Low_complexity 1 26 0 3 721 228 143 0 0 chr3L 17917695 17917737 -6625820 + (TTG)n Simple_repeat Simple_repeat 2 43 0 3 721 23 0 0 0 chr3L 17918457 17918480 -6625077 + AT_rich Low_complexity Low_complexity 1 23 0 3 721 28 71 0 0 chr3L 17921790 17921846 -6621711 + AT_rich Low_complexity Low_complexity 1 56 0 3 721 27 0 0 0 chr3L 17922444 17922471 -6621086 + AT_rich Low_complexity Low_complexity 1 27 0 3 721 22 35 0 0 chr3L 17926887 17926916 -6616641 + AT_rich Low_complexity Low_complexity 1 29 0 3 721 30 77 0 0 chr3L 17929746 17929811 -6613746 + AT_rich Low_complexity Low_complexity 1 65 0 3 721 34 0 0 0 chr3L 17930885 17930919 -6612638 + AT_rich Low_complexity Low_complexity 1 34 0 3 721 21 0 0 0 chr3L 17932725 17932746 -6610811 + AT_rich Low_complexity Low_complexity 1 21 0 3 721 31 0 0 0 chr3L 17933650 17933681 -6609876 + AT_rich Low_complexity Low_complexity 1 31 0 3 721 24 32 0 0 chr3L 17938263 17938294 -6605263 + AT_rich Low_complexity Low_complexity 1 31 0 3 721 22 56 0 0 chr3L 17939182 17939218 -6604339 + AT_rich Low_complexity Low_complexity 1 36 0 3 721 23 33 0 0 chr3L 17941878 17941908 -6601649 + AT_rich Low_complexity Low_complexity 1 30 0 3 721 22 35 0 0 chr3L 17942932 17942961 -6600596 + AT_rich Low_complexity Low_complexity 1 29 0 3 721 22 35 0 0 chr3L 17944390 17944419 -6599138 + AT_rich Low_complexity Low_complexity 1 29 0 3 721 188 0 0 69 chr3L 17944784 17944813 -6598744 + (CATA)n Simple_repeat Simple_repeat 3 29 0 3 721 209 169 77 0 chr3L 17945324 17945389 -6598168 + (TTTG)n Simple_repeat Simple_repeat 2 71 0 3 721 21 36 0 0 chr3L 17945403 17945431 -6598126 + AT_rich Low_complexity Low_complexity 1 28 0 3 721 27 0 0 0 chr3L 17946114 17946141 -6597416 + AT_rich Low_complexity Low_complexity 1 27 0 3 721 21 0 0 0 chr3L 17946417 17946438 -6597119 + AT_rich Low_complexity Low_complexity 1 21 0 3 721 198 0 0 0 chr3L 17946485 17946507 -6597050 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 3 721 201 74 0 0 chr3L 17948318 17948345 -6595212 + (CTG)n Simple_repeat Simple_repeat 1 27 0 3 721 32 0 0 0 chr3L 17951362 17951394 -6592163 + AT_rich Low_complexity Low_complexity 1 32 0 3 721 30 0 0 0 chr3L 17954650 17954680 -6588877 + AT_rich Low_complexity Low_complexity 1 30 0 3 721 25 65 0 0 chr3L 17955122 17955168 -6588389 + AT_rich Low_complexity Low_complexity 1 46 0 3 721 31 0 0 0 chr3L 17955202 17955233 -6588324 + AT_rich Low_complexity Low_complexity 1 31 0 3 722 24 0 0 0 chr3L 17957041 17957065 -6586492 + AT_rich Low_complexity Low_complexity 1 24 0 3 722 210 37 0 0 chr3L 17958063 17958090 -6585467 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 722 555 139 0 0 chr3L 17958228 17958329 -6585228 + (CAG)n Simple_repeat Simple_repeat 1 101 0 3 722 201 39 0 0 chr3L 17958676 17958702 -6584855 + (TTTCG)n Simple_repeat Simple_repeat 2 27 0 3 722 214 167 0 0 chr3L 17959695 17959731 -6583826 + (TATATG)n Simple_repeat Simple_repeat 1 36 0 3 722 25 31 0 0 chr3L 17960819 17960851 -6582706 + AT_rich Low_complexity Low_complexity 1 32 0 3 722 200 167 76 0 chr3L 17960916 17960982 -6582575 + T-rich Low_complexity Low_complexity 2 72 0 3 722 220 0 56 28 chr3L 17961095 17961131 -6582426 + (CATTT)n Simple_repeat Simple_repeat 3 39 0 3 722 297 89 0 0 chr3L 17963038 17963083 -6580474 + (CTG)n Simple_repeat Simple_repeat 3 47 0 3 722 215 226 0 16 chr3L 17963451 17963514 -6580043 + (CTG)n Simple_repeat Simple_repeat 1 62 0 3 722 187 203 0 28 chr3L 17963537 17963608 -6579949 + (TTG)n Simple_repeat Simple_repeat 3 71 0 3 722 287 226 0 31 chr3L 17963740 17963836 -6579721 + (CTG)n Simple_repeat Simple_repeat 3 95 0 3 722 263 165 0 81 chr3L 17963890 17963976 -6579581 - ROO_I LTR Pao -7519 737 659 3 722 180 0 0 0 chr3L 17964585 17964605 -6578952 + (CTG)n Simple_repeat Simple_repeat 3 22 0 3 722 22 99 0 0 chr3L 17968302 17968373 -6575184 + AT_rich Low_complexity Low_complexity 1 71 0 3 722 198 0 0 0 chr3L 17969051 17969073 -6574484 + (GAA)n Simple_repeat Simple_repeat 1 22 0 3 722 219 114 0 0 chr3L 17969569 17969604 -6573953 + (GAATG)n Simple_repeat Simple_repeat 3 37 0 3 722 22 56 0 0 chr3L 17970481 17970517 -6573040 + AT_rich Low_complexity Low_complexity 1 36 0 3 722 285 29 0 0 chr3L 17971059 17971093 -6572464 + (CAG)n Simple_repeat Simple_repeat 3 36 0 3 722 21 36 0 0 chr3L 17972670 17972698 -6570859 + AT_rich Low_complexity Low_complexity 1 28 0 3 722 288 53 0 0 chr3L 17972759 17972797 -6570760 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 722 21 0 0 0 chr3L 17973323 17973344 -6570213 + AT_rich Low_complexity Low_complexity 1 21 0 3 722 228 197 0 27 chr3L 17974631 17974724 -6568833 + (CTGTG)n Simple_repeat Simple_repeat 1 90 0 3 722 180 182 0 0 chr3L 17975047 17975091 -6568466 + (CA)n Simple_repeat Simple_repeat 2 45 0 3 722 200 205 0 0 chr3L 17975992 17976031 -6567526 + (TTCGG)n Simple_repeat Simple_repeat 1 39 0 3 722 212 175 0 0 chr3L 17978411 17978451 -6565106 + A-rich Low_complexity Low_complexity 1 40 0 3 722 249 83 0 0 chr3L 17980367 17980403 -6563154 + (CAG)n Simple_repeat Simple_repeat 2 37 0 3 722 228 196 0 19 chr3L 17980614 17980666 -6562891 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 722 189 154 0 0 chr3L 17980778 17980817 -6562740 + (CTG)n Simple_repeat Simple_repeat 3 41 0 3 722 22 35 0 0 chr3L 17987755 17987784 -6555773 + AT_rich Low_complexity Low_complexity 1 29 0 3 722 41 21 0 0 chr3L 17988191 17988239 -6555318 + AT_rich Low_complexity Low_complexity 1 48 0 3 722 206 245 0 0 chr3L 17989656 17989709 -6553848 + A-rich Low_complexity Low_complexity 1 53 0 3 722 266 299 0 0 chr3L 17991701 17991818 -6551739 + (CTG)n Simple_repeat Simple_repeat 3 119 0 3 722 32 0 0 0 chr3L 17992280 17992312 -6551245 + AT_rich Low_complexity Low_complexity 1 32 0 3 722 206 62 31 0 chr3L 17992532 17992564 -6550993 + (CGAAA)n Simple_repeat Simple_repeat 4 36 0 3 722 21 36 0 0 chr3L 17995021 17995049 -6548508 + AT_rich Low_complexity Low_complexity 1 28 0 3 722 222 149 0 21 chr3L 17995218 17995266 -6548291 + A-rich Low_complexity Low_complexity 3 49 0 3 722 207 0 0 0 chr3L 17996320 17996343 -6547214 + (TAA)n Simple_repeat Simple_repeat 2 24 0 3 722 28 0 0 0 chr3L 17996614 17996642 -6546915 + AT_rich Low_complexity Low_complexity 1 28 0 3 722 21 36 0 0 chr3L 17997455 17997483 -6546074 + AT_rich Low_complexity Low_complexity 1 28 0 3 722 23 54 0 0 chr3L 17999151 17999188 -6544369 + AT_rich Low_complexity Low_complexity 1 37 0 3 722 23 0 0 0 chr3L 17999256 17999279 -6544278 + AT_rich Low_complexity Low_complexity 1 23 0 3 722 213 39 0 0 chr3L 18006002 18006028 -6537529 + (CAA)n Simple_repeat Simple_repeat 3 28 0 3 722 207 0 0 0 chr3L 18006397 18006420 -6537137 + (T)n Simple_repeat Simple_repeat 1 23 0 3 722 183 129 0 0 chr3L 18006450 18006481 -6537076 + (GTGTG)n Simple_repeat Simple_repeat 1 31 0 3 722 183 184 0 0 chr3L 18008789 18008827 -6534730 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 3 722 192 152 0 0 chr3L 18009737 18009770 -6533787 + (AAATG)n Simple_repeat Simple_repeat 4 36 0 3 722 30 59 0 0 chr3L 18010122 18010173 -6533384 + AT_rich Low_complexity Low_complexity 1 51 0 3 722 233 293 0 0 chr3L 18012122 18012204 -6531353 + GA-rich Low_complexity Low_complexity 2 83 0 3 722 21 0 0 0 chr3L 18013221 18013242 -6530315 + AT_rich Low_complexity Low_complexity 1 21 0 3 722 25 31 0 0 chr3L 18013720 18013752 -6529805 + AT_rich Low_complexity Low_complexity 1 32 0 3 722 37 39 0 0 chr3L 18013825 18013876 -6529681 + AT_rich Low_complexity Low_complexity 1 51 0 3 722 21 57 0 0 chr3L 18014010 18014045 -6529512 + AT_rich Low_complexity Low_complexity 1 35 0 3 722 180 0 0 0 chr3L 18015325 18015345 -6528212 + (TC)n Simple_repeat Simple_repeat 2 21 0 3 722 189 0 0 0 chr3L 18015989 18016010 -6527547 + (GA)n Simple_repeat Simple_repeat 1 21 0 3 722 22 56 0 0 chr3L 18016095 18016131 -6527426 + AT_rich Low_complexity Low_complexity 1 36 0 3 722 201 39 0 0 chr3L 18017427 18017453 -6526104 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 722 29 28 0 0 chr3L 18017537 18017573 -6525984 + AT_rich Low_complexity Low_complexity 1 36 0 3 722 220 289 0 0 chr3L 18019955 18020007 -6523550 + (CAA)n Simple_repeat Simple_repeat 1 52 0 3 722 38 39 0 0 chr3L 18020195 18020247 -6523310 + AT_rich Low_complexity Low_complexity 1 52 0 3 722 22 0 0 0 chr3L 18022043 18022065 -6521492 + AT_rich Low_complexity Low_complexity 1 22 0 3 722 22 94 0 0 chr3L 18022354 18022418 -6521139 + AT_rich Low_complexity Low_complexity 1 64 0 3 722 21 71 0 0 chr3L 18023202 18023244 -6520313 + AT_rich Low_complexity Low_complexity 1 42 0 3 722 226 0 59 0 chr3L 18024131 18024165 -6519392 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 722 198 91 0 0 chr3L 18027082 18027115 -6516442 + (TG)n Simple_repeat Simple_repeat 1 33 0 3 722 22 0 0 0 chr3L 18027460 18027482 -6516075 + AT_rich Low_complexity Low_complexity 1 22 0 3 722 186 167 0 0 chr3L 18028342 18028378 -6515179 + (CA)n Simple_repeat Simple_repeat 1 36 0 3 722 27 62 0 0 chr3L 18028554 18028602 -6514955 + AT_rich Low_complexity Low_complexity 1 48 0 3 722 23 0 0 0 chr3L 18031453 18031476 -6512081 + AT_rich Low_complexity Low_complexity 1 23 0 3 722 22 35 0 0 chr3L 18033284 18033313 -6510244 + AT_rich Low_complexity Low_complexity 1 29 0 3 722 28 0 0 0 chr3L 18035076 18035104 -6508453 + AT_rich Low_complexity Low_complexity 1 28 0 3 722 24 32 0 0 chr3L 18035910 18035941 -6507616 + AT_rich Low_complexity Low_complexity 1 31 0 3 722 29 28 0 0 chr3L 18036796 18036832 -6506725 + AT_rich Low_complexity Low_complexity 1 36 0 3 722 21 0 0 0 chr3L 18037335 18037356 -6506201 + AT_rich Low_complexity Low_complexity 1 21 0 3 722 21 36 0 0 chr3L 18039688 18039716 -6503841 + AT_rich Low_complexity Low_complexity 1 28 0 3 722 261 98 0 0 chr3L 18039896 18039937 -6503620 + (CA)n Simple_repeat Simple_repeat 2 42 0 3 722 3907 2 0 0 chr3L 18040862 18041290 -6502267 + ROO_LTR LTR Pao 1 428 0 3 722 71457 1 16 2 chr3L 18041290 18049433 -6494124 + ROO_I LTR Pao 1 8256 0 3 722 3907 2 0 0 chr3L 18049433 18049861 -6493696 + ROO_LTR LTR Pao 1 428 0 3 722 22 35 0 0 chr3L 18050438 18050467 -6493090 + AT_rich Low_complexity Low_complexity 1 29 0 3 722 245 145 0 52 chr3L 18051367 18051425 -6492132 + (CTG)n Simple_repeat Simple_repeat 1 55 0 3 722 260 120 0 20 chr3L 18051500 18051551 -6492006 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 722 349 110 14 14 chr3L 18051644 18051718 -6491839 + (CTG)n Simple_repeat Simple_repeat 1 74 0 3 722 255 152 0 0 chr3L 18051836 18051882 -6491675 + (TGG)n Simple_repeat Simple_repeat 2 47 0 3 722 237 197 0 0 chr3L 18052076 18052147 -6491410 + (CTG)n Simple_repeat Simple_repeat 1 71 0 3 722 204 188 0 0 chr3L 18052481 18052513 -6491044 + (CTG)n Simple_repeat Simple_repeat 2 33 0 3 722 223 188 0 20 chr3L 18053173 18053222 -6490335 + (AGTTG)n Simple_repeat Simple_repeat 2 49 0 3 722 27 29 0 0 chr3L 18054750 18054784 -6488773 + AT_rich Low_complexity Low_complexity 1 34 0 3 722 30 45 0 0 chr3L 18056106 18056150 -6487407 + AT_rich Low_complexity Low_complexity 1 44 0 3 722 21 0 0 0 chr3L 18056213 18056234 -6487323 + AT_rich Low_complexity Low_complexity 1 21 0 3 722 26 50 0 0 chr3L 18060491 18060531 -6483026 + AT_rich Low_complexity Low_complexity 1 40 0 3 722 27 0 0 0 chr3L 18061257 18061284 -6482273 + AT_rich Low_complexity Low_complexity 1 27 0 3 722 27 0 0 0 chr3L 18061699 18061726 -6481831 + AT_rich Low_complexity Low_complexity 1 27 0 3 722 24 0 0 0 chr3L 18061971 18061995 -6481562 + AT_rich Low_complexity Low_complexity 1 24 0 3 722 39 50 0 0 chr3L 18063394 18063454 -6480103 + AT_rich Low_complexity Low_complexity 1 60 0 3 722 21 36 0 0 chr3L 18063506 18063534 -6480023 + AT_rich Low_complexity Low_complexity 1 28 0 3 722 34 0 0 0 chr3L 18063570 18063604 -6479953 + AT_rich Low_complexity Low_complexity 1 34 0 3 722 38 93 0 0 chr3L 18065371 18065479 -6478078 + AT_rich Low_complexity Low_complexity 1 108 0 3 722 55 56 0 0 chr3L 18065530 18065620 -6477937 + AT_rich Low_complexity Low_complexity 1 90 0 3 722 25 31 0 0 chr3L 18066330 18066362 -6477195 + AT_rich Low_complexity Low_complexity 1 32 0 3 722 210 37 0 0 chr3L 18071079 18071106 -6472451 + (GA)n Simple_repeat Simple_repeat 2 28 0 3 722 30 0 0 0 chr3L 18071298 18071328 -6472229 + AT_rich Low_complexity Low_complexity 1 30 0 3 722 198 150 0 0 chr3L 18073309 18073349 -6470208 + (T)n Simple_repeat Simple_repeat 1 40 0 3 722 34 0 0 0 chr3L 18075716 18075750 -6467807 + AT_rich Low_complexity Low_complexity 1 34 0 3 722 194 62 31 0 chr3L 18077210 18077242 -6466315 + (CA)n Simple_repeat Simple_repeat 2 34 0 3 722 180 97 0 0 chr3L 18078912 18078943 -6464614 + (TTG)n Simple_repeat Simple_repeat 1 31 0 3 722 210 71 0 0 chr3L 18079067 18079095 -6464462 + (TC)n Simple_repeat Simple_repeat 2 29 0 3 722 1721 102 163 0 chr3L 18080852 18081177 -6462380 + DNAREP1_DM LINE Penelope 217 594 0 3 722 27 0 0 0 chr3L 18083279 18083306 -6460251 + AT_rich Low_complexity Low_complexity 1 27 0 3 722 212 159 45 0 chr3L 18084493 18084537 -6459020 + (TTAA)n Simple_repeat Simple_repeat 1 46 0 3 722 27 0 0 0 chr3L 18085978 18086005 -6457552 + AT_rich Low_complexity Low_complexity 1 27 0 3 722 23 0 0 0 chr3L 18086265 18086288 -6457269 + AT_rich Low_complexity Low_complexity 1 23 0 3 722 22 35 0 0 chr3L 18087207 18087236 -6456321 + AT_rich Low_complexity Low_complexity 1 29 0 3 723 26 30 0 0 chr3L 18088627 18088660 -6454897 + AT_rich Low_complexity Low_complexity 1 33 0 3 723 34 0 0 0 chr3L 18089424 18089458 -6454099 + AT_rich Low_complexity Low_complexity 1 34 0 3 723 24 0 0 0 chr3L 18093617 18093641 -6449916 + AT_rich Low_complexity Low_complexity 1 24 0 3 723 24 0 0 0 chr3L 18093860 18093884 -6449673 + AT_rich Low_complexity Low_complexity 1 24 0 3 723 22 0 0 0 chr3L 18094298 18094320 -6449237 + AT_rich Low_complexity Low_complexity 1 22 0 3 723 36 0 0 0 chr3L 18096294 18096330 -6447227 + AT_rich Low_complexity Low_complexity 1 36 0 3 723 192 77 0 0 chr3L 18098520 18098546 -6445011 + (ATTCG)n Simple_repeat Simple_repeat 2 27 0 3 723 21 0 0 0 chr3L 18099505 18099526 -6444031 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 378 129 0 0 chr3L 18106415 18106477 -6437080 + (TA)n Simple_repeat Simple_repeat 1 62 0 3 723 25 0 0 0 chr3L 18106968 18106993 -6436564 + AT_rich Low_complexity Low_complexity 1 25 0 3 723 35 24 0 0 chr3L 18107119 18107161 -6436396 + AT_rich Low_complexity Low_complexity 1 42 0 3 723 21 0 0 0 chr3L 18111279 18111300 -6432257 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 24 0 0 0 chr3L 18112817 18112841 -6430716 + AT_rich Low_complexity Low_complexity 1 24 0 3 723 22 0 0 0 chr3L 18114080 18114102 -6429455 + AT_rich Low_complexity Low_complexity 1 22 0 3 723 355 216 0 177 chr3L 18115207 18115348 -6428209 - DNAREP1_DM LINE Penelope -108 486 371 3 723 218 125 0 24 chr3L 18115435 18115476 -6428081 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 723 33 56 0 0 chr3L 18116814 18116868 -6426689 + AT_rich Low_complexity Low_complexity 1 54 0 3 723 21 36 0 0 chr3L 18121059 18121087 -6422470 + AT_rich Low_complexity Low_complexity 1 28 0 3 723 22 35 0 0 chr3L 18122426 18122455 -6421102 + AT_rich Low_complexity Low_complexity 1 29 0 3 723 24 0 0 0 chr3L 18127352 18127376 -6416181 + AT_rich Low_complexity Low_complexity 1 24 0 3 723 30 69 0 0 chr3L 18127651 18127709 -6415848 + AT_rich Low_complexity Low_complexity 1 58 0 3 723 24 32 0 0 chr3L 18130145 18130176 -6413381 + AT_rich Low_complexity Low_complexity 1 31 0 3 723 22 56 0 0 chr3L 18130875 18130911 -6412646 + AT_rich Low_complexity Low_complexity 1 36 0 3 723 30 69 0 0 chr3L 18131863 18131921 -6411636 + AT_rich Low_complexity Low_complexity 1 58 0 3 723 21 0 0 0 chr3L 18137393 18137414 -6406143 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 185 0 0 39 chr3L 18138951 18138977 -6404580 + (TAAAAA)n Simple_repeat Simple_repeat 6 30 0 3 723 267 31 0 0 chr3L 18141382 18141414 -6402143 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 723 21 0 0 0 chr3L 18142756 18142777 -6400780 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 36 23 0 0 chr3L 18145876 18145919 -6397638 + AT_rich Low_complexity Low_complexity 1 43 0 3 723 21 57 0 0 chr3L 18148193 18148228 -6395329 + AT_rich Low_complexity Low_complexity 1 35 0 3 723 25 95 0 0 chr3L 18150906 18150980 -6392577 + AT_rich Low_complexity Low_complexity 1 74 0 3 723 42 82 0 0 chr3L 18152796 18152894 -6390663 + AT_rich Low_complexity Low_complexity 1 98 0 3 723 30 45 0 0 chr3L 18157026 18157070 -6386487 + AT_rich Low_complexity Low_complexity 1 44 0 3 723 50 31 0 0 chr3L 18157245 18157309 -6386248 + AT_rich Low_complexity Low_complexity 1 64 0 3 723 24 77 0 0 chr3L 18157452 18157504 -6386053 + AT_rich Low_complexity Low_complexity 1 52 0 3 723 27 29 0 0 chr3L 18160482 18160516 -6383041 + AT_rich Low_complexity Low_complexity 1 34 0 3 723 41 0 0 0 chr3L 18165825 18165866 -6377691 + AT_rich Low_complexity Low_complexity 1 41 0 3 723 215 213 0 0 chr3L 18168182 18168229 -6375328 + (CCGAA)n Simple_repeat Simple_repeat 3 49 0 3 723 186 43 0 0 chr3L 18169923 18169946 -6373611 + (A)n Simple_repeat Simple_repeat 1 23 0 3 723 226 185 0 30 chr3L 18172983 18173050 -6370507 + (CCCA)n Simple_repeat Simple_repeat 1 65 0 3 723 21 0 0 0 chr3L 18177191 18177212 -6366345 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 202 258 0 0 chr3L 18178045 18178111 -6365446 + GA-rich Low_complexity Low_complexity 1 66 0 3 723 21 0 0 0 chr3L 18178884 18178905 -6364652 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 186 103 0 0 chr3L 18179740 18179769 -6363788 + (TATG)n Simple_repeat Simple_repeat 3 31 0 3 723 28 29 0 0 chr3L 18179802 18179837 -6363720 + AT_rich Low_complexity Low_complexity 1 35 0 3 723 237 159 0 0 chr3L 18180090 18180134 -6363423 + CT-rich Low_complexity Low_complexity 2 45 0 3 723 226 159 0 22 chr3L 18181487 18181532 -6362025 + (TATG)n Simple_repeat Simple_repeat 4 47 0 3 723 24 0 0 0 chr3L 18182320 18182344 -6361213 + AT_rich Low_complexity Low_complexity 1 24 0 3 723 213 216 0 0 chr3L 18182706 18182743 -6360814 + (TATG)n Simple_repeat Simple_repeat 3 39 0 3 723 620 79 0 0 chr3L 18182743 18182832 -6360725 - S_DM DNA Tc1 0 1736 1648 3 723 2823 89 0 0 chr3L 18182873 18183289 -6360268 + S_DM DNA Tc1 1321 1736 0 3 723 205 200 0 0 chr3L 18184320 18184360 -6359197 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 723 23 68 0 0 chr3L 18184507 18184551 -6359006 + AT_rich Low_complexity Low_complexity 1 44 0 3 723 207 157 0 0 chr3L 18186151 18186202 -6357355 + A-rich Low_complexity Low_complexity 6 56 0 3 723 25 31 0 0 chr3L 18187869 18187901 -6355656 + AT_rich Low_complexity Low_complexity 1 32 0 3 723 21 0 0 0 chr3L 18190004 18190025 -6353532 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 25 31 0 0 chr3L 18190692 18190724 -6352833 + AT_rich Low_complexity Low_complexity 1 32 0 3 723 24 32 0 0 chr3L 18190992 18191023 -6352534 + AT_rich Low_complexity Low_complexity 1 31 0 3 723 21 0 0 0 chr3L 18196710 18196731 -6346826 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 23 33 0 0 chr3L 18198001 18198031 -6345526 + AT_rich Low_complexity Low_complexity 1 30 0 3 723 201 0 48 71 chr3L 18198145 18198187 -6345370 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 3 723 231 133 0 0 chr3L 18198215 18198260 -6345297 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 723 195 42 0 0 chr3L 18199078 18199102 -6344455 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 723 28 0 0 0 chr3L 18199748 18199776 -6343781 + AT_rich Low_complexity Low_complexity 1 28 0 3 723 22 0 0 0 chr3L 18201868 18201890 -6341667 + AT_rich Low_complexity Low_complexity 1 22 0 3 723 26 74 0 0 chr3L 18203215 18203269 -6340288 + AT_rich Low_complexity Low_complexity 1 54 0 3 723 30 0 0 0 chr3L 18203627 18203657 -6339900 + AT_rich Low_complexity Low_complexity 1 30 0 3 723 208 121 0 0 chr3L 18205596 18205629 -6337928 + (TTTCG)n Simple_repeat Simple_repeat 2 34 0 3 723 21 71 0 0 chr3L 18212673 18212715 -6330842 + AT_rich Low_complexity Low_complexity 1 42 0 3 723 29 28 0 0 chr3L 18212763 18212799 -6330758 + AT_rich Low_complexity Low_complexity 1 36 0 3 723 21 0 0 0 chr3L 18213388 18213409 -6330148 + AT_rich Low_complexity Low_complexity 1 21 0 3 723 25 51 0 0 chr3L 18214416 18214455 -6329102 + AT_rich Low_complexity Low_complexity 1 39 0 3 723 234 265 0 0 chr3L 18214577 18214645 -6328912 + A-rich Low_complexity Low_complexity 1 68 0 3 723 21 36 0 0 chr3L 18215079 18215107 -6328450 + AT_rich Low_complexity Low_complexity 1 28 0 3 723 23 0 0 0 chr3L 18215138 18215161 -6328396 + AT_rich Low_complexity Low_complexity 1 23 0 3 723 222 128 0 0 chr3L 18217971 18218010 -6325547 + (AACTG)n Simple_repeat Simple_repeat 5 43 0 3 723 222 37 0 0 chr3L 18218537 18218564 -6324993 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 3 723 30 0 0 0 chr3L 18218780 18218810 -6324747 + AT_rich Low_complexity Low_complexity 1 30 0 3 724 31 26 0 0 chr3L 18219820 18219858 -6323699 + AT_rich Low_complexity Low_complexity 1 38 0 3 724 28 29 0 0 chr3L 18219917 18219952 -6323605 + AT_rich Low_complexity Low_complexity 1 35 0 3 724 38 0 0 0 chr3L 18220526 18220564 -6322993 + AT_rich Low_complexity Low_complexity 1 38 0 3 724 195 42 0 0 chr3L 18221713 18221737 -6321820 + (TGG)n Simple_repeat Simple_repeat 3 26 0 3 724 30 27 0 0 chr3L 18222288 18222325 -6321232 + AT_rich Low_complexity Low_complexity 1 37 0 3 724 26 0 0 0 chr3L 18223199 18223225 -6320332 + AT_rich Low_complexity Low_complexity 1 26 0 3 724 195 162 0 0 chr3L 18224030 18224067 -6319490 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 724 28 29 0 0 chr3L 18224797 18224832 -6318725 + AT_rich Low_complexity Low_complexity 1 35 0 3 724 28 29 0 0 chr3L 18226194 18226229 -6317328 + AT_rich Low_complexity Low_complexity 1 35 0 3 724 24 0 0 0 chr3L 18226314 18226338 -6317219 + AT_rich Low_complexity Low_complexity 1 24 0 3 724 208 147 0 0 chr3L 18228011 18228045 -6315512 + (T)n Simple_repeat Simple_repeat 1 34 0 3 724 25 65 0 0 chr3L 18229610 18229656 -6313901 + AT_rich Low_complexity Low_complexity 1 46 0 3 724 203 61 30 0 chr3L 18230795 18230828 -6312729 + (TTAAA)n Simple_repeat Simple_repeat 4 37 0 3 724 206 240 0 0 chr3L 18232135 18232185 -6311372 + (CAT)n Simple_repeat Simple_repeat 1 50 0 3 724 192 212 0 0 chr3L 18232715 18232781 -6310776 + (CAA)n Simple_repeat Simple_repeat 3 68 0 3 724 180 111 0 0 chr3L 18233301 18233328 -6310229 + (TATATG)n Simple_repeat Simple_repeat 3 29 0 3 724 223 235 0 0 chr3L 18233865 18233916 -6309641 + (CGGA)n Simple_repeat Simple_repeat 1 51 0 3 724 53 57 0 0 chr3L 18236448 18236536 -6307021 + AT_rich Low_complexity Low_complexity 1 88 0 3 724 183 129 0 0 chr3L 18236696 18236727 -6306830 + (A)n Simple_repeat Simple_repeat 1 31 0 3 724 24 0 0 0 chr3L 18237350 18237374 -6306183 + AT_rich Low_complexity Low_complexity 1 24 0 3 724 27 29 0 0 chr3L 18237472 18237506 -6306051 + AT_rich Low_complexity Low_complexity 1 34 0 3 724 21 0 0 0 chr3L 18238938 18238959 -6304598 + AT_rich Low_complexity Low_complexity 1 21 0 3 724 24 0 0 0 chr3L 18244261 18244285 -6299272 + AT_rich Low_complexity Low_complexity 1 24 0 3 724 24 0 0 0 chr3L 18247579 18247603 -6295954 + AT_rich Low_complexity Low_complexity 1 24 0 3 724 36 53 0 0 chr3L 18250856 18250913 -6292644 + AT_rich Low_complexity Low_complexity 1 57 0 3 724 25 0 0 0 chr3L 18254765 18254790 -6288767 + AT_rich Low_complexity Low_complexity 1 25 0 3 724 24 0 0 0 chr3L 18256564 18256588 -6286969 + AT_rich Low_complexity Low_complexity 1 24 0 3 724 46 19 0 0 chr3L 18258316 18258369 -6285188 + AT_rich Low_complexity Low_complexity 1 53 0 3 724 33 0 0 0 chr3L 18260201 18260234 -6283323 + AT_rich Low_complexity Low_complexity 1 33 0 3 724 192 125 0 0 chr3L 18265954 18265986 -6277571 + (CCCGAA)n Simple_repeat Simple_repeat 2 33 0 3 724 219 88 0 0 chr3L 18266029 18266063 -6277494 + (ACTG)n Simple_repeat Simple_repeat 3 36 0 3 724 21 71 0 0 chr3L 18266326 18266368 -6277189 + AT_rich Low_complexity Low_complexity 1 42 0 3 724 35 0 0 0 chr3L 18266389 18266424 -6277133 + AT_rich Low_complexity Low_complexity 1 35 0 3 724 22 70 0 0 chr3L 18271974 18272017 -6271540 + AT_rich Low_complexity Low_complexity 1 43 0 3 724 31 68 0 0 chr3L 18275562 18275621 -6267936 + AT_rich Low_complexity Low_complexity 1 59 0 3 724 22 35 0 0 chr3L 18279896 18279925 -6263632 + AT_rich Low_complexity Low_complexity 1 29 0 3 724 23 0 0 0 chr3L 18283673 18283696 -6259861 + AT_rich Low_complexity Low_complexity 1 23 0 3 724 34 42 0 0 chr3L 18284637 18284685 -6258872 + AT_rich Low_complexity Low_complexity 1 48 0 3 724 25 65 0 0 chr3L 18287425 18287471 -6256086 + AT_rich Low_complexity Low_complexity 1 46 0 3 724 22 0 0 0 chr3L 18290665 18290687 -6252870 + AT_rich Low_complexity Low_complexity 1 22 0 3 724 26 74 0 0 chr3L 18290702 18290756 -6252801 + AT_rich Low_complexity Low_complexity 1 54 0 3 724 27 0 0 0 chr3L 18291863 18291890 -6251667 + AT_rich Low_complexity Low_complexity 1 27 0 3 724 25 0 0 0 chr3L 18292751 18292776 -6250781 + AT_rich Low_complexity Low_complexity 1 25 0 3 724 23 33 0 0 chr3L 18293894 18293924 -6249633 + AT_rich Low_complexity Low_complexity 1 30 0 3 724 29 78 0 0 chr3L 18295604 18295668 -6247889 + AT_rich Low_complexity Low_complexity 1 64 0 3 724 30 27 0 0 chr3L 18295810 18295847 -6247710 + AT_rich Low_complexity Low_complexity 1 37 0 3 724 232 227 10 40 chr3L 18297032 18297133 -6246424 - ROO_I LTR Pao -7515 741 644 3 724 31 68 0 0 chr3L 18298710 18298769 -6244788 + AT_rich Low_complexity Low_complexity 1 59 0 3 724 30 0 0 0 chr3L 18300480 18300510 -6243047 + AT_rich Low_complexity Low_complexity 1 30 0 3 724 21 0 0 0 chr3L 18301734 18301755 -6241802 + AT_rich Low_complexity Low_complexity 1 21 0 3 724 23 86 0 0 chr3L 18303448 18303506 -6240051 + AT_rich Low_complexity Low_complexity 1 58 0 3 724 43 64 0 0 chr3L 18304638 18304716 -6238841 + AT_rich Low_complexity Low_complexity 1 78 0 3 724 21 36 0 0 chr3L 18310375 18310403 -6233154 + AT_rich Low_complexity Low_complexity 1 28 0 3 724 25 0 0 0 chr3L 18312431 18312456 -6231101 + AT_rich Low_complexity Low_complexity 1 25 0 3 724 23 54 0 0 chr3L 18317279 18317316 -6226241 + AT_rich Low_complexity Low_complexity 1 37 0 3 724 33 66 0 0 chr3L 18318862 18318923 -6224634 + AT_rich Low_complexity Low_complexity 1 61 0 3 724 25 75 0 0 chr3L 18318996 18319049 -6224508 + AT_rich Low_complexity Low_complexity 1 53 0 3 724 21 36 0 0 chr3L 18319075 18319103 -6224454 + AT_rich Low_complexity Low_complexity 1 28 0 3 724 24 32 0 0 chr3L 18321995 18322026 -6221531 + AT_rich Low_complexity Low_complexity 1 31 0 3 724 25 31 0 0 chr3L 18323001 18323033 -6220524 + AT_rich Low_complexity Low_complexity 1 32 0 3 724 21 0 0 0 chr3L 18326291 18326312 -6217245 + AT_rich Low_complexity Low_complexity 1 21 0 3 724 26 64 0 0 chr3L 18330027 18330074 -6213483 + AT_rich Low_complexity Low_complexity 1 47 0 3 724 189 0 0 0 chr3L 18330074 18330095 -6213462 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 3 724 28 48 0 0 chr3L 18333283 18333325 -6210232 + AT_rich Low_complexity Low_complexity 1 42 0 3 724 24 67 0 0 chr3L 18335058 18335103 -6208454 + AT_rich Low_complexity Low_complexity 1 45 0 3 724 30 27 0 0 chr3L 18336069 18336106 -6207451 + AT_rich Low_complexity Low_complexity 1 37 0 3 724 23 68 0 0 chr3L 18337745 18337789 -6205768 + AT_rich Low_complexity Low_complexity 1 44 0 3 724 42 20 0 0 chr3L 18337855 18337904 -6205653 + AT_rich Low_complexity Low_complexity 1 49 0 3 724 198 0 0 0 chr3L 18338514 18338536 -6205021 + (GA)n Simple_repeat Simple_repeat 2 23 0 3 724 30 27 0 0 chr3L 18345342 18345379 -6198178 + AT_rich Low_complexity Low_complexity 1 37 0 3 724 21 36 0 0 chr3L 18346037 18346065 -6197492 + AT_rich Low_complexity Low_complexity 1 28 0 3 724 25 0 0 0 chr3L 18348871 18348896 -6194661 + AT_rich Low_complexity Low_complexity 1 25 0 3 725 21 36 0 0 chr3L 18351603 18351631 -6191926 + AT_rich Low_complexity Low_complexity 1 28 0 3 725 43 92 0 0 chr3L 18351652 18351772 -6191785 + AT_rich Low_complexity Low_complexity 1 120 0 3 725 215 174 0 21 chr3L 18359546 18359593 -6183964 + T-rich Low_complexity Low_complexity 5 50 0 3 725 22 99 0 0 chr3L 18360139 18360210 -6183347 + AT_rich Low_complexity Low_complexity 1 71 0 3 725 41 58 0 0 chr3L 18360268 18360337 -6183220 + AT_rich Low_complexity Low_complexity 1 69 0 3 725 31 88 0 0 chr3L 18360405 18360485 -6183072 + AT_rich Low_complexity Low_complexity 1 80 0 3 725 25 75 0 0 chr3L 18362037 18362090 -6181467 + AT_rich Low_complexity Low_complexity 1 53 0 3 725 198 220 0 0 chr3L 18365685 18365744 -6177813 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 725 30 59 0 0 chr3L 18370102 18370153 -6173404 + AT_rich Low_complexity Low_complexity 1 51 0 3 725 24 53 0 0 chr3L 18372972 18373010 -6170547 + AT_rich Low_complexity Low_complexity 1 38 0 3 725 24 0 0 0 chr3L 18374458 18374482 -6169075 + AT_rich Low_complexity Low_complexity 1 24 0 3 725 189 0 0 0 chr3L 18381743 18381764 -6161793 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 3 725 23 0 0 0 chr3L 18381926 18381949 -6161608 + AT_rich Low_complexity Low_complexity 1 23 0 3 725 45 34 0 0 chr3L 18382417 18382476 -6161081 + AT_rich Low_complexity Low_complexity 1 59 0 3 725 27 0 0 0 chr3L 18383374 18383401 -6160156 + AT_rich Low_complexity Low_complexity 1 27 0 3 725 44 99 0 0 chr3L 18385302 18385444 -6158113 + AT_rich Low_complexity Low_complexity 1 142 0 3 725 26 0 0 0 chr3L 18389877 18389903 -6153654 + AT_rich Low_complexity Low_complexity 1 26 0 3 725 338 70 0 34 chr3L 18390229 18390288 -6153269 + (TTA)n Simple_repeat Simple_repeat 2 58 0 3 725 24 0 0 0 chr3L 18392097 18392121 -6151436 + AT_rich Low_complexity Low_complexity 1 24 0 3 725 54 56 0 0 chr3L 18395866 18395955 -6147602 + AT_rich Low_complexity Low_complexity 1 89 0 3 725 30 0 0 0 chr3L 18397205 18397235 -6146322 + AT_rich Low_complexity Low_complexity 1 30 0 3 725 22 0 0 0 chr3L 18398139 18398161 -6145396 + AT_rich Low_complexity Low_complexity 1 22 0 3 725 24 0 0 0 chr3L 18399738 18399762 -6143795 + AT_rich Low_complexity Low_complexity 1 24 0 3 725 31 0 0 0 chr3L 18400110 18400141 -6143416 + AT_rich Low_complexity Low_complexity 1 31 0 3 725 189 121 0 0 chr3L 18400888 18400921 -6142636 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 3 725 25 65 0 0 chr3L 18403975 18404021 -6139536 + AT_rich Low_complexity Low_complexity 1 46 0 3 725 189 0 0 0 chr3L 18405595 18405616 -6137941 + (GCTG)n Simple_repeat Simple_repeat 4 24 0 3 725 33 56 0 0 chr3L 18405960 18406014 -6137543 + AT_rich Low_complexity Low_complexity 1 54 0 3 725 267 114 0 0 chr3L 18406658 18406702 -6136855 + (TGG)n Simple_repeat Simple_repeat 2 45 0 3 725 47 33 0 0 chr3L 18408071 18408132 -6135425 + AT_rich Low_complexity Low_complexity 1 61 0 3 725 208 135 0 0 chr3L 18408373 18408410 -6135147 + (CA)n Simple_repeat Simple_repeat 2 38 0 3 725 186 71 0 0 chr3L 18409172 18409200 -6134357 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 725 31 58 0 0 chr3L 18411471 18411523 -6132034 + AT_rich Low_complexity Low_complexity 1 52 0 3 725 24 0 0 0 chr3L 18411584 18411608 -6131949 + AT_rich Low_complexity Low_complexity 1 24 0 3 725 39 104 0 0 chr3L 18414320 18414464 -6129093 + AT_rich Low_complexity Low_complexity 1 144 0 3 725 26 30 0 0 chr3L 18415556 18415589 -6127968 + AT_rich Low_complexity Low_complexity 1 33 0 3 725 23 33 0 0 chr3L 18419154 18419184 -6124373 + AT_rich Low_complexity Low_complexity 1 30 0 3 725 30 59 0 0 chr3L 18419869 18419920 -6123637 + AT_rich Low_complexity Low_complexity 1 51 0 3 725 189 0 0 0 chr3L 18421247 18421268 -6122289 + (TTCCC)n Simple_repeat Simple_repeat 1 21 0 3 725 31 58 0 0 chr3L 18423285 18423337 -6120220 + AT_rich Low_complexity Low_complexity 1 52 0 3 725 26 50 0 0 chr3L 18425172 18425212 -6118345 + AT_rich Low_complexity Low_complexity 1 40 0 3 725 23 68 0 0 chr3L 18425240 18425284 -6118273 + AT_rich Low_complexity Low_complexity 1 44 0 3 725 209 179 0 0 chr3L 18426370 18426409 -6117148 + (CACCAT)n Simple_repeat Simple_repeat 5 43 0 3 725 22 0 0 0 chr3L 18429377 18429399 -6114158 + AT_rich Low_complexity Low_complexity 1 22 0 3 725 25 51 0 0 chr3L 18431919 18431958 -6111599 + AT_rich Low_complexity Low_complexity 1 39 0 3 725 267 114 0 0 chr3L 18433147 18433191 -6110366 + (TC)n Simple_repeat Simple_repeat 2 45 0 3 725 25 0 0 0 chr3L 18436792 18436817 -6106740 + AT_rich Low_complexity Low_complexity 1 25 0 3 725 38 75 0 0 chr3L 18439174 18439254 -6104303 + AT_rich Low_complexity Low_complexity 1 80 0 3 725 22 88 0 0 chr3L 18441740 18441797 -6101760 + AT_rich Low_complexity Low_complexity 1 57 0 3 725 30 0 0 0 chr3L 18442113 18442143 -6101414 + AT_rich Low_complexity Low_complexity 1 30 0 3 725 21 71 0 0 chr3L 18443895 18443937 -6099620 + AT_rich Low_complexity Low_complexity 1 42 0 3 725 238 98 39 0 chr3L 18445142 18445193 -6098364 + (TAAA)n Simple_repeat Simple_repeat 2 54 0 3 725 27 29 0 0 chr3L 18446144 18446178 -6097379 + AT_rich Low_complexity Low_complexity 1 34 0 3 725 24 53 0 0 chr3L 18446242 18446280 -6097277 + AT_rich Low_complexity Low_complexity 1 38 0 3 725 519 65 39 31 chr3L 18446321 18446448 -6097109 + (TAA)n Simple_repeat Simple_repeat 3 130 0 3 725 225 0 0 0 chr3L 18446660 18446685 -6096872 + (GAGTG)n Simple_repeat Simple_repeat 1 25 0 3 725 21 36 0 0 chr3L 18447126 18447154 -6096403 + AT_rich Low_complexity Low_complexity 1 28 0 3 725 32 43 0 42 chr3L 18447214 18447286 -6096271 + AT_rich Low_complexity Low_complexity 1 69 0 3 725 23 0 0 0 chr3L 18448715 18448738 -6094819 + AT_rich Low_complexity Low_complexity 1 23 0 3 725 22 0 0 0 chr3L 18451869 18451891 -6091666 + AT_rich Low_complexity Low_complexity 1 22 0 3 725 22 35 0 0 chr3L 18451962 18451991 -6091566 + AT_rich Low_complexity Low_complexity 1 29 0 3 725 27 73 0 0 chr3L 18452548 18452603 -6090954 + AT_rich Low_complexity Low_complexity 1 55 0 3 725 28 0 0 0 chr3L 18452989 18453017 -6090540 + AT_rich Low_complexity Low_complexity 1 28 0 3 725 26 30 0 0 chr3L 18454207 18454240 -6089317 + AT_rich Low_complexity Low_complexity 1 33 0 3 725 24 32 0 0 chr3L 18454312 18454343 -6089214 + AT_rich Low_complexity Low_complexity 1 31 0 3 725 26 50 0 0 chr3L 18456602 18456642 -6086915 + AT_rich Low_complexity Low_complexity 1 40 0 3 725 945 121 58 56 chr3L 18456794 18457213 -6086344 - DNAREP1_DM LINE Penelope -262 332 120 3 725 21 57 0 0 chr3L 18458030 18458065 -6085492 + AT_rich Low_complexity Low_complexity 1 35 0 3 725 246 220 0 0 chr3L 18458385 18458435 -6085122 + (CAT)n Simple_repeat Simple_repeat 1 50 0 3 725 432 55 18 0 chr3L 18462924 18462979 -6080578 + Gypsy2_I LTR Gypsy 1199 1254 -4881 3 725 1884 146 134 15 chr3L 18462977 18463389 -6080168 + Gypsy2_I LTR Gypsy 1369 1873 -5139 3 725 5635 129 45 23 chr3L 18463424 18464391 -6079166 + Gypsy2_I LTR Gypsy 3550 4538 -1597 3 725 353 225 0 0 chr3L 18468968 18469039 -6074518 - DNAREP1_DM LINE Penelope -517 77 7 3 725 21 0 0 0 chr3L 18479541 18479562 -6063995 + AT_rich Low_complexity Low_complexity 1 21 0 3 725 25 75 0 0 chr3L 18480636 18480689 -6062868 + AT_rich Low_complexity Low_complexity 1 53 0 3 725 33 25 0 0 chr3L 18480706 18480746 -6062811 + AT_rich Low_complexity Low_complexity 1 40 0 3 726 180 0 0 0 chr3L 18481865 18481885 -6061672 + (TCC)n Simple_repeat Simple_repeat 2 21 0 3 726 64 26 0 0 chr3L 18482127 18482205 -6061352 + AT_rich Low_complexity Low_complexity 1 78 0 3 726 31 31 0 59 chr3L 18483584 18483652 -6059905 + AT_rich Low_complexity Low_complexity 1 64 0 3 726 27 0 0 0 chr3L 18485756 18485783 -6057774 + AT_rich Low_complexity Low_complexity 1 27 0 3 726 23 0 0 0 chr3L 18486402 18486425 -6057132 + AT_rich Low_complexity Low_complexity 1 23 0 3 726 26 101 0 0 chr3L 18487148 18487237 -6056320 + AT_rich Low_complexity Low_complexity 1 89 0 3 726 22 0 0 0 chr3L 18487531 18487553 -6056004 + AT_rich Low_complexity Low_complexity 1 22 0 3 726 28 0 0 0 chr3L 18490592 18490620 -6052937 + AT_rich Low_complexity Low_complexity 1 28 0 3 726 22 35 0 0 chr3L 18494659 18494688 -6048869 + AT_rich Low_complexity Low_complexity 1 29 0 3 726 198 0 0 0 chr3L 18495017 18495039 -6048518 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 726 189 107 0 0 chr3L 18495064 18495092 -6048465 + (CAACT)n Simple_repeat Simple_repeat 5 32 0 3 726 23 54 0 0 chr3L 18497177 18497214 -6046343 + AT_rich Low_complexity Low_complexity 1 37 0 3 726 324 111 37 0 chr3L 18498131 18498185 -6045372 - DNAREP1_DM LINE Penelope 0 594 539 3 726 284 220 0 0 chr3L 18498363 18498422 -6045135 - DNAREP1_DM LINE Penelope -535 59 1 3 726 24 32 0 0 chr3L 18498668 18498699 -6044858 + AT_rich Low_complexity Low_complexity 1 31 0 3 726 6400 4 0 0 chr3L 18499285 18500000 -6043557 + FW_DM LINE Jockey 1294 2008 -2684 3 726 23248 0 0 0 chr3L 18500000 18502684 -6040873 + FW_DM LINE Jockey 2009 4692 0 3 726 21 0 0 0 chr3L 18504121 18504142 -6039415 + AT_rich Low_complexity Low_complexity 1 21 0 3 726 44706 1 0 1 chr3L 18508065 18513190 -6030367 + BS LINE Jockey 4 5124 -2 3 726 3741 2 0 0 chr3L 18521782 18522210 -6021347 - ROO_LTR LTR Pao 0 428 1 3 726 70311 1 1 0 chr3L 18522210 18530456 -6013101 - ROO_I LTR Pao 0 8256 1 3 726 3736 0 0 2 chr3L 18530456 18530885 -6012672 - ROO_LTR LTR Pao 0 428 1 3 726 22 0 0 0 chr3L 18530957 18530979 -6012578 + AT_rich Low_complexity Low_complexity 1 22 0 3 726 32 26 0 0 chr3L 18534123 18534162 -6009395 + AT_rich Low_complexity Low_complexity 1 39 0 3 726 27 49 0 0 chr3L 18534923 18534964 -6008593 + AT_rich Low_complexity Low_complexity 1 41 0 3 726 189 74 0 0 chr3L 18536554 18536581 -6006976 + (CATA)n Simple_repeat Simple_repeat 2 28 0 3 726 26 64 0 0 chr3L 18538765 18538812 -6004745 + AT_rich Low_complexity Low_complexity 1 47 0 3 726 22 0 0 0 chr3L 18539401 18539423 -6004134 + AT_rich Low_complexity Low_complexity 1 22 0 3 726 317 0 0 70 chr3L 18542953 18543010 -6000547 + (TTA)n Simple_repeat Simple_repeat 1 53 0 3 726 26 50 0 0 chr3L 18543096 18543136 -6000421 + AT_rich Low_complexity Low_complexity 1 40 0 3 726 25 0 0 0 chr3L 18544334 18544359 -5999198 + AT_rich Low_complexity Low_complexity 1 25 0 3 726 29 28 0 0 chr3L 18548993 18549029 -5994528 + AT_rich Low_complexity Low_complexity 1 36 0 3 726 24 32 0 0 chr3L 18549142 18549173 -5994384 + AT_rich Low_complexity Low_complexity 1 31 0 3 726 213 39 0 0 chr3L 18549715 18549741 -5993816 + (TCCA)n Simple_repeat Simple_repeat 2 27 0 3 726 21 0 0 0 chr3L 18555454 18555475 -5988082 + AT_rich Low_complexity Low_complexity 1 21 0 3 726 25 0 0 0 chr3L 18556433 18556458 -5987099 + AT_rich Low_complexity Low_complexity 1 25 0 3 726 21 0 0 0 chr3L 18556559 18556580 -5986977 + AT_rich Low_complexity Low_complexity 1 21 0 3 726 31 58 0 0 chr3L 18557551 18557603 -5985954 + AT_rich Low_complexity Low_complexity 1 52 0 3 726 613 138 134 76 chr3L 18560980 18561152 -5982405 + DNAREP1_DM LINE Penelope 397 578 -16 3 726 22 70 0 0 chr3L 18561199 18561242 -5982315 + AT_rich Low_complexity Low_complexity 1 43 0 3 726 22 35 0 0 chr3L 18562259 18562288 -5981269 + AT_rich Low_complexity Low_complexity 1 29 0 3 726 26 74 0 0 chr3L 18565222 18565276 -5978281 + AT_rich Low_complexity Low_complexity 1 54 0 3 726 21 36 0 0 chr3L 18566256 18566284 -5977273 + AT_rich Low_complexity Low_complexity 1 28 0 3 726 26 50 0 0 chr3L 18571211 18571251 -5972306 + AT_rich Low_complexity Low_complexity 1 40 0 3 726 26 0 0 0 chr3L 18571901 18571927 -5971630 + AT_rich Low_complexity Low_complexity 1 26 0 3 726 23 54 0 0 chr3L 18573342 18573379 -5970178 + AT_rich Low_complexity Low_complexity 1 37 0 3 726 25 0 0 0 chr3L 18579056 18579081 -5964476 + AT_rich Low_complexity Low_complexity 1 25 0 3 726 21 0 0 0 chr3L 18583226 18583247 -5960310 + AT_rich Low_complexity Low_complexity 1 21 0 3 726 5340 32 6 6 chr3L 18583802 18584483 -5959074 - DMCR1A LINE CR1 0 4470 3790 3 726 16340 7 0 1 chr3L 18587103 18589023 -5954534 + DOC LINE Jockey 2807 4725 0 3 726 24 0 0 0 chr3L 18589470 18589494 -5954063 + AT_rich Low_complexity Low_complexity 1 24 0 3 726 258 32 0 0 chr3L 18590860 18590891 -5952666 + (TA)n Simple_repeat Simple_repeat 2 32 0 3 726 30 77 0 0 chr3L 18593230 18593295 -5950262 + AT_rich Low_complexity Low_complexity 1 65 0 3 726 25 65 0 0 chr3L 18595344 18595390 -5948167 + AT_rich Low_complexity Low_complexity 1 46 0 3 726 26 0 0 0 chr3L 18596161 18596187 -5947370 + AT_rich Low_complexity Low_complexity 1 26 0 3 726 22 56 0 0 chr3L 18606682 18606718 -5936839 + AT_rich Low_complexity Low_complexity 1 36 0 3 726 21 0 0 0 chr3L 18609327 18609348 -5934209 + AT_rich Low_complexity Low_complexity 1 21 0 3 726 21 0 0 0 chr3L 18611103 18611124 -5932433 + AT_rich Low_complexity Low_complexity 1 21 0 3 727 208 216 0 0 chr3L 18614828 18614865 -5928692 + (CTG)n Simple_repeat Simple_repeat 2 38 0 3 727 186 43 0 0 chr3L 18614940 18614963 -5928594 + (CTG)n Simple_repeat Simple_repeat 2 24 0 3 727 24 53 0 0 chr3L 18618506 18618544 -5925013 + AT_rich Low_complexity Low_complexity 1 38 0 3 727 27 0 0 0 chr3L 18618817 18618844 -5924713 + AT_rich Low_complexity Low_complexity 1 27 0 3 727 24 0 0 0 chr3L 18619480 18619504 -5924053 + AT_rich Low_complexity Low_complexity 1 24 0 3 727 201 167 0 0 chr3L 18619569 18619605 -5923952 + A-rich Low_complexity Low_complexity 1 36 0 3 727 215 150 0 24 chr3L 18619979 18620020 -5923537 + (ATTCG)n Simple_repeat Simple_repeat 3 42 0 3 727 32 81 0 0 chr3L 18621405 18621479 -5922078 + AT_rich Low_complexity Low_complexity 1 74 0 3 727 21 36 0 0 chr3L 18625881 18625909 -5917648 + AT_rich Low_complexity Low_complexity 1 28 0 3 727 26 0 0 0 chr3L 18626132 18626158 -5917399 + AT_rich Low_complexity Low_complexity 1 26 0 3 727 27 49 0 0 chr3L 18626838 18626879 -5916678 + AT_rich Low_complexity Low_complexity 1 41 0 3 727 22 109 0 0 chr3L 18627244 18627336 -5916221 + AT_rich Low_complexity Low_complexity 1 92 0 3 727 22 0 0 0 chr3L 18629626 18629648 -5913909 + AT_rich Low_complexity Low_complexity 1 22 0 3 727 31 26 0 0 chr3L 18629663 18629701 -5913856 + AT_rich Low_complexity Low_complexity 1 38 0 3 727 34 24 0 0 chr3L 18630374 18630415 -5913142 + AT_rich Low_complexity Low_complexity 1 41 0 3 727 182 37 37 0 chr3L 18631949 18631976 -5911581 + (TAAAAA)n Simple_repeat Simple_repeat 3 30 0 3 727 228 276 0 0 chr3L 18633900 18633976 -5909581 + CT-rich Low_complexity Low_complexity 2 77 0 3 727 27 62 0 0 chr3L 18634308 18634356 -5909201 + AT_rich Low_complexity Low_complexity 1 48 0 3 727 204 312 0 0 chr3L 18634943 18635039 -5908518 + A-rich Low_complexity Low_complexity 1 96 0 3 727 25 31 0 0 chr3L 18636429 18636461 -5907096 + AT_rich Low_complexity Low_complexity 1 32 0 3 727 24 0 0 0 chr3L 18638612 18638636 -5904921 + AT_rich Low_complexity Low_complexity 1 24 0 3 727 24 96 0 0 chr3L 18639944 18640017 -5903540 + AT_rich Low_complexity Low_complexity 1 73 0 3 727 27 62 0 0 chr3L 18640929 18640977 -5902580 + AT_rich Low_complexity Low_complexity 1 48 0 3 727 27 0 0 0 chr3L 18641099 18641126 -5902431 + AT_rich Low_complexity Low_complexity 1 27 0 3 727 231 36 0 0 chr3L 18643692 18643720 -5899837 + (CAT)n Simple_repeat Simple_repeat 3 30 0 3 727 31 26 0 0 chr3L 18645957 18645995 -5897562 + AT_rich Low_complexity Low_complexity 1 38 0 3 727 25 51 0 0 chr3L 18646125 18646164 -5897393 + AT_rich Low_complexity Low_complexity 1 39 0 3 727 25 31 0 0 chr3L 18646458 18646490 -5897067 + AT_rich Low_complexity Low_complexity 1 32 0 3 727 225 0 0 0 chr3L 18649535 18649560 -5893997 + (A)n Simple_repeat Simple_repeat 1 25 0 3 727 31 26 0 0 chr3L 18654401 18654439 -5889118 + AT_rich Low_complexity Low_complexity 1 38 0 3 727 235 179 9 95 chr3L 18654649 18654754 -5888803 + ROO_I LTR Pao 641 736 -7520 3 727 490 160 0 23 chr3L 18658820 18658948 -5884609 + (CAG)n Simple_repeat Simple_repeat 1 125 0 3 727 233 122 0 58 chr3L 18659125 18659177 -5884380 + (CAA)n Simple_repeat Simple_repeat 1 49 0 3 727 34 0 0 0 chr3L 18660712 18660746 -5882811 + AT_rich Low_complexity Low_complexity 1 34 0 3 727 273 128 0 0 chr3L 18662971 18663018 -5880539 + (CTG)n Simple_repeat Simple_repeat 1 47 0 3 727 218 191 0 0 chr3L 18663212 18663259 -5880298 + (CTG)n Simple_repeat Simple_repeat 3 49 0 3 727 21 0 0 0 chr3L 18667205 18667226 -5876331 + AT_rich Low_complexity Low_complexity 1 21 0 3 727 25 31 0 0 chr3L 18668721 18668753 -5874804 + AT_rich Low_complexity Low_complexity 1 32 0 3 727 33 73 0 0 chr3L 18675035 18675103 -5868454 + AT_rich Low_complexity Low_complexity 1 68 0 3 727 24 0 0 0 chr3L 18678838 18678862 -5864695 + AT_rich Low_complexity Low_complexity 1 24 0 3 727 49 32 0 0 chr3L 18683805 18683868 -5859689 + AT_rich Low_complexity Low_complexity 1 63 0 3 727 204 97 0 0 chr3L 18684672 18684703 -5858854 + (A)n Simple_repeat Simple_repeat 1 31 0 3 727 180 77 0 0 chr3L 18685912 18685938 -5857619 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 727 21 36 0 0 chr3L 18691125 18691153 -5852404 + AT_rich Low_complexity Low_complexity 1 28 0 3 727 28 0 0 0 chr3L 18692462 18692490 -5851067 + AT_rich Low_complexity Low_complexity 1 28 0 3 727 26 30 0 0 chr3L 18692553 18692586 -5850971 + AT_rich Low_complexity Low_complexity 1 33 0 3 727 28 29 0 0 chr3L 18693421 18693456 -5850101 + AT_rich Low_complexity Low_complexity 1 35 0 3 727 26 50 0 0 chr3L 18695784 18695824 -5847733 + AT_rich Low_complexity Low_complexity 1 40 0 3 727 324 169 37 49 chr3L 18695842 18695923 -5847634 + DNAREP1_DM LINE Penelope 13 92 -502 3 727 255 227 0 0 chr3L 18697576 18697642 -5845915 + (TG)n Simple_repeat Simple_repeat 1 66 0 3 727 25 0 0 0 chr3L 18697944 18697969 -5845588 + AT_rich Low_complexity Low_complexity 1 25 0 3 727 3872 0 0 2 chr3L 18703913 18704338 -5839219 - Stalker2_LTR LTR Gypsy 0 424 1 3 727 41072 19 6 3 chr3L 18704338 18709588 -5833969 - Stalker2_I LTR Gypsy 0 6530 1574 3 727 14104 4 2 4 chr3L 18709787 18711383 -5832174 - Stalker2_I LTR Gypsy -5810 1592 1 3 727 3872 0 0 2 chr3L 18711383 18711808 -5831749 - Stalker2_LTR LTR Gypsy 0 424 1 3 727 295 273 20 0 chr3L 18712643 18712742 -5830815 + (ACTG)n Simple_repeat Simple_repeat 3 103 0 3 727 31 58 0 0 chr3L 18720003 18720055 -5823502 + AT_rich Low_complexity Low_complexity 1 52 0 3 727 30 0 0 0 chr3L 18720895 18720925 -5822632 + AT_rich Low_complexity Low_complexity 1 30 0 3 727 31 26 0 0 chr3L 18722844 18722882 -5820675 + AT_rich Low_complexity Low_complexity 1 38 0 3 727 33 25 0 0 chr3L 18724223 18724263 -5819294 + AT_rich Low_complexity Low_complexity 1 40 0 3 727 183 42 0 0 chr3L 18725179 18725203 -5818354 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3 727 21 0 0 0 chr3L 18725290 18725311 -5818246 + AT_rich Low_complexity Low_complexity 1 21 0 3 727 28 0 0 0 chr3L 18727460 18727488 -5816069 + AT_rich Low_complexity Low_complexity 1 28 0 3 727 186 103 0 0 chr3L 18728842 18728871 -5814686 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 727 29 0 0 0 chr3L 18729222 18729251 -5814306 + AT_rich Low_complexity Low_complexity 1 29 0 3 727 23 0 0 0 chr3L 18730729 18730752 -5812805 + AT_rich Low_complexity Low_complexity 1 23 0 3 727 25 0 0 0 chr3L 18730773 18730798 -5812759 + AT_rich Low_complexity Low_complexity 1 25 0 3 727 227 79 0 26 chr3L 18731132 18731171 -5812386 + (TA)n Simple_repeat Simple_repeat 2 39 0 3 727 209 196 0 42 chr3L 18731334 18731382 -5812175 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 3 727 21 36 0 0 chr3L 18733335 18733363 -5810194 + AT_rich Low_complexity Low_complexity 1 28 0 3 727 22 0 0 0 chr3L 18733424 18733446 -5810111 + AT_rich Low_complexity Low_complexity 1 22 0 3 727 242 73 24 0 chr3L 18733747 18733788 -5809769 + (CA)n Simple_repeat Simple_repeat 2 43 0 3 727 221 229 57 0 chr3L 18735706 18735776 -5807781 + T-rich Low_complexity Low_complexity 3 76 0 3 727 1613 96 42 31 chr3L 18735994 18736283 -5807274 - DNAREP1_DM LINE Penelope -302 292 1 3 727 34 79 0 0 chr3L 18736489 18736565 -5806992 + AT_rich Low_complexity Low_complexity 1 76 0 3 727 299 47 61 30 chr3L 18736644 18736710 -5806847 + (TATAA)n Simple_repeat Simple_repeat 5 72 0 3 727 306 125 12 12 chr3L 18739437 18739518 -5804039 + ROO_I LTR Pao 640 720 -7536 3 728 31 0 0 0 chr3L 18746544 18746575 -5796982 + AT_rich Low_complexity Low_complexity 1 31 0 3 728 244 208 0 0 chr3L 18747024 18747077 -5796480 + (TCTCTG)n Simple_repeat Simple_repeat 2 54 0 3 728 23 33 0 0 chr3L 18748032 18748062 -5795495 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 228 216 0 0 chr3L 18748396 18748447 -5795110 + (CTG)n Simple_repeat Simple_repeat 3 53 0 3 728 314 61 20 0 chr3L 18751391 18751440 -5792117 + (TAA)n Simple_repeat Simple_repeat 1 50 0 3 728 261 188 36 36 chr3L 18752202 18752285 -5791272 + (CGAAA)n Simple_repeat Simple_repeat 3 85 0 3 728 207 245 0 0 chr3L 18752579 18752628 -5790929 + (CCG)n Simple_repeat Simple_repeat 1 49 0 3 728 27 73 0 0 chr3L 18752893 18752948 -5790609 + AT_rich Low_complexity Low_complexity 1 55 0 3 728 24 32 0 0 chr3L 18753026 18753057 -5790500 + AT_rich Low_complexity Low_complexity 1 31 0 3 728 202 286 0 0 chr3L 18754021 18754077 -5789480 + (TATG)n Simple_repeat Simple_repeat 3 58 0 3 728 201 74 0 0 chr3L 18754092 18754119 -5789438 + (TATG)n Simple_repeat Simple_repeat 1 27 0 3 728 32 26 0 0 chr3L 18754550 18754589 -5788968 + AT_rich Low_complexity Low_complexity 1 39 0 3 728 21 0 0 0 chr3L 18756133 18756154 -5787403 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 233 239 0 40 chr3L 18756852 18756926 -5786631 + (CCG)n Simple_repeat Simple_repeat 3 73 0 3 728 352 244 0 17 chr3L 18757018 18757135 -5786422 - ROO_I LTR Pao -7505 751 637 3 728 293 198 31 0 chr3L 18757271 18757367 -5786190 - ROO_I LTR Pao -7518 738 640 3 728 200 242 48 0 chr3L 18758092 18758154 -5785403 + T-rich Low_complexity Low_complexity 4 68 0 3 728 25 0 0 0 chr3L 18758760 18758785 -5784772 + AT_rich Low_complexity Low_complexity 1 25 0 3 728 189 121 0 0 chr3L 18759038 18759071 -5784486 + (TC)n Simple_repeat Simple_repeat 2 34 0 3 728 207 0 0 0 chr3L 18759861 18759884 -5783673 + (T)n Simple_repeat Simple_repeat 1 23 0 3 728 31 0 0 0 chr3L 18760161 18760192 -5783365 + AT_rich Low_complexity Low_complexity 1 31 0 3 728 24 32 0 0 chr3L 18760844 18760875 -5782682 + AT_rich Low_complexity Low_complexity 1 31 0 3 728 21 57 0 0 chr3L 18761634 18761669 -5781888 + AT_rich Low_complexity Low_complexity 1 35 0 3 728 201 328 0 0 chr3L 18762245 18762306 -5781251 + (TATATG)n Simple_repeat Simple_repeat 5 65 0 3 728 256 138 15 15 chr3L 18763027 18763093 -5780464 + (ACTG)n Simple_repeat Simple_repeat 3 68 0 3 728 28 0 0 0 chr3L 18763928 18763956 -5779601 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 222 213 0 0 chr3L 18764831 18764878 -5778679 + (TG)n Simple_repeat Simple_repeat 1 47 0 3 728 197 146 21 0 chr3L 18765218 18765266 -5778291 + (TATG)n Simple_repeat Simple_repeat 4 52 0 3 728 3931 0 0 0 chr3L 18765563 18765991 -5777566 - ROO_LTR LTR Pao 0 428 1 3 728 7185 0 1 0 chr3L 18765991 18766811 -5776746 - ROO_I LTR Pao 0 8256 7436 3 728 60931 0 16 3 chr3L 18766806 18773758 -5769799 - ROO_I LTR Pao -1220 7036 1 3 728 3917 2 0 0 chr3L 18773758 18774186 -5769371 - ROO_LTR LTR Pao 0 428 1 3 728 181 221 14 14 chr3L 18774821 18774890 -5768667 + (CAA)n Simple_repeat Simple_repeat 1 69 0 3 728 212 154 0 19 chr3L 18774993 18775046 -5768511 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 728 208 274 0 0 chr3L 18775083 18775134 -5768423 + (CCG)n Simple_repeat Simple_repeat 3 53 0 3 728 24 32 0 0 chr3L 18775761 18775792 -5767765 + AT_rich Low_complexity Low_complexity 1 31 0 3 728 240 35 0 0 chr3L 18775881 18775910 -5767647 + (T)n Simple_repeat Simple_repeat 1 29 0 3 728 437 0 0 19 chr3L 18777527 18777581 -5765976 + (TAA)n Simple_repeat Simple_repeat 2 54 0 3 728 304 233 44 0 chr3L 18777848 18777938 -5765619 + DNAREP1_DM LINE Penelope 501 594 0 3 728 26 30 0 0 chr3L 18780602 18780635 -5762922 + AT_rich Low_complexity Low_complexity 1 33 0 3 728 356 153 0 12 chr3L 18781048 18781134 -5762423 + GA-rich Low_complexity Low_complexity 2 86 0 3 728 31 58 0 0 chr3L 18782472 18782524 -5761033 + AT_rich Low_complexity Low_complexity 1 52 0 3 728 21 0 0 0 chr3L 18783098 18783119 -5760438 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 38 81 0 0 chr3L 18783429 18783516 -5760041 + AT_rich Low_complexity Low_complexity 1 87 0 3 728 21 36 0 0 chr3L 18783901 18783929 -5759628 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 230 56 28 0 chr3L 18786078 18786114 -5757443 + (TC)n Simple_repeat Simple_repeat 2 38 0 3 728 195 129 0 0 chr3L 18786443 18786474 -5757083 + (CAA)n Simple_repeat Simple_repeat 2 32 0 3 728 185 35 0 65 chr3L 18787291 18787322 -5756235 + (TTTAG)n Simple_repeat Simple_repeat 3 31 0 3 728 28 79 0 0 chr3L 18787667 18787730 -5755827 + AT_rich Low_complexity Low_complexity 1 63 0 3 728 28 99 0 0 chr3L 18790287 18790378 -5753179 + AT_rich Low_complexity Low_complexity 1 91 0 3 728 216 0 0 0 chr3L 18790734 18790758 -5752799 + (CTG)n Simple_repeat Simple_repeat 3 26 0 3 728 235 214 0 0 chr3L 18790928 18790984 -5752573 + (CCCGAA)n Simple_repeat Simple_repeat 3 58 0 3 728 276 130 0 0 chr3L 18791324 18791370 -5752187 + (TTG)n Simple_repeat Simple_repeat 1 46 0 3 728 270 272 0 12 chr3L 18791537 18791619 -5751938 + (CTG)n Simple_repeat Simple_repeat 3 83 0 3 728 210 176 0 0 chr3L 18791697 18791748 -5751809 + (CTG)n Simple_repeat Simple_repeat 3 53 0 3 728 21 57 0 0 chr3L 18791829 18791864 -5751693 + AT_rich Low_complexity Low_complexity 1 35 0 3 728 27 96 0 0 chr3L 18792440 18792523 -5751034 + AT_rich Low_complexity Low_complexity 1 83 0 3 728 23 33 0 0 chr3L 18792804 18792834 -5750723 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 23 33 0 0 chr3L 18792932 18792962 -5750595 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 223 250 12 12 chr3L 18793411 18793492 -5750065 + (TCTCTG)n Simple_repeat Simple_repeat 6 86 0 3 728 207 211 0 0 chr3L 18793572 18793610 -5749947 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3 728 188 100 0 24 chr3L 18793721 18793762 -5749795 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 3 728 22 80 0 0 chr3L 18795245 18795295 -5748262 + AT_rich Low_complexity Low_complexity 1 50 0 3 728 22 35 0 0 chr3L 18795310 18795339 -5748218 + AT_rich Low_complexity Low_complexity 1 29 0 3 728 248 185 0 36 chr3L 18798726 18798810 -5744747 + CT-rich Low_complexity Low_complexity 2 82 0 3 728 221 113 0 54 chr3L 18802297 18802353 -5741204 + (CTG)n Simple_repeat Simple_repeat 1 53 0 3 728 195 42 0 0 chr3L 18805430 18805454 -5738103 + (CATA)n Simple_repeat Simple_repeat 1 24 0 3 728 214 0 53 53 chr3L 18806650 18806688 -5736869 + (TATAA)n Simple_repeat Simple_repeat 1 38 0 3 728 207 0 0 0 chr3L 18810495 18810518 -5733039 + (CA)n Simple_repeat Simple_repeat 1 23 0 3 728 204 40 0 0 chr3L 18812730 18812755 -5730802 + (TTG)n Simple_repeat Simple_repeat 2 26 0 3 728 195 150 16 32 chr3L 18813431 18813493 -5730064 + (TTG)n Simple_repeat Simple_repeat 1 61 0 3 728 212 179 0 0 chr3L 18816341 18816380 -5727177 + T-rich Low_complexity Low_complexity 1 39 0 3 728 189 94 0 0 chr3L 18821073 18821105 -5722452 + (CCA)n Simple_repeat Simple_repeat 2 33 0 3 728 23 0 0 0 chr3L 18821745 18821768 -5721789 + AT_rich Low_complexity Low_complexity 1 23 0 3 728 43 20 0 0 chr3L 18823317 18823367 -5720190 + AT_rich Low_complexity Low_complexity 1 50 0 3 728 21 36 0 0 chr3L 18824364 18824392 -5719165 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 8993 16 4 3 chr3L 18826936 18828040 -5715517 - PROTOP_A DNA P 0 1105 1 3 728 21 0 0 0 chr3L 18829495 18829516 -5714041 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 36 0 0 0 chr3L 18830614 18830650 -5712907 + AT_rich Low_complexity Low_complexity 1 36 0 3 728 22 56 0 0 chr3L 18832815 18832851 -5710706 + AT_rich Low_complexity Low_complexity 1 36 0 3 728 21 0 0 0 chr3L 18836432 18836453 -5707104 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 21 36 0 0 chr3L 18839272 18839300 -5704257 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 240 59 0 0 chr3L 18839408 18839442 -5704115 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 728 30 0 0 0 chr3L 18839674 18839704 -5703853 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 926 58 124 0 chr3L 18840952 18841089 -5702468 + DNAREP1_DM LINE Penelope 412 565 -29 3 728 28 0 0 0 chr3L 18841492 18841520 -5702037 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 21 0 0 0 chr3L 18841771 18841792 -5701765 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 400 249 184 26 chr3L 18841792 18842097 -5701460 + DNAREP1_DM LINE Penelope 40 392 -202 3 728 25 0 0 0 chr3L 18842135 18842160 -5701397 + AT_rich Low_complexity Low_complexity 1 25 0 3 728 23 0 0 0 chr3L 18844470 18844493 -5699064 + AT_rich Low_complexity Low_complexity 1 23 0 3 728 42 0 0 0 chr3L 18844756 18844798 -5698759 + AT_rich Low_complexity Low_complexity 1 42 0 3 728 309 68 0 0 chr3L 18845407 18845451 -5698106 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 728 21 0 0 0 chr3L 18845948 18845969 -5697588 + AT_rich Low_complexity Low_complexity 1 21 0 3 728 21 36 0 0 chr3L 18846163 18846191 -5697366 + AT_rich Low_complexity Low_complexity 1 28 0 3 728 208 146 17 68 chr3L 18846412 18846471 -5697086 + A-rich Low_complexity Low_complexity 5 60 0 3 728 25 0 0 0 chr3L 18847270 18847295 -5696262 + AT_rich Low_complexity Low_complexity 1 25 0 3 728 32 43 0 0 chr3L 18847353 18847399 -5696158 + AT_rich Low_complexity Low_complexity 1 46 0 3 728 198 0 0 0 chr3L 18847615 18847637 -5695920 + (CAGAA)n Simple_repeat Simple_repeat 4 25 0 3 728 227 210 19 48 chr3L 18848903 18849008 -5694549 + A-rich Low_complexity Low_complexity 2 103 0 3 728 25 51 0 0 chr3L 18851550 18851589 -5691968 + AT_rich Low_complexity Low_complexity 1 39 0 3 728 24 91 0 0 chr3L 18854203 18854269 -5689288 + AT_rich Low_complexity Low_complexity 1 66 0 3 728 25 65 0 0 chr3L 18854290 18854336 -5689221 + AT_rich Low_complexity Low_complexity 1 46 0 3 728 28 48 0 0 chr3L 18854474 18854516 -5689041 + AT_rich Low_complexity Low_complexity 1 42 0 3 728 23 33 0 0 chr3L 18856928 18856958 -5686599 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 30 0 0 0 chr3L 18860690 18860720 -5682837 + AT_rich Low_complexity Low_complexity 1 30 0 3 728 23 54 0 0 chr3L 18865735 18865772 -5677785 + AT_rich Low_complexity Low_complexity 1 37 0 3 728 22 0 0 0 chr3L 18865802 18865824 -5677733 + AT_rich Low_complexity Low_complexity 1 22 0 3 729 26 0 0 0 chr3L 18874552 18874578 -5668979 + AT_rich Low_complexity Low_complexity 1 26 0 3 729 26 0 0 0 chr3L 18876799 18876825 -5666732 + AT_rich Low_complexity Low_complexity 1 26 0 3 729 22 56 0 0 chr3L 18877171 18877207 -5666350 + AT_rich Low_complexity Low_complexity 1 36 0 3 729 37 39 0 0 chr3L 18878487 18878538 -5665019 + AT_rich Low_complexity Low_complexity 1 51 0 3 729 27 0 0 0 chr3L 18884457 18884484 -5659073 + AT_rich Low_complexity Low_complexity 1 27 0 3 729 25 65 0 0 chr3L 18886211 18886257 -5657300 + AT_rich Low_complexity Low_complexity 1 46 0 3 729 22 70 0 0 chr3L 18887388 18887431 -5656126 + AT_rich Low_complexity Low_complexity 1 43 0 3 729 26 0 0 0 chr3L 18888033 18888059 -5655498 + AT_rich Low_complexity Low_complexity 1 26 0 3 729 23 33 0 0 chr3L 18888972 18889002 -5654555 + AT_rich Low_complexity Low_complexity 1 30 0 3 729 32 26 0 0 chr3L 18889911 18889950 -5653607 + AT_rich Low_complexity Low_complexity 1 39 0 3 729 40 49 0 0 chr3L 18890134 18890195 -5653362 + AT_rich Low_complexity Low_complexity 1 61 0 3 729 32 26 0 0 chr3L 18890355 18890394 -5653163 + AT_rich Low_complexity Low_complexity 1 39 0 3 729 25 0 0 0 chr3L 18891779 18891804 -5651753 + AT_rich Low_complexity Low_complexity 1 25 0 3 729 23 33 0 0 chr3L 18896058 18896088 -5647469 + AT_rich Low_complexity Low_complexity 1 30 0 3 729 23 33 0 0 chr3L 18898435 18898465 -5645092 + AT_rich Low_complexity Low_complexity 1 30 0 3 729 22 70 0 0 chr3L 18902029 18902072 -5641485 + AT_rich Low_complexity Low_complexity 1 43 0 3 729 29 60 0 0 chr3L 18904884 18904934 -5638623 + AT_rich Low_complexity Low_complexity 1 50 0 3 729 35 71 0 0 chr3L 18905840 18905910 -5637647 + AT_rich Low_complexity Low_complexity 1 70 0 3 729 29 60 0 0 chr3L 18908275 18908325 -5635232 + AT_rich Low_complexity Low_complexity 1 50 0 3 729 286 225 180 0 chr3L 18910963 18911074 -5632483 - DNAREP1_DM LINE Penelope -100 494 364 3 729 29 28 0 0 chr3L 18914976 18915012 -5628545 + AT_rich Low_complexity Low_complexity 1 36 0 3 729 180 0 0 0 chr3L 18916517 18916537 -5627020 + (GA)n Simple_repeat Simple_repeat 2 21 0 3 729 195 129 0 0 chr3L 18917313 18917344 -5626213 + (TCG)n Simple_repeat Simple_repeat 3 33 0 3 729 26 30 0 0 chr3L 18917723 18917756 -5625801 + AT_rich Low_complexity Low_complexity 1 33 0 3 729 23 54 0 0 chr3L 18920536 18920573 -5622984 + AT_rich Low_complexity Low_complexity 1 37 0 3 729 213 64 62 21 chr3L 18924195 18924243 -5619314 + (TAAAA)n Simple_repeat Simple_repeat 1 50 0 3 729 236 132 0 0 chr3L 18925272 18925310 -5618247 - DNAREP1_DM LINE Penelope -536 58 21 3 729 213 39 0 0 chr3L 18925691 18925717 -5617840 + (CTA)n Simple_repeat Simple_repeat 2 27 0 3 729 307 216 50 20 chr3L 18926498 18926597 -5616960 - DNAREP1_DM LINE Penelope -453 141 40 3 729 21 0 0 0 chr3L 18927296 18927317 -5616240 + AT_rich Low_complexity Low_complexity 1 21 0 3 729 25 0 0 0 chr3L 18928815 18928840 -5614717 + AT_rich Low_complexity Low_complexity 1 25 0 3 729 22 0 0 0 chr3L 18931966 18931988 -5611569 + AT_rich Low_complexity Low_complexity 1 22 0 3 729 180 0 0 0 chr3L 18933056 18933076 -5610481 + (A)n Simple_repeat Simple_repeat 1 20 0 3 729 246 105 0 0 chr3L 18933542 18933580 -5609977 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 729 25 31 0 0 chr3L 18937566 18937598 -5605959 + AT_rich Low_complexity Low_complexity 1 32 0 3 729 180 125 0 0 chr3L 18940272 18940304 -5603253 + (TC)n Simple_repeat Simple_repeat 1 32 0 3 729 47 67 0 0 chr3L 18941873 18941962 -5601595 + AT_rich Low_complexity Low_complexity 1 89 0 3 729 23 54 0 0 chr3L 18943043 18943080 -5600477 + AT_rich Low_complexity Low_complexity 1 37 0 3 729 21 57 0 0 chr3L 18944958 18944993 -5598564 + AT_rich Low_complexity Low_complexity 1 35 0 3 729 23 0 0 0 chr3L 18946267 18946290 -5597267 + AT_rich Low_complexity Low_complexity 1 23 0 3 729 30 59 0 0 chr3L 18946991 18947042 -5596515 + AT_rich Low_complexity Low_complexity 1 51 0 3 729 25 0 0 0 chr3L 18949517 18949542 -5594015 + AT_rich Low_complexity Low_complexity 1 25 0 3 729 21 82 0 0 chr3L 18952718 18952767 -5590790 + AT_rich Low_complexity Low_complexity 1 49 0 3 729 28 0 0 0 chr3L 18955215 18955243 -5588314 + AT_rich Low_complexity Low_complexity 1 28 0 3 729 22 56 0 0 chr3L 18955933 18955969 -5587588 + AT_rich Low_complexity Low_complexity 1 36 0 3 729 27 49 0 0 chr3L 18956057 18956098 -5587459 + AT_rich Low_complexity Low_complexity 1 41 0 3 729 210 246 0 55 chr3L 18956744 18956817 -5586740 + (TTTG)n Simple_repeat Simple_repeat 1 69 0 3 729 24 0 0 0 chr3L 18962123 18962147 -5581410 + AT_rich Low_complexity Low_complexity 1 24 0 3 729 27 62 0 0 chr3L 18964440 18964488 -5579069 + AT_rich Low_complexity Low_complexity 1 48 0 3 729 207 88 0 0 chr3L 18978599 18978633 -5564924 + (ATTG)n Simple_repeat Simple_repeat 1 34 0 3 729 22 0 0 0 chr3L 18982421 18982443 -5561114 + AT_rich Low_complexity Low_complexity 1 22 0 3 729 23 0 0 0 chr3L 18986434 18986457 -5557100 + AT_rich Low_complexity Low_complexity 1 23 0 3 729 22 35 0 0 chr3L 18986697 18986726 -5556831 + AT_rich Low_complexity Low_complexity 1 29 0 3 729 26 0 0 0 chr3L 18994521 18994547 -5549010 + AT_rich Low_complexity Low_complexity 1 26 0 3 729 412 174 19 39 chr3L 18994847 18994951 -5548606 - PENELOPE LINE Penelope -111 4050 3964 3 729 376 219 50 58 chr3L 18994947 18995068 -5548489 + DNAREP1_DM LINE Penelope 351 470 -124 3 729 189 0 0 0 chr3L 18997539 18997560 -5545997 + (TATG)n Simple_repeat Simple_repeat 2 22 0 3 729 260 256 0 0 chr3L 18998402 18998480 -5545077 + (CTG)n Simple_repeat Simple_repeat 2 79 0 3 729 215 103 26 0 chr3L 18998525 18998564 -5544993 + (CTG)n Simple_repeat Simple_repeat 2 41 0 3 729 180 77 0 0 chr3L 18999023 18999049 -5544508 + (TTG)n Simple_repeat Simple_repeat 3 28 0 3 729 222 136 0 0 chr3L 18999748 18999792 -5543765 + (CTG)n Simple_repeat Simple_repeat 3 46 0 3 729 28 0 0 0 chr3L 19000071 19000099 -5543458 + AT_rich Low_complexity Low_complexity 1 28 0 3 729 2183 0 0 26 chr3L 19001999 19002268 -5541289 + LINEJ1_DM LINE Jockey 4759 5020 0 3 730 24 32 0 0 chr3L 19008501 19008532 -5535025 + AT_rich Low_complexity Low_complexity 1 31 0 3 730 21 0 0 0 chr3L 19008670 19008691 -5534866 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 180 167 0 0 chr3L 19008828 19008876 -5534681 + T-rich Low_complexity Low_complexity 1 48 0 3 730 270 95 0 0 chr3L 19010099 19010141 -5533416 + (TTG)n Simple_repeat Simple_repeat 1 42 0 3 730 291 28 0 0 chr3L 19012735 19012771 -5530786 + (TCC)n Simple_repeat Simple_repeat 1 36 0 3 730 26 82 0 0 chr3L 19013280 19013341 -5530216 + AT_rich Low_complexity Low_complexity 1 61 0 3 730 218 297 0 0 chr3L 19017345 19017409 -5526148 + A-rich Low_complexity Low_complexity 1 64 0 3 730 225 0 0 0 chr3L 19019951 19019976 -5523581 + (C)n Simple_repeat Simple_repeat 1 25 0 3 730 204 67 0 0 chr3L 19020001 19020031 -5523526 + (T)n Simple_repeat Simple_repeat 1 30 0 3 730 224 261 14 0 chr3L 19023393 19023462 -5520095 + (TCCG)n Simple_repeat Simple_repeat 4 73 0 3 730 25 0 0 0 chr3L 19025495 19025520 -5518037 + AT_rich Low_complexity Low_complexity 1 25 0 3 730 189 0 0 0 chr3L 19026093 19026114 -5517443 + (TG)n Simple_repeat Simple_repeat 1 21 0 3 730 34 42 0 0 chr3L 19026358 19026406 -5517151 + AT_rich Low_complexity Low_complexity 1 48 0 3 730 231 210 0 16 chr3L 19028444 19028507 -5515050 + C-rich Low_complexity Low_complexity 5 66 0 3 730 195 42 0 0 chr3L 19031797 19031821 -5511736 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3 730 192 77 0 0 chr3L 19031827 19031853 -5511704 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 730 195 42 0 0 chr3L 19033205 19033229 -5510328 + (CCGAA)n Simple_repeat Simple_repeat 4 27 0 3 730 279 54 0 0 chr3L 19034163 19034200 -5509357 + (TTCGG)n Simple_repeat Simple_repeat 4 40 0 3 730 201 211 0 0 chr3L 19035257 19035314 -5508243 + (TCCG)n Simple_repeat Simple_repeat 3 59 0 3 730 40 21 0 0 chr3L 19038794 19038841 -5504716 + AT_rich Low_complexity Low_complexity 1 47 0 3 730 22 56 0 0 chr3L 19040783 19040819 -5502738 + AT_rich Low_complexity Low_complexity 1 36 0 3 730 21 0 0 0 chr3L 19042855 19042876 -5500681 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 21 0 0 0 chr3L 19045989 19046010 -5497547 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 47 19 0 0 chr3L 19047035 19047089 -5496468 + AT_rich Low_complexity Low_complexity 1 54 0 3 730 23 33 0 0 chr3L 19047764 19047794 -5495763 + AT_rich Low_complexity Low_complexity 1 30 0 3 730 204 97 0 0 chr3L 19048152 19048183 -5495374 + (TCC)n Simple_repeat Simple_repeat 3 33 0 3 730 25 51 0 0 chr3L 19050096 19050135 -5493422 + AT_rich Low_complexity Low_complexity 1 39 0 3 730 237 132 0 0 chr3L 19051081 19051119 -5492438 + (CGGA)n Simple_repeat Simple_repeat 4 41 0 3 730 216 0 0 0 chr3L 19052025 19052049 -5491508 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 730 22 70 0 0 chr3L 19052611 19052654 -5490903 + AT_rich Low_complexity Low_complexity 1 43 0 3 730 31 0 0 0 chr3L 19061462 19061493 -5482064 + AT_rich Low_complexity Low_complexity 1 31 0 3 730 200 189 0 0 chr3L 19062874 19062911 -5480646 + (TGG)n Simple_repeat Simple_repeat 3 39 0 3 730 27 49 0 0 chr3L 19064201 19064242 -5479315 + AT_rich Low_complexity Low_complexity 1 41 0 3 730 21 0 0 0 chr3L 19064542 19064563 -5478994 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 237 33 0 0 chr3L 19065339 19065369 -5478188 + (TC)n Simple_repeat Simple_repeat 1 30 0 3 730 180 143 0 0 chr3L 19065514 19065556 -5478001 + (CA)n Simple_repeat Simple_repeat 1 42 0 3 730 226 304 14 0 chr3L 19066567 19066636 -5476921 + (CATA)n Simple_repeat Simple_repeat 2 71 0 3 730 183 42 0 0 chr3L 19068745 19068769 -5474788 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 3 730 195 114 0 0 chr3L 19068939 19068974 -5474583 + (TAA)n Simple_repeat Simple_repeat 1 35 0 3 730 23 92 0 0 chr3L 19071738 19071803 -5471754 + AT_rich Low_complexity Low_complexity 1 65 0 3 730 34 55 0 0 chr3L 19079966 19080021 -5463536 + AT_rich Low_complexity Low_complexity 1 55 0 3 730 33 56 0 0 chr3L 19081154 19081208 -5462349 + AT_rich Low_complexity Low_complexity 1 54 0 3 730 22 35 0 0 chr3L 19082585 19082614 -5460943 + AT_rich Low_complexity Low_complexity 1 29 0 3 730 24 0 0 0 chr3L 19083432 19083456 -5460101 + AT_rich Low_complexity Low_complexity 1 24 0 3 730 250 211 0 17 chr3L 19084829 19084887 -5458670 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 730 41 48 0 0 chr3L 19085440 19085502 -5458055 + AT_rich Low_complexity Low_complexity 1 62 0 3 730 211 303 0 0 chr3L 19086074 19086150 -5457407 + GA-rich Low_complexity Low_complexity 2 77 0 3 730 22 70 0 0 chr3L 19086451 19086494 -5457063 + AT_rich Low_complexity Low_complexity 1 43 0 3 730 21 0 0 0 chr3L 19087808 19087829 -5455728 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 28 48 0 0 chr3L 19089430 19089472 -5454085 + AT_rich Low_complexity Low_complexity 1 42 0 3 730 31 58 0 0 chr3L 19098028 19098080 -5445477 + AT_rich Low_complexity Low_complexity 1 52 0 3 730 354 257 19 19 chr3L 19099110 19099265 -5444292 + (TA)n Simple_repeat Simple_repeat 2 156 0 3 730 23 0 0 0 chr3L 19099478 19099501 -5444056 + AT_rich Low_complexity Low_complexity 1 23 0 3 730 34 42 0 0 chr3L 19099874 19099922 -5443635 + AT_rich Low_complexity Low_complexity 1 48 0 3 730 26 30 0 0 chr3L 19101803 19101836 -5441721 + AT_rich Low_complexity Low_complexity 1 33 0 3 730 281 76 0 81 chr3L 19102429 19102515 -5441042 + (CAAAC)n Simple_repeat Simple_repeat 2 80 0 3 730 251 93 0 23 chr3L 19102556 19102600 -5440957 + (TGG)n Simple_repeat Simple_repeat 2 44 0 3 730 188 35 35 0 chr3L 19103916 19103945 -5439612 + (TAA)n Simple_repeat Simple_repeat 2 31 0 3 730 22 0 0 0 chr3L 19105441 19105463 -5438094 + AT_rich Low_complexity Low_complexity 1 22 0 3 730 915 9 0 0 chr3L 19108802 19108912 -5434645 - BS LINE Jockey 0 5126 5017 3 730 3120 25 0 0 chr3L 19110197 19110553 -5433004 - MDG1_LTR LTR Gypsy 0 442 87 3 730 423 100 0 0 chr3L 19110553 19110623 -5432934 + (TTA)n Simple_repeat Simple_repeat 3 72 0 3 730 57359 6 16 2 chr3L 19110627 19117145 -5426412 - MDG1_I LTR Gypsy -98 6799 1 3 730 3120 25 0 0 chr3L 19117145 19117501 -5426056 - MDG1_LTR LTR Gypsy 0 442 87 3 730 423 100 0 0 chr3L 19117501 19117571 -5425986 + (TTA)n Simple_repeat Simple_repeat 3 72 0 3 730 27 0 0 0 chr3L 19119270 19119297 -5424260 + AT_rich Low_complexity Low_complexity 1 27 0 3 730 21 0 0 0 chr3L 19120262 19120283 -5423274 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 21 0 0 0 chr3L 19122990 19123011 -5420546 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 21 0 0 0 chr3L 19123224 19123245 -5420312 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 21 0 0 0 chr3L 19123301 19123322 -5420235 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 27 0 0 0 chr3L 19123831 19123858 -5419699 + AT_rich Low_complexity Low_complexity 1 27 0 3 730 21 0 0 0 chr3L 19125724 19125745 -5417812 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 24 53 0 0 chr3L 19131129 19131167 -5412390 + AT_rich Low_complexity Low_complexity 1 38 0 3 730 206 179 18 0 chr3L 19132060 19132116 -5411441 + T-rich Low_complexity Low_complexity 3 59 0 3 730 21 0 0 0 chr3L 19134378 19134399 -5409158 + AT_rich Low_complexity Low_complexity 1 21 0 3 730 27 0 0 0 chr3L 19135317 19135344 -5408213 + AT_rich Low_complexity Low_complexity 1 27 0 3 730 24 0 0 0 chr3L 19135414 19135438 -5408119 + AT_rich Low_complexity Low_complexity 1 24 0 3 731 216 308 0 32 chr3L 19138712 19138836 -5404721 + (CCG)n Simple_repeat Simple_repeat 1 120 0 3 731 222 150 0 0 chr3L 19146933 19146973 -5396584 + (CATA)n Simple_repeat Simple_repeat 4 43 0 3 731 205 195 0 0 chr3L 19147143 19147184 -5396373 + (CA)n Simple_repeat Simple_repeat 1 41 0 3 731 180 0 0 0 chr3L 19150802 19150822 -5392735 + (T)n Simple_repeat Simple_repeat 1 20 0 3 731 21 36 0 0 chr3L 19156216 19156244 -5387313 + AT_rich Low_complexity Low_complexity 1 28 0 3 731 183 42 0 0 chr3L 19156993 19157017 -5386540 + (CAACT)n Simple_repeat Simple_repeat 3 26 0 3 731 192 77 0 0 chr3L 19158909 19158935 -5384622 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 3 731 200 118 29 0 chr3L 19159497 19159531 -5384026 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 3 731 207 208 0 20 chr3L 19160643 19160692 -5382865 + (ACTG)n Simple_repeat Simple_repeat 1 48 0 3 731 43 35 0 0 chr3L 19161187 19161244 -5382313 + AT_rich Low_complexity Low_complexity 1 57 0 3 731 186 133 0 0 chr3L 19167560 19167590 -5375967 + (CGGA)n Simple_repeat Simple_repeat 4 33 0 3 731 206 176 20 0 chr3L 19168137 19168188 -5375369 + (TA)n Simple_repeat Simple_repeat 1 52 0 3 731 203 162 27 0 chr3L 19170348 19170385 -5373172 + (CGAAG)n Simple_repeat Simple_repeat 2 39 0 3 731 22 0 0 0 chr3L 19171909 19171931 -5371626 + AT_rich Low_complexity Low_complexity 1 22 0 3 731 25 0 0 0 chr3L 19172789 19172814 -5370743 + AT_rich Low_complexity Low_complexity 1 25 0 3 731 324 70 0 0 chr3L 19174189 19174232 -5369325 + (CAGTT)n Simple_repeat Simple_repeat 4 46 0 3 731 225 0 0 0 chr3L 19177335 19177360 -5366197 + (TG)n Simple_repeat Simple_repeat 1 25 0 3 731 24 0 0 0 chr3L 19180815 19180839 -5362718 + AT_rich Low_complexity Low_complexity 1 24 0 3 731 30 45 0 0 chr3L 19182077 19182121 -5361436 + AT_rich Low_complexity Low_complexity 1 44 0 3 731 37 39 0 0 chr3L 19182914 19182965 -5360592 + AT_rich Low_complexity Low_complexity 1 51 0 3 731 22 0 0 0 chr3L 19182992 19183014 -5360543 + AT_rich Low_complexity Low_complexity 1 22 0 3 731 27 0 0 0 chr3L 19187376 19187403 -5356154 + AT_rich Low_complexity Low_complexity 1 27 0 3 731 24 0 0 0 chr3L 19187409 19187433 -5356124 + AT_rich Low_complexity Low_complexity 1 24 0 3 731 21 0 0 0 chr3L 19190604 19190625 -5352932 + AT_rich Low_complexity Low_complexity 1 21 0 3 731 189 171 0 0 chr3L 19193535 19193570 -5349987 + CT-rich Low_complexity Low_complexity 3 37 0 3 731 30 69 0 0 chr3L 19194899 19194957 -5348600 + AT_rich Low_complexity Low_complexity 1 58 0 3 731 27 0 0 0 chr3L 19199990 19200017 -5343540 + AT_rich Low_complexity Low_complexity 1 27 0 3 731 247 177 0 46 chr3L 19200465 19200530 -5343027 + ROO_I LTR Pao 680 741 -7515 3 731 12166 1 0 0 chr3L 19201213 19202529 -5341028 - DOC LINE Jockey 0 4725 3410 3 731 21 0 0 0 chr3L 19203051 19203072 -5340485 + AT_rich Low_complexity Low_complexity 1 21 0 3 731 27 0 0 0 chr3L 19205165 19205192 -5338365 + AT_rich Low_complexity Low_complexity 1 27 0 3 731 213 314 0 0 chr3L 19207577 19207647 -5335910 + (TCTG)n Simple_repeat Simple_repeat 1 70 0 3 731 198 0 0 0 chr3L 19208396 19208418 -5335139 + (CAGTT)n Simple_repeat Simple_repeat 3 24 0 3 731 222 208 0 0 chr3L 19212366 19212419 -5331138 + (TA)n Simple_repeat Simple_repeat 2 54 0 3 731 315 0 0 0 chr3L 19212892 19212927 -5330630 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 3 731 204 40 0 0 chr3L 19213733 19213758 -5329799 + (GGAGA)n Simple_repeat Simple_repeat 4 28 0 3 731 276 53 0 0 chr3L 19214747 19214785 -5328772 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 731 26 30 0 0 chr3L 19216538 19216571 -5326986 + AT_rich Low_complexity Low_complexity 1 33 0 3 731 40 83 0 0 chr3L 19216638 19216734 -5326823 + AT_rich Low_complexity Low_complexity 1 96 0 3 731 205 186 0 0 chr3L 19217746 19217789 -5325768 + (CAAA)n Simple_repeat Simple_repeat 1 43 0 3 731 214 182 0 0 chr3L 19218048 19218092 -5325465 + T-rich Low_complexity Low_complexity 1 44 0 3 731 21 71 0 0 chr3L 19218373 19218415 -5325142 + AT_rich Low_complexity Low_complexity 1 42 0 3 731 219 236 0 0 chr3L 19221737 19221792 -5321765 + (TG)n Simple_repeat Simple_repeat 1 55 0 3 731 210 171 0 24 chr3L 19221930 19221972 -5321585 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 3 731 180 0 0 0 chr3L 19224199 19224219 -5319338 + (GAATG)n Simple_repeat Simple_repeat 3 22 0 3 731 203 162 0 0 chr3L 19228098 19228135 -5315422 + (CA)n Simple_repeat Simple_repeat 1 37 0 3 731 21 0 0 0 chr3L 19228896 19228917 -5314640 + AT_rich Low_complexity Low_complexity 1 21 0 3 731 227 29 57 0 chr3L 19229204 19229239 -5314318 + (TATAA)n Simple_repeat Simple_repeat 1 37 0 3 731 316 203 0 0 chr3L 19230497 19230556 -5313001 + DNAREP1_DM LINE Penelope 438 496 -98 3 731 27 0 0 0 chr3L 19231953 19231980 -5311577 + AT_rich Low_complexity Low_complexity 1 27 0 3 731 211 262 0 0 chr3L 19233042 19233103 -5310454 + (CTCA)n Simple_repeat Simple_repeat 2 62 0 3 731 26 0 0 0 chr3L 19233158 19233184 -5310373 + AT_rich Low_complexity Low_complexity 1 26 0 3 731 39 22 0 0 chr3L 19234331 19234377 -5309180 + AT_rich Low_complexity Low_complexity 1 46 0 3 731 199 146 0 35 chr3L 19239118 19239175 -5304382 + (TTGGGG)n Simple_repeat Simple_repeat 5 59 0 3 731 317 145 0 16 chr3L 19239431 19239494 -5304063 + (TA)n Simple_repeat Simple_repeat 2 63 0 3 731 27 49 0 0 chr3L 19245903 19245944 -5297613 + AT_rich Low_complexity Low_complexity 1 41 0 3 731 180 0 0 0 chr3L 19250799 19250819 -5292738 + (TA)n Simple_repeat Simple_repeat 1 20 0 3 731 33 87 0 23 chr3L 19254024 19254153 -5289404 + AT_rich Low_complexity Low_complexity 1 126 0 3 731 22 0 0 0 chr3L 19254272 19254294 -5289263 + AT_rich Low_complexity Low_complexity 1 22 0 3 731 22 70 0 0 chr3L 19254359 19254402 -5289155 + AT_rich Low_complexity Low_complexity 1 43 0 3 731 24 0 0 0 chr3L 19254765 19254789 -5288768 + AT_rich Low_complexity Low_complexity 1 24 0 3 731 29 60 0 0 chr3L 19257335 19257385 -5286172 + AT_rich Low_complexity Low_complexity 1 50 0 3 731 353 174 84 32 chr3L 19258563 19258658 -5284899 - DNAREP1_DM LINE Penelope 0 594 495 3 731 384 222 46 46 chr3L 19258688 19258839 -5284718 - DNAREP1_DM LINE Penelope -443 151 1 3 731 25 0 0 0 chr3L 19259518 19259543 -5284014 + AT_rich Low_complexity Low_complexity 1 25 0 3 731 23 54 0 0 chr3L 19261564 19261601 -5281956 + AT_rich Low_complexity Low_complexity 1 37 0 3 731 22 35 0 0 chr3L 19261662 19261691 -5281866 + AT_rich Low_complexity Low_complexity 1 29 0 3 731 31 26 0 0 chr3L 19263855 19263893 -5279664 + AT_rich Low_complexity Low_complexity 1 38 0 3 731 248 220 0 0 chr3L 19264049 19264099 -5279458 + DNAREP1_DM LINE Penelope 10 59 -535 3 732 32 0 0 0 chr3L 19268987 19269019 -5274538 + AT_rich Low_complexity Low_complexity 1 32 0 3 732 234 0 0 0 chr3L 19269082 19269108 -5274449 + (CA)n Simple_repeat Simple_repeat 1 26 0 3 732 21 0 0 0 chr3L 19269456 19269477 -5274080 + AT_rich Low_complexity Low_complexity 1 21 0 3 732 209 196 0 0 chr3L 19272362 19272408 -5271149 + (CTATA)n Simple_repeat Simple_repeat 5 50 0 3 732 29 28 0 0 chr3L 19275024 19275060 -5268497 + AT_rich Low_complexity Low_complexity 1 36 0 3 732 24 0 0 0 chr3L 19278995 19279019 -5264538 + AT_rich Low_complexity Low_complexity 1 24 0 3 732 206 135 0 26 chr3L 19281299 19281337 -5262220 + (TGGG)n Simple_repeat Simple_repeat 2 38 0 3 732 252 77 0 0 chr3L 19281740 19281779 -5261778 + (GGATG)n Simple_repeat Simple_repeat 2 40 0 3 732 24 67 0 0 chr3L 19282931 19282976 -5260581 + AT_rich Low_complexity Low_complexity 1 45 0 3 732 24 0 0 0 chr3L 19283381 19283405 -5260152 + AT_rich Low_complexity Low_complexity 1 24 0 3 732 23 33 0 0 chr3L 19284083 19284113 -5259444 + AT_rich Low_complexity Low_complexity 1 30 0 3 732 31 44 0 0 chr3L 19285842 19285887 -5257670 + AT_rich Low_complexity Low_complexity 1 45 0 3 732 25 0 0 0 chr3L 19286924 19286949 -5256608 + AT_rich Low_complexity Low_complexity 1 25 0 3 732 592 280 70 53 chr3L 19287051 19287353 -5256204 + DNAREP1_DM LINE Penelope 177 483 -111 3 732 310 85 0 41 chr3L 19287355 19287404 -5256153 + DNAREP1_DM LINE Penelope 547 593 -1 3 732 227 204 0 0 chr3L 19288141 19288190 -5255367 + (CAA)n Simple_repeat Simple_repeat 1 49 0 3 732 26 30 0 0 chr3L 19288686 19288719 -5254838 + AT_rich Low_complexity Low_complexity 1 33 0 3 732 24 32 0 0 chr3L 19289170 19289201 -5254356 + AT_rich Low_complexity Low_complexity 1 31 0 3 732 204 365 0 0 chr3L 19289869 19289943 -5253614 + (CAG)n Simple_repeat Simple_repeat 2 75 0 3 732 207 0 0 0 chr3L 19309670 19309693 -5233864 + (CAT)n Simple_repeat Simple_repeat 1 23 0 3 732 33 43 0 0 chr3L 19310649 19310696 -5232861 + AT_rich Low_complexity Low_complexity 1 47 0 3 732 230 143 20 0 chr3L 19311747 19311796 -5231761 + (AGATG)n Simple_repeat Simple_repeat 1 50 0 3 732 21 36 0 0 chr3L 19312642 19312670 -5230887 + AT_rich Low_complexity Low_complexity 1 28 0 3 732 35 0 0 0 chr3L 19312679 19312714 -5230843 + AT_rich Low_complexity Low_complexity 1 35 0 3 732 23 0 0 0 chr3L 19317517 19317540 -5226017 + AT_rich Low_complexity Low_complexity 1 23 0 3 732 21 36 0 0 chr3L 19320333 19320361 -5223196 + AT_rich Low_complexity Low_complexity 1 28 0 3 732 183 80 0 0 chr3L 19321477 19321502 -5222055 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 732 24 0 0 0 chr3L 19324962 19324986 -5218571 + AT_rich Low_complexity Low_complexity 1 24 0 3 732 375 73 0 0 chr3L 19325021 19325076 -5218481 + (TTCGG)n Simple_repeat Simple_repeat 4 58 0 3 732 23 33 0 0 chr3L 19327369 19327399 -5216158 + AT_rich Low_complexity Low_complexity 1 30 0 3 732 22 56 0 0 chr3L 19327675 19327711 -5215846 + AT_rich Low_complexity Low_complexity 1 36 0 3 732 183 204 0 0 chr3L 19328644 19328688 -5214869 + (ACTG)n Simple_repeat Simple_repeat 4 47 0 3 732 22 35 0 0 chr3L 19329785 19329814 -5213743 + AT_rich Low_complexity Low_complexity 1 29 0 3 732 21 0 0 0 chr3L 19330123 19330144 -5213413 + AT_rich Low_complexity Low_complexity 1 21 0 3 732 25 65 0 0 chr3L 19332434 19332480 -5211077 + AT_rich Low_complexity Low_complexity 1 46 0 3 732 21 0 0 0 chr3L 19338851 19338872 -5204685 + AT_rich Low_complexity Low_complexity 1 21 0 3 732 29 47 0 0 chr3L 19340909 19340952 -5202605 + AT_rich Low_complexity Low_complexity 1 43 0 3 732 28 0 0 0 chr3L 19342851 19342879 -5200678 + AT_rich Low_complexity Low_complexity 1 28 0 3 732 207 0 0 0 chr3L 19344164 19344187 -5199370 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 3 732 23 54 0 0 chr3L 19346889 19346926 -5196631 + AT_rich Low_complexity Low_complexity 1 37 0 3 732 216 0 0 0 chr3L 19347332 19347356 -5196201 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 732 23 0 0 0 chr3L 19348182 19348205 -5195352 + AT_rich Low_complexity Low_complexity 1 23 0 3 732 184 97 0 75 chr3L 19348742 19348809 -5194748 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 3 732 24 32 0 0 chr3L 19349000 19349031 -5194526 + AT_rich Low_complexity Low_complexity 1 31 0 3 732 24 0 0 0 chr3L 19352182 19352206 -5191351 + AT_rich Low_complexity Low_complexity 1 24 0 3 732 43 20 0 0 chr3L 19353418 19353468 -5190089 + AT_rich Low_complexity Low_complexity 1 50 0 3 732 279 0 0 0 chr3L 19355319 19355350 -5188207 + (TTG)n Simple_repeat Simple_repeat 2 32 0 3 732 197 132 26 0 chr3L 19356172 19356210 -5187347 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 732 25 0 0 0 chr3L 19356974 19356999 -5186558 + AT_rich Low_complexity Low_complexity 1 25 0 3 732 213 53 0 109 chr3L 19359549 19359613 -5183944 + (TTGGGG)n Simple_repeat Simple_repeat 2 58 0 3 732 22 0 0 0 chr3L 19361432 19361454 -5182103 + AT_rich Low_complexity Low_complexity 1 22 0 3 732 261 0 0 0 chr3L 19363906 19363935 -5179622 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 732 47 19 0 0 chr3L 19367620 19367674 -5175883 + AT_rich Low_complexity Low_complexity 1 54 0 3 732 31 0 0 0 chr3L 19367948 19367979 -5175578 + AT_rich Low_complexity Low_complexity 1 31 0 3 732 222 37 0 0 chr3L 19368107 19368134 -5175423 + (CA)n Simple_repeat Simple_repeat 1 27 0 3 732 23 0 0 0 chr3L 19368733 19368756 -5174801 + AT_rich Low_complexity Low_complexity 1 23 0 3 732 39 0 0 0 chr3L 19368935 19368974 -5174583 + AT_rich Low_complexity Low_complexity 1 39 0 3 732 36 40 0 0 chr3L 19369839 19369889 -5173668 + AT_rich Low_complexity Low_complexity 1 50 0 3 732 207 0 0 0 chr3L 19370314 19370337 -5173220 + (TG)n Simple_repeat Simple_repeat 2 24 0 3 732 189 0 0 0 chr3L 19372353 19372374 -5171183 + (A)n Simple_repeat Simple_repeat 1 21 0 3 732 203 152 0 21 chr3L 19376822 19376869 -5166688 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 732 24 67 0 0 chr3L 19378364 19378409 -5165148 + AT_rich Low_complexity Low_complexity 1 45 0 3 732 195 69 0 0 chr3L 19380041 19380070 -5163487 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 732 21 0 0 0 chr3L 19380334 19380355 -5163202 + AT_rich Low_complexity Low_complexity 1 21 0 3 732 271 163 0 0 chr3L 19383224 19383267 -5160290 + DNAREP1_DM LINE Penelope 25 67 -527 3 732 23 0 0 0 chr3L 19384671 19384694 -5158863 + AT_rich Low_complexity Low_complexity 1 23 0 3 732 25 51 0 0 chr3L 19384730 19384769 -5158788 + AT_rich Low_complexity Low_complexity 1 39 0 3 732 34 0 0 0 chr3L 19385692 19385726 -5157831 + AT_rich Low_complexity Low_complexity 1 34 0 3 732 26 0 0 0 chr3L 19386245 19386271 -5157286 + AT_rich Low_complexity Low_complexity 1 26 0 3 732 264 130 0 0 chr3L 19387643 19387689 -5155868 + (TG)n Simple_repeat Simple_repeat 1 46 0 3 732 21 0 0 0 chr3L 19388993 19389014 -5154543 + AT_rich Low_complexity Low_complexity 1 21 0 3 732 25 0 0 0 chr3L 19390641 19390666 -5152891 + GC_rich Low_complexity Low_complexity 1 25 0 3 732 31 0 0 0 chr3L 19391041 19391072 -5152485 + AT_rich Low_complexity Low_complexity 1 31 0 3 732 43238 1 0 0 chr3L 19392053 19396746 -5146811 - FW_DM LINE Jockey 0 4692 2 3 732 21 36 0 0 chr3L 19397364 19397392 -5146165 + AT_rich Low_complexity Low_complexity 1 28 0 3 733 189 107 0 0 chr3L 19400891 19400919 -5142638 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 3 733 198 0 0 0 chr3L 19402996 19403018 -5140539 + (AATTG)n Simple_repeat Simple_repeat 1 22 0 3 733 234 62 0 0 chr3L 19406266 19406298 -5137259 + (TG)n Simple_repeat Simple_repeat 2 33 0 3 733 192 40 0 0 chr3L 19406584 19406609 -5136948 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 733 180 125 0 0 chr3L 19414903 19414935 -5128622 + (CTG)n Simple_repeat Simple_repeat 1 32 0 3 733 287 120 100 0 chr3L 19415439 19415489 -5128068 - DNAREP1_DM LINE Penelope -9 585 531 3 733 278 26 26 0 chr3L 19415489 19415528 -5128029 + (TA)n Simple_repeat Simple_repeat 2 41 0 3 733 1009 79 158 0 chr3L 19415528 19415680 -5127877 - DNAREP1_DM LINE Penelope -113 481 306 3 733 632 153 0 0 chr3L 19418068 19418179 -5125378 - DNAREP1_DM LINE Penelope -315 279 169 3 733 596 89 0 0 chr3L 19418206 19418285 -5125272 - DNAREP1_DM LINE Penelope -514 80 2 3 733 205 162 0 0 chr3L 19419489 19419526 -5124031 + (CAGC)n Simple_repeat Simple_repeat 2 38 0 3 733 213 39 0 0 chr3L 19421851 19421877 -5121680 + (TGGA)n Simple_repeat Simple_repeat 2 27 0 3 733 210 171 0 24 chr3L 19425506 19425548 -5118009 + GA-rich Low_complexity Low_complexity 1 41 0 3 733 22 35 0 0 chr3L 19426986 19427015 -5116542 + AT_rich Low_complexity Low_complexity 1 29 0 3 733 22 0 0 0 chr3L 19427091 19427113 -5116444 + AT_rich Low_complexity Low_complexity 1 22 0 3 733 30 0 0 0 chr3L 19430035 19430065 -5113492 + AT_rich Low_complexity Low_complexity 1 30 0 3 733 32 0 0 0 chr3L 19430905 19430937 -5112620 + AT_rich Low_complexity Low_complexity 1 32 0 3 733 23 0 0 0 chr3L 19431826 19431849 -5111708 + AT_rich Low_complexity Low_complexity 1 23 0 3 733 231 215 0 0 chr3L 19433423 19433488 -5110069 + (CAT)n Simple_repeat Simple_repeat 1 65 0 3 733 225 83 0 0 chr3L 19436035 19436071 -5107486 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 3 733 207 100 0 0 chr3L 19439238 19439268 -5104289 + (ATGGTG)n Simple_repeat Simple_repeat 6 35 0 3 733 228 128 0 0 chr3L 19439815 19439854 -5103703 + PROTOP_A DNA P 507 545 -560 3 733 586 0 44 22 chr3L 19440052 19440143 -5103414 + (TAAA)n Simple_repeat Simple_repeat 2 94 0 3 733 21 36 0 0 chr3L 19444938 19444966 -5098591 + AT_rich Low_complexity Low_complexity 1 28 0 3 733 23 0 0 0 chr3L 19446375 19446398 -5097159 + AT_rich Low_complexity Low_complexity 1 23 0 3 733 44 20 0 0 chr3L 19450538 19450589 -5092968 + AT_rich Low_complexity Low_complexity 1 51 0 3 733 22 35 0 0 chr3L 19451771 19451800 -5091757 + AT_rich Low_complexity Low_complexity 1 29 0 3 733 192 40 0 0 chr3L 19454606 19454631 -5088926 + (CGATG)n Simple_repeat Simple_repeat 4 28 0 3 733 21 0 0 0 chr3L 19456736 19456757 -5086800 + AT_rich Low_complexity Low_complexity 1 21 0 3 733 30 27 0 0 chr3L 19456831 19456868 -5086689 + AT_rich Low_complexity Low_complexity 1 37 0 3 733 21 36 0 0 chr3L 19458566 19458594 -5084963 + AT_rich Low_complexity Low_complexity 1 28 0 3 733 310 190 317 16 chr3L 19458849 19458972 -5084585 + DNAREP1_DM LINE Penelope 433 592 -2 3 733 493 167 0 0 chr3L 19461310 19461394 -5082163 + DNAREP1_DM LINE Penelope 1 84 -510 3 733 1906 106 50 134 chr3L 19461487 19461911 -5081646 + DNAREP1_DM LINE Penelope 2 389 -205 3 733 499 122 12 12 chr3L 19461926 19462009 -5081548 + DNAREP1_DM LINE Penelope 512 594 0 3 733 452 227 110 29 chr3L 19462003 19462139 -5081418 + DNAREP1_DM LINE Penelope 249 395 -199 3 733 1934 40 58 45 chr3L 19462182 19462473 -5081084 + DMCR1A LINE CR1 41 335 -4135 3 733 14752 38 47 6 chr3L 19462460 19464256 -5079301 + DMCR1A LINE CR1 2597 4467 -3 3 733 307 235 152 5 chr3L 19464267 19464377 -5079180 + DNAREP1_DM LINE Penelope 432 535 -59 3 733 586 93 484 16 chr3L 19464569 19464693 -5078864 - DNAREP1_DM LINE Penelope -119 475 294 3 733 349 254 61 35 chr3L 19466536 19466650 -5076907 + DNAREP1_DM LINE Penelope 314 430 -164 3 733 278 208 0 0 chr3L 19466694 19466742 -5076815 + DNAREP1_DM LINE Penelope 438 485 -109 3 733 24 0 0 0 chr3L 19466869 19466893 -5076664 + AT_rich Low_complexity Low_complexity 1 24 0 3 733 232 185 0 71 chr3L 19467599 19467669 -5075888 + DNAREP1_DM LINE Penelope 513 577 -17 3 733 339 148 911 0 chr3L 19469554 19469647 -5073910 - DNAREP1_DM LINE Penelope -7 587 403 3 733 268 88 0 0 chr3L 19469647 19469681 -5073876 + DNAREP1_DM LINE Penelope 1 34 -560 3 733 1635 123 214 3 chr3L 19469679 19469996 -5073561 - DNAREP1_DM LINE Penelope -63 531 148 3 733 797 236 98 36 chr3L 19470200 19470424 -5073133 - DNAREP1_DM LINE Penelope -11 583 346 3 733 22 0 0 0 chr3L 19472281 19472303 -5071254 + AT_rich Low_complexity Low_complexity 1 22 0 3 733 21 0 0 0 chr3L 19473298 19473319 -5070238 + AT_rich Low_complexity Low_complexity 1 21 0 3 733 21 0 0 0 chr3L 19473370 19473391 -5070166 + AT_rich Low_complexity Low_complexity 1 21 0 3 733 237 149 12 98 chr3L 19475400 19475482 -5068075 + A-rich Low_complexity Low_complexity 3 77 0 3 733 27 29 0 0 chr3L 19476091 19476125 -5067432 + AT_rich Low_complexity Low_complexity 1 34 0 3 733 3679 2 0 2 chr3L 19480325 19480728 -5062829 + STALKER4_LTR LTR Gypsy 1 402 0 3 733 27 0 0 0 chr3L 19481669 19481696 -5061861 + AT_rich Low_complexity Low_complexity 1 27 0 3 733 1406 93 62 25 chr3L 19481844 19482086 -5061471 - DNAREP1_DM LINE Penelope -342 252 2 3 733 315 169 34 0 chr3L 19484072 19484131 -5059426 + DNAREP1_DM LINE Penelope 6 66 -528 3 733 610 150 156 15 chr3L 19484254 19484389 -5059168 + DNAREP1_DM LINE Penelope 441 594 0 3 733 31 76 0 0 chr3L 19487037 19487103 -5056454 + AT_rich Low_complexity Low_complexity 1 66 0 3 733 23 54 0 0 chr3L 19488671 19488708 -5054849 + AT_rich Low_complexity Low_complexity 1 37 0 3 733 22 35 0 0 chr3L 19494138 19494167 -5049390 + AT_rich Low_complexity Low_complexity 1 29 0 3 733 23 54 0 0 chr3L 19494671 19494708 -5048849 + AT_rich Low_complexity Low_complexity 1 37 0 3 733 197 108 27 0 chr3L 19498165 19498202 -5045355 + (TTTG)n Simple_repeat Simple_repeat 1 38 0 3 733 234 105 0 0 chr3L 19506101 19506139 -5037418 + (TG)n Simple_repeat Simple_repeat 1 38 0 3 733 25 0 0 0 chr3L 19507666 19507691 -5035866 + AT_rich Low_complexity Low_complexity 1 25 0 3 733 24 0 0 0 chr3L 19508632 19508656 -5034901 + AT_rich Low_complexity Low_complexity 1 24 0 3 733 30 27 0 0 chr3L 19513566 19513603 -5029954 + AT_rich Low_complexity Low_complexity 1 37 0 3 733 22 88 0 0 chr3L 19514675 19514732 -5028825 + AT_rich Low_complexity Low_complexity 1 57 0 3 733 21 36 0 0 chr3L 19514796 19514824 -5028733 + AT_rich Low_complexity Low_complexity 1 28 0 3 733 189 196 0 0 chr3L 19515990 19516036 -5027521 + (TCCG)n Simple_repeat Simple_repeat 3 48 0 3 733 28 29 0 0 chr3L 19520504 19520539 -5023018 + AT_rich Low_complexity Low_complexity 1 35 0 3 733 24 0 0 0 chr3L 19522724 19522748 -5020809 + AT_rich Low_complexity Low_complexity 1 24 0 3 733 195 42 0 0 chr3L 19525045 19525069 -5018488 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 733 243 204 0 0 chr3L 19525906 19525960 -5017597 + (ATTCG)n Simple_repeat Simple_repeat 1 54 0 3 734 23 54 0 0 chr3L 19530847 19530884 -5012673 + AT_rich Low_complexity Low_complexity 1 37 0 3 734 24 0 0 0 chr3L 19531378 19531402 -5012155 + AT_rich Low_complexity Low_complexity 1 24 0 3 734 21 36 0 0 chr3L 19540354 19540382 -5003175 + AT_rich Low_complexity Low_complexity 1 28 0 3 734 26 64 0 0 chr3L 19541178 19541225 -5002332 + AT_rich Low_complexity Low_complexity 1 47 0 3 734 29 0 0 0 chr3L 19543079 19543108 -5000449 + AT_rich Low_complexity Low_complexity 1 29 0 3 734 25 75 0 0 chr3L 19550389 19550442 -4993115 + AT_rich Low_complexity Low_complexity 1 53 0 3 734 26 30 0 0 chr3L 19550558 19550591 -4992966 + AT_rich Low_complexity Low_complexity 1 33 0 3 734 24 53 0 0 chr3L 19550623 19550661 -4992896 + AT_rich Low_complexity Low_complexity 1 38 0 3 734 238 254 18 0 chr3L 19551520 19551575 -4991982 + (TTCGGG)n Simple_repeat Simple_repeat 5 60 0 3 734 252 122 0 0 chr3L 19552666 19552707 -4990850 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 734 225 265 0 0 chr3L 19553545 19553613 -4989944 + A-rich Low_complexity Low_complexity 1 68 0 3 734 295 193 0 43 chr3L 19553747 19553839 -4989718 - ROO_I LTR Pao -7517 739 652 3 734 23 33 0 0 chr3L 19553974 19554004 -4989553 + AT_rich Low_complexity Low_complexity 1 30 0 3 734 37 62 0 0 chr3L 19554452 19554517 -4989040 + AT_rich Low_complexity Low_complexity 1 65 0 3 734 216 179 0 0 chr3L 19556032 19556071 -4987486 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 734 180 111 0 0 chr3L 19557109 19557136 -4986421 + (AAGTG)n Simple_repeat Simple_repeat 2 28 0 3 734 202 204 0 0 chr3L 19557449 19557498 -4986059 + (CCCCAA)n Simple_repeat Simple_repeat 3 51 0 3 734 25 83 0 0 chr3L 19559792 19559852 -4983705 + AT_rich Low_complexity Low_complexity 1 60 0 3 734 21 71 0 0 chr3L 19560516 19560558 -4982999 + AT_rich Low_complexity Low_complexity 1 42 0 3 734 21 0 0 0 chr3L 19561260 19561281 -4982276 + AT_rich Low_complexity Low_complexity 1 21 0 3 734 30 45 0 0 chr3L 19562025 19562069 -4981488 + AT_rich Low_complexity Low_complexity 1 44 0 3 734 186 43 0 0 chr3L 19562992 19563015 -4980542 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 3 734 249 213 0 47 chr3L 19564522 19564586 -4978971 + GA-rich Low_complexity Low_complexity 2 62 0 3 734 375 121 0 0 chr3L 19572613 19572671 -4970886 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 3 734 334 258 16 24 chr3L 19574048 19574175 -4969382 + (TTCGGG)n Simple_repeat Simple_repeat 1 126 0 3 734 23 0 0 0 chr3L 19574578 19574601 -4968956 + AT_rich Low_complexity Low_complexity 1 23 0 3 734 276 77 0 0 chr3L 19577049 19577088 -4966469 + (CAA)n Simple_repeat Simple_repeat 3 41 0 3 734 249 192 0 0 chr3L 19577137 19577189 -4966368 + (CA)n Simple_repeat Simple_repeat 1 52 0 3 734 33 25 0 0 chr3L 19578098 19578138 -4965419 + AT_rich Low_complexity Low_complexity 1 40 0 3 734 21 57 0 0 chr3L 19578404 19578439 -4965118 + AT_rich Low_complexity Low_complexity 1 35 0 3 734 21 0 0 0 chr3L 19581162 19581183 -4962374 + AT_rich Low_complexity Low_complexity 1 21 0 3 734 27 49 0 0 chr3L 19583869 19583910 -4959647 + AT_rich Low_complexity Low_complexity 1 41 0 3 734 23 0 0 0 chr3L 19584889 19584912 -4958645 + AT_rich Low_complexity Low_complexity 1 23 0 3 734 29 47 0 0 chr3L 19586397 19586440 -4957117 + AT_rich Low_complexity Low_complexity 1 43 0 3 734 220 250 0 0 chr3L 19595890 19595942 -4947615 + (CGG)n Simple_repeat Simple_repeat 3 54 0 3 734 29 0 0 0 chr3L 19598549 19598578 -4944979 + AT_rich Low_complexity Low_complexity 1 29 0 3 734 21 36 0 0 chr3L 19598692 19598720 -4944837 + AT_rich Low_complexity Low_complexity 1 28 0 3 734 37 0 0 0 chr3L 19598729 19598766 -4944791 + AT_rich Low_complexity Low_complexity 1 37 0 3 734 26 0 0 0 chr3L 19607496 19607522 -4936035 + AT_rich Low_complexity Low_complexity 1 26 0 3 734 42 77 0 0 chr3L 19613455 19613546 -4930011 + AT_rich Low_complexity Low_complexity 1 91 0 3 734 224 30 30 0 chr3L 19617660 19617693 -4925864 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 734 21 0 0 0 chr3L 19621511 19621532 -4922025 + AT_rich Low_complexity Low_complexity 1 21 0 3 734 2470 109 123 105 chr3L 19621637 19622220 -4921337 + DNAREP1_DM LINE Penelope 1 594 0 3 734 180 114 54 54 chr3L 19623357 19623431 -4920126 + (CTA)n Simple_repeat Simple_repeat 1 74 0 3 734 23 0 0 0 chr3L 19629140 19629163 -4914394 + AT_rich Low_complexity Low_complexity 1 23 0 3 734 21 0 0 0 chr3L 19635996 19636017 -4907540 + AT_rich Low_complexity Low_complexity 1 21 0 3 734 28 29 0 0 chr3L 19636174 19636209 -4907348 + AT_rich Low_complexity Low_complexity 1 35 0 3 734 219 36 0 0 chr3L 19637179 19637207 -4906350 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 734 25 51 0 0 chr3L 19638193 19638232 -4905325 + AT_rich Low_complexity Low_complexity 1 39 0 3 734 21 0 0 0 chr3L 19638553 19638574 -4904983 + AT_rich Low_complexity Low_complexity 1 21 0 3 734 24 0 0 0 chr3L 19639044 19639068 -4904489 + AT_rich Low_complexity Low_complexity 1 24 0 3 734 25 0 0 0 chr3L 19639917 19639942 -4903615 + AT_rich Low_complexity Low_complexity 1 25 0 3 734 1118 62 365 32 chr3L 19640043 19640265 -4903292 + DMRP1 Unknown Unknown 4 299 -47 3 734 24 67 0 0 chr3L 19641557 19641602 -4901955 + AT_rich Low_complexity Low_complexity 1 45 0 3 734 225 0 0 0 chr3L 19643892 19643917 -4899640 + (T)n Simple_repeat Simple_repeat 1 25 0 3 734 423 98 0 0 chr3L 19644661 19644722 -4898835 + (TTG)n Simple_repeat Simple_repeat 3 63 0 3 734 217 289 0 0 chr3L 19645395 19645447 -4898110 + (CTG)n Simple_repeat Simple_repeat 2 53 0 3 734 204 295 0 0 chr3L 19646782 19646860 -4896697 + G-rich Low_complexity Low_complexity 6 83 0 3 734 204 40 0 0 chr3L 19650320 19650345 -4893212 + (CCG)n Simple_repeat Simple_repeat 3 27 0 3 734 207 0 0 0 chr3L 19654224 19654247 -4889310 + (CA)n Simple_repeat Simple_repeat 2 24 0 3 734 210 37 0 0 chr3L 19660059 19660086 -4883471 + (A)n Simple_repeat Simple_repeat 1 27 0 3 735 21 36 0 0 chr3L 19660838 19660866 -4882691 + AT_rich Low_complexity Low_complexity 1 28 0 3 735 35 24 0 0 chr3L 19663022 19663064 -4880493 + AT_rich Low_complexity Low_complexity 1 42 0 3 735 189 0 0 0 chr3L 19663752 19663773 -4879784 + (TA)n Simple_repeat Simple_repeat 2 22 0 3 735 258 281 0 0 chr3L 19666599 19666663 -4876894 + (TTCGGG)n Simple_repeat Simple_repeat 4 67 0 3 735 231 125 0 0 chr3L 19666750 19666790 -4876767 + (TGAA)n Simple_repeat Simple_repeat 3 42 0 3 735 249 254 0 0 chr3L 19670228 19670291 -4873266 - DOC3_DM LINE Jockey -4167 573 511 3 735 280 155 14 14 chr3L 19674112 19674184 -4869373 + (CAG)n Simple_repeat Simple_repeat 3 74 0 3 735 207 208 0 20 chr3L 19676058 19676107 -4867450 + (CAG)n Simple_repeat Simple_repeat 2 49 0 3 735 254 167 42 0 chr3L 19676784 19676832 -4866725 + DNAREP1_DM LINE Penelope 1 50 -544 3 735 592 172 181 29 chr3L 19676839 19676977 -4866580 + DNAREP1_DM LINE Penelope 425 583 -11 3 735 2440 81 211 4 chr3L 19677294 19677785 -4865772 + DNAREP1_DM LINE Penelope 1 593 -1 3 735 271 190 0 0 chr3L 19678520 19678599 -4864958 - ROO_I LTR Pao -7524 732 654 3 735 249 83 0 0 chr3L 19679467 19679503 -4864054 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 735 183 114 0 0 chr3L 19680276 19680311 -4863246 + (CTG)n Simple_repeat Simple_repeat 1 35 0 3 735 27 29 0 0 chr3L 19681050 19681084 -4862473 + AT_rich Low_complexity Low_complexity 1 34 0 3 735 37 23 0 0 chr3L 19683130 19683174 -4860383 + AT_rich Low_complexity Low_complexity 1 44 0 3 735 249 98 0 0 chr3L 19683363 19683404 -4860153 + (GA)n Simple_repeat Simple_repeat 2 42 0 3 735 204 146 0 68 chr3L 19685295 19685354 -4858203 + (TTGG)n Simple_repeat Simple_repeat 1 55 0 3 735 293 174 22 44 chr3L 19685612 19685702 -4857855 + (CAGAGA)n Simple_repeat Simple_repeat 2 89 0 3 735 22 35 0 0 chr3L 19686753 19686782 -4856775 + AT_rich Low_complexity Low_complexity 1 29 0 3 735 25 75 0 0 chr3L 19686936 19686989 -4856568 + AT_rich Low_complexity Low_complexity 1 53 0 3 735 207 125 0 0 chr3L 19687478 19687518 -4856039 + (TTG)n Simple_repeat Simple_repeat 1 40 0 3 735 264 231 0 0 chr3L 19687706 19687771 -4855786 + T-rich Low_complexity Low_complexity 1 65 0 3 735 201 176 0 0 chr3L 19688885 19688919 -4854638 + T-rich Low_complexity Low_complexity 1 34 0 3 735 21 0 0 0 chr3L 19690401 19690422 -4853135 + AT_rich Low_complexity Low_complexity 1 21 0 3 735 291 28 0 0 chr3L 19693357 19693393 -4850164 + (TA)n Simple_repeat Simple_repeat 1 36 0 3 735 237 65 0 0 chr3L 19693504 19693535 -4850022 + (CGAAT)n Simple_repeat Simple_repeat 5 35 0 3 735 25 65 0 0 chr3L 19699161 19699207 -4844350 + AT_rich Low_complexity Low_complexity 1 46 0 3 735 251 93 0 23 chr3L 19699584 19699628 -4843929 + (GGTTG)n Simple_repeat Simple_repeat 5 47 0 3 735 43504 2 0 0 chr3L 19701620 19706341 -4837216 - DOC LINE Jockey -1 4724 4 3 735 189 0 0 0 chr3L 19712683 19712704 -4830853 + (CATA)n Simple_repeat Simple_repeat 2 22 0 3 735 23 0 0 0 chr3L 19712761 19712784 -4830773 + AT_rich Low_complexity Low_complexity 1 23 0 3 735 228 67 0 0 chr3L 19713997 19714027 -4829530 + (TCC)n Simple_repeat Simple_repeat 3 32 0 3 735 270 137 0 136 chr3L 19723639 19723698 -4819859 - DNAREP1_DM LINE Penelope -148 446 396 3 735 201 94 0 0 chr3L 19724337 19724369 -4819188 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 735 393 117 0 0 chr3L 19725195 19725255 -4818302 + (CATAC)n Simple_repeat Simple_repeat 5 64 0 3 735 198 0 0 0 chr3L 19725726 19725748 -4817809 + (TAA)n Simple_repeat Simple_repeat 1 22 0 3 735 216 0 0 0 chr3L 19728021 19728045 -4815512 + (ATG)n Simple_repeat Simple_repeat 3 26 0 3 735 194 143 0 20 chr3L 19730096 19730146 -4813411 + (GCTG)n Simple_repeat Simple_repeat 2 50 0 3 735 24 0 0 0 chr3L 19730278 19730302 -4813255 + AT_rich Low_complexity Low_complexity 1 24 0 3 735 258 56 0 0 chr3L 19732294 19732330 -4811227 + (A)n Simple_repeat Simple_repeat 1 36 0 3 735 43417 2 0 1 chr3L 19733031 19737757 -4805800 - DOC LINE Jockey 0 4725 4 3 735 189 0 0 0 chr3L 19744099 19744120 -4799437 + (CATA)n Simple_repeat Simple_repeat 2 22 0 3 735 23 0 0 0 chr3L 19744177 19744200 -4799357 + AT_rich Low_complexity Low_complexity 1 23 0 3 735 228 67 0 0 chr3L 19745413 19745443 -4798114 + (TCC)n Simple_repeat Simple_repeat 3 32 0 3 735 270 137 0 136 chr3L 19755054 19755113 -4788444 - DNAREP1_DM LINE Penelope -148 446 396 3 735 201 94 0 0 chr3L 19755752 19755784 -4787773 + (GA)n Simple_repeat Simple_repeat 2 33 0 3 735 393 117 0 0 chr3L 19756610 19756670 -4786887 + (CATAC)n Simple_repeat Simple_repeat 5 64 0 3 735 198 0 0 0 chr3L 19757141 19757163 -4786394 + (TAA)n Simple_repeat Simple_repeat 1 22 0 3 735 216 0 0 0 chr3L 19759436 19759460 -4784097 + (ATG)n Simple_repeat Simple_repeat 3 26 0 3 735 194 143 0 20 chr3L 19761511 19761561 -4781996 + (GCTG)n Simple_repeat Simple_repeat 2 50 0 3 735 24 0 0 0 chr3L 19761693 19761717 -4781840 + AT_rich Low_complexity Low_complexity 1 24 0 3 735 258 56 0 0 chr3L 19763708 19763744 -4779813 + (A)n Simple_repeat Simple_repeat 1 36 0 3 735 43639 0 0 1 chr3L 19764445 19769173 -4774384 - DOC LINE Jockey 0 4725 2 3 735 189 0 0 0 chr3L 19770411 19770432 -4773125 + (CATTC)n Simple_repeat Simple_repeat 4 24 0 3 735 23 0 0 0 chr3L 19771243 19771266 -4772291 + AT_rich Low_complexity Low_complexity 1 23 0 3 735 210 273 0 0 chr3L 19771349 19771404 -4772153 + (CAAA)n Simple_repeat Simple_repeat 4 58 0 3 735 21 82 0 0 chr3L 19772053 19772102 -4771455 + AT_rich Low_complexity Low_complexity 1 49 0 3 735 24 85 0 0 chr3L 19773382 19773441 -4770116 + AT_rich Low_complexity Low_complexity 1 59 0 3 735 27 62 0 0 chr3L 19776092 19776140 -4767417 + AT_rich Low_complexity Low_complexity 1 48 0 3 735 327 252 43 78 chr3L 19780020 19780136 -4763421 + DNAREP1_DM LINE Penelope 367 478 -116 3 735 194 0 39 0 chr3L 19780137 19780163 -4763394 + (AATAG)n Simple_repeat Simple_repeat 5 31 0 3 735 333 234 0 0 chr3L 19780166 19780243 -4763314 + DNAREP1_DM LINE Penelope 518 594 0 3 735 222 214 0 41 chr3L 19785489 19785562 -4757995 + (TTTAA)n Simple_repeat Simple_repeat 2 71 0 3 736 22 0 0 0 chr3L 19791989 19792011 -4751546 + AT_rich Low_complexity Low_complexity 1 22 0 3 736 34 24 0 0 chr3L 19794490 19794531 -4749026 + AT_rich Low_complexity Low_complexity 1 41 0 3 736 21 0 0 0 chr3L 19805975 19805996 -4737561 + AT_rich Low_complexity Low_complexity 1 21 0 3 736 186 43 0 0 chr3L 19811468 19811491 -4732066 + (CAA)n Simple_repeat Simple_repeat 1 23 0 3 736 180 111 0 0 chr3L 19811738 19811765 -4731792 + (CACCAT)n Simple_repeat Simple_repeat 3 29 0 3 736 215 338 0 0 chr3L 19812349 19812420 -4731137 + (CGG)n Simple_repeat Simple_repeat 1 71 0 3 736 4425 6 0 0 chr3L 19813440 19813921 -4729636 - T412LTR LTR LTR 0 481 1 3 736 61912 2 0 10 chr3L 19813811 19820779 -4722778 - DM412 LTR Gypsy 0 6897 1 3 736 4425 6 0 0 chr3L 19820465 19820946 -4722611 - T412LTR LTR LTR 0 481 1 3 736 210 118 0 0 chr3L 19821523 19821557 -4722000 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 736 214 266 0 0 chr3L 19822573 19822637 -4720920 + A-rich Low_complexity Low_complexity 1 64 0 3 736 31 0 0 0 chr3L 19822737 19822768 -4720789 + AT_rich Low_complexity Low_complexity 1 31 0 3 736 201 167 24 0 chr3L 19825130 19825172 -4718385 + (CTG)n Simple_repeat Simple_repeat 1 43 0 3 736 213 213 26 13 chr3L 19827583 19827659 -4715898 + (TTTAA)n Simple_repeat Simple_repeat 4 80 0 3 736 25 31 0 0 chr3L 19833144 19833176 -4710381 + AT_rich Low_complexity Low_complexity 1 32 0 3 736 298 172 9 66 chr3L 19835939 19836045 -4707512 + ROO_I LTR Pao 644 743 -7513 3 736 225 239 0 0 chr3L 19836914 19836981 -4706576 + (CAG)n Simple_repeat Simple_repeat 3 69 0 3 736 189 121 0 0 chr3L 19837254 19837287 -4706270 + (CAG)n Simple_repeat Simple_repeat 1 33 0 3 736 209 161 0 0 chr3L 19837497 19837528 -4706029 + (CAG)n Simple_repeat Simple_repeat 1 31 0 3 736 210 150 0 0 chr3L 19837701 19837741 -4705816 + (CAG)n Simple_repeat Simple_repeat 1 40 0 3 736 28 0 0 0 chr3L 19838264 19838292 -4705265 + AT_rich Low_complexity Low_complexity 1 28 0 3 736 21 0 0 0 chr3L 19839286 19839307 -4704250 + AT_rich Low_complexity Low_complexity 1 21 0 3 736 4017 0 0 0 chr3L 19841656 19842084 -4701473 - ROO_LTR LTR Pao 0 428 1 3 736 74738 1 0 2 chr3L 19842084 19850360 -4693197 - ROO_I LTR Pao 0 8256 1 3 736 4017 0 0 0 chr3L 19850360 19850788 -4692769 - ROO_LTR LTR Pao 0 428 1 3 736 23 54 0 0 chr3L 19853981 19854018 -4689539 + AT_rich Low_complexity Low_complexity 1 37 0 3 736 25 51 0 0 chr3L 19854349 19854388 -4689169 + AT_rich Low_complexity Low_complexity 1 39 0 3 736 614 128 147 0 chr3L 19854388 19854497 -4689060 - DMRT1B LINE R1 -5058 125 1 3 736 12401 92 3 2 chr3L 19854974 19856707 -4686850 + S_DM DNA Tc1 1 1736 0 3 736 301 250 0 0 chr3L 19857223 19857291 -4686266 - ROO_I LTR Pao -6539 1717 1650 3 736 21490 57 39 13 chr3L 19857300 19860141 -4683416 - DMCR1A LINE CR1 -219 4251 1337 3 736 30 0 0 0 chr3L 19866425 19866455 -4677102 + AT_rich Low_complexity Low_complexity 1 30 0 3 736 324 127 0 0 chr3L 19874858 19874913 -4668644 + (TA)n Simple_repeat Simple_repeat 2 56 0 3 736 234 91 0 0 chr3L 19880815 19880848 -4662709 + (TCC)n Simple_repeat Simple_repeat 2 34 0 3 736 214 319 0 11 chr3L 19881444 19881536 -4662021 + CT-rich Low_complexity Low_complexity 2 92 0 3 736 225 265 0 0 chr3L 19881900 19881968 -4661589 + T-rich Low_complexity Low_complexity 1 68 0 3 736 21 0 0 0 chr3L 19882064 19882085 -4661472 + AT_rich Low_complexity Low_complexity 1 21 0 3 736 300 70 0 0 chr3L 19882297 19882340 -4661217 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 736 31 44 0 0 chr3L 19883987 19884032 -4659525 + AT_rich Low_complexity Low_complexity 1 45 0 3 736 26 0 0 0 chr3L 19884296 19884322 -4659235 + AT_rich Low_complexity Low_complexity 1 26 0 3 736 254 167 0 60 chr3L 19884429 19884512 -4659045 + T-rich Low_complexity Low_complexity 2 79 0 3 736 221 318 0 0 chr3L 19884636 19884702 -4658855 + (TCG)n Simple_repeat Simple_repeat 1 66 0 3 736 284 203 0 39 chr3L 19884782 19884859 -4658698 - ROO_I LTR Pao -7526 730 657 3 736 303 196 0 71 chr3L 19885415 19885514 -4658043 - ROO_I LTR Pao -7529 727 636 3 736 293 274 0 0 chr3L 19887080 19887153 -4656404 - ROO_I LTR Pao -7531 725 653 3 736 180 152 0 0 chr3L 19888930 19888963 -4654594 + (TTG)n Simple_repeat Simple_repeat 1 33 0 3 736 180 176 0 0 chr3L 19889534 19889568 -4653989 + (CTG)n Simple_repeat Simple_repeat 2 35 0 3 736 21 0 0 0 chr3L 19895671 19895692 -4647865 + AT_rich Low_complexity Low_complexity 1 21 0 3 736 184 222 12 24 chr3L 19895940 19896023 -4647534 + (GAGTG)n Simple_repeat Simple_repeat 1 82 0 3 736 195 139 0 0 chr3L 19896567 19896603 -4646954 + (CAA)n Simple_repeat Simple_repeat 2 37 0 3 736 222 235 0 0 chr3L 19896663 19896714 -4646843 + (TTG)n Simple_repeat Simple_repeat 3 53 0 3 736 204 40 0 0 chr3L 19897986 19898011 -4645546 + (CAA)n Simple_repeat Simple_repeat 1 25 0 3 736 257 141 35 12 chr3L 19898038 19898124 -4645433 + (CAA)n Simple_repeat Simple_repeat 1 88 0 3 736 24 0 0 0 chr3L 19898442 19898466 -4645091 + AT_rich Low_complexity Low_complexity 1 24 0 3 736 207 0 0 0 chr3L 19898695 19898718 -4644839 + (A)n Simple_repeat Simple_repeat 1 23 0 3 736 209 222 0 0 chr3L 19900514 19900559 -4642998 + (TA)n Simple_repeat Simple_repeat 2 46 0 3 736 243 88 0 0 chr3L 19910280 19910314 -4633243 + (GGAGAA)n Simple_repeat Simple_repeat 6 39 0 3 736 23 0 0 0 chr3L 19911555 19911578 -4631979 + AT_rich Low_complexity Low_complexity 1 23 0 3 736 246 95 0 0 chr3L 19912023 19912065 -4631492 + (GGA)n Simple_repeat Simple_repeat 2 43 0 3 736 209 195 0 24 chr3L 19912222 19912264 -4631293 + (CTG)n Simple_repeat Simple_repeat 1 41 0 3 736 207 139 0 0 chr3L 19913400 19913436 -4630121 + (CTG)n Simple_repeat Simple_repeat 3 38 0 3 736 195 139 0 0 chr3L 19914633 19914669 -4628888 + (TTG)n Simple_repeat Simple_repeat 2 37 0 3 736 29 60 0 0 chr3L 19917843 19917893 -4625664 + AT_rich Low_complexity Low_complexity 1 50 0 3 736 21 71 0 0 chr3L 19920146 19920188 -4623369 + AT_rich Low_complexity Low_complexity 1 42 0 3 736 40 0 0 0 chr3L 19922078 19922118 -4621439 + AT_rich Low_complexity Low_complexity 1 40 0 3 736 270 0 0 0 chr3L 19922385 19922415 -4621142 + (TC)n Simple_repeat Simple_repeat 2 31 0 3 737 21 0 0 0 chr3L 19925450 19925471 -4618086 + AT_rich Low_complexity Low_complexity 1 21 0 3 737 309 89 0 0 chr3L 19925610 19925655 -4617902 + (CAGT)n Simple_repeat Simple_repeat 1 45 0 3 737 36 40 0 0 chr3L 19927408 19927458 -4616099 + AT_rich Low_complexity Low_complexity 1 50 0 3 737 22 0 0 0 chr3L 19927661 19927683 -4615874 + AT_rich Low_complexity Low_complexity 1 22 0 3 737 195 42 0 0 chr3L 19929392 19929416 -4614141 + (A)n Simple_repeat Simple_repeat 1 24 0 3 737 27 29 0 0 chr3L 19931908 19931942 -4611615 + AT_rich Low_complexity Low_complexity 1 34 0 3 737 239 231 0 0 chr3L 19932456 19932508 -4611049 + (TG)n Simple_repeat Simple_repeat 2 53 0 3 737 31 0 0 0 chr3L 19933742 19933773 -4609784 + AT_rich Low_complexity Low_complexity 1 31 0 3 737 26 0 0 0 chr3L 19934724 19934750 -4608807 + AT_rich Low_complexity Low_complexity 1 26 0 3 737 28 29 0 0 chr3L 19934858 19934893 -4608664 + AT_rich Low_complexity Low_complexity 1 35 0 3 737 225 146 0 0 chr3L 19936814 19936862 -4606695 + (T)n Simple_repeat Simple_repeat 1 48 0 3 737 180 0 0 0 chr3L 19937688 19937708 -4605849 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 737 1662 89 106 79 chr3L 19940441 19940770 -4602787 - DMRP1 Unknown Unknown -7 339 2 3 737 31 58 0 0 chr3L 19940786 19940838 -4602719 + AT_rich Low_complexity Low_complexity 1 52 0 3 737 23 33 0 0 chr3L 19941603 19941633 -4601924 + AT_rich Low_complexity Low_complexity 1 30 0 3 737 23 0 0 0 chr3L 19944389 19944412 -4599145 + AT_rich Low_complexity Low_complexity 1 23 0 3 737 23 0 0 0 chr3L 19945888 19945911 -4597646 + AT_rich Low_complexity Low_complexity 1 23 0 3 737 28 0 0 0 chr3L 19946525 19946553 -4597004 + AT_rich Low_complexity Low_complexity 1 28 0 3 737 246 266 25 25 chr3L 19949993 19950074 -4593483 + C-rich Low_complexity Low_complexity 2 82 0 3 737 21 57 0 0 chr3L 19950297 19950332 -4593225 + AT_rich Low_complexity Low_complexity 1 35 0 3 737 376 125 0 5 chr3L 19950510 19950578 -4592979 - DNAREP1_DM LINE Penelope -107 487 431 3 737 347 254 71 0 chr3L 19950660 19950786 -4592771 - DNAREP1_DM LINE Penelope -459 135 1 3 737 21 36 0 0 chr3L 19953174 19953202 -4590355 + AT_rich Low_complexity Low_complexity 1 28 0 3 737 22 0 0 0 chr3L 19955593 19955615 -4587942 + AT_rich Low_complexity Low_complexity 1 22 0 3 737 21 0 0 0 chr3L 19959162 19959183 -4584374 + AT_rich Low_complexity Low_complexity 1 21 0 3 737 209 95 0 67 chr3L 19960016 19960061 -4583496 + (GTTTG)n Simple_repeat Simple_repeat 5 46 0 3 737 247 182 150 38 chr3L 19961767 19961847 -4581710 + DNAREP1_DM LINE Penelope 369 457 -137 3 737 183 42 0 0 chr3L 19962344 19962368 -4581189 + (TG)n Simple_repeat Simple_repeat 2 25 0 3 737 29 0 0 0 chr3L 19962438 19962467 -4581090 + AT_rich Low_complexity Low_complexity 1 29 0 3 737 189 0 0 0 chr3L 19965888 19965909 -4577648 + (TA)n Simple_repeat Simple_repeat 1 21 0 3 737 280 202 89 0 chr3L 19967020 19967099 -4576458 - DNAREP1_DM LINE Penelope -41 553 468 3 737 26 0 0 0 chr3L 19967331 19967357 -4576200 + AT_rich Low_complexity Low_complexity 1 26 0 3 737 698 104 0 0 chr3L 19968268 19968374 -4575183 - DMRP1 Unknown Unknown -227 119 14 3 737 198 71 0 0 chr3L 19974087 19974115 -4569442 + (GATTG)n Simple_repeat Simple_repeat 2 29 0 3 737 23 86 0 0 chr3L 19974373 19974431 -4569126 + AT_rich Low_complexity Low_complexity 1 58 0 3 737 21 71 0 0 chr3L 19974482 19974524 -4569033 + AT_rich Low_complexity Low_complexity 1 42 0 3 737 257 261 0 0 chr3L 19975823 19975888 -4567669 + GA-rich Low_complexity Low_complexity 1 65 0 3 737 223 224 9 9 chr3L 19976699 19976807 -4566750 + (CAG)n Simple_repeat Simple_repeat 3 110 0 3 737 27 29 0 0 chr3L 19979054 19979088 -4564469 + AT_rich Low_complexity Low_complexity 1 34 0 3 737 298 305 7 7 chr3L 19979963 19980105 -4563452 + (CAG)n Simple_repeat Simple_repeat 2 143 0 3 737 23 0 0 0 chr3L 19982261 19982284 -4561273 + AT_rich Low_complexity Low_complexity 1 23 0 3 737 21 0 0 0 chr3L 19982505 19982526 -4561031 + AT_rich Low_complexity Low_complexity 1 21 0 3 737 204 97 0 0 chr3L 19983428 19983459 -4560098 + (CAGTA)n Simple_repeat Simple_repeat 4 34 0 3 737 220 313 15 0 chr3L 19985224 19985291 -4558266 + (CATATA)n Simple_repeat Simple_repeat 5 72 0 3 737 204 67 0 0 chr3L 19988195 19988225 -4555332 + (A)n Simple_repeat Simple_repeat 1 30 0 3 737 21 36 0 0 chr3L 19988347 19988375 -4555182 + AT_rich Low_complexity Low_complexity 1 28 0 3 737 180 0 0 0 chr3L 19989371 19989391 -4554166 + (CTATT)n Simple_repeat Simple_repeat 3 22 0 3 737 21 0 0 0 chr3L 19989924 19989945 -4553612 + AT_rich Low_complexity Low_complexity 1 21 0 3 737 28 48 0 0 chr3L 19990689 19990731 -4552826 + AT_rich Low_complexity Low_complexity 1 42 0 3 737 24 0 0 0 chr3L 19993773 19993797 -4549760 + AT_rich Low_complexity Low_complexity 1 24 0 3 737 202 146 24 0 chr3L 19993873 19993914 -4549643 + A-rich Low_complexity Low_complexity 3 44 0 3 737 22 35 0 0 chr3L 19995321 19995350 -4548207 + AT_rich Low_complexity Low_complexity 1 29 0 3 737 40 67 0 0 chr3L 19997974 19998049 -4545508 + AT_rich Low_complexity Low_complexity 1 75 0 3 737 22 0 0 0 chr3L 19999142 19999164 -4544393 + AT_rich Low_complexity Low_complexity 1 22 0 3 737 243 0 0 0 chr3L 20016782 20016809 -4526748 + (A)n Simple_repeat Simple_repeat 1 27 0 3 737 213 39 0 0 chr3L 20018587 20018613 -4524944 + (A)n Simple_repeat Simple_repeat 1 26 0 3 737 228 67 0 0 chr3L 20019023 20019053 -4524504 + (TTC)n Simple_repeat Simple_repeat 2 31 0 3 737 204 222 0 0 chr3L 20019499 20019535 -4524022 + polypyrimidine Low_complexity Low_complexity 2 37 0 3 737 180 0 0 0 chr3L 20021638 20021658 -4521899 + (TATAG)n Simple_repeat Simple_repeat 1 20 0 3 737 25 51 0 0 chr3L 20022318 20022357 -4521200 + AT_rich Low_complexity Low_complexity 1 39 0 3 737 37 62 0 0 chr3L 20023480 20023545 -4520012 + AT_rich Low_complexity Low_complexity 1 65 0 3 737 22 70 0 0 chr3L 20024493 20024536 -4519021 + AT_rich Low_complexity Low_complexity 1 43 0 3 737 52 64 0 0 chr3L 20026699 20026793 -4516764 + AT_rich Low_complexity Low_complexity 1 94 0 3 737 654 128 0 8 chr3L 20027160 20027278 -4516279 - DNAREP1_DM LINE Penelope -332 262 146 3 737 41 36 0 0 chr3L 20027376 20027431 -4516126 + AT_rich Low_complexity Low_complexity 1 55 0 3 737 22 0 0 0 chr3L 20030527 20030549 -4513008 + AT_rich Low_complexity Low_complexity 1 22 0 3 737 1669 81 3 116 chr3L 20033671 20034007 -4509550 + Invader3_LTR LTR Gypsy 1 298 0 3 737 270 73 0 0 chr3L 20034470 20034511 -4509046 + (CATCG)n Simple_repeat Simple_repeat 4 44 0 3 737 221 109 22 0 chr3L 20034957 20035003 -4508554 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 737 309 275 32 32 chr3L 20037022 20037146 -4506411 + DNAREP1_DM LINE Penelope 322 445 -149 3 737 25 75 0 0 chr3L 20044865 20044918 -4498639 + AT_rich Low_complexity Low_complexity 1 53 0 3 737 27 29 0 0 chr3L 20045002 20045036 -4498521 + AT_rich Low_complexity Low_complexity 1 34 0 3 737 26 88 0 0 chr3L 20046863 20046931 -4496626 + AT_rich Low_complexity Low_complexity 1 68 0 3 737 27 73 0 0 chr3L 20047313 20047368 -4496189 + AT_rich Low_complexity Low_complexity 1 55 0 3 737 23 0 0 0 chr3L 20048535 20048558 -4494999 + AT_rich Low_complexity Low_complexity 1 23 0 3 737 589 74 0 0 chr3L 20048666 20048747 -4494810 + DNAREP1_DM LINE Penelope 5 85 -509 3 737 969 81 101 48 chr3L 20048737 20048905 -4494652 + DNAREP1_DM LINE Penelope 414 590 -4 3 737 36 70 0 0 chr3L 20048930 20049001 -4494556 + AT_rich Low_complexity Low_complexity 1 71 0 3 737 180 97 0 0 chr3L 20049788 20049819 -4493738 + (A)n Simple_repeat Simple_repeat 1 31 0 3 738 234 105 0 0 chr3L 20061934 20061972 -4481585 + (TA)n Simple_repeat Simple_repeat 1 38 0 3 738 23 0 0 0 chr3L 20072656 20072679 -4470878 + AT_rich Low_complexity Low_complexity 1 23 0 3 738 249 268 0 0 chr3L 20073256 20073312 -4470245 + (CATA)n Simple_repeat Simple_repeat 2 57 0 3 738 24 0 0 0 chr3L 20074899 20074923 -4468634 + AT_rich Low_complexity Low_complexity 1 24 0 3 738 183 42 0 0 chr3L 20075964 20075988 -4467569 + (CTA)n Simple_repeat Simple_repeat 2 25 0 3 738 213 235 20 0 chr3L 20079257 20079308 -4464249 + (GGTTG)n Simple_repeat Simple_repeat 5 56 0 3 738 270 81 0 0 chr3L 20079342 20079379 -4464178 + (ACTG)n Simple_repeat Simple_repeat 1 37 0 3 738 218 167 0 0 chr3L 20081004 20081040 -4462517 + (GCTG)n Simple_repeat Simple_repeat 3 38 0 3 738 24 0 0 0 chr3L 20082926 20082950 -4460607 + AT_rich Low_complexity Low_complexity 1 24 0 3 738 39 38 0 0 chr3L 20082981 20083034 -4460523 + AT_rich Low_complexity Low_complexity 1 53 0 3 738 26 64 0 0 chr3L 20084765 20084812 -4458745 + AT_rich Low_complexity Low_complexity 1 47 0 3 738 30 59 0 0 chr3L 20085687 20085738 -4457819 + AT_rich Low_complexity Low_complexity 1 51 0 3 738 297 151 0 0 chr3L 20095014 20095067 -4448490 + (TGGG)n Simple_repeat Simple_repeat 2 54 0 3 738 183 42 0 0 chr3L 20096612 20096636 -4446921 + (CA)n Simple_repeat Simple_repeat 1 24 0 3 738 235 224 17 0 chr3L 20097883 20097941 -4445616 + CT-rich Low_complexity Low_complexity 2 60 0 3 738 192 77 0 0 chr3L 20098152 20098178 -4445379 + (GA)n Simple_repeat Simple_repeat 2 27 0 3 738 324 188 67 56 chr3L 20100742 20100832 -4442725 - PENELOPE LINE Penelope -120 4041 3951 3 738 612 169 8 31 chr3L 20100789 20100917 -4442640 + DNAREP1_DM LINE Penelope 35 159 -435 3 738 1249 102 198 47 chr3L 20101016 20101034 -4442523 + DNAREP1_DM LINE Penelope 298 315 -279 3 738 312 70 0 0 chr3L 20101034 20101077 -4442480 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 738 1249 102 198 47 chr3L 20101077 20101316 -4442241 + DNAREP1_DM LINE Penelope 316 593 -1 3 738 480 167 45 4 chr3L 20102989 20103143 -4440414 + DMRP1 Unknown Unknown 95 287 -59 3 738 3972 2 0 2 chr3L 20106812 20107241 -4436316 - ROO_LTR LTR Pao 0 428 1 3 738 49239 0 1 7 chr3L 20107241 20115583 -4427974 - ROO_I LTR Pao 0 8256 1 3 738 4002 2 0 0 chr3L 20115583 20116011 -4427546 - ROO_LTR LTR Pao 0 428 1 3 738 21 0 0 0 chr3L 20122035 20122056 -4421501 + AT_rich Low_complexity Low_complexity 1 21 0 3 738 28 71 0 0 chr3L 20134207 20134263 -4409294 + AT_rich Low_complexity Low_complexity 1 56 0 3 738 22 0 0 0 chr3L 20135715 20135737 -4407820 + AT_rich Low_complexity Low_complexity 1 22 0 3 738 33 0 0 0 chr3L 20137351 20137384 -4406173 + AT_rich Low_complexity Low_complexity 1 33 0 3 738 948 137 279 50 chr3L 20140453 20140727 -4402830 - DMRP1 Unknown Unknown -8 338 2 3 738 21 0 0 0 chr3L 20142624 20142645 -4400912 + AT_rich Low_complexity Low_complexity 1 21 0 3 738 24 0 0 0 chr3L 20143812 20143836 -4399721 + AT_rich Low_complexity Low_complexity 1 24 0 3 738 183 100 0 0 chr3L 20146214 20146244 -4397313 + (TGG)n Simple_repeat Simple_repeat 3 32 0 3 738 217 347 0 0 chr3L 20146737 20146832 -4396725 + (CCG)n Simple_repeat Simple_repeat 3 97 0 3 738 210 91 0 0 chr3L 20150074 20150107 -4393450 + (ATGGTG)n Simple_repeat Simple_repeat 6 38 0 3 738 234 156 0 0 chr3L 20150427 20150472 -4393085 + GA-rich Low_complexity Low_complexity 1 45 0 3 738 26 0 0 0 chr3L 20153586 20153612 -4389945 + AT_rich Low_complexity Low_complexity 1 26 0 3 738 21 82 0 0 chr3L 20155099 20155148 -4388409 + AT_rich Low_complexity Low_complexity 1 49 0 3 738 32 0 0 0 chr3L 20158196 20158228 -4385329 + AT_rich Low_complexity Low_complexity 1 32 0 3 738 201 74 0 0 chr3L 20158439 20158466 -4385091 + (T)n Simple_repeat Simple_repeat 1 27 0 3 738 318 26 0 0 chr3L 20158729 20158768 -4384789 + (TCCA)n Simple_repeat Simple_repeat 1 39 0 3 738 264 250 0 0 chr3L 20160860 20160916 -4382641 + (CCCGAA)n Simple_repeat Simple_repeat 1 56 0 3 738 195 114 0 0 chr3L 20161759 20161794 -4381763 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 3 738 23 33 0 0 chr3L 20162984 20163014 -4380543 + AT_rich Low_complexity Low_complexity 1 30 0 3 738 27 0 0 0 chr3L 20163164 20163191 -4380366 + AT_rich Low_complexity Low_complexity 1 27 0 3 738 216 86 0 0 chr3L 20163518 20163553 -4380004 + (CACCAT)n Simple_repeat Simple_repeat 4 38 0 3 738 243 0 0 0 chr3L 20171018 20171045 -4372512 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 738 22 0 0 0 chr3L 20171308 20171330 -4372227 + AT_rich Low_complexity Low_complexity 1 22 0 3 738 198 0 0 0 chr3L 20172216 20172238 -4371319 + (A)n Simple_repeat Simple_repeat 1 22 0 3 738 21 0 0 0 chr3L 20172986 20173007 -4370550 + AT_rich Low_complexity Low_complexity 1 21 0 3 738 23 33 0 0 chr3L 20173387 20173417 -4370140 + AT_rich Low_complexity Low_complexity 1 30 0 3 738 219 69 0 0 chr3L 20173524 20173553 -4370004 + (CAAAC)n Simple_repeat Simple_repeat 3 31 0 3 738 240 103 52 0 chr3L 20176139 20176197 -4367360 + (CA)n Simple_repeat Simple_repeat 1 61 0 3 738 203 158 0 0 chr3L 20176373 20176411 -4367146 + (CAG)n Simple_repeat Simple_repeat 3 40 0 3 738 21 36 0 0 chr3L 20177829 20177857 -4365700 + AT_rich Low_complexity Low_complexity 1 28 0 3 738 187 54 54 0 chr3L 20179609 20179646 -4363911 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 738 21 0 0 0 chr3L 20183613 20183634 -4359923 + AT_rich Low_complexity Low_complexity 1 21 0 3 739 670 110 0 25 chr3L 20185118 20185239 -4358318 + (TTG)n Simple_repeat Simple_repeat 2 119 0 3 739 180 111 0 0 chr3L 20191975 20192002 -4351555 + (TATG)n Simple_repeat Simple_repeat 2 28 0 3 739 26 0 0 0 chr3L 20197040 20197066 -4346491 + AT_rich Low_complexity Low_complexity 1 26 0 3 739 22 0 0 0 chr3L 20197254 20197276 -4346281 + AT_rich Low_complexity Low_complexity 1 22 0 3 739 228 122 0 0 chr3L 20201997 20202038 -4341519 + (CCA)n Simple_repeat Simple_repeat 1 41 0 3 739 261 128 0 0 chr3L 20205712 20205759 -4337798 + (CTATA)n Simple_repeat Simple_repeat 5 51 0 3 739 2448 4 0 0 chr3L 20205759 20206026 -4337531 - MDG3_LTR LTR Gypsy 0 267 1 3 739 45677 1 0 0 chr3L 20206026 20211013 -4332544 - MDG3_I LTR Gypsy 0 4986 1 3 739 2448 4 0 0 chr3L 20211012 20211279 -4332278 - MDG3_LTR LTR Gypsy 0 267 1 3 739 27 0 0 0 chr3L 20211414 20211441 -4332116 + AT_rich Low_complexity Low_complexity 1 27 0 3 739 650 64 170 0 chr3L 20218498 20218592 -4324965 - DNAREP1_DM LINE Penelope -21 573 464 3 739 295 193 118 24 chr3L 20218598 20218683 -4324874 - DNAREP1_DM LINE Penelope -415 179 87 3 739 34 55 0 0 chr3L 20224362 20224417 -4319140 + AT_rich Low_complexity Low_complexity 1 55 0 3 739 204 40 0 0 chr3L 20226655 20226680 -4316877 + (TA)n Simple_repeat Simple_repeat 1 25 0 3 739 223 204 0 31 chr3L 20228346 20228442 -4315115 + (CTG)n Simple_repeat Simple_repeat 3 95 0 3 739 240 100 0 0 chr3L 20229092 20229132 -4314425 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 3 739 189 74 0 0 chr3L 20229242 20229269 -4314288 + (TCTG)n Simple_repeat Simple_repeat 4 30 0 3 739 183 42 0 0 chr3L 20229445 20229469 -4314088 + (TTG)n Simple_repeat Simple_repeat 1 24 0 3 739 207 114 0 0 chr3L 20229598 20229633 -4313924 + (CTG)n Simple_repeat Simple_repeat 1 35 0 3 739 227 243 29 19 chr3L 20230343 20230448 -4313109 + (CTG)n Simple_repeat Simple_repeat 2 107 0 3 739 241 174 0 58 chr3L 20230448 20230552 -4313005 - ROO_I LTR Pao -7513 743 646 3 739 309 100 0 0 chr3L 20230666 20230716 -4312841 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 739 280 174 52 42 chr3L 20230809 20230905 -4312652 - ROO_I LTR Pao -7513 743 647 3 739 21 0 0 0 chr3L 20231421 20231442 -4312115 + AT_rich Low_complexity Low_complexity 1 21 0 3 739 247 155 14 14 chr3L 20232581 20232653 -4310904 - ROO_I LTR Pao -7544 712 641 3 739 255 159 0 64 chr3L 20232982 20233076 -4310481 - ROO_I LTR Pao -7510 746 659 3 739 21 57 0 0 chr3L 20233892 20233927 -4309630 + AT_rich Low_complexity Low_complexity 1 35 0 3 739 231 103 0 0 chr3L 20234341 20234380 -4309177 + (CA)n Simple_repeat Simple_repeat 1 39 0 3 739 24 67 0 0 chr3L 20235103 20235148 -4308409 + AT_rich Low_complexity Low_complexity 1 45 0 3 739 36 40 0 0 chr3L 20235505 20235555 -4308002 + AT_rich Low_complexity Low_complexity 1 50 0 3 739 253 352 0 0 chr3L 20241029 20241137 -4302420 + (CGG)n Simple_repeat Simple_repeat 2 109 0 3 739 210 256 0 0 chr3L 20241422 20241465 -4302092 + (TATG)n Simple_repeat Simple_repeat 2 44 0 3 739 578 131 131 0 chr3L 20245263 20245370 -4298187 - DMRP1 Unknown Unknown 0 346 226 3 739 694 148 24 8 chr3L 20245420 20245543 -4298014 - DMRP1 Unknown Unknown -218 128 4 3 739 186 103 0 0 chr3L 20245913 20245942 -4297615 + (CA)n Simple_repeat Simple_repeat 1 29 0 3 739 25 31 0 0 chr3L 20246564 20246596 -4296961 + AT_rich Low_complexity Low_complexity 1 32 0 3 739 811 80 322 79 chr3L 20248644 20248896 -4294661 + DMRP1 Unknown Unknown 32 345 -1 3 739 203 240 0 0 chr3L 20249318 20249368 -4294189 + C-rich Low_complexity Low_complexity 4 53 0 3 739 5149 0 0 2 chr3L 20250484 20251043 -4292514 + POGO DNA Pogo 2 559 -1562 3 739 2589 0 143 2 chr3L 20251041 20251551 -4292006 + POGO DNA Pogo 1540 2121 0 3 739 194 33 67 0 chr3L 20252006 20252036 -4291521 + (TATG)n Simple_repeat Simple_repeat 2 33 0 3 739 278 111 0 0 chr3L 20252380 20252425 -4291132 - DNAREP1_DM LINE Penelope -21 573 529 3 739 527 215 129 24 chr3L 20252446 20252570 -4290987 - DNAREP1_DM LINE Penelope -151 443 307 3 739 600 171 0 79 chr3L 20252580 20252720 -4290837 - DNAREP1_DM LINE Penelope -465 129 1 3 739 24 0 0 0 chr3L 20261919 20261943 -4281614 + AT_rich Low_complexity Low_complexity 1 24 0 3 739 27 0 0 0 chr3L 20264559 20264586 -4278971 + AT_rich Low_complexity Low_complexity 1 27 0 3 739 25 31 0 0 chr3L 20265282 20265314 -4278243 + AT_rich Low_complexity Low_complexity 1 32 0 3 739 23 0 0 0 chr3L 20266020 20266043 -4277514 + AT_rich Low_complexity Low_complexity 1 23 0 3 739 21 36 0 0 chr3L 20268962 20268990 -4274567 + AT_rich Low_complexity Low_complexity 1 28 0 3 739 31 44 0 0 chr3L 20272387 20272432 -4271125 + AT_rich Low_complexity Low_complexity 1 45 0 3 739 285 250 86 57 chr3L 20276984 20277124 -4266433 + DNAREP1_DM LINE Penelope 5 148 -446 3 739 326 161 0 67 chr3L 20277116 20277176 -4266381 + DNAREP1_DM LINE Penelope 398 453 -141 3 739 21 36 0 0 chr3L 20279932 20279960 -4263597 + AT_rich Low_complexity Low_complexity 1 28 0 3 739 180 158 0 0 chr3L 20280454 20280492 -4263065 + (TG)n Simple_repeat Simple_repeat 2 39 0 3 739 22 0 0 0 chr3L 20281065 20281087 -4262470 + AT_rich Low_complexity Low_complexity 1 22 0 3 739 32 0 0 0 chr3L 20282849 20282881 -4260676 + AT_rich Low_complexity Low_complexity 1 32 0 3 739 24 32 0 0 chr3L 20283723 20283754 -4259803 + AT_rich Low_complexity Low_complexity 1 31 0 3 739 23 0 0 0 chr3L 20284338 20284361 -4259196 + AT_rich Low_complexity Low_complexity 1 23 0 3 739 26 30 0 0 chr3L 20288853 20288886 -4254671 + AT_rich Low_complexity Low_complexity 1 33 0 3 739 36 0 0 0 chr3L 20290357 20290393 -4253164 + AT_rich Low_complexity Low_complexity 1 36 0 3 739 22 0 0 0 chr3L 20290613 20290635 -4252922 + AT_rich Low_complexity Low_complexity 1 22 0 3 739 23 33 0 0 chr3L 20295312 20295342 -4248215 + AT_rich Low_complexity Low_complexity 1 30 0 3 739 21 0 0 0 chr3L 20296988 20297009 -4246548 + AT_rich Low_complexity Low_complexity 1 21 0 3 739 302 129 0 61 chr3L 20299754 20299820 -4243737 - DNAREP1_DM LINE Penelope -97 497 436 3 739 28 0 0 0 chr3L 20300194 20300222 -4243335 + AT_rich Low_complexity Low_complexity 1 28 0 3 739 209 271 0 0 chr3L 20303561 20303609 -4239948 + (CA)n Simple_repeat Simple_repeat 1 48 0 3 739 26 0 0 0 chr3L 20306547 20306573 -4236984 + AT_rich Low_complexity Low_complexity 1 26 0 3 739 22 35 0 0 chr3L 20307598 20307627 -4235930 + AT_rich Low_complexity Low_complexity 1 29 0 3 739 22 0 0 0 chr3L 20310753 20310775 -4232782 + AT_rich Low_complexity Low_complexity 1 22 0 3 739 23 33 0 0 chr3L 20313243 20313273 -4230284 + AT_rich Low_complexity Low_complexity 1 30 0 3 740 326 169 0 0 chr3L 20316377 20316436 -4227121 + DMRT1B LINE R1 1 59 -5124 3 740 4410 143 249 22 chr3L 20316462 20317528 -4226029 + DMRT1B LINE R1 236 1544 -3639 3 740 573 96 43 0 chr3L 20317530 20317624 -4225933 + DMRT1B LINE R1 1748 1845 -3338 3 740 827 122 0 0 chr3L 20317619 20317750 -4225807 + DMRT1B LINE R1 3322 3452 -1731 3 740 198 167 16 32 chr3L 20317824 20317886 -4225671 + (CATA)n Simple_repeat Simple_repeat 2 62 0 3 740 1304 153 85 44 chr3L 20317892 20318298 -4225259 + QUASIMODO_LTR LTR Gypsy 31 581 -77 3 740 311 91 38 25 chr3L 20318716 20318795 -4224762 + (CAA)n Simple_repeat Simple_repeat 2 81 0 3 740 835 288 32 32 chr3L 20318816 20319311 -4224246 + QUASIMODO_I LTR Gypsy 448 942 -5118 3 740 207 269 0 0 chr3L 20319443 20319510 -4224047 + A-rich Low_complexity Low_complexity 2 68 0 3 740 309 304 62 31 chr3L 20319542 20319831 -4223726 + QUASIMODO_I LTR Gypsy 1204 1501 -4559 3 740 484 231 0 0 chr3L 20319839 20319960 -4223597 + QUASIMODO_I LTR Gypsy 2158 2278 -3782 3 740 918 249 54 6 chr3L 20319967 20320299 -4223258 + QUASIMODO_I LTR Gypsy 2676 3023 -3037 3 740 538 225 1 1 chr3L 20320308 20320477 -4223080 + QUASIMODO_I LTR Gypsy 4273 4536 -1524 3 740 583 234 50 13 chr3L 20320534 20320833 -4222724 + QUASIMODO_I LTR Gypsy 5261 5570 -490 3 740 22 22 0 62 chr3L 20320833 20320881 -4222676 + AT_rich Low_complexity Low_complexity 1 45 0 3 740 2020 20 16 0 chr3L 20320881 20321134 -4222423 - DM176_LTR LTR Gypsy 0 507 251 3 740 2208 7 0 78 chr3L 20321135 20321442 -4222115 - DM176_LTR LTR Gypsy -224 283 1 3 740 32319 5 8 8 chr3L 20321442 20325375 -4218182 - DM176_I LTR Gypsy 0 6420 2489 3 740 16567 14 9 9 chr3L 20325385 20327512 -4216045 - DM176_I LTR Gypsy -4165 2255 130 3 740 437 35 0 0 chr3L 20327523 20327580 -4215977 - DM176_LTR LTR Gypsy -200 307 251 3 740 2196 11 0 78 chr3L 20327581 20327888 -4215669 - DM176_LTR LTR Gypsy -224 283 1 3 740 36 23 0 0 chr3L 20327889 20327932 -4215625 + AT_rich Low_complexity Low_complexity 1 43 0 3 740 4558 22 19 3 chr3L 20327932 20328517 -4215040 - IDEFIX_LTR LTR Gypsy 0 594 1 3 740 11592 25 13 5 chr3L 20328517 20330036 -4213521 - IDEFIX_I LTR Gypsy 0 5628 4098 3 740 2102 11 4 50 chr3L 20330036 20330316 -4213241 + MDG3_LTR LTR Gypsy 1 267 0 3 740 18216 35 1 6 chr3L 20330316 20332684 -4210873 - IDEFIX_I LTR Gypsy -1527 4101 1746 3 740 8869 24 9 1 chr3L 20332697 20333755 -4209802 - IDEFIX_I LTR Gypsy -4561 1067 1 3 740 26 0 0 0 chr3L 20334004 20334030 -4209527 + AT_rich Low_complexity Low_complexity 1 26 0 3 740 4963 22 5 5 chr3L 20334189 20334783 -4208774 - IDEFIX_LTR LTR Gypsy 0 594 1 3 740 247 143 0 0 chr3L 20334751 20334793 -4208764 + BARI1 DNA Tc1 3 44 -1706 3 740 360 228 43 99 chr3L 20334791 20335093 -4208464 + QUASIMODO_I LTR Gypsy 5611 5895 -165 3 740 430 132 0 42 chr3L 20335291 20335362 -4208195 + QUASIMODO_LTR LTR Gypsy 130 197 -461 3 740 356 132 101 109 chr3L 20335365 20335484 -4208073 + QUASIMODO_LTR LTR Gypsy 503 620 -38 3 740 336 185 0 61 chr3L 20337378 20337476 -4206081 + DNAREP1_DM LINE Penelope 241 332 -262 3 740 435 202 150 30 chr3L 20337528 20337661 -4205896 - DNAREP1_DM LINE Penelope -2 592 444 3 740 343 188 10 30 chr3L 20337718 20337817 -4205740 - DNAREP1_DM LINE Penelope -309 285 189 3 740 25 51 0 0 chr3L 20337881 20337920 -4205637 + AT_rich Low_complexity Low_complexity 1 39 0 3 740 207 69 0 0 chr3L 20342617 20342646 -4200911 + (GA)n Simple_repeat Simple_repeat 1 29 0 3 740 180 0 0 0 chr3L 20342646 20342666 -4200891 + (TGAG)n Simple_repeat Simple_repeat 2 21 0 3 740 239 298 0 0 chr3L 20345789 20345873 -4197684 + T-rich Low_complexity Low_complexity 1 84 0 3 740 842 99 92 0 chr3L 20358198 20358329 -4185228 + DMRP1 Unknown Unknown 2 144 -202 3 740 198 0 0 0 chr3L 20358329 20358351 -4185206 + (TC)n Simple_repeat Simple_repeat 2 23 0 3 740 892 64 0 0 chr3L 20358351 20358461 -4185096 + DMRP1 Unknown Unknown 190 299 -47 3 740 22 0 0 0 chr3L 20363148 20363170 -4180387 + AT_rich Low_complexity Low_complexity 1 22 0 3 740 21 36 0 0 chr3L 20369403 20369431 -4174126 + AT_rich Low_complexity Low_complexity 1 28 0 3 740 26 0 0 0 chr3L 20370395 20370421 -4173136 + AT_rich Low_complexity Low_complexity 1 26 0 3 740 22 0 0 0 chr3L 20377379 20377401 -4166156 + AT_rich Low_complexity Low_complexity 1 22 0 3 740 21 36 0 0 chr3L 20382516 20382544 -4161013 + AT_rich Low_complexity Low_complexity 1 28 0 3 740 21 0 0 0 chr3L 20387249 20387270 -4156287 + AT_rich Low_complexity Low_complexity 1 21 0 3 740 183 42 0 0 chr3L 20391050 20391074 -4152483 + (CCG)n Simple_repeat Simple_repeat 2 25 0 3 740 210 95 0 87 chr3L 20391075 20391121 -4152436 + (CACTC)n Simple_repeat Simple_repeat 3 44 0 3 740 191 88 29 0 chr3L 20391859 20391893 -4151664 + (TC)n Simple_repeat Simple_repeat 2 36 0 3 740 236 265 0 20 chr3L 20393268 20393368 -4150189 + ROO_I LTR Pao 640 737 -7519 3 740 30 0 0 0 chr3L 20403015 20403045 -4140512 + AT_rich Low_complexity Low_complexity 1 30 0 3 740 25 0 0 0 chr3L 20406134 20406159 -4137398 + AT_rich Low_complexity Low_complexity 1 25 0 3 740 205 151 0 70 chr3L 20406520 20406577 -4136980 + T-rich Low_complexity Low_complexity 5 57 0 3 740 243 0 0 0 chr3L 20409327 20409354 -4134203 + (A)n Simple_repeat Simple_repeat 1 27 0 3 740 24 0 0 0 chr3L 20410056 20410080 -4133477 + AT_rich Low_complexity Low_complexity 1 24 0 3 740 26 30 0 0 chr3L 20417527 20417560 -4125997 + AT_rich Low_complexity Low_complexity 1 33 0 3 740 22 35 0 0 chr3L 20421236 20421265 -4122292 + AT_rich Low_complexity Low_complexity 1 29 0 3 740 27 0 0 0 chr3L 20424807 20424834 -4118723 + AT_rich Low_complexity Low_complexity 1 27 0 3 740 21 36 0 0 chr3L 20425372 20425400 -4118157 + AT_rich Low_complexity Low_complexity 1 28 0 3 740 22 0 0 0 chr3L 20429202 20429224 -4114333 + AT_rich Low_complexity Low_complexity 1 22 0 3 740 25 51 0 0 chr3L 20435243 20435282 -4108275 + AT_rich Low_complexity Low_complexity 1 39 0 3 740 255 31 0 0 chr3L 20436176 20436208 -4107349 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 740 24 0 0 0 chr3L 20438634 20438658 -4104899 + AT_rich Low_complexity Low_complexity 1 24 0 3 740 209 57 29 0 chr3L 20441343 20441378 -4102179 + (TA)n Simple_repeat Simple_repeat 2 37 0 3 740 21 0 0 0 chr3L 20443769 20443790 -4099767 + AT_rich Low_complexity Low_complexity 1 21 0 3 740 218 153 16 48 chr3L 20446179 20446241 -4097316 + (TTATA)n Simple_repeat Simple_repeat 4 63 0 3 740 24 53 0 0 chr3L 20446253 20446291 -4097266 + AT_rich Low_complexity Low_complexity 1 38 0 3 741 24 0 0 0 chr3L 20447569 20447593 -4095964 + AT_rich Low_complexity Low_complexity 1 24 0 3 741 22 35 0 0 chr3L 20447790 20447819 -4095738 + AT_rich Low_complexity Low_complexity 1 29 0 3 741 22 35 0 0 chr3L 20452782 20452811 -4090746 + AT_rich Low_complexity Low_complexity 1 29 0 3 741 23 33 0 0 chr3L 20452963 20452993 -4090564 + AT_rich Low_complexity Low_complexity 1 30 0 3 741 37 76 0 0 chr3L 20453143 20453222 -4090335 + AT_rich Low_complexity Low_complexity 1 79 0 3 741 23 0 0 0 chr3L 20453294 20453317 -4090240 + AT_rich Low_complexity Low_complexity 1 23 0 3 741 233 139 0 0 chr3L 20456053 20456089 -4087468 - DNAREP1_DM LINE Penelope -535 59 24 3 741 193 85 85 0 chr3L 20458664 20458711 -4084846 + (TTATA)n Simple_repeat Simple_repeat 4 54 0 3 741 24 0 0 0 chr3L 20458937 20458961 -4084596 + AT_rich Low_complexity Low_complexity 1 24 0 3 741 25 51 0 0 chr3L 20463211 20463250 -4080307 + AT_rich Low_complexity Low_complexity 1 39 0 3 741 245 238 16 0 chr3L 20464074 20464137 -4079420 + (CTG)n Simple_repeat Simple_repeat 1 64 0 3 741 25 31 0 0 chr3L 20464285 20464317 -4079240 + AT_rich Low_complexity Low_complexity 1 32 0 3 741 189 0 0 0 chr3L 20465919 20465940 -4077617 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3 741 33 0 0 0 chr3L 20466597 20466630 -4076927 + AT_rich Low_complexity Low_complexity 1 33 0 3 741 30 59 0 0 chr3L 20467818 20467869 -4075688 + AT_rich Low_complexity Low_complexity 1 51 0 3 741 2183 115 62 55 chr3L 20469907 20470311 -4073246 + Gypsy6_LTR LTR Gypsy 1 407 0 3 741 22924 231 21 23 chr3L 20470327 20477043 -4066514 + Gypsy6_I LTR Gypsy 27 7012 0 3 741 2183 113 57 62 chr3L 20477045 20477450 -4066107 + Gypsy6_LTR LTR Gypsy 1 403 -4 3 741 325 56 89 0 chr3L 20479329 20479419 -4064138 + (TA)n Simple_repeat Simple_repeat 2 99 0 3 741 231 61 0 0 chr3L 20479709 20479742 -4063815 + (TCTG)n Simple_repeat Simple_repeat 1 33 0 3 741 635 210 151 97 chr3L 20480795 20481001 -4062556 - DNAREP1_DM LINE Penelope 0 594 378 3 741 262 200 0 0 chr3L 20481005 20481055 -4062502 - DNAREP1_DM LINE Penelope -544 50 1 3 741 399 17 50 0 chr3L 20481634 20481694 -4061863 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 741 280 108 0 0 chr3L 20483408 20483445 -4060112 - DNAREP1_DM LINE Penelope -1 593 557 3 741 23 0 0 0 chr3L 20483815 20483838 -4059719 + AT_rich Low_complexity Low_complexity 1 23 0 3 741 180 179 0 0 chr3L 20485424 20485463 -4058094 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 741 31 44 0 0 chr3L 20485708 20485753 -4057804 + AT_rich Low_complexity Low_complexity 1 45 0 3 741 240 35 0 0 chr3L 20486447 20486476 -4057081 + (TTA)n Simple_repeat Simple_repeat 2 30 0 3 741 24 0 0 0 chr3L 20486760 20486784 -4056773 + AT_rich Low_complexity Low_complexity 1 24 0 3 741 27 0 0 0 chr3L 20490242 20490269 -4053288 + AT_rich Low_complexity Low_complexity 1 27 0 3 741 256 275 7 30 chr3L 20490969 20491104 -4052453 + GA-rich Low_complexity Low_complexity 2 133 0 3 741 24 0 0 0 chr3L 20491802 20491826 -4051731 + AT_rich Low_complexity Low_complexity 1 24 0 3 741 1427 159 86 24 chr3L 20491941 20492231 -4051326 - DMRP1 Unknown Unknown -11 335 28 3 741 285 263 40 0 chr3L 20492314 20492390 -4051167 - DNAREP1_DM LINE Penelope -515 79 1 3 741 2198 132 91 32 chr3L 20494660 20495331 -4048226 + DNAREP1_DM LINE Penelope 2 593 -1 3 741 294 204 42 31 chr3L 20495274 20495370 -4048187 - P_DG DNA P -75 2813 2717 3 741 431 165 192 80 chr3L 20495589 20495714 -4047843 - DNAREP1_DM LINE Penelope -104 490 352 3 741 491 253 24 54 chr3L 20495724 20495891 -4047666 - DNAREP1_DM LINE Penelope -432 162 1 3 741 784 233 66 20 chr3L 20496276 20496473 -4047084 - DNAREP1_DM LINE Penelope -113 481 276 3 741 388 192 0 0 chr3L 20496479 20496552 -4047005 - DNAREP1_DM LINE Penelope -507 87 15 3 741 23 33 0 0 chr3L 20498884 20498914 -4044643 + AT_rich Low_complexity Low_complexity 1 30 0 3 741 189 74 0 0 chr3L 20503816 20503843 -4039714 + (CAG)n Simple_repeat Simple_repeat 2 28 0 3 741 183 107 35 35 chr3L 20504160 20504218 -4039339 + A-rich Low_complexity Low_complexity 2 59 0 3 741 39 22 0 0 chr3L 20504480 20504526 -4039031 + AT_rich Low_complexity Low_complexity 1 46 0 3 741 25 51 0 0 chr3L 20507701 20507740 -4035817 + AT_rich Low_complexity Low_complexity 1 39 0 3 741 28 29 0 0 chr3L 20508114 20508149 -4035408 + AT_rich Low_complexity Low_complexity 1 35 0 3 741 26 30 0 0 chr3L 20510203 20510236 -4033321 + AT_rich Low_complexity Low_complexity 1 33 0 3 741 220 241 0 49 chr3L 20510542 20510603 -4032954 + A-rich Low_complexity Low_complexity 6 63 0 3 741 251 270 0 0 chr3L 20510630 20510704 -4032853 + CT-rich Low_complexity Low_complexity 2 75 0 3 741 317 75 19 0 chr3L 20515548 20515601 -4027956 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 741 209 146 0 77 chr3L 20515943 20515995 -4027562 + GA-rich Low_complexity Low_complexity 1 48 0 3 741 33 0 0 0 chr3L 20517810 20517843 -4025714 + AT_rich Low_complexity Low_complexity 1 33 0 3 741 35 0 0 0 chr3L 20518055 20518090 -4025467 + AT_rich Low_complexity Low_complexity 1 35 0 3 741 216 0 0 0 chr3L 20518327 20518351 -4025206 + (TATAA)n Simple_repeat Simple_repeat 4 27 0 3 741 21 0 0 0 chr3L 20521146 20521167 -4022390 + AT_rich Low_complexity Low_complexity 1 21 0 3 741 25 0 0 0 chr3L 20526399 20526424 -4017133 + AT_rich Low_complexity Low_complexity 1 25 0 3 741 919 125 41 127 chr3L 20528943 20529163 -4014394 - DNAREP1_DM LINE Penelope 0 594 394 3 741 389 94 15 45 chr3L 20529169 20529236 -4014321 - DNAREP1_DM LINE Penelope -529 65 1 3 741 180 97 0 0 chr3L 20529719 20529750 -4013807 + (A)n Simple_repeat Simple_repeat 1 31 0 3 741 24 77 0 0 chr3L 20535196 20535248 -4008309 + AT_rich Low_complexity Low_complexity 1 52 0 3 741 207 0 0 0 chr3L 20535513 20535536 -4008021 + (CACTC)n Simple_repeat Simple_repeat 2 24 0 3 741 22 0 0 0 chr3L 20535891 20535913 -4007644 + AT_rich Low_complexity Low_complexity 1 22 0 3 741 198 0 0 0 chr3L 20536097 20536119 -4007438 + (T)n Simple_repeat Simple_repeat 1 22 0 3 741 23 68 0 0 chr3L 20536604 20536648 -4006909 + AT_rich Low_complexity Low_complexity 1 44 0 3 741 22 56 0 0 chr3L 20537622 20537658 -4005899 + AT_rich Low_complexity Low_complexity 1 36 0 3 741 22 88 0 0 chr3L 20537756 20537813 -4005744 + AT_rich Low_complexity Low_complexity 1 57 0 3 741 24 53 0 0 chr3L 20538095 20538133 -4005424 + AT_rich Low_complexity Low_complexity 1 38 0 3 741 229 208 0 0 chr3L 20538438 20538491 -4005066 + A-rich Low_complexity Low_complexity 1 53 0 3 741 249 33 0 0 chr3L 20541208 20541238 -4002319 + (TA)n Simple_repeat Simple_repeat 2 31 0 3 741 216 143 0 0 chr3L 20541509 20541551 -4002006 + (T)n Simple_repeat Simple_repeat 1 42 0 3 741 192 97 0 0 chr3L 20547608 20547639 -3995918 + (CATCC)n Simple_repeat Simple_repeat 5 35 0 3 741 23 0 0 0 chr3L 20548108 20548131 -3995426 + AT_rich Low_complexity Low_complexity 1 23 0 3 741 25 31 0 0 chr3L 20548565 20548597 -3994960 + AT_rich Low_complexity Low_complexity 1 32 0 3 741 21 0 0 0 chr3L 20550031 20550052 -3993505 + GC_rich Low_complexity Low_complexity 1 21 0 3 741 189 0 0 0 chr3L 20555373 20555394 -3988163 + (CTCG)n Simple_repeat Simple_repeat 3 23 0 3 741 198 0 0 0 chr3L 20555394 20555415 -3988142 + (TTGG)n Simple_repeat Simple_repeat 1 22 0 3 741 230 218 18 73 chr3L 20557349 20557458 -3986099 - ROO_I LTR Pao -7513 743 641 3 741 287 119 0 0 chr3L 20557807 20557849 -3985708 + DNAREP1_DM LINE Penelope 21 62 -532 3 741 27 49 0 0 chr3L 20560003 20560044 -3983513 + AT_rich Low_complexity Low_complexity 1 41 0 3 741 246 136 0 0 chr3L 20560377 20560421 -3983136 + (CGATG)n Simple_repeat Simple_repeat 2 45 0 3 741 293 222 0 36 chr3L 20561241 20561325 -3982232 + (CGGT)n Simple_repeat Simple_repeat 3 83 0 3 741 189 0 0 0 chr3L 20561462 20561483 -3982074 + (TATCG)n Simple_repeat Simple_repeat 1 21 0 3 741 186 43 0 0 chr3L 20564299 20564322 -3979235 + (GTTTG)n Simple_repeat Simple_repeat 5 27 0 3 741 22 56 0 0 chr3L 20564535 20564571 -3978986 + AT_rich Low_complexity Low_complexity 1 36 0 3 741 24 0 0 0 chr3L 20564781 20564805 -3978752 + AT_rich Low_complexity Low_complexity 1 24 0 3 741 36 40 0 0 chr3L 20565632 20565682 -3977875 + AT_rich Low_complexity Low_complexity 1 50 0 3 741 25 0 0 0 chr3L 20566768 20566793 -3976764 + AT_rich Low_complexity Low_complexity 1 25 0 3 741 22 80 0 0 chr3L 20567015 20567065 -3976492 + AT_rich Low_complexity Low_complexity 1 50 0 3 741 192 163 0 0 chr3L 20567612 20567655 -3975902 + (CAG)n Simple_repeat Simple_repeat 1 43 0 3 741 180 111 0 0 chr3L 20568128 20568155 -3975402 + (ATG)n Simple_repeat Simple_repeat 2 28 0 3 741 36 77 0 0 chr3L 20569197 20569275 -3974282 + AT_rich Low_complexity Low_complexity 1 78 0 3 741 26 0 0 0 chr3L 20572268 20572294 -3971263 + AT_rich Low_complexity Low_complexity 1 26 0 3 741 222 128 0 0 chr3L 20572608 20572647 -3970910 + (CATCT)n Simple_repeat Simple_repeat 3 41 0 3 741 28 29 0 0 chr3L 20573105 20573140 -3970417 + AT_rich Low_complexity Low_complexity 1 35 0 3 741 348 178 0 0 chr3L 20576961 20577034 -3966523 + (TGG)n Simple_repeat Simple_repeat 1 73 0 3 741 28 29 0 0 chr3L 20577159 20577194 -3966363 + AT_rich Low_complexity Low_complexity 1 35 0 3 741 31 76 0 0 chr3L 20577850 20577916 -3965641 + AT_rich Low_complexity Low_complexity 1 66 0 3 741 29 0 0 0 chr3L 20577927 20577956 -3965601 + AT_rich Low_complexity Low_complexity 1 29 0 3 742 257 187 13 0 chr3L 20578754 20578829 -3964728 + (CAGTT)n Simple_repeat Simple_repeat 1 76 0 3 742 186 94 0 86 chr3L 20579104 20579174 -3964383 + (TGG)n Simple_repeat Simple_repeat 2 65 0 3 742 219 36 0 0 chr3L 20579642 20579670 -3963887 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 3 742 279 0 0 0 chr3L 20580304 20580335 -3963222 + (GATTG)n Simple_repeat Simple_repeat 3 33 0 3 742 21 57 0 0 chr3L 20581249 20581284 -3962273 + AT_rich Low_complexity Low_complexity 1 35 0 3 742 232 259 0 0 chr3L 20581525 20581579 -3961978 + (TTG)n Simple_repeat Simple_repeat 1 54 0 3 742 183 225 0 0 chr3L 20582403 20582474 -3961083 + (CAG)n Simple_repeat Simple_repeat 3 73 0 3 742 4404 4 2 2 chr3L 20583218 20583700 -3959857 + DM412B_LTR LTR Gypsy 1 482 -89 3 742 246 62 0 0 chr3L 20586251 20586283 -3957274 + (AGTTG)n Simple_repeat Simple_repeat 1 32 0 3 742 404 37 19 0 chr3L 20587651 20587705 -3955852 + (TCTG)n Simple_repeat Simple_repeat 2 56 0 3 742 25 0 0 0 chr3L 20588272 20588297 -3955260 + AT_rich Low_complexity Low_complexity 1 25 0 3 742 22 35 0 0 chr3L 20589329 20589358 -3954199 + AT_rich Low_complexity Low_complexity 1 29 0 3 742 237 209 0 0 chr3L 20589749 20589792 -3953765 + (TCCG)n Simple_repeat Simple_repeat 3 45 0 3 742 205 118 19 19 chr3L 20590759 20590811 -3952746 + T-rich Low_complexity Low_complexity 3 54 0 3 742 258 207 0 0 chr3L 20591390 20591448 -3952109 + (TTA)n Simple_repeat Simple_repeat 2 59 0 3 742 252 0 0 0 chr3L 20592410 20592438 -3951119 + (TCC)n Simple_repeat Simple_repeat 1 28 0 3 742 261 119 0 0 chr3L 20593686 20593728 -3949829 + (CTG)n Simple_repeat Simple_repeat 3 44 0 3 742 255 203 15 15 chr3L 20594162 20594227 -3949330 + A-rich Low_complexity Low_complexity 5 69 0 3 742 23 0 0 0 chr3L 20594602 20594625 -3948932 + AT_rich Low_complexity Low_complexity 1 23 0 3 742 21 0 0 0 chr3L 20597368 20597389 -3946168 + AT_rich Low_complexity Low_complexity 1 21 0 3 742 29 0 0 0 chr3L 20598733 20598762 -3944795 + AT_rich Low_complexity Low_complexity 1 29 0 3 742 205 200 0 0 chr3L 20600800 20600840 -3942717 + (ATG)n Simple_repeat Simple_repeat 3 42 0 3 742 32 0 0 0 chr3L 20601533 20601565 -3941992 + AT_rich Low_complexity Low_complexity 1 32 0 3 742 214 169 15 15 chr3L 20601762 20601828 -3941729 + (TTG)n Simple_repeat Simple_repeat 1 66 0 3 742 257 233 32 32 chr3L 20604068 20604161 -3939396 + (TTTG)n Simple_repeat Simple_repeat 3 95 0 3 742 21 0 0 0 chr3L 20606083 20606104 -3937453 + AT_rich Low_complexity Low_complexity 1 21 0 3 742 180 0 0 0 chr3L 20608020 20608040 -3935517 + (A)n Simple_repeat Simple_repeat 1 20 0 3 742 24 0 0 0 chr3L 20612018 20612042 -3931515 + AT_rich Low_complexity Low_complexity 1 24 0 3 742 29 0 0 0 chr3L 20614446 20614475 -3929082 + AT_rich Low_complexity Low_complexity 1 29 0 3 742 22 35 0 0 chr3L 20616825 20616854 -3926703 + AT_rich Low_complexity Low_complexity 1 29 0 3 742 22 0 0 0 chr3L 20617540 20617562 -3925995 + AT_rich Low_complexity Low_complexity 1 22 0 3 742 26 30 0 0 chr3L 20618434 20618467 -3925090 + AT_rich Low_complexity Low_complexity 1 33 0 3 742 24 67 0 0 chr3L 20619599 20619644 -3923913 + AT_rich Low_complexity Low_complexity 1 45 0 3 742 22 0 0 0 chr3L 20620874 20620896 -3922661 + AT_rich Low_complexity Low_complexity 1 22 0 3 742 201 121 0 0 chr3L 20630929 20630962 -3912595 + (CAG)n Simple_repeat Simple_repeat 3 35 0 3 742 21 36 0 0 chr3L 20634058 20634086 -3909471 + AT_rich Low_complexity Low_complexity 1 28 0 3 742 408 192 178 70 chr3L 20634152 20634309 -3909248 + DNAREP1_DM LINE Penelope 314 487 -107 3 742 37 0 0 0 chr3L 20635419 20635456 -3908101 + AT_rich Low_complexity Low_complexity 1 37 0 3 742 21 0 0 0 chr3L 20637961 20637982 -3905575 + AT_rich Low_complexity Low_complexity 1 21 0 3 742 25 0 0 0 chr3L 20641461 20641486 -3902071 + AT_rich Low_complexity Low_complexity 1 25 0 3 742 266 77 58 0 chr3L 20644294 20644346 -3899211 + (GTATG)n Simple_repeat Simple_repeat 4 58 0 3 742 27 29 0 0 chr3L 20645672 20645706 -3897851 + AT_rich Low_complexity Low_complexity 1 34 0 3 742 21 36 0 0 chr3L 20652049 20652077 -3891480 + AT_rich Low_complexity Low_complexity 1 28 0 3 742 217 216 0 0 chr3L 20652101 20652152 -3891405 + CT-rich Low_complexity Low_complexity 1 51 0 3 742 983 126 172 6 chr3L 20652548 20652909 -3890648 + DNAREP1_DM LINE Penelope 41 594 0 3 742 29 47 0 0 chr3L 20661736 20661779 -3881778 + AT_rich Low_complexity Low_complexity 1 43 0 3 742 23 0 0 0 chr3L 20661915 20661938 -3881619 + AT_rich Low_complexity Low_complexity 1 23 0 3 742 183 146 0 0 chr3L 20664196 20664237 -3879320 + (A)n Simple_repeat Simple_repeat 1 41 0 3 742 212 233 0 0 chr3L 20665089 20665132 -3878425 + (TTCGG)n Simple_repeat Simple_repeat 2 44 0 3 742 21 36 0 0 chr3L 20667328 20667356 -3876201 + AT_rich Low_complexity Low_complexity 1 28 0 3 742 25 0 0 0 chr3L 20667791 20667816 -3875741 + AT_rich Low_complexity Low_complexity 1 25 0 3 742 180 0 0 0 chr3L 20671325 20671345 -3872212 + (CAGGG)n Simple_repeat Simple_repeat 5 24 0 3 742 201 292 31 10 chr3L 20675673 20675770 -3867787 + (CCCGAA)n Simple_repeat Simple_repeat 4 102 0 3 742 238 221 12 38 chr3L 20676595 20676675 -3866882 + ROO_I LTR Pao 657 734 -7522 3 742 189 0 0 0 chr3L 20686778 20686799 -3856758 + (CTG)n Simple_repeat Simple_repeat 1 21 0 3 742 39 0 0 0 chr3L 20689461 20689500 -3854057 + AT_rich Low_complexity Low_complexity 1 39 0 3 742 22 35 0 0 chr3L 20689537 20689566 -3853991 + AT_rich Low_complexity Low_complexity 1 29 0 3 742 21 0 0 0 chr3L 20696428 20696449 -3847108 + AT_rich Low_complexity Low_complexity 1 21 0 3 742 206 260 13 40 chr3L 20698036 20698112 -3845445 + (CCCGAA)n Simple_repeat Simple_repeat 5 78 0 3 742 35 63 0 0 chr3L 20699421 20699484 -3844073 + AT_rich Low_complexity Low_complexity 1 63 0 3 742 24 0 0 0 chr3L 20700572 20700596 -3842961 + AT_rich Low_complexity Low_complexity 1 24 0 3 742 21 0 0 0 chr3L 20704634 20704655 -3838902 + AT_rich Low_complexity Low_complexity 1 21 0 3 742 183 42 0 0 chr3L 20704934 20704958 -3838599 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 3 742 523 125 0 0 chr3L 20704958 20705037 -3838520 - BS LINE Jockey -27 5099 5021 3 742 228 167 212 0 chr3L 20705110 20705176 -3838381 - DNAREP1_DM LINE Penelope -41 553 474 3 742 2971 64 2 35 chr3L 20705236 20705639 -3837918 - BS3_DM LINE Jockey -2 1788 1399 3 742 1076 126 165 0 chr3L 20705656 20705862 -3837695 - DNAREP1_DM LINE Penelope 0 594 355 3 743 21 0 0 0 chr3L 20709603 20709624 -3833933 + AT_rich Low_complexity Low_complexity 1 21 0 3 743 22 0 0 0 chr3L 20710801 20710823 -3832734 + AT_rich Low_complexity Low_complexity 1 22 0 3 743 25 31 0 0 chr3L 20710977 20711009 -3832548 + AT_rich Low_complexity Low_complexity 1 32 0 3 743 219 125 0 0 chr3L 20711514 20711554 -3832003 + (A)n Simple_repeat Simple_repeat 1 40 0 3 743 27 0 0 0 chr3L 20712702 20712729 -3830828 + AT_rich Low_complexity Low_complexity 1 27 0 3 743 25 51 0 0 chr3L 20712768 20712807 -3830750 + AT_rich Low_complexity Low_complexity 1 39 0 3 743 201 74 0 0 chr3L 20715973 20716000 -3827557 + (CAT)n Simple_repeat Simple_repeat 2 28 0 3 743 387 60 0 0 chr3L 20717833 20717883 -3825674 + (CAGAC)n Simple_repeat Simple_repeat 2 51 0 3 743 31 82 0 0 chr3L 20718637 20718710 -3824847 + AT_rich Low_complexity Low_complexity 1 73 0 3 743 222 37 0 0 chr3L 20721368 20721395 -3822162 + (TCCG)n Simple_repeat Simple_repeat 2 28 0 3 743 24 0 0 0 chr3L 20722791 20722815 -3820742 + AT_rich Low_complexity Low_complexity 1 24 0 3 743 22 35 0 0 chr3L 20725564 20725593 -3817964 + AT_rich Low_complexity Low_complexity 1 29 0 3 743 302 109 0 35 chr3L 20727229 20727286 -3816271 + (CTG)n Simple_repeat Simple_repeat 1 55 0 3 743 201 176 0 0 chr3L 20730613 20730647 -3812910 + (TA)n Simple_repeat Simple_repeat 1 34 0 3 743 22 0 0 0 chr3L 20730667 20730689 -3812868 + AT_rich Low_complexity Low_complexity 1 22 0 3 743 37 0 0 0 chr3L 20732601 20732638 -3810919 + AT_rich Low_complexity Low_complexity 1 37 0 3 743 200 195 0 0 chr3L 20733027 20733068 -3810489 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 3 743 180 77 0 0 chr3L 20733343 20733369 -3810188 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 743 225 0 0 0 chr3L 20733506 20733531 -3810026 + (T)n Simple_repeat Simple_repeat 1 25 0 3 743 23 54 0 0 chr3L 20737538 20737575 -3805982 + AT_rich Low_complexity Low_complexity 1 37 0 3 743 23 0 0 0 chr3L 20738282 20738305 -3805252 + AT_rich Low_complexity Low_complexity 1 23 0 3 743 239 163 41 0 chr3L 20740234 20740283 -3803274 - DM1731_LTR LTR Copia -209 127 77 3 743 201 139 0 0 chr3L 20741403 20741446 -3802111 + (TA)n Simple_repeat Simple_repeat 1 43 0 3 743 26 30 0 0 chr3L 20743239 20743272 -3800285 + AT_rich Low_complexity Low_complexity 1 33 0 3 743 40 87 0 0 chr3L 20744211 20744314 -3799243 + AT_rich Low_complexity Low_complexity 1 103 0 3 743 26 50 0 0 chr3L 20744951 20744991 -3798566 + AT_rich Low_complexity Low_complexity 1 40 0 3 743 354 123 62 0 chr3L 20746643 20746708 -3796849 - DNAREP1_DM LINE Penelope -13 581 513 3 743 226 167 0 0 chr3L 20746719 20746755 -3796802 - DNAREP1_DM LINE Penelope -175 419 384 3 743 275 183 58 47 chr3L 20746780 20746866 -3796691 - DNAREP1_DM LINE Penelope -474 120 34 3 743 226 167 0 0 chr3L 20747240 20747276 -3796281 - DNAREP1_DM LINE Penelope -175 419 384 3 743 275 183 58 47 chr3L 20747301 20747387 -3796170 - DNAREP1_DM LINE Penelope -474 120 34 3 743 226 167 0 0 chr3L 20747762 20747798 -3795759 - DNAREP1_DM LINE Penelope -175 419 384 3 743 275 183 58 47 chr3L 20747823 20747909 -3795648 - DNAREP1_DM LINE Penelope -474 120 34 3 743 22 35 0 0 chr3L 20749020 20749049 -3794508 + AT_rich Low_complexity Low_complexity 1 29 0 3 743 232 97 0 0 chr3L 20749459 20749490 -3794067 - DNAREP1_DM LINE Penelope -105 489 459 3 743 30 27 0 0 chr3L 20749675 20749712 -3793845 + AT_rich Low_complexity Low_complexity 1 37 0 3 743 28 29 0 0 chr3L 20751564 20751599 -3791958 + AT_rich Low_complexity Low_complexity 1 35 0 3 743 192 216 0 0 chr3L 20754666 20754717 -3788840 + (TA)n Simple_repeat Simple_repeat 2 52 0 3 743 216 67 0 0 chr3L 20756739 20756769 -3786788 + (T)n Simple_repeat Simple_repeat 1 30 0 3 743 331 239 0 0 chr3L 20757805 20757876 -3785681 + DNAREP1_DM LINE Penelope 524 594 0 3 743 21 0 0 0 chr3L 20758985 20759006 -3784551 + AT_rich Low_complexity Low_complexity 1 21 0 3 743 180 0 0 0 chr3L 20764395 20764415 -3779142 + (A)n Simple_repeat Simple_repeat 1 20 0 3 743 222 160 0 0 chr3L 20765773 20765823 -3777734 + A-rich Low_complexity Low_complexity 5 54 0 3 743 32 26 0 0 chr3L 20784274 20784313 -3759244 + AT_rich Low_complexity Low_complexity 1 39 0 3 743 23 54 0 0 chr3L 20788822 20788859 -3754698 + AT_rich Low_complexity Low_complexity 1 37 0 3 743 29 60 0 0 chr3L 20790208 20790258 -3753299 + AT_rich Low_complexity Low_complexity 1 50 0 3 743 33 25 0 0 chr3L 20791607 20791647 -3751910 + AT_rich Low_complexity Low_complexity 1 40 0 3 743 21 36 0 0 chr3L 20799790 20799818 -3743739 + AT_rich Low_complexity Low_complexity 1 28 0 3 743 23 54 0 0 chr3L 20800006 20800043 -3743514 + AT_rich Low_complexity Low_complexity 1 37 0 3 743 302 67 22 0 chr3L 20800185 20800230 -3743327 + (TA)n Simple_repeat Simple_repeat 2 47 0 3 743 228 216 0 0 chr3L 20801761 20801812 -3741745 - ROO_I LTR Pao -7529 727 677 3 743 21 57 0 0 chr3L 20811032 20811067 -3732490 + AT_rich Low_complexity Low_complexity 1 35 0 3 743 252 128 170 0 chr3L 20811328 20811375 -3732182 - DNAREP1_DM LINE Penelope -112 482 428 3 743 303 200 43 0 chr3L 20811399 20811469 -3732088 - DNAREP1_DM LINE Penelope -521 73 1 3 743 23 0 0 0 chr3L 20812829 20812852 -3730705 + AT_rich Low_complexity Low_complexity 1 23 0 3 743 24 32 0 0 chr3L 20812948 20812979 -3730578 + AT_rich Low_complexity Low_complexity 1 31 0 3 743 13313 126 230 30 chr3L 20814432 20817839 -3725718 - FB4_DM DNA Tc1 0 4089 1 3 743 27 62 0 0 chr3L 20821663 20821711 -3721846 + AT_rich Low_complexity Low_complexity 1 48 0 3 743 378 91 0 18 chr3L 20823433 20823489 -3720068 - DNAREP1_DM LINE Penelope -539 55 1 3 743 256 247 11 21 chr3L 20827191 20827286 -3716271 + (CAA)n Simple_repeat Simple_repeat 1 94 0 3 743 21 36 0 0 chr3L 20827975 20828003 -3715554 + AT_rich Low_complexity Low_complexity 1 28 0 3 743 27 0 0 0 chr3L 20833145 20833172 -3710385 + AT_rich Low_complexity Low_complexity 1 27 0 3 743 23 54 0 0 chr3L 20834907 20834944 -3708613 + AT_rich Low_complexity Low_complexity 1 37 0 3 743 268 83 0 40 chr3L 20837767 20837817 -3705740 + (ATTTG)n Simple_repeat Simple_repeat 2 49 0 3 744 208 253 12 48 chr3L 20841627 20841710 -3701847 + GA-rich Low_complexity Low_complexity 5 84 0 3 744 776 152 209 0 chr3L 20846113 20846290 -3697267 - DNAREP1_DM LINE Penelope 0 594 381 3 744 205 203 17 0 chr3L 20847438 20847497 -3696060 + (TAA)n Simple_repeat Simple_repeat 1 60 0 3 744 303 140 0 0 chr3L 20847880 20847930 -3695627 + (CTG)n Simple_repeat Simple_repeat 1 50 0 3 744 201 74 0 0 chr3L 20849669 20849696 -3693861 + (TA)n Simple_repeat Simple_repeat 2 28 0 3 744 21 0 0 0 chr3L 20850117 20850138 -3693419 + AT_rich Low_complexity Low_complexity 1 21 0 3 744 23 54 0 0 chr3L 20851114 20851151 -3692406 + AT_rich Low_complexity Low_complexity 1 37 0 3 744 307 160 387 0 chr3L 20851391 20851497 -3692060 + DNAREP1_DM LINE Penelope 375 521 -73 3 744 303 238 0 0 chr3L 20853117 20853197 -3690360 - ROO_I LTR Pao -7524 732 653 3 744 25 31 0 0 chr3L 20858656 20858688 -3684869 + AT_rich Low_complexity Low_complexity 1 32 0 3 744 23 54 0 0 chr3L 20859730 20859767 -3683790 + AT_rich Low_complexity Low_complexity 1 37 0 3 744 192 97 0 0 chr3L 20860590 20860621 -3682936 + (TG)n Simple_repeat Simple_repeat 1 31 0 3 744 200 295 0 0 chr3L 20862615 20862693 -3680864 + GA-rich Low_complexity Low_complexity 6 83 0 3 744 203 146 24 0 chr3L 20865015 20865056 -3678501 + (CAA)n Simple_repeat Simple_repeat 1 42 0 3 744 23 68 0 0 chr3L 20865794 20865838 -3677719 + AT_rich Low_complexity Low_complexity 1 44 0 3 744 27 29 0 0 chr3L 20868168 20868202 -3675355 + AT_rich Low_complexity Low_complexity 1 34 0 3 744 234 0 0 0 chr3L 20868202 20868228 -3675329 + (TA)n Simple_repeat Simple_repeat 2 27 0 3 744 24 32 0 0 chr3L 20868809 20868840 -3674717 + AT_rich Low_complexity Low_complexity 1 31 0 3 744 24 77 0 0 chr3L 20871059 20871111 -3672446 + AT_rich Low_complexity Low_complexity 1 52 0 3 744 23 0 0 0 chr3L 20873512 20873535 -3670022 + AT_rich Low_complexity Low_complexity 1 23 0 3 744 202 135 0 26 chr3L 20877982 20878020 -3665537 + (TG)n Simple_repeat Simple_repeat 2 38 0 3 744 24 53 0 0 chr3L 20878163 20878201 -3665356 + AT_rich Low_complexity Low_complexity 1 38 0 3 744 186 71 0 0 chr3L 20880536 20880564 -3662993 + (TG)n Simple_repeat Simple_repeat 1 28 0 3 744 26 50 0 0 chr3L 20881322 20881362 -3662195 + AT_rich Low_complexity Low_complexity 1 40 0 3 744 195 42 0 0 chr3L 20883353 20883377 -3660180 + (CATA)n Simple_repeat Simple_repeat 3 26 0 3 744 25 0 0 0 chr3L 20885453 20885478 -3658079 + AT_rich Low_complexity Low_complexity 1 25 0 3 744 34 24 0 0 chr3L 20886862 20886903 -3656654 + AT_rich Low_complexity Low_complexity 1 41 0 3 744 2418 28 46 0 chr3L 20888397 20888682 -3654875 + Invader3_LTR LTR Gypsy 1 298 0 3 744 23 68 0 0 chr3L 20888828 20888872 -3654685 + AT_rich Low_complexity Low_complexity 1 44 0 3 744 411 218 33 42 chr3L 20888872 20889005 -3654552 - DNAREP1_DM LINE Penelope -106 488 372 3 744 444 37 0 0 chr3L 20892157 20892211 -3651346 + (TA)n Simple_repeat Simple_repeat 2 55 0 3 744 22 0 0 0 chr3L 20893478 20893500 -3650057 + AT_rich Low_complexity Low_complexity 1 22 0 3 744 1238 102 66 10 chr3L 20898192 20898389 -3645168 + DNAREP1_DM LINE Penelope 6 213 -381 3 744 304 255 57 0 chr3L 20898392 20898414 -3645143 - P_DG DNA P -26 2862 2755 3 744 509 150 0 0 chr3L 20898414 20898494 -3645063 + DNAREP1_DM LINE Penelope 515 594 0 3 744 180 0 0 0 chr3L 20899052 20899072 -3644485 + (GGA)n Simple_repeat Simple_repeat 1 20 0 3 744 363 348 0 0 chr3L 20899094 20899235 -3644322 + (CGG)n Simple_repeat Simple_repeat 2 142 0 3 744 27 0 0 0 chr3L 20900267 20900294 -3643263 + AT_rich Low_complexity Low_complexity 1 27 0 3 744 27 0 0 0 chr3L 20902443 20902470 -3641087 + AT_rich Low_complexity Low_complexity 1 27 0 3 744 220 27 54 0 chr3L 20907680 20907717 -3635840 + (TA)n Simple_repeat Simple_repeat 2 40 0 3 744 255 227 27 0 chr3L 20908811 20908886 -3634671 + (CTG)n Simple_repeat Simple_repeat 3 79 0 3 744 27 0 0 0 chr3L 20917598 20917625 -3625932 + AT_rich Low_complexity Low_complexity 1 27 0 3 744 23 0 0 0 chr3L 20919738 20919761 -3623796 + AT_rich Low_complexity Low_complexity 1 23 0 3 744 254 196 20 0 chr3L 20920548 20920599 -3622958 - ROO_I LTR Pao -7538 718 667 3 744 21 0 0 0 chr3L 20922911 20922932 -3620625 + AT_rich Low_complexity Low_complexity 1 21 0 3 744 32 0 0 0 chr3L 20923694 20923726 -3619831 + AT_rich Low_complexity Low_complexity 1 32 0 3 744 23 0 0 0 chr3L 20924979 20925002 -3618555 + AT_rich Low_complexity Low_complexity 1 23 0 3 744 37 52 0 0 chr3L 20925032 20925090 -3618467 + AT_rich Low_complexity Low_complexity 1 58 0 3 744 264 59 0 0 chr3L 20926852 20926886 -3616671 + (CAG)n Simple_repeat Simple_repeat 2 35 0 3 744 240 35 0 0 chr3L 20927620 20927649 -3615908 + (CATCC)n Simple_repeat Simple_repeat 5 33 0 3 744 270 0 0 0 chr3L 20928857 20928887 -3614670 + (CCG)n Simple_repeat Simple_repeat 2 31 0 3 744 186 43 0 0 chr3L 20929548 20929571 -3613986 + (T)n Simple_repeat Simple_repeat 1 23 0 3 744 25 0 0 0 chr3L 20929693 20929718 -3613839 + AT_rich Low_complexity Low_complexity 1 25 0 3 744 253 241 12 35 chr3L 20930791 20930877 -3612680 + (CTG)n Simple_repeat Simple_repeat 3 86 0 3 744 219 88 0 0 chr3L 20933146 20933180 -3610377 + (TTGG)n Simple_repeat Simple_repeat 4 37 0 3 744 251 253 92 0 chr3L 20935345 20935432 -3608125 + ROO_I LTR Pao 639 733 -7523 3 744 33 0 0 0 chr3L 20937109 20937142 -3606415 + AT_rich Low_complexity Low_complexity 1 33 0 3 744 228 67 0 0 chr3L 20939349 20939379 -3604178 + (CAA)n Simple_repeat Simple_repeat 3 32 0 3 744 198 0 0 0 chr3L 20939680 20939702 -3603855 + (CAT)n Simple_repeat Simple_repeat 1 22 0 3 744 21 0 0 0 chr3L 20940236 20940257 -3603300 + GC_rich Low_complexity Low_complexity 1 21 0 3 744 205 316 0 26 chr3L 20943663 20943741 -3599816 + (CATCC)n Simple_repeat Simple_repeat 3 78 0 3 744 23 33 0 0 chr3L 20944149 20944179 -3599378 + AT_rich Low_complexity Low_complexity 1 30 0 3 744 180 0 0 0 chr3L 20944415 20944435 -3599122 + (TG)n Simple_repeat Simple_repeat 2 21 0 3 744 22 35 0 0 chr3L 20945917 20945946 -3597611 + AT_rich Low_complexity Low_complexity 1 29 0 3 744 26 0 0 0 chr3L 20950039 20950065 -3593492 + AT_rich Low_complexity Low_complexity 1 26 0 3 744 23 0 0 0 chr3L 20951535 20951558 -3591999 + AT_rich Low_complexity Low_complexity 1 23 0 3 744 21 0 0 0 chr3L 20963914 20963935 -3579622 + AT_rich Low_complexity Low_complexity 1 21 0 3 744 21 0 0 0 chr3L 20966207 20966228 -3577329 + AT_rich Low_complexity Low_complexity 1 21 0 3 744 210 246 0 0 chr3L 20967902 20967963 -3575594 + (TATAA)n Simple_repeat Simple_repeat 1 61 0 3 744 211 191 0 0 chr3L 20967905 20967947 -3575610 + (TAATG)n Simple_repeat Simple_repeat 3 44 0 3 744 45 0 0 0 chr3L 20970159 20970204 -3573353 + AT_rich Low_complexity Low_complexity 1 45 0 3 745 195 42 0 0 chr3L 20974625 20974649 -3568908 + (TAGG)n Simple_repeat Simple_repeat 1 24 0 3 745 204 135 0 0 chr3L 20975382 20975419 -3568138 + (CGGA)n Simple_repeat Simple_repeat 3 39 0 3 745 29 70 0 0 chr3L 20980210 20980267 -3563290 + AT_rich Low_complexity Low_complexity 1 57 0 3 745 27 0 0 0 chr3L 20980380 20980407 -3563150 + AT_rich Low_complexity Low_complexity 1 27 0 3 745 24 53 0 0 chr3L 20981175 20981213 -3562344 + AT_rich Low_complexity Low_complexity 1 38 0 3 745 22 35 0 0 chr3L 20983691 20983720 -3559837 + AT_rich Low_complexity Low_complexity 1 29 0 3 745 24 0 0 0 chr3L 20984629 20984653 -3558904 + AT_rich Low_complexity Low_complexity 1 24 0 3 745 464 226 80 164 chr3L 20985407 20985608 -3557949 - DNAREP1_DM LINE Penelope -29 565 382 3 745 23 33 0 0 chr3L 20986200 20986230 -3557327 + AT_rich Low_complexity Low_complexity 1 30 0 3 745 219 69 0 0 chr3L 20987657 20987686 -3555871 + (TCGGG)n Simple_repeat Simple_repeat 5 33 0 3 745 24 0 0 0 chr3L 20988370 20988394 -3555163 + AT_rich Low_complexity Low_complexity 1 24 0 3 745 218 248 13 13 chr3L 20993106 20993265 -3550292 + (CTG)n Simple_repeat Simple_repeat 1 159 0 3 745 233 321 0 0 chr3L 20993562 20993643 -3549914 + (TGG)n Simple_repeat Simple_repeat 3 83 0 3 745 24 0 0 0 chr3L 20995445 20995469 -3548088 + AT_rich Low_complexity Low_complexity 1 24 0 3 745 213 163 0 0 chr3L 20997067 20997116 -3546441 + (CTG)n Simple_repeat Simple_repeat 1 49 0 3 745 309 118 0 0 chr3L 20997120 20997171 -3546386 + (CGA)n Simple_repeat Simple_repeat 2 52 0 3 745 242 170 0 19 chr3L 20997223 20997277 -3546280 - ROO_I LTR Pao -7525 731 679 3 745 219 36 0 0 chr3L 20997720 20997748 -3545809 + (A)n Simple_repeat Simple_repeat 1 28 0 3 745 27 49 0 0 chr3L 20999904 20999945 -3543612 + AT_rich Low_complexity Low_complexity 1 41 0 3 745 33 56 0 0 chr3L 21003689 21003743 -3539814 + AT_rich Low_complexity Low_complexity 1 54 0 3 745 22 35 0 0 chr3L 21004481 21004510 -3539047 + AT_rich Low_complexity Low_complexity 1 29 0 3 745 3790 5 0 0 chr3L 21008069 21008486 -3535071 + TIRANT_LTR LTR Gypsy 1 417 0 3 745 68237 2 0 1 chr3L 21008486 21016076 -3527481 + TIRANT_I LTR Gypsy 1 7692 0 3 745 3790 5 0 0 chr3L 21016076 21016493 -3527064 + TIRANT_LTR LTR Gypsy 1 417 0 3 745 22 0 0 0 chr3L 21019200 21019222 -3524335 + AT_rich Low_complexity Low_complexity 1 22 0 3 745 21 0 0 0 chr3L 21020211 21020232 -3523325 + AT_rich Low_complexity Low_complexity 1 21 0 3 745 28 61 0 0 chr3L 21024513 21024562 -3518995 + AT_rich Low_complexity Low_complexity 1 49 0 3 745 24 0 0 0 chr3L 21024729 21024753 -3518804 + AT_rich Low_complexity Low_complexity 1 24 0 3 745 225 0 0 0 chr3L 21032709 21032734 -3510823 + (A)n Simple_repeat Simple_repeat 1 25 0 3 745 27 0 0 0 chr3L 21033389 21033416 -3510141 + AT_rich Low_complexity Low_complexity 1 27 0 3 745 24 0 0 0 chr3L 21034348 21034372 -3509185 + AT_rich Low_complexity Low_complexity 1 24 0 3 745 31 26 0 0 chr3L 21034941 21034979 -3508578 + AT_rich Low_complexity Low_complexity 1 38 0 3 745 198 71 0 0 chr3L 21036170 21036198 -3507359 + (TA)n Simple_repeat Simple_repeat 2 29 0 3 745 183 80 0 0 chr3L 21039016 21039041 -3504516 + (T)n Simple_repeat Simple_repeat 1 25 0 3 745 23 33 0 0 chr3L 21040206 21040236 -3503321 + AT_rich Low_complexity Low_complexity 1 30 0 3 745 288 53 0 0 chr3L 21041014 21041052 -3502505 + (TC)n Simple_repeat Simple_repeat 1 38 0 3 745 207 0 0 0 chr3L 21042546 21042569 -3500988 + (CAA)n Simple_repeat Simple_repeat 2 24 0 3 745 180 77 0 0 chr3L 21042679 21042705 -3500852 + (TC)n Simple_repeat Simple_repeat 1 26 0 3 745 30 59 0 0 chr3L 21045777 21045828 -3497729 + AT_rich Low_complexity Low_complexity 1 51 0 3 745 21 36 0 0 chr3L 21046395 21046423 -3497134 + AT_rich Low_complexity Low_complexity 1 28 0 3 745 22 56 0 0 chr3L 21047010 21047046 -3496511 + AT_rich Low_complexity Low_complexity 1 36 0 3 745 21 36 0 0 chr3L 21051255 21051283 -3492274 + AT_rich Low_complexity Low_complexity 1 28 0 3 745 21 0 0 0 chr3L 21052362 21052383 -3491174 + AT_rich Low_complexity Low_complexity 1 21 0 3 745 198 0 0 0 chr3L 21052611 21052633 -3490924 + (T)n Simple_repeat Simple_repeat 1 22 0 3 745 25 0 0 0 chr3L 21053979 21054004 -3489553 + AT_rich Low_complexity Low_complexity 1 25 0 3 745 308 231 0 0 chr3L 21054327 21054392 -3489165 + DNAREP1_DM LINE Penelope 1 65 -529 3 745 362 184 105 0 chr3L 21054506 21054582 -3488975 + DNAREP1_DM LINE Penelope 506 589 -5 3 745 207 0 0 0 chr3L 21057556 21057579 -3485978 + (CCA)n Simple_repeat Simple_repeat 1 23 0 3 745 37 52 0 0 chr3L 21058145 21058203 -3485354 + AT_rich Low_complexity Low_complexity 1 58 0 3 745 222 105 0 0 chr3L 21062048 21062086 -3481471 + (CAG)n Simple_repeat Simple_repeat 1 38 0 3 745 183 129 0 0 chr3L 21062266 21062297 -3481260 + (CAG)n Simple_repeat Simple_repeat 3 33 0 3 745 201 154 0 0 chr3L 21063991 21064030 -3479527 + (CAG)n Simple_repeat Simple_repeat 2 40 0 3 745 255 224 0 15 chr3L 21065773 21065841 -3477716 + (CAG)n Simple_repeat Simple_repeat 2 68 0 3 745 286 300 0 0 chr3L 21067624 21067694 -3475863 + (TTAGGC)n Simple_repeat Simple_repeat 3 72 0 3 745 186 133 0 0 chr3L 21069375 21069405 -3474152 + (CCG)n Simple_repeat Simple_repeat 2 31 0 3 745 26 0 0 0 chr3L 21075297 21075323 -3468234 + AT_rich Low_complexity Low_complexity 1 26 0 3 745 227 93 23 0 chr3L 21076286 21076329 -3467228 + (CAAAAA)n Simple_repeat Simple_repeat 5 48 0 3 745 23 33 0 0 chr3L 21077324 21077354 -3466203 + AT_rich Low_complexity Low_complexity 1 30 0 3 745 28 0 0 0 chr3L 21077941 21077969 -3465588 + AT_rich Low_complexity Low_complexity 1 28 0 3 745 29 28 0 0 chr3L 21078905 21078941 -3464616 + AT_rich Low_complexity Low_complexity 1 36 0 3 745 386 94 16 0 chr3L 21084243 21084307 -3459250 + (CTG)n Simple_repeat Simple_repeat 1 65 0 3 745 23 54 0 0 chr3L 21085097 21085134 -3458423 + AT_rich Low_complexity Low_complexity 1 37 0 3 745 207 0 0 0 chr3L 21086522 21086545 -3457012 + (CATATA)n Simple_repeat Simple_repeat 2 24 0 3 745 25 0 0 0 chr3L 21090703 21090728 -3452829 + AT_rich Low_complexity Low_complexity 1 25 0 3 745 24 0 0 0 chr3L 21093725 21093749 -3449808 + AT_rich Low_complexity Low_complexity 1 24 0 3 745 217 267 0 0 chr3L 21095940 21096000 -3447557 + (TGGA)n Simple_repeat Simple_repeat 1 60 0 3 745 23 0 0 0 chr3L 21098489 21098512 -3445045 + AT_rich Low_complexity Low_complexity 1 23 0 3 745 48 53 0 0 chr3L 21101697 21101773 -3441784 + AT_rich Low_complexity Low_complexity 1 76 0 3 746 53 17 0 0 chr3L 21102603 21102663 -3440894 + AT_rich Low_complexity Low_complexity 1 60 0 3 746 237 65 0 0 chr3L 21103020 21103051 -3440506 + (CAA)n Simple_repeat Simple_repeat 1 31 0 3 746 198 0 0 0 chr3L 21111831 21111853 -3431704 + (CA)n Simple_repeat Simple_repeat 1 22 0 3 746 23 0 0 0 chr3L 21112858 21112881 -3430676 + AT_rich Low_complexity Low_complexity 1 23 0 3 746 252 59 0 0 chr3L 21113780 21113814 -3429743 + (T)n Simple_repeat Simple_repeat 1 34 0 3 746 21 71 0 0 chr3L 21114580 21114622 -3428935 + AT_rich Low_complexity Low_complexity 1 42 0 3 746 21 36 0 0 chr3L 21115751 21115779 -3427778 + AT_rich Low_complexity Low_complexity 1 28 0 3 746 21 82 0 0 chr3L 21116897 21116946 -3426611 + AT_rich Low_complexity Low_complexity 1 49 0 3 746 220 213 0 0 chr3L 21117504 21117551 -3426006 + (CAA)n Simple_repeat Simple_repeat 2 48 0 3 746 217 318 12 12 chr3L 21117637 21117723 -3425834 + (CGGA)n Simple_repeat Simple_repeat 4 89 0 3 746 22 0 0 0 chr3L 21118016 21118038 -3425519 + AT_rich Low_complexity Low_complexity 1 22 0 3 746 28 29 0 0 chr3L 21120457 21120492 -3423065 + AT_rich Low_complexity Low_complexity 1 35 0 3 746 21 0 0 0 chr3L 21121177 21121198 -3422359 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 24 0 0 0 chr3L 21121271 21121295 -3422262 + AT_rich Low_complexity Low_complexity 1 24 0 3 746 30 77 0 0 chr3L 21121403 21121468 -3422089 + AT_rich Low_complexity Low_complexity 1 65 0 3 746 22 0 0 0 chr3L 21123283 21123305 -3420252 + AT_rich Low_complexity Low_complexity 1 22 0 3 746 21 36 0 0 chr3L 21125510 21125538 -3418019 + AT_rich Low_complexity Low_complexity 1 28 0 3 746 24 32 0 0 chr3L 21126374 21126405 -3417152 + AT_rich Low_complexity Low_complexity 1 31 0 3 746 316 146 163 47 chr3L 21136443 21136529 -3407028 + DNAREP1_DM LINE Penelope 2 97 -497 3 746 205 51 51 0 chr3L 21136600 21136639 -3406918 + (TAA)n Simple_repeat Simple_repeat 2 42 0 3 746 182 62 31 0 chr3L 21137698 21137730 -3405827 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 3 746 1070 123 165 9 chr3L 21138541 21138771 -3404786 - DNAREP1_DM LINE Penelope -327 267 2 3 746 182 37 0 36 chr3L 21141461 21141489 -3402068 + (TATAA)n Simple_repeat Simple_repeat 1 27 0 3 746 24 32 0 0 chr3L 21142624 21142655 -3400902 + AT_rich Low_complexity Low_complexity 1 31 0 3 746 240 100 0 0 chr3L 21144825 21144865 -3398692 + (TG)n Simple_repeat Simple_repeat 1 40 0 3 746 2246 15 11 11 chr3L 21145018 21145293 -3398264 + BLASTOPIA_LTR LTR Gypsy 1 275 0 3 746 41545 1 1 0 chr3L 21145293 21149770 -3393787 + BLASTOPIA_I LTR Gypsy 1 4481 0 3 746 2246 15 11 11 chr3L 21149770 21150045 -3393512 + BLASTOPIA_LTR LTR Gypsy 1 275 0 3 746 382 195 0 0 chr3L 21150137 21150214 -3393343 - DNAREP1_DM LINE Penelope -22 572 496 3 746 389 227 11 0 chr3L 21150271 21150359 -3393198 - DNAREP1_DM LINE Penelope -505 89 1 3 746 24 0 0 0 chr3L 21157643 21157667 -3385890 + AT_rich Low_complexity Low_complexity 1 24 0 3 746 24 53 0 0 chr3L 21158648 21158686 -3384871 + AT_rich Low_complexity Low_complexity 1 38 0 3 746 39 60 0 0 chr3L 21159907 21159974 -3383583 + AT_rich Low_complexity Low_complexity 1 67 0 3 746 21 0 0 0 chr3L 21162792 21162813 -3380744 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 21 0 0 0 chr3L 21163977 21163998 -3379559 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 23 0 0 0 chr3L 21164113 21164136 -3379421 + AT_rich Low_complexity Low_complexity 1 23 0 3 746 25 0 0 0 chr3L 21165431 21165456 -3378101 + AT_rich Low_complexity Low_complexity 1 25 0 3 746 507 95 0 0 chr3L 21168117 21168191 -3375366 + (TA)n Simple_repeat Simple_repeat 2 75 0 3 746 30 0 0 0 chr3L 21168424 21168454 -3375103 + AT_rich Low_complexity Low_complexity 1 30 0 3 746 207 100 0 0 chr3L 21169574 21169604 -3373953 + (GAA)n Simple_repeat Simple_repeat 2 31 0 3 746 28 61 0 0 chr3L 21175810 21175859 -3367698 + AT_rich Low_complexity Low_complexity 1 49 0 3 746 25 0 0 0 chr3L 21176326 21176351 -3367206 + AT_rich Low_complexity Low_complexity 1 25 0 3 746 256 242 0 0 chr3L 21176956 21177022 -3366535 + (TG)n Simple_repeat Simple_repeat 2 67 0 3 746 21 0 0 0 chr3L 21177138 21177159 -3366398 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 33 66 0 0 chr3L 21178172 21178233 -3365324 + AT_rich Low_complexity Low_complexity 1 61 0 3 746 325 113 0 0 chr3L 21178445 21178498 -3365059 - ROO_I LTR Pao -7542 714 662 3 746 29 70 0 0 chr3L 21181471 21181528 -3362029 + AT_rich Low_complexity Low_complexity 1 57 0 3 746 24 32 0 0 chr3L 21183452 21183483 -3360074 + AT_rich Low_complexity Low_complexity 1 31 0 3 746 261 254 14 0 chr3L 21183955 21184026 -3359531 + (CA)n Simple_repeat Simple_repeat 1 72 0 3 746 23 33 0 0 chr3L 21184314 21184344 -3359213 + AT_rich Low_complexity Low_complexity 1 30 0 3 746 219 69 0 0 chr3L 21184825 21184854 -3358703 + (ATG)n Simple_repeat Simple_repeat 1 29 0 3 746 210 118 0 0 chr3L 21185180 21185214 -3358343 + (TC)n Simple_repeat Simple_repeat 2 35 0 3 746 261 119 0 0 chr3L 21185344 21185386 -3358171 + (CAG)n Simple_repeat Simple_repeat 1 42 0 3 746 22 0 0 0 chr3L 21190788 21190810 -3352747 + AT_rich Low_complexity Low_complexity 1 22 0 3 746 389 191 95 0 chr3L 21192597 21192681 -3350876 + DNAREP1_DM LINE Penelope 431 522 -72 3 746 24 32 0 0 chr3L 21193994 21194025 -3349532 + AT_rich Low_complexity Low_complexity 1 31 0 3 746 203 209 0 23 chr3L 21194425 21194469 -3349088 + (ATG)n Simple_repeat Simple_repeat 3 45 0 3 746 180 0 0 0 chr3L 21194506 21194526 -3349031 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 3 746 22 0 0 0 chr3L 21195132 21195154 -3348403 + AT_rich Low_complexity Low_complexity 1 22 0 3 746 214 195 0 0 chr3L 21195755 21195796 -3347761 + (TTG)n Simple_repeat Simple_repeat 3 43 0 3 746 201 39 0 0 chr3L 21196053 21196079 -3347478 + (TC)n Simple_repeat Simple_repeat 2 27 0 3 746 25 0 0 0 chr3L 21196758 21196783 -3346774 + AT_rich Low_complexity Low_complexity 1 25 0 3 746 323 275 67 0 chr3L 21199750 21199870 -3343687 + DNAREP1_DM LINE Penelope 2 129 -465 3 746 836 192 95 57 chr3L 21199924 21200134 -3343423 + DNAREP1_DM LINE Penelope 371 588 -6 3 746 30 27 0 0 chr3L 21200154 21200191 -3343366 + AT_rich Low_complexity Low_complexity 1 37 0 3 746 23 0 0 0 chr3L 21200385 21200408 -3343149 + AT_rich Low_complexity Low_complexity 1 23 0 3 746 21 57 0 0 chr3L 21201237 21201272 -3342285 + AT_rich Low_complexity Low_complexity 1 35 0 3 746 40 37 0 0 chr3L 21202814 21202868 -3340689 + AT_rich Low_complexity Low_complexity 1 54 0 3 746 27 0 0 0 chr3L 21204455 21204482 -3339075 + AT_rich Low_complexity Low_complexity 1 27 0 3 746 21 0 0 0 chr3L 21205845 21205866 -3337691 + AT_rich Low_complexity Low_complexity 1 21 0 3 746 25 65 0 0 chr3L 21208392 21208438 -3335119 + AT_rich Low_complexity Low_complexity 1 46 0 3 746 243 0 0 0 chr3L 21209055 21209082 -3334475 + (A)n Simple_repeat Simple_repeat 1 27 0 3 746 22 35 0 0 chr3L 21210625 21210654 -3332903 + AT_rich Low_complexity Low_complexity 1 29 0 3 746 49 71 0 0 chr3L 21212981 21213079 -3330478 + AT_rich Low_complexity Low_complexity 1 98 0 3 746 229 179 18 0 chr3L 21214228 21214284 -3329273 - ROO_I LTR Pao -7535 721 665 3 746 23 78 0 0 chr3L 21215830 21215881 -3327676 + AT_rich Low_complexity Low_complexity 1 51 0 3 746 24 32 0 0 chr3L 21215938 21215969 -3327588 + AT_rich Low_complexity Low_complexity 1 31 0 3 746 268 222 0 0 chr3L 21216876 21216930 -3326627 - DNAREP1_DM LINE Penelope -104 490 437 3 746 32 43 0 0 chr3L 21217017 21217063 -3326494 + AT_rich Low_complexity Low_complexity 1 46 0 3 746 212 189 0 0 chr3L 21217742 21217779 -3325778 + (TTG)n Simple_repeat Simple_repeat 3 39 0 3 746 483 300 6 0 chr3L 21219236 21219396 -3324161 + (CTG)n Simple_repeat Simple_repeat 1 161 0 3 746 258 225 0 0 chr3L 21220734 21220814 -3322743 + GA-rich Low_complexity Low_complexity 2 81 0 3 746 201 231 0 0 chr3L 21220933 21220985 -3322572 + (CAG)n Simple_repeat Simple_repeat 2 53 0 3 746 238 186 11 44 chr3L 21221102 21221192 -3322365 + ROO_I LTR Pao 658 744 -7512 3 746 198 150 0 0 chr3L 21221402 21221442 -3322115 + (CAG)n Simple_repeat Simple_repeat 1 40 0 3 746 26 30 0 0 chr3L 21222078 21222111 -3321446 + AT_rich Low_complexity Low_complexity 1 33 0 3 746 34 55 0 0 chr3L 21222170 21222225 -3321332 + AT_rich Low_complexity Low_complexity 1 55 0 3 746 279 79 0 0 chr3L 21222639 21222677 -3320880 + (CAGC)n Simple_repeat Simple_repeat 4 41 0 3 746 292 179 0 104 chr3L 21224013 21224119 -3319438 + ROO_I LTR Pao 643 737 -7519 3 746 248 206 0 40 chr3L 21225253 21225329 -3318228 + ROO_I LTR Pao 659 731 -7525 3 746 234 250 18 0 chr3L 21225443 21225499 -3318058 + (CTG)n Simple_repeat Simple_repeat 3 59 0 3 746 215 214 0 0 chr3L 21226671 21226713 -3316844 + (CAG)n Simple_repeat Simple_repeat 3 44 0 3 746 231 88 0 0 chr3L 21227491 21227525 -3316032 + (CAA)n Simple_repeat Simple_repeat 1 34 0 3 746 347 167 13 0 chr3L 21230494 21230572 -3312985 + ROO_I LTR Pao 651 729 -7527 3 746 229 186 0 0 chr3L 21230694 21230737 -3312820 + (CTG)n Simple_repeat Simple_repeat 2 44 0 3 746 409 159 0 0 chr3L 21231000 21231069 -3312488 + DNAREP1_DM LINE Penelope 4 72 -522 3 746 605 173 6 33 chr3L 21231128 21231295 -3312262 + DNAREP1_DM LINE Penelope 389 594 0 3 746 285 29 0 0 chr3L 21231709 21231743 -3311814 + (GAGTG)n Simple_repeat Simple_repeat 5 38 0 3 746 23 0 0 0 chr3L 21232496 21232519 -3311038 + AT_rich Low_complexity Low_complexity 1 23 0 3 746 240 224 30 0 chr3L 21233015 21233082 -3310475 + ROO_I LTR Pao 665 733 -7523 3 747 24 53 0 0 chr3L 21233743 21233781 -3309776 + AT_rich Low_complexity Low_complexity 1 38 0 3 747 206 311 9 28 chr3L 21234438 21234544 -3309013 + (TATG)n Simple_repeat Simple_repeat 2 105 0 3 747 228 227 0 0 chr3L 21234501 21234545 -3309012 + (CATA)n Simple_repeat Simple_repeat 3 46 0 3 747 203 237 0 33 chr3L 21235259 21235320 -3308237 + A-rich Low_complexity Low_complexity 1 59 0 3 747 207 0 0 0 chr3L 21236753 21236776 -3306781 + (T)n Simple_repeat Simple_repeat 1 23 0 3 747 61856 2 1 10 chr3L 21236883 21244408 -3299149 + DM412 LTR Gypsy 1 6897 0 3 747 281 172 16 0 chr3L 21245621 21245685 -3297872 + (CA)n Simple_repeat Simple_repeat 2 66 0 3 747 207 69 0 0 chr3L 21246661 21246690 -3296867 + (CGGA)n Simple_repeat Simple_repeat 4 32 0 3 747 211 222 0 0 chr3L 21247401 21247446 -3296111 + (CAA)n Simple_repeat Simple_repeat 1 45 0 3 747 186 43 0 0 chr3L 21248376 21248399 -3295158 + (GATTG)n Simple_repeat Simple_repeat 4 26 0 3 747 192 40 0 0 chr3L 21248399 21248424 -3295133 + (GCTG)n Simple_repeat Simple_repeat 3 27 0 3 747 195 42 0 0 chr3L 21248684 21248708 -3294849 + (TAGA)n Simple_repeat Simple_repeat 2 25 0 3 747 180 176 0 0 chr3L 21249881 21249915 -3293642 + (ATG)n Simple_repeat Simple_repeat 1 34 0 3 747 214 196 59 0 chr3L 21250263 21250314 -3293243 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 3 747 181 151 0 36 chr3L 21250642 21250697 -3292860 + (TTTCG)n Simple_repeat Simple_repeat 1 53 0 3 747 232 267 17 0 chr3L 21252111 21252171 -3291386 + (TTG)n Simple_repeat Simple_repeat 3 63 0 3 747 208 143 0 28 chr3L 21252616 21252652 -3290905 + (CA)n Simple_repeat Simple_repeat 2 36 0 3 747 347 41 20 0 chr3L 21253245 21253294 -3290263 + (TA)n Simple_repeat Simple_repeat 2 51 0 3 747 214 241 0 0 chr3L 21255140 21255194 -3288363 + (TCTG)n Simple_repeat Simple_repeat 4 57 0 3 747 356 184 0 88 chr3L 21256195 21256308 -3287249 + ROO_I LTR Pao 635 737 -7519 3 747 215 216 0 0 chr3L 21256423 21256460 -3287097 + (CAA)n Simple_repeat Simple_repeat 1 37 0 3 747 41 66 0 0 chr3L 21258992 21259068 -3284489 + AT_rich Low_complexity Low_complexity 1 76 0 3 747 180 0 0 0 chr3L 21259595 21259615 -3283942 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 3 747 195 204 0 0 chr3L 21263782 21263836 -3279721 + (TA)n Simple_repeat Simple_repeat 1 54 0 3 747 258 289 99 26 chr3L 21268191 21268354 -3275203 + FW2_DM LINE Jockey 1769 1866 -2095 3 747 38 22 0 0 chr3L 21277670 21277715 -3265842 + AT_rich Low_complexity Low_complexity 1 45 0 3 747 201 94 0 0 chr3L 21280607 21280639 -3262918 + (CTG)n Simple_repeat Simple_repeat 3 34 0 3 747 39 0 0 0 chr3L 21284859 21284898 -3258659 + AT_rich Low_complexity Low_complexity 1 39 0 3 747 201 162 0 0 chr3L 21292205 21292242 -3251315 + A-rich Low_complexity Low_complexity 6 42 0 3 747 21 0 0 0 chr3L 21294896 21294917 -3248640 + AT_rich Low_complexity Low_complexity 1 21 0 3 747 22 0 0 0 chr3L 21297296 21297318 -3246239 + AT_rich Low_complexity Low_complexity 1 22 0 3 747 3990 2 0 0 chr3L 21299302 21299730 -3243827 + ROO_LTR LTR Pao 1 428 0 3 747 74388 1 3 2 chr3L 21299730 21307975 -3235582 + ROO_I LTR Pao 1 8256 0 3 747 3958 7 0 0 chr3L 21307975 21308403 -3235154 + ROO_LTR LTR Pao 1 428 0 3 747 24 0 0 0 chr3L 21309179 21309203 -3234354 + AT_rich Low_complexity Low_complexity 1 24 0 3 747 207 100 0 0 chr3L 21310267 21310297 -3233260 + (TGG)n Simple_repeat Simple_repeat 3 32 0 3 747 218 136 0 22 chr3L 21310673 21310718 -3232839 + (CA)n Simple_repeat Simple_repeat 1 44 0 3 747 220 53 26 26 chr3L 21313329 21313368 -3230189 + (CCA)n Simple_repeat Simple_repeat 3 41 0 3 747 22 35 0 0 chr3L 21317514 21317543 -3226014 + AT_rich Low_complexity Low_complexity 1 29 0 3 747 25 0 0 0 chr3L 21319781 21319806 -3223751 + AT_rich Low_complexity Low_complexity 1 25 0 3 747 38 22 0 0 chr3L 21322412 21322457 -3221100 + AT_rich Low_complexity Low_complexity 1 45 0 3 747 198 150 0 0 chr3L 21323128 21323168 -3220389 + (TTG)n Simple_repeat Simple_repeat 3 42 0 3 747 225 280 27 0 chr3L 21323438 21323513 -3220044 - DNAREP1_DM LINE Penelope -150 444 368 3 747 21 0 0 0 chr3L 21325656 21325677 -3217880 + AT_rich Low_complexity Low_complexity 1 21 0 3 747 34 24 0 0 chr3L 21325827 21325868 -3217689 + AT_rich Low_complexity Low_complexity 1 41 0 3 747 273 98 0 0 chr3L 21327485 21327526 -3216031 + (TA)n Simple_repeat Simple_repeat 2 42 0 3 747 227 234 15 15 chr3L 21329692 21329757 -3213800 + (ATG)n Simple_repeat Simple_repeat 3 67 0 3 747 242 204 0 0 chr3L 21337648 21337697 -3205860 + GA-rich Low_complexity Low_complexity 2 50 0 3 747 22 56 0 0 chr3L 21339219 21339255 -3204302 + AT_rich Low_complexity Low_complexity 1 36 0 3 747 233 226 19 0 chr3L 21340790 21340843 -3202714 + (TATG)n Simple_repeat Simple_repeat 3 56 0 3 747 214 143 19 58 chr3L 21342633 21342685 -3200872 + (CATAC)n Simple_repeat Simple_repeat 2 51 0 3 747 21 71 0 0 chr3L 21343060 21343102 -3200455 + AT_rich Low_complexity Low_complexity 1 42 0 3 747 217 314 0 0 chr3L 21346231 21346317 -3197240 + GA-rich Low_complexity Low_complexity 2 87 0 3 747 21 0 0 0 chr3L 21349080 21349101 -3194456 + AT_rich Low_complexity Low_complexity 1 21 0 3 747 34 0 0 0 chr3L 21349114 21349148 -3194409 + AT_rich Low_complexity Low_complexity 1 34 0 3 747 27 0 0 0 chr3L 21349752 21349779 -3193778 + AT_rich Low_complexity Low_complexity 1 27 0 3 747 612 177 73 0 chr3L 21350377 21350554 -3193003 - DNAREP1_DM LINE Penelope -33 561 323 3 747 327 226 75 11 chr3L 21350559 21350653 -3192904 - DNAREP1_DM LINE Penelope -493 101 2 3 747 23 33 0 0 chr3L 21353758 21353788 -3189769 + AT_rich Low_complexity Low_complexity 1 30 0 3 747 26 0 0 0 chr3L 21353926 21353952 -3189605 + AT_rich Low_complexity Low_complexity 1 26 0 3 747 25 0 0 0 chr3L 21354007 21354032 -3189525 + AT_rich Low_complexity Low_complexity 1 25 0 3 747 7845 23 0 0 chr3L 21354874 21355778 -3187779 + G2_DM LINE Jockey 2196 3099 -3 3 747 427 117 1087 0 chr3L 21356151 21356243 -3187314 - DNAREP1_DM LINE Penelope 0 594 532 3 747 1290 161 63 24 chr3L 21356243 21356530 -3187027 - DNAREP1_DM LINE Penelope -291 303 6 3 747 23 0 0 0 chr3L 21356536 21356559 -3186998 + AT_rich Low_complexity Low_complexity 1 23 0 3 747 180 0 0 0 chr3L 21358985 21359005 -3184552 + (TTA)n Simple_repeat Simple_repeat 3 22 0 3 747 47190 1 0 0 chr3L 21359005 21364365 -3179192 - I_DM LINE I -774 5457 99 3 747 279 186 0 48 chr3L 21364387 21364449 -3179108 - DNAREP1_DM LINE Penelope -8 586 528 3 747 239 91 30 0 chr3L 21364500 21364533 -3179024 - DNAREP1_DM LINE Penelope -532 62 29 3 748 23 54 0 0 chr3L 21365636 21365673 -3177884 + AT_rich Low_complexity Low_complexity 1 37 0 3 748 605 185 43 61 chr3L 21366100 21366311 -3177246 + DMTOM1_LTR LTR Gypsy 284 488 -19 3 748 426 100 14 28 chr3L 21366302 21366374 -3177183 + DMTOM1_LTR LTR Gypsy 340 410 0 3 748 217 286 8 31 chr3L 21366624 21366754 -3176803 + (TAAA)n Simple_repeat Simple_repeat 2 128 0 3 748 11040 286 31 28 chr3L 21366961 21371484 -3172073 + ROVER-I_DM LTR Gypsy 218 5262 -1322 3 748 1115 146 0 5 chr3L 21371486 21371679 -3171878 + DM297_I LTR Gypsy 5490 5681 -486 3 748 866 126 0 53 chr3L 21371678 21371829 -3171728 + DM176_I LTR Gypsy 6278 6420 0 3 748 605 185 43 61 chr3L 21372052 21372263 -3171294 + DMTOM1_LTR LTR Gypsy 284 488 -19 3 748 426 100 14 28 chr3L 21372254 21372326 -3171231 + DMTOM1_LTR LTR Gypsy 340 410 0 3 748 25 65 0 0 chr3L 21375240 21375286 -3168271 + AT_rich Low_complexity Low_complexity 1 46 0 3 748 232 178 22 0 chr3L 21375471 21375516 -3168041 + CT-rich Low_complexity Low_complexity 2 47 0 3 748 234 91 0 0 chr3L 21376341 21376374 -3167183 + (CATATA)n Simple_repeat Simple_repeat 1 33 0 3 748 27 0 0 0 chr3L 21381542 21381569 -3161988 + AT_rich Low_complexity Low_complexity 1 27 0 3 748 23 0 0 0 chr3L 21381589 21381612 -3161945 + AT_rich Low_complexity Low_complexity 1 23 0 3 748 288 111 0 0 chr3L 21382859 21382904 -3160653 + (T)n Simple_repeat Simple_repeat 1 45 0 3 748 23 0 0 0 chr3L 21384620 21384643 -3158914 + AT_rich Low_complexity Low_complexity 1 23 0 3 748 237 135 0 86 chr3L 21392571 21392652 -3150905 + (TGG)n Simple_repeat Simple_repeat 2 75 0 3 748 180 0 0 0 chr3L 21395362 21395382 -3148175 + (TAATG)n Simple_repeat Simple_repeat 5 24 0 3 748 206 188 20 20 chr3L 21396280 21396329 -3147228 + (TTG)n Simple_repeat Simple_repeat 3 51 0 3 748 41 0 0 0 chr3L 21400144 21400185 -3143372 + AT_rich Low_complexity Low_complexity 1 41 0 3 748 315 0 0 0 chr3L 21400402 21400437 -3143120 + (CAA)n Simple_repeat Simple_repeat 2 36 0 3 748 189 154 0 0 chr3L 21400969 21401008 -3142549 + A-rich Low_complexity Low_complexity 2 40 0 3 748 1040 231 147 24 chr3L 21401025 21401406 -3142151 + DNAREP1_DM LINE Penelope 160 587 -7 3 748 33 0 0 0 chr3L 21403211 21403244 -3140313 + AT_rich Low_complexity Low_complexity 1 33 0 3 748 186 118 0 0 chr3L 21407674 21407708 -3135849 + (TTATA)n Simple_repeat Simple_repeat 4 37 0 3 748 243 158 0 0 chr3L 21419839 21419877 -3123680 + DNAREP1_DM LINE Penelope 6 43 -551 3 748 361 197 0 40 chr3L 21419885 21419959 -3123598 - DNAREP1_DM LINE Penelope -523 71 1 3 748 25 0 0 0 chr3L 21421856 21421881 -3121676 + AT_rich Low_complexity Low_complexity 1 25 0 3 748 266 177 0 0 chr3L 21428484 21428546 -3115011 + ROO_I LTR Pao 665 726 -7530 3 748 222 205 0 0 chr3L 21429342 21429425 -3114132 + (CAG)n Simple_repeat Simple_repeat 1 83 0 3 748 202 315 0 0 chr3L 21429778 21429870 -3113687 + GA-rich Low_complexity Low_complexity 3 94 0 3 748 221 244 12 35 chr3L 21430058 21430143 -3113414 + A-rich Low_complexity Low_complexity 3 85 0 3 748 244 312 11 0 chr3L 21431726 21431819 -3111738 + (TATG)n Simple_repeat Simple_repeat 3 96 0 3 748 3672 53 106 2 chr3L 21434664 21435219 -3108338 - TC1_DM DNA Tc1 -1053 613 1 3 748 274 180 0 0 chr3L 21435349 21435399 -3108158 - DNAREP1_DM LINE Penelope -179 415 366 3 748 23 33 0 0 chr3L 21437483 21437513 -3106044 + AT_rich Low_complexity Low_complexity 1 30 0 3 748 23 33 0 0 chr3L 21438669 21438699 -3104858 + AT_rich Low_complexity Low_complexity 1 30 0 3 748 25 0 0 0 chr3L 21440618 21440643 -3102914 + AT_rich Low_complexity Low_complexity 1 25 0 3 748 198 0 0 0 chr3L 21441125 21441147 -3102410 + (TATTG)n Simple_repeat Simple_repeat 2 23 0 3 748 23 33 0 0 chr3L 21441990 21442020 -3101537 + AT_rich Low_complexity Low_complexity 1 30 0 3 748 249 33 0 0 chr3L 21444935 21444965 -3098592 + (A)n Simple_repeat Simple_repeat 1 30 0 3 748 180 77 0 0 chr3L 21447176 21447202 -3096355 + (CGGA)n Simple_repeat Simple_repeat 2 27 0 3 748 286 195 329 0 chr3L 21451480 21451562 -3091995 + DNAREP1_DM LINE Penelope 384 492 -102 3 748 311 102 20 0 chr3L 21451574 21451623 -3091934 + DNAREP1_DM LINE Penelope 538 587 -7 3 748 27 29 0 0 chr3L 21453119 21453153 -3090404 + AT_rich Low_complexity Low_complexity 1 34 0 3 748 22 0 0 0 chr3L 21454543 21454565 -3088992 + AT_rich Low_complexity Low_complexity 1 22 0 3 748 234 105 0 0 chr3L 21456389 21456427 -3087130 + (CTG)n Simple_repeat Simple_repeat 1 38 0 3 748 237 33 0 0 chr3L 21457260 21457290 -3086267 + (CATA)n Simple_repeat Simple_repeat 3 32 0 3 748 240 309 0 12 chr3L 21458064 21458146 -3085411 + (TTG)n Simple_repeat Simple_repeat 1 81 0 3 748 231 196 0 0 chr3L 21461153 21461204 -3082353 + CT-rich Low_complexity Low_complexity 2 52 0 3 748 25 0 0 0 chr3L 21461686 21461711 -3081846 + AT_rich Low_complexity Low_complexity 1 25 0 3 748 180 111 0 0 chr3L 21464616 21464643 -3078914 + (CAT)n Simple_repeat Simple_repeat 1 27 0 3 748 303 104 0 0 chr3L 21465159 21465207 -3078350 + (TG)n Simple_repeat Simple_repeat 1 48 0 3 748 22 35 0 0 chr3L 21465699 21465728 -3077829 + AT_rich Low_complexity Low_complexity 1 29 0 3 748 201 222 0 0 chr3L 21467908 21467944 -3075613 + (CCG)n Simple_repeat Simple_repeat 3 38 0 3 748 222 184 0 0 chr3L 21468086 21468124 -3075433 + (CCG)n Simple_repeat Simple_repeat 2 39 0 3 748 240 59 0 0 chr3L 21469467 21469501 -3074056 + (TA)n Simple_repeat Simple_repeat 2 35 0 3 748 321 26 0 0 chr3L 21469818 21469856 -3073701 + (GA)n Simple_repeat Simple_repeat 2 39 0 3 748 264 158 0 0 chr3L 21470005 21470062 -3073495 + CT-rich Low_complexity Low_complexity 1 57 0 3 748 180 0 0 0 chr3L 21473700 21473720 -3069837 + (ATG)n Simple_repeat Simple_repeat 2 21 0 3 748 189 0 0 0 chr3L 21474769 21474790 -3068767 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 3 748 459 202 0 21 chr3L 21475910 21476006 -3067551 + DNAREP1_DM LINE Penelope 384 477 -117 3 748 303 36 17 51 chr3L 21476522 21476581 -3066976 + (TAA)n Simple_repeat Simple_repeat 1 57 0 3 748 805 162 297 38 chr3L 21477367 21477680 -3065877 - DNAREP1_DM LINE Penelope -20 574 181 3 748 4873 28 12 7 chr3L 21478301 21478886 -3064671 + DMCR1A LINE CR1 4 591 -3879 3 748 8830 28 22 0 chr3L 21478881 21479901 -3063656 + DMCR1A LINE CR1 1198 2240 -2230 3 748 17242 24 25 1 chr3L 21479900 21481905 -3061652 + DMCR1A LINE CR1 2419 4470 0 3 748 290 168 35 106 chr3L 21485380 21485493 -3058064 + DNAREP1_DM LINE Penelope 409 513 -81 3 748 22 0 0 0 chr3L 21486115 21486137 -3057420 + AT_rich Low_complexity Low_complexity 1 22 0 3 748 25 31 0 0 chr3L 21486964 21486996 -3056561 + AT_rich Low_complexity Low_complexity 1 32 0 3 748 25 31 0 0 chr3L 21487267 21487299 -3056258 + AT_rich Low_complexity Low_complexity 1 32 0 3 748 186 167 0 0 chr3L 21488533 21488569 -3054988 + (CTG)n Simple_repeat Simple_repeat 1 36 0 3 748 198 0 0 0 chr3L 21490165 21490187 -3053370 + (TAA)n Simple_repeat Simple_repeat 3 24 0 3 748 1071 0 0 0 chr3L 21491643 21491762 -3051795 + (CA)n Simple_repeat Simple_repeat 1 119 0 3 748 4187 15 0 0 chr3L 21491991 21492460 -3051097 + PROTOP_A DNA P 1 469 -636 3 748 9542 20 1 3 chr3L 21492460 21493567 -3049990 + PROTOP_A DNA P 1 1105 0 3 748 26 82 0 0 chr3L 21494044 21494105 -3049452 + AT_rich Low_complexity Low_complexity 1 61 0 3 748 276 213 89 51 chr3L 21494145 21494224 -3049333 + DNAREP1_DM LINE Penelope 281 362 -232 3 748 256 86 14 159 chr3L 21494295 21494364 -3049193 + PROTOP_A DNA P 509 567 -538 3 749 23 0 0 0 chr3L 21496242 21496265 -3047292 + AT_rich Low_complexity Low_complexity 1 23 0 3 749 25 51 0 0 chr3L 21509096 21509135 -3034422 + AT_rich Low_complexity Low_complexity 1 39 0 3 749 22 80 0 0 chr3L 21515167 21515217 -3028340 + AT_rich Low_complexity Low_complexity 1 50 0 3 749 21 0 0 0 chr3L 21515977 21515998 -3027559 + AT_rich Low_complexity Low_complexity 1 21 0 3 749 30 45 0 0 chr3L 21516098 21516142 -3027415 + AT_rich Low_complexity Low_complexity 1 44 0 3 749 23 0 0 0 chr3L 21519025 21519048 -3024509 + AT_rich Low_complexity Low_complexity 1 23 0 3 749 252 175 70 0 chr3L 21527059 21527116 -3016441 + DNAREP1_DM LINE Penelope 534 594 0 3 749 21 57 0 0 chr3L 21532748 21532783 -3010774 + AT_rich Low_complexity Low_complexity 1 35 0 3 749 229 304 0 0 chr3L 21533950 21534019 -3009538 + G5A_DM LINE Jockey 2125 2193 -648 3 749 230 195 0 0 chr3L 21534810 21534851 -3008706 - DNAREP1_DM LINE Penelope -524 70 30 3 749 22 35 0 0 chr3L 21534868 21534897 -3008660 + AT_rich Low_complexity Low_complexity 1 29 0 3 749 24 32 0 0 chr3L 21536224 21536255 -3007302 + AT_rich Low_complexity Low_complexity 1 31 0 3 749 23 33 0 0 chr3L 21536954 21536984 -3006573 + AT_rich Low_complexity Low_complexity 1 30 0 3 749 25 31 0 0 chr3L 21538930 21538962 -3004595 + AT_rich Low_complexity Low_complexity 1 32 0 3 749 22 35 0 0 chr3L 21540584 21540613 -3002944 + AT_rich Low_complexity Low_complexity 1 29 0 3 749 228 348 0 17 chr3L 21542445 21542626 -3000931 + (CTG)n Simple_repeat Simple_repeat 1 178 0 3 749 346 160 0 78 chr3L 21543011 21543126 -3000431 - ROO_I LTR Pao -7512 744 639 3 749 180 216 0 0 chr3L 21543345 21543396 -3000161 + (CTG)n Simple_repeat Simple_repeat 2 52 0 3 749 218 182 0 0 chr3L 21543911 21543955 -2999602 + CT-rich Low_complexity Low_complexity 2 45 0 3 749 23 33 0 0 chr3L 21547054 21547084 -2996473 + AT_rich Low_complexity Low_complexity 1 30 0 3 749 21 0 0 0 chr3L 21548433 21548454 -2995103 + AT_rich Low_complexity Low_complexity 1 21 0 3 749 23 54 0 0 chr3L 21548711 21548748 -2994809 + AT_rich Low_complexity Low_complexity 1 37 0 3 749 336 226 0 0 chr3L 21549897 21549990 -2993567 - ROO_I LTR Pao -7523 733 641 3 749 193 188 15 30 chr3L 21555334 21555400 -2988157 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 3 749 635 191 155 30 chr3L 21555453 21555653 -2987904 - DNAREP1_DM LINE Penelope 0 594 370 3 749 25 0 0 0 chr3L 21557677 21557702 -2985855 + AT_rich Low_complexity Low_complexity 1 25 0 3 749 248 67 0 0 chr3L 21560973 21561003 -2982554 + DNAREP1_DM LINE Penelope 444 473 -121 3 749 27 0 0 0 chr3L 21561084 21561111 -2982446 + AT_rich Low_complexity Low_complexity 1 27 0 3 749 232 288 0 0 chr3L 21561269 21561335 -2982222 + CT-rich Low_complexity Low_complexity 6 71 0 3 749 28 29 0 0 chr3L 21563619 21563654 -2979903 + AT_rich Low_complexity Low_complexity 1 35 0 3 749 213 119 0 0 chr3L 21566914 21566956 -2976601 + (TA)n Simple_repeat Simple_repeat 2 43 0 3 749 197 33 33 0 chr3L 21569105 21569135 -2974422 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 3 749 25 0 0 0 chr3L 21570261 21570286 -2973271 + AT_rich Low_complexity Low_complexity 1 25 0 3 749 26 50 0 0 chr3L 21575286 21575326 -2968231 + AT_rich Low_complexity Low_complexity 1 40 0 3 749 23 54 0 0 chr3L 21577581 21577618 -2965939 + AT_rich Low_complexity Low_complexity 1 37 0 3 749 202 250 0 54 chr3L 21579234 21579327 -2964230 + (CTGGGG)n Simple_repeat Simple_repeat 1 88 0 3 749 195 100 0 0 chr3L 21579407 21579437 -2964120 + (CGGAG)n Simple_repeat Simple_repeat 1 30 0 3 749 521 199 0 29 chr3L 21581820 21581960 -2961597 + SAR_DM Satellite Satellite 494 629 -843 3 749 368 147 0 68 chr3L 21583661 21583734 -2959823 - DNAREP1_DM LINE Penelope 0 594 527 3 749 272 83 21 0 chr3L 21589503 21589551 -2954006 + (CGAT)n Simple_repeat Simple_repeat 2 50 0 3 749 192 40 0 0 chr3L 21589665 21589690 -2953867 + (CACTC)n Simple_repeat Simple_repeat 4 28 0 3 749 387 125 0 0 chr3L 21591837 21591909 -2951648 + (CAG)n Simple_repeat Simple_repeat 3 74 0 3 749 283 177 0 20 chr3L 21592021 21592119 -2951438 + (CCGAA)n Simple_repeat Simple_repeat 4 99 0 3 749 185 0 0 39 chr3L 21594204 21594230 -2949327 + (GTTTG)n Simple_repeat Simple_repeat 5 29 0 3 749 25 0 0 0 chr3L 21597104 21597129 -2946428 + AT_rich Low_complexity Low_complexity 1 25 0 3 749 25 31 0 0 chr3L 21598081 21598113 -2945444 + AT_rich Low_complexity Low_complexity 1 32 0 3 749 22 0 0 0 chr3L 21599780 21599802 -2943755 + AT_rich Low_complexity Low_complexity 1 22 0 3 749 288 130 0 0 chr3L 21601061 21601107 -2942450 + (TCCA)n Simple_repeat Simple_repeat 2 47 0 3 749 21 0 0 0 chr3L 21606129 21606150 -2937407 + AT_rich Low_complexity Low_complexity 1 21 0 3 749 274 154 379 68 chr3L 21606709 21606825 -2936732 + DNAREP1_DM LINE Penelope 418 569 -25 3 749 22 0 0 0 chr3L 21613354 21613376 -2930181 + AT_rich Low_complexity Low_complexity 1 22 0 3 749 21 82 0 0 chr3L 21613679 21613728 -2929829 + AT_rich Low_complexity Low_complexity 1 49 0 3 749 26 30 0 0 chr3L 21615758 21615791 -2927766 + AT_rich Low_complexity Low_complexity 1 33 0 3 749 24 32 0 0 chr3L 21616966 21616997 -2926560 + AT_rich Low_complexity Low_complexity 1 31 0 3 749 27 62 0 0 chr3L 21617035 21617083 -2926474 + AT_rich Low_complexity Low_complexity 1 48 0 3 749 40 37 0 0 chr3L 21617131 21617185 -2926372 + AT_rich Low_complexity Low_complexity 1 54 0 3 749 30 45 0 0 chr3L 21617453 21617497 -2926060 + AT_rich Low_complexity Low_complexity 1 44 0 3 749 185 0 40 0 chr3L 21617635 21617660 -2925897 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 3 749 25 0 0 0 chr3L 21618028 21618053 -2925504 + AT_rich Low_complexity Low_complexity 1 25 0 3 749 194 0 39 0 chr3L 21618249 21618275 -2925282 + (TATAA)n Simple_repeat Simple_repeat 3 29 0 3 749 305 270 0 35 chr3L 21622773 21622888 -2920669 + (CTG)n Simple_repeat Simple_repeat 2 112 0 3 750 22 0 0 0 chr3L 21627914 21627936 -2915621 + AT_rich Low_complexity Low_complexity 1 22 0 3 750 22 0 0 0 chr3L 21628909 21628931 -2914626 + AT_rich Low_complexity Low_complexity 1 22 0 3 750 24 53 0 0 chr3L 21629319 21629357 -2914200 + AT_rich Low_complexity Low_complexity 1 38 0 3 750 277 213 242 11 chr3L 21630523 21630618 -2912939 - DNAREP1_DM LINE Penelope -29 565 449 3 750 2386 7 0 0 chr3L 21630743 21631015 -2912542 - FW_DM LINE Jockey 0 4692 4421 3 750 292 143 0 0 chr3L 21631025 21631074 -2912483 - DMRP1 Unknown Unknown -56 290 242 3 750 490 157 12 0 chr3L 21631075 21631158 -2912399 - DMRP1 Unknown Unknown -259 87 4 3 750 189 0 0 0 chr3L 21634267 21634288 -2909269 + (CAG)n Simple_repeat Simple_repeat 1 21 0 3 750 189 0 0 0 chr3L 21639371 21639392 -2904165 + (A)n Simple_repeat Simple_repeat 1 21 0 3 750 22 0 0 0 chr3L 21639409 21639431 -2904126 + AT_rich Low_complexity Low_complexity 1 22 0 3 750 293 217 175 117 chr3L 21639725 21639845 -2903712 - DNAREP1_DM LINE Penelope -34 560 434 3 750 293 125 0 0 chr3L 21640022 21640062 -2903495 - DNAREP1_DM LINE Penelope -533 61 22 3 750 30 27 0 0 chr3L 21645847 21645884 -2897673 + AT_rich Low_complexity Low_complexity 1 37 0 3 750 233 224 0 0 chr3L 21648125 21648183 -2895374 + (CAT)n Simple_repeat Simple_repeat 1 58 0 3 750 33 25 0 0 chr3L 21651279 21651319 -2892238 + AT_rich Low_complexity Low_complexity 1 40 0 3 750 380 129 28 14 chr3L 21652770 21652841 -2890716 + DNAREP1_DM LINE Penelope 514 585 -9 3 750 251 225 118 59 chr3L 21655902 21655987 -2887570 - DNAREP1_DM LINE Penelope -141 453 364 3 750 245 319 0 0 chr3L 21660903 21660975 -2882582 + G-rich Low_complexity Low_complexity 5 76 0 3 750 211 163 20 20 chr3L 21661967 21662017 -2881540 + (ATTTG)n Simple_repeat Simple_repeat 2 51 0 3 750 240 100 0 0 chr3L 21662187 21662227 -2881330 + (ATG)n Simple_repeat Simple_repeat 1 40 0 3 750 213 139 0 0 chr3L 21662829 21662872 -2880685 + (TG)n Simple_repeat Simple_repeat 1 43 0 3 750 230 213 59 118 chr3L 21664984 21665069 -2878488 + DNAREP1_DM LINE Penelope 375 454 -140 3 750 22 0 0 0 chr3L 21676175 21676197 -2867360 + AT_rich Low_complexity Low_complexity 1 22 0 3 750 23 0 0 0 chr3L 21678001 21678024 -2865533 + AT_rich Low_complexity Low_complexity 1 23 0 3 750 23 0 0 0 chr3L 21678058 21678081 -2865476 + AT_rich Low_complexity Low_complexity 1 23 0 3 750 30 0 0 0 chr3L 21678096 21678126 -2865431 + AT_rich Low_complexity Low_complexity 1 30 0 3 750 228 267 13 13 chr3L 21678804 21678880 -2864677 - ROO_I LTR Pao -7508 748 673 3 750 33 0 0 0 chr3L 21683623 21683656 -2859901 + AT_rich Low_complexity Low_complexity 1 33 0 3 750 218 217 0 21 chr3L 21684011 21684058 -2859499 + (ATG)n Simple_repeat Simple_repeat 1 46 0 3 750 25 0 0 0 chr3L 21684616 21684641 -2858916 + AT_rich Low_complexity Low_complexity 1 25 0 3 750 208 211 0 0 chr3L 21685435 21685473 -2858084 + (TGG)n Simple_repeat Simple_repeat 3 40 0 3 750 258 116 0 0 chr3L 21685724 21685767 -2857790 + (CATCC)n Simple_repeat Simple_repeat 2 44 0 3 750 234 128 0 0 chr3L 21687526 21687565 -2855992 + (TGG)n Simple_repeat Simple_repeat 3 41 0 3 750 180 0 0 0 chr3L 21688088 21688108 -2855449 + (ATG)n Simple_repeat Simple_repeat 1 20 0 3 750 243 254 0 0 chr3L 21689432 21689499 -2854058 + (TATATG)n Simple_repeat Simple_repeat 1 67 0 3 750 224 262 0 0 chr3L 21690892 21690953 -2852604 + (CATCC)n Simple_repeat Simple_repeat 5 65 0 3 750 204 227 0 0 chr3L 21692020 21692064 -2851493 + (CAT)n Simple_repeat Simple_repeat 1 44 0 3 750 225 154 0 0 chr3L 21695241 21695280 -2848277 + (GATTG)n Simple_repeat Simple_repeat 4 42 0 3 750 252 269 0 0 chr3L 21699005 21699072 -2844485 + (TGG)n Simple_repeat Simple_repeat 3 69 0 3 750 241 204 0 0 chr3L 21701955 21701999 -2841558 + DNAREP1_DM LINE Penelope 447 490 -104 3 750 243 103 0 0 chr3L 21703119 21703158 -2840399 + (CATCC)n Simple_repeat Simple_repeat 4 42 0 3 750 26 30 0 0 chr3L 21703397 21703430 -2840127 + AT_rich Low_complexity Low_complexity 1 33 0 3 750 22 35 0 0 chr3L 21705929 21705958 -2837599 + AT_rich Low_complexity Low_complexity 1 29 0 3 750 208 274 0 0 chr3L 21708867 21708918 -2834639 + (CAG)n Simple_repeat Simple_repeat 2 52 0 3 750 189 154 0 0 chr3L 21713616 21713655 -2829902 + (CAA)n Simple_repeat Simple_repeat 1 39 0 3 750 33 43 0 0 chr3L 21717168 21717215 -2826342 + AT_rich Low_complexity Low_complexity 1 47 0 3 750 54 49 0 0 chr3L 21719141 21719223 -2824334 + AT_rich Low_complexity Low_complexity 1 82 0 3 750 218 310 11 22 chr3L 21720097 21720186 -2823371 + (CAGAGA)n Simple_repeat Simple_repeat 4 91 0 3 750 23 0 0 0 chr3L 21723789 21723812 -2819745 + AT_rich Low_complexity Low_complexity 1 23 0 3 750 261 145 0 114 chr3L 21723933 21724003 -2819554 - PROTOP_B DNA P -611 542 481 3 750 1858 119 284 4 chr3L 21725210 21725674 -2817883 - DNAREP1_DM LINE Penelope 0 594 1 3 750 29 0 0 0 chr3L 21725917 21725946 -2817611 + AT_rich Low_complexity Low_complexity 1 29 0 3 750 27 29 0 0 chr3L 21728146 21728180 -2815377 + AT_rich Low_complexity Low_complexity 1 34 0 3 750 24 53 0 0 chr3L 21728653 21728691 -2814866 + AT_rich Low_complexity Low_complexity 1 38 0 3 750 510 221 184 0 chr3L 21728698 21728834 -2814723 + DNAREP1_DM LINE Penelope 432 592 -2 3 750 23 68 0 0 chr3L 21729245 21729289 -2814268 + AT_rich Low_complexity Low_complexity 1 44 0 3 750 684 237 21 36 chr3L 21730040 21730233 -2813324 + DNAREP1_DM LINE Penelope 2 191 -403 3 750 637 179 109 29 chr3L 21730315 21730453 -2813104 + DNAREP1_DM LINE Penelope 420 568 -26 3 750 21 0 0 0 chr3L 21731621 21731642 -2811915 + AT_rich Low_complexity Low_complexity 1 21 0 3 750 28 0 0 0 chr3L 21733882 21733910 -2809647 + AT_rich Low_complexity Low_complexity 1 28 0 3 750 22 0 0 0 chr3L 21737794 21737816 -2805741 + AT_rich Low_complexity Low_complexity 1 22 0 3 750 200 185 19 0 chr3L 21742042 21742096 -2801461 + (TTG)n Simple_repeat Simple_repeat 3 57 0 3 750 21 0 0 0 chr3L 21742424 21742445 -2801112 + AT_rich Low_complexity Low_complexity 1 21 0 3 750 359 17 0 159 chr3L 21742483 21742552 -2801005 - LINEJ1_DM LINE Jockey 0 5020 4963 3 750 43647 0 0 0 chr3L 21742542 21747264 -2796293 + DOC LINE Jockey 2 4722 -3 3 750 2778 0 0 3 chr3L 21747263 21747570 -2795987 - LINEJ1_DM LINE Jockey -40 4980 4675 3 750 29 28 0 0 chr3L 21749650 21749686 -2793871 + AT_rich Low_complexity Low_complexity 1 36 0 3 750 228 170 0 0 chr3L 21752280 21752333 -2791224 + (CCAA)n Simple_repeat Simple_repeat 2 54 0 3 750 185 0 40 0 chr3L 21755454 21755479 -2788078 + (CTG)n Simple_repeat Simple_repeat 2 27 0 3 750 33 0 0 0 chr3L 21756573 21756606 -2786951 + AT_rich Low_complexity Low_complexity 1 33 0 3 750 234 245 0 0 chr3L 21757468 21757521 -2786036 + (TG)n Simple_repeat Simple_repeat 1 53 0 3 751 21 36 0 0 chr3L 21758964 21758992 -2784565 + AT_rich Low_complexity Low_complexity 1 28 0 3 751 1178 89 12 6 chr3L 21759522 21759692 -2783865 - Transib-N1_DM DNA Transib 0 514 344 3 751 25 0 0 0 chr3L 21759724 21759749 -2783808 + AT_rich Low_complexity Low_complexity 1 25 0 3 751 556 55 264 0 chr3L 21759810 21759901 -2783656 - Transib-N1_DM DNA Transib -399 115 1 3 751 623 72 126 0 chr3L 21761841 21761952 -2781605 + G2_DM LINE Jockey 2971 3095 -7 3 751 23 0 0 0 chr3L 21762005 21762028 -2781529 + AT_rich Low_complexity Low_complexity 1 23 0 3 751 197 151 0 19 chr3L 21763162 21763216 -2780341 + T-rich Low_complexity Low_complexity 2 54 0 3 751 26 0 0 0 chr3L 21763807 21763833 -2779724 + AT_rich Low_complexity Low_complexity 1 26 0 3 751 33 25 0 0 chr3L 21764187 21764227 -2779330 + AT_rich Low_complexity Low_complexity 1 40 0 3 751 34 42 0 0 chr3L 21765953 21766001 -2777556 + AT_rich Low_complexity Low_complexity 1 48 0 3 751 32 26 0 0 chr3L 21766407 21766446 -2777111 + AT_rich Low_complexity Low_complexity 1 39 0 3 751 25 31 0 0 chr3L 21769857 21769889 -2773668 + AT_rich Low_complexity Low_complexity 1 32 0 3 751 21 0 0 0 chr3L 21771474 21771495 -2772062 + AT_rich Low_complexity Low_complexity 1 21 0 3 751 25 31 0 0 chr3L 21774510 21774542 -2769015 + AT_rich Low_complexity Low_complexity 1 32 0 3 751 237 108 0 0 chr3L 21775956 21775993 -2767564 + (GTTTG)n Simple_repeat Simple_repeat 5 41 0 3 751 24 0 0 0 chr3L 21777906 21777930 -2765627 + AT_rich Low_complexity Low_complexity 1 24 0 3 751 42 57 0 0 chr3L 21779864 21779934 -2763623 + AT_rich Low_complexity Low_complexity 1 70 0 3 751 262 180 0 47 chr3L 21780109 21780173 -2763384 - DNAREP1_DM LINE Penelope -533 61 1 3 751 183 80 0 0 chr3L 21783572 21783597 -2759960 + (CCCCAG)n Simple_repeat Simple_repeat 5 29 0 3 751 28 29 0 0 chr3L 21788335 21788370 -2755187 + AT_rich Low_complexity Low_complexity 1 35 0 3 751 189 0 0 0 chr3L 21789000 21789021 -2754536 + (TTA)n Simple_repeat Simple_repeat 1 21 0 3 751 23 97 0 0 chr3L 21790523 21790595 -2752962 + AT_rich Low_complexity Low_complexity 1 72 0 3 751 183 80 0 0 chr3L 21791363 21791388 -2752169 + (CTGGGG)n Simple_repeat Simple_repeat 6 30 0 3 751 201 158 0 0 chr3L 21793663 21793701 -2749856 + GA-rich Low_complexity Low_complexity 3 40 0 3 751 304 250 26 0 chr3L 21794232 21794308 -2749249 + DNAREP1_DM LINE Penelope 381 458 -136 3 751 309 109 0 0 chr3L 21794328 21794374 -2749183 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 3 751 351 68 0 0 chr3L 21794375 21794419 -2749138 + G3_DM LINE Jockey 4542 4585 -20 3 751 32 26 0 0 chr3L 21794481 21794520 -2749037 + AT_rich Low_complexity Low_complexity 1 39 0 3 751 189 74 0 0 chr3L 21795968 21795995 -2747562 + (CAAT)n Simple_repeat Simple_repeat 4 30 0 3 751 208 147 0 0 chr3L 21799102 21799136 -2744421 + (TTG)n Simple_repeat Simple_repeat 1 34 0 3 751 24 77 0 0 chr3L 21799550 21799602 -2743955 + AT_rich Low_complexity Low_complexity 1 52 0 3 751 44 35 0 0 chr3L 21801545 21801603 -2741954 + AT_rich Low_complexity Low_complexity 1 58 0 3 751 251 179 15 0 chr3L 21801835 21801902 -2741655 + (CTG)n Simple_repeat Simple_repeat 1 68 0 3 751 247 0 127 0 chr3L 21803096 21803159 -2740398 + (TGGA)n Simple_repeat Simple_repeat 2 72 0 3 751 264 264 0 0 chr3L 21803325 21803378 -2740179 + (TTCGGG)n Simple_repeat Simple_repeat 5 57 0 3 751 813 137 0 0 chr3L 21805229 21805397 -2738160 + (TAA)n Simple_repeat Simple_repeat 3 170 0 3 751 205 86 29 0 chr3L 21805397 21805432 -2738125 + (TTATA)n Simple_repeat Simple_repeat 5 40 0 3 751 1449 39 0 0 chr3L 21805432 21805612 -2737945 + (TAA)n Simple_repeat Simple_repeat 1 180 0 3 751 21 36 0 0 chr3L 21805701 21805729 -2737828 + AT_rich Low_complexity Low_complexity 1 28 0 3 751 22 0 0 0 chr3L 21805841 21805863 -2737694 + AT_rich Low_complexity Low_complexity 1 22 0 3 751 198 128 0 0 chr3L 21805903 21805942 -2737615 + (CTATA)n Simple_repeat Simple_repeat 3 41 0 3 751 1016 147 86 61 chr3L 21806932 21807231 -2736326 - DNAREP1_DM LINE Penelope -144 450 20 3 751 24 0 0 0 chr3L 21807406 21807430 -2736127 + AT_rich Low_complexity Low_complexity 1 24 0 3 751 21 0 0 0 chr3L 21808841 21808862 -2734695 + AT_rich Low_complexity Low_complexity 1 21 0 3 751 386 244 131 19 chr3L 21808919 21809176 -2734381 + DNAREP1_DM LINE Penelope 32 261 -333 3 751 27 0 0 0 chr3L 21811001 21811028 -2732529 + AT_rich Low_complexity Low_complexity 1 27 0 3 751 303 136 0 0 chr3L 21812778 21812837 -2730720 + (CAGT)n Simple_repeat Simple_repeat 3 61 0 3 751 28 48 0 0 chr3L 21813189 21813231 -2730326 + AT_rich Low_complexity Low_complexity 1 42 0 3 751 250 125 0 0 chr3L 21813937 21813977 -2729580 + PROTOP_B DNA P 506 545 -608 3 751 283 234 234 0 chr3L 21814040 21814134 -2729423 + DNAREP1_DM LINE Penelope 431 546 -48 3 751 26 50 0 0 chr3L 21814776 21814816 -2728741 + AT_rich Low_complexity Low_complexity 1 40 0 3 751 25 0 0 0 chr3L 21816484 21816509 -2727048 + AT_rich Low_complexity Low_complexity 1 25 0 3 751 33 25 0 0 chr3L 21823502 21823542 -2720015 + AT_rich Low_complexity Low_complexity 1 40 0 3 751 23 0 0 0 chr3L 21823655 21823678 -2719879 + AT_rich Low_complexity Low_complexity 1 23 0 3 751 231 125 0 0 chr3L 21825456 21825496 -2718061 + (TA)n Simple_repeat Simple_repeat 1 40 0 3 751 603 174 0 0 chr3L 21825523 21825667 -2717890 + (TA)n Simple_repeat Simple_repeat 1 144 0 3 751 231 252 0 0 chr3L 21828758 21828869 -2714688 + (CGG)n Simple_repeat Simple_repeat 2 112 0 3 751 25 31 0 0 chr3L 21830207 21830239 -2713318 + AT_rich Low_complexity Low_complexity 1 32 0 3 751 189 94 0 0 chr3L 21836591 21836623 -2706934 + (TC)n Simple_repeat Simple_repeat 2 33 0 3 751 180 125 0 0 chr3L 21837831 21837863 -2705694 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 751 42 48 0 0 chr3L 21839839 21839902 -2703655 + AT_rich Low_complexity Low_complexity 1 63 0 3 751 23 0 0 0 chr3L 21840229 21840252 -2703305 + AT_rich Low_complexity Low_complexity 1 23 0 3 751 26 64 0 0 chr3L 21842792 21842839 -2700718 + AT_rich Low_complexity Low_complexity 1 47 0 3 751 285 29 0 0 chr3L 21843491 21843525 -2700032 + (CCCTG)n Simple_repeat Simple_repeat 2 35 0 3 751 180 77 0 0 chr3L 21843541 21843567 -2699990 + (TCTA)n Simple_repeat Simple_repeat 2 27 0 3 751 31 26 0 0 chr3L 21844275 21844313 -2699244 + AT_rich Low_complexity Low_complexity 1 38 0 3 751 24 0 0 0 chr3L 21845365 21845389 -2698168 + AT_rich Low_complexity Low_complexity 1 24 0 3 751 23 0 0 0 chr3L 21847419 21847442 -2696115 + AT_rich Low_complexity Low_complexity 1 23 0 3 751 186 103 0 0 chr3L 21847674 21847703 -2695854 + (TTCTG)n Simple_repeat Simple_repeat 1 29 0 3 751 919 240 110 10 chr3L 21850161 21850451 -2693106 + DNAREP1_DM LINE Penelope 275 593 -1 3 751 251 174 165 52 chr3L 21850365 21850462 -2693095 - P_DG DNA P -33 2855 2748 3 751 225 219 0 0 chr3L 21850859 21850932 -2692625 + (CAGT)n Simple_repeat Simple_repeat 1 73 0 3 751 761 99 111 34 chr3L 21851508 21851774 -2691783 + DNAREP1_DM LINE Penelope 1 325 -269 3 751 226 100 0 0 chr3L 21851771 21851801 -2691756 + DNAREP1_DM LINE Penelope 461 490 -104 3 751 214 50 0 48 chr3L 21851806 21851848 -2691709 + (TTATA)n Simple_repeat Simple_repeat 5 44 0 3 751 21 0 0 0 chr3L 21852042 21852063 -2691494 + AT_rich Low_complexity Low_complexity 1 21 0 3 751 26 64 0 0 chr3L 21852898 21852945 -2690612 + AT_rich Low_complexity Low_complexity 1 47 0 3 751 56 16 0 0 chr3L 21852972 21853035 -2690522 + AT_rich Low_complexity Low_complexity 1 63 0 3 751 207 88 0 0 chr3L 21854447 21854481 -2689076 + (A)n Simple_repeat Simple_repeat 1 34 0 3 751 192 97 0 0 chr3L 21854905 21854936 -2688621 + (CCCA)n Simple_repeat Simple_repeat 3 33 0 3 751 418 189 276 0 chr3L 21855265 21855392 -2688165 - DNAREP1_DM LINE Penelope -2 592 431 3 751 265 157 0 73 chr3L 21855405 21855460 -2688097 - DNAREP1_DM LINE Penelope -149 445 395 3 751 233 217 0 0 chr3L 21858687 21858733 -2684824 + (TCTG)n Simple_repeat Simple_repeat 3 48 0 3 751 225 0 0 0 chr3L 21859617 21859642 -2683915 + (TG)n Simple_repeat Simple_repeat 2 26 0 3 751 22 56 0 0 chr3L 21860246 21860282 -2683275 + AT_rich Low_complexity Low_complexity 1 36 0 3 751 358 103 17 0 chr3L 21861568 21861626 -2681931 - DNAREP1_DM LINE Penelope -1 593 535 3 751 23 33 0 0 chr3L 21862227 21862257 -2681300 + AT_rich Low_complexity Low_complexity 1 30 0 3 751 31 0 0 0 chr3L 21862337 21862368 -2681189 + AT_rich Low_complexity Low_complexity 1 31 0 3 751 22 0 0 0 chr3L 21862958 21862980 -2680577 + AT_rich Low_complexity Low_complexity 1 22 0 3 751 25 0 0 0 chr3L 21863352 21863377 -2680180 + AT_rich Low_complexity Low_complexity 1 25 0 3 751 180 0 0 0 chr3L 21865008 21865028 -2678529 + (CA)n Simple_repeat Simple_repeat 1 20 0 3 751 35 41 0 0 chr3L 21865322 21865371 -2678186 + AT_rich Low_complexity Low_complexity 1 49 0 3 751 334 69 35 0 chr3L 21867230 21867288 -2676269 + (TA)n Simple_repeat Simple_repeat 2 61 0 3 751 26 50 0 0 chr3L 21869473 21869513 -2674044 + AT_rich Low_complexity Low_complexity 1 40 0 3 751 22 0 0 0 chr3L 21870017 21870039 -2673518 + AT_rich Low_complexity Low_complexity 1 22 0 3 751 22 0 0 0 chr3L 21870132 21870154 -2673403 + AT_rich Low_complexity Low_complexity 1 22 0 3 751 1335 131 219 10 chr3L 21870735 21871045 -2672512 + DNAREP1_DM LINE Penelope 98 587 -7 3 751 1448 159 137 104 chr3L 21871857 21872355 -2671202 + Transib-N1_DM DNA Transib 1 514 0 3 751 225 0 0 0 chr3L 21873251 21873276 -2670281 + (TA)n Simple_repeat Simple_repeat 2 26 0 3 751 2440 11 0 0 chr3L 21874291 21874557 -2669000 - Invader2_LTR LTR Gypsy 0 266 1 3 751 21 36 0 0 chr3L 21875786 21875814 -2667743 + AT_rich Low_complexity Low_complexity 1 28 0 3 751 241 284 0 0 chr3L 21876154 21876221 -2667336 + (TCG)n Simple_repeat Simple_repeat 3 69 0 3 751 23 0 0 0 chr3L 21880614 21880637 -2662920 + AT_rich Low_complexity Low_complexity 1 23 0 3 751 219 114 0 0 chr3L 21880910 21880945 -2662612 + (ACTG)n Simple_repeat Simple_repeat 2 36 0 3 751 201 256 0 0 chr3L 21887868 21887911 -2655646 + (CATA)n Simple_repeat Simple_repeat 3 45 0 3 751 246 81 0 0 chr3L 21888035 21888072 -2655485 + (CAG)n Simple_repeat Simple_repeat 1 37 0 3 752 21 36 0 0 chr3L 21891121 21891149 -2652408 + AT_rich Low_complexity Low_complexity 1 28 0 3 752 21 0 0 0 chr3L 21891702 21891723 -2651834 + AT_rich Low_complexity Low_complexity 1 21 0 3 752 25 0 0 0 chr3L 21892090 21892115 -2651442 + AT_rich Low_complexity Low_complexity 1 25 0 3 752 201 108 0 0 chr3L 21892493 21892530 -2651027 + (GTCTG)n Simple_repeat Simple_repeat 1 37 0 3 752 191 88 0 29 chr3L 21893591 21893626 -2649931 + (ATG)n Simple_repeat Simple_repeat 1 34 0 3 752 22 0 0 0 chr3L 21894582 21894604 -2648953 + AT_rich Low_complexity Low_complexity 1 22 0 3 752 21 0 0 0 chr3L 21896829 21896850 -2646707 + AT_rich Low_complexity Low_complexity 1 21 0 3 752 231 290 0 28 chr3L 21897364 21897435 -2646122 + (CGA)n Simple_repeat Simple_repeat 2 70 0 3 752 27 0 0 0 chr3L 21901737 21901764 -2641793 + AT_rich Low_complexity Low_complexity 1 27 0 3 752 21 57 0 0 chr3L 21905402 21905437 -2638120 + AT_rich Low_complexity Low_complexity 1 35 0 3 752 242 143 16 0 chr3L 21910449 21910512 -2633045 + (CAGTA)n Simple_repeat Simple_repeat 1 64 0 3 752 261 0 0 0 chr3L 21915120 21915149 -2628408 + (A)n Simple_repeat Simple_repeat 1 29 0 3 752 316 38 0 71 chr3L 21917841 21917897 -2625660 + (CATA)n Simple_repeat Simple_repeat 1 52 0 3 752 220 310 8 8 chr3L 21918387 21918504 -2625053 + (CAG)n Simple_repeat Simple_repeat 2 118 0 3 752 264 215 0 0 chr3L 21918435 21918500 -2625057 + GA-rich Low_complexity Low_complexity 6 70 0 3 752 23 33 0 0 chr3L 21919192 21919222 -2624335 + AT_rich Low_complexity Low_complexity 1 30 0 3 752 21 36 0 0 chr3L 21920013 21920041 -2623516 + AT_rich Low_complexity Low_complexity 1 28 0 3 752 265 123 15 15 chr3L 21920780 21920846 -2622711 + (TA)n Simple_repeat Simple_repeat 1 66 0 3 752 204 233 0 0 chr3L 21922729 21922772 -2620785 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 3 752 24 53 0 0 chr3L 21922979 21923017 -2620540 + AT_rich Low_complexity Low_complexity 1 38 0 3 752 192 158 0 0 chr3L 21924934 21924972 -2618585 + (CA)n Simple_repeat Simple_repeat 1 38 0 3 752 479 112 11 0 chr3L 21925280 21925369 -2618188 + (TA)n Simple_repeat Simple_repeat 2 91 0 3 752 222 111 0 62 chr3L 21925726 21925774 -2617783 + GA-rich Low_complexity Low_complexity 3 47 0 3 752 317 230 0 0 chr3L 21925903 21925977 -2617580 - DNAREP1_DM LINE Penelope 0 594 521 3 752 367 155 0 17 chr3L 21928999 21929058 -2614499 - DNAREP1_DM LINE Penelope -150 444 387 3 752 273 184 110 44 chr3L 21929085 21929176 -2614381 - DNAREP1_DM LINE Penelope -267 327 231 3 752 263 163 0 0 chr3L 21929201 21929244 -2614313 - PROTOP_B DNA P -607 546 504 3 752 757 164 97 16 chr3L 21939328 21939490 -2604067 - DNAREP1_DM LINE Penelope -2 592 431 3 752 283 148 0 36 chr3L 21939475 21939531 -2604026 - DNAREP1_DM LINE Penelope -281 313 260 3 752 258 200 100 0 chr3L 21939599 21939659 -2603898 - DNAREP1_DM LINE Penelope -101 493 428 3 752 21 57 0 0 chr3L 21945354 21945389 -2598168 + AT_rich Low_complexity Low_complexity 1 35 0 3 752 1006 141 0 61 chr3L 21945639 21945851 -2597706 + M4DM DNA Transib 161 359 -1076 3 752 287 266 68 68 chr3L 21945843 21945976 -2597581 - TRANSIB1 DNA Transib -702 2312 2180 3 752 22 35 0 0 chr3L 21947515 21947544 -2596013 + AT_rich Low_complexity Low_complexity 1 29 0 3 752 1423 79 10 10 chr3L 21947618 21947822 -2595735 + DNAREP1_DM LINE Penelope 1 204 -390 3 752 547 73 395 0 chr3L 21947831 21947940 -2595617 + DNAREP1_DM LINE Penelope 443 594 0 3 752 617 53 0 0 chr3L 21947952 21948027 -2595530 + DNAREP1_DM LINE Penelope 520 594 0 3 752 1457 124 167 15 chr3L 21951565 21951864 -2591693 - DNAREP1_DM LINE Penelope -49 545 85 3 752 2591 25 164 0 chr3L 21951868 21952236 -2591321 + ROO_LTR LTR Pao 1 428 0 3 752 1457 124 167 15 chr3L 21954027 21954326 -2589231 - DNAREP1_DM LINE Penelope -49 545 85 3 752 2591 25 164 0 chr3L 21954330 21954698 -2588859 + ROO_LTR LTR Pao 1 428 0 3 752 267 88 0 0 chr3L 21959775 21959809 -2583748 - DNAREP1_DM LINE Penelope -130 464 431 3 752 22 35 0 0 chr3L 21977351 21977380 -2566177 + AT_rich Low_complexity Low_complexity 1 29 0 3 752 33 0 0 0 chr3L 21977797 21977830 -2565727 + AT_rich Low_complexity Low_complexity 1 33 0 3 752 35 0 0 0 chr3L 21987140 21987175 -2556382 + AT_rich Low_complexity Low_complexity 1 35 0 3 752 261 155 0 0 chr3L 21989424 21989482 -2554075 + GA-rich Low_complexity Low_complexity 1 58 0 3 752 314 91 52 0 chr3L 22000263 22000340 -2543217 + (TTATA)n Simple_repeat Simple_repeat 5 85 0 3 752 371 281 0 0 chr3L 22000464 22000560 -2542997 + DNAREP1_DM LINE Penelope 17 112 -482 3 752 225 132 0 0 chr3L 22004591 22004629 -2538928 + (CATCC)n Simple_repeat Simple_repeat 5 42 0 3 752 22 35 0 0 chr3L 22005514 22005543 -2538014 + AT_rich Low_complexity Low_complexity 1 29 0 3 752 601 210 67 0 chr3L 22006804 22006923 -2536634 - DNAREP1_DM LINE Penelope -97 497 371 3 752 285 98 0 0 chr3L 22008579 22008620 -2534937 + (GCTTG)n Simple_repeat Simple_repeat 2 42 0 3 752 273 175 32 0 chr3L 22008825 22008888 -2534669 + ROO_I LTR Pao 665 729 -7527 3 752 344 182 61 0 chr3L 22009781 22009847 -2533710 - DNAREP1_DM LINE Penelope -82 512 443 3 752 573 107 12 0 chr3L 22010205 22010289 -2533268 + DNAREP1_DM LINE Penelope 36 120 -474 3 752 1043 65 344 4 chr3L 22010292 22010522 -2533035 + DNAREP1_DM LINE Penelope 283 590 -4 3 752 448 241 67 8 chr3L 22014245 22014379 -2529178 + DNAREP1_DM LINE Penelope 1 142 -452 3 752 543 157 148 0 chr3L 22014384 22014499 -2529058 + DNAREP1_DM LINE Penelope 450 581 -13 3 752 28 29 0 0 chr3L 22016281 22016316 -2527241 + AT_rich Low_complexity Low_complexity 1 35 0 3 752 216 200 0 0 chr3L 22017386 22017431 -2526126 + CT-rich Low_complexity Low_complexity 2 46 0 3 752 29 28 0 0 chr3L 22019319 22019355 -2524202 + AT_rich Low_complexity Low_complexity 1 36 0 3 753 314 211 0 0 chr3L 22021809 22021866 -2521691 - DNAREP1_DM LINE Penelope -535 59 3 3 753 21 36 0 0 chr3L 22023328 22023356 -2520201 + AT_rich Low_complexity Low_complexity 1 28 0 3 753 23 0 0 0 chr3L 22026898 22026921 -2516636 + AT_rich Low_complexity Low_complexity 1 23 0 3 753 21 0 0 0 chr3L 22027758 22027779 -2515778 + AT_rich Low_complexity Low_complexity 1 21 0 3 753 629 180 139 148 chr3L 22029920 22030252 -2513305 + DNAREP1_DM LINE Penelope 2 330 -264 3 753 283 241 72 0 chr3L 22030332 22030415 -2513142 + DNAREP1_DM LINE Penelope 506 594 0 3 753 23 0 0 0 chr3L 22034225 22034248 -2509309 + AT_rich Low_complexity Low_complexity 1 23 0 3 753 24 32 0 0 chr3L 22037537 22037568 -2505989 + AT_rich Low_complexity Low_complexity 1 31 0 3 753 299 160 292 92 chr3L 22042764 22042919 -2500638 - DNAREP1_DM LINE Penelope -105 489 311 3 753 64 50 0 0 chr3L 22050224 22050323 -2493234 + AT_rich Low_complexity Low_complexity 1 99 0 3 753 299 172 110 105 chr3L 22054695 22054822 -2488735 - DNAREP1_DM LINE Penelope -141 453 348 3 753 23 33 0 0 chr3L 22054824 22054854 -2488703 + AT_rich Low_complexity Low_complexity 1 30 0 3 753 23 33 0 0 chr3L 22056204 22056234 -2487323 + AT_rich Low_complexity Low_complexity 1 30 0 3 753 1764 89 207 28 chr3L 22056287 22056610 -2486947 - DNAREP1_DM LINE Penelope 0 594 214 3 753 21 36 0 0 chr3L 22062422 22062450 -2481107 + AT_rich Low_complexity Low_complexity 1 28 0 3 753 471 155 0 0 chr3L 22064470 22064554 -2479003 + (TTA)n Simple_repeat Simple_repeat 2 85 0 3 753 586 71 162 10 chr3L 22065318 22065417 -2478140 + DNAREP1_DM LINE Penelope 5 118 -476 3 753 287 243 73 7 chr3L 22065598 22065735 -2477822 + DNAREP1_DM LINE Penelope 124 269 -325 3 753 329 47 43 65 chr3L 22065745 22065837 -2477720 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 3 753 850 168 48 0 chr3L 22065839 22066006 -2477551 + DNAREP1_DM LINE Penelope 241 415 -179 3 753 601 109 69 0 chr3L 22066024 22066125 -2477432 - FB4_DM DNA Tc1 -2876 1213 1106 3 753 25 31 0 0 chr3L 22066174 22066206 -2477351 + AT_rich Low_complexity Low_complexity 1 32 0 3 753 192 97 0 0 chr3L 22068198 22068229 -2475328 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 3 753 223 277 0 0 chr3L 22072081 22072146 -2471411 + (CTG)n Simple_repeat Simple_repeat 1 65 0 3 753 257 203 15 45 chr3L 22072497 22072564 -2470993 - DNAREP1_DM LINE Penelope -2 592 528 3 753 26 82 0 0 chr3L 22073668 22073729 -2469828 + AT_rich Low_complexity Low_complexity 1 61 0 3 753 21 0 0 0 chr3L 22074788 22074809 -2468748 + AT_rich Low_complexity Low_complexity 1 21 0 3 753 420 126 0 0 chr3L 22076025 22076112 -2467445 + (CAG)n Simple_repeat Simple_repeat 3 89 0 3 753 25 0 0 0 chr3L 22076485 22076510 -2467047 + AT_rich Low_complexity Low_complexity 1 25 0 3 753 281 193 0 0 chr3L 22076577 22076634 -2466923 - DNAREP1_DM LINE Penelope -535 59 3 3 753 23 54 0 0 chr3L 22078811 22078848 -2464709 + AT_rich Low_complexity Low_complexity 1 37 0 3 753 1891 20 16 12 chr3L 22079171 22079418 -2464139 - IDEFIX_I LTR Gypsy -45 5583 5336 3 753 322 231 0 127 chr3L 22082220 22082354 -2461203 - DNAREP1_DM LINE Penelope -123 471 355 3 753 510 206 13 64 chr3L 22082357 22082513 -2461044 - DNAREP1_DM LINE Penelope -437 157 10 3 753 258 81 0 0 chr3L 22082933 22082970 -2460587 + (CATTT)n Simple_repeat Simple_repeat 4 40 0 3 753 208 327 0 38 chr3L 22084866 22084971 -2458586 + G-rich Low_complexity Low_complexity 5 105 0 3 753 25 0 0 0 chr3L 22087380 22087405 -2456152 + AT_rich Low_complexity Low_complexity 1 25 0 3 753 23 0 0 0 chr3L 22091504 22091527 -2452030 + AT_rich Low_complexity Low_complexity 1 23 0 3 753 3329 6 0 0 chr3L 22092830 22093191 -2450366 + BEL_LTR LTR Pao 1 361 0 3 753 50767 1 0 0 chr3L 22093191 22098597 -2444960 + BEL_I LTR Pao 1 5404 0 3 753 3353 3 0 0 chr3L 22098597 22098958 -2444599 + BEL_LTR LTR Pao 1 361 0 3 753 186 150 0 0 chr3L 22102314 22102354 -2441203 + (GGGAA)n Simple_repeat Simple_repeat 1 40 0 3 753 240 86 0 0 chr3L 22102714 22102749 -2440808 + (CCA)n Simple_repeat Simple_repeat 1 35 0 3 753 25 31 0 0 chr3L 22106306 22106338 -2437219 + AT_rich Low_complexity Low_complexity 1 32 0 3 753 21 36 0 0 chr3L 22111258 22111286 -2432271 + AT_rich Low_complexity Low_complexity 1 28 0 3 753 856 140 77 48 chr3L 22112833 22113121 -2430436 - DMRP1 Unknown Unknown -11 335 9 3 753 21 82 0 0 chr3L 22114089 22114138 -2429419 + AT_rich Low_complexity Low_complexity 1 49 0 3 753 26 0 0 0 chr3L 22114702 22114728 -2428829 + AT_rich Low_complexity Low_complexity 1 26 0 3 753 231 88 0 0 chr3L 22114755 22114789 -2428768 + (TATG)n Simple_repeat Simple_repeat 3 36 0 3 753 291 54 0 0 chr3L 22116383 22116420 -2427137 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 753 314 80 20 0 chr3L 22116867 22116917 -2426640 + (CA)n Simple_repeat Simple_repeat 1 51 0 3 753 203 233 0 0 chr3L 22116940 22116983 -2426574 + (CTGGGG)n Simple_repeat Simple_repeat 3 45 0 3 753 195 42 0 0 chr3L 22117671 22117695 -2425862 + (CAGTG)n Simple_repeat Simple_repeat 2 25 0 3 753 22 0 0 0 chr3L 22119974 22119996 -2423561 + AT_rich Low_complexity Low_complexity 1 22 0 3 753 22 56 0 0 chr3L 22124577 22124613 -2418944 + AT_rich Low_complexity Low_complexity 1 36 0 3 753 24 0 0 0 chr3L 22125133 22125157 -2418400 + AT_rich Low_complexity Low_complexity 1 24 0 3 753 24 67 0 0 chr3L 22126982 22127027 -2416530 + AT_rich Low_complexity Low_complexity 1 45 0 3 753 186 118 0 0 chr3L 22129768 22129802 -2413755 + (TG)n Simple_repeat Simple_repeat 1 34 0 3 753 22 0 0 0 chr3L 22132789 22132811 -2410746 + AT_rich Low_complexity Low_complexity 1 22 0 3 753 210 283 0 0 chr3L 22133976 22134022 -2409535 + (CTGGGG)n Simple_repeat Simple_repeat 6 51 0 3 753 219 69 0 0 chr3L 22134964 22134993 -2408564 + (CAT)n Simple_repeat Simple_repeat 3 31 0 3 753 208 290 0 0 chr3L 22137562 22137624 -2405933 + CT-rich Low_complexity Low_complexity 2 63 0 3 753 26 0 0 0 chr3L 22139458 22139484 -2404073 + AT_rich Low_complexity Low_complexity 1 26 0 3 753 24 32 0 0 chr3L 22140058 22140089 -2403468 + AT_rich Low_complexity Low_complexity 1 31 0 3 753 183 42 0 0 chr3L 22142691 22142715 -2400842 + (T)n Simple_repeat Simple_repeat 1 24 0 3 753 21 0 0 0 chr3L 22145186 22145207 -2398350 + AT_rich Low_complexity Low_complexity 1 21 0 3 753 258 32 0 0 chr3L 22150283 22150314 -2393243 + (GAGTG)n Simple_repeat Simple_repeat 1 31 0 3 754 25 0 0 0 chr3L 22153627 22153652 -2389905 + AT_rich Low_complexity Low_complexity 1 25 0 3 754 201 152 0 0 chr3L 22157534 22157567 -2385990 + (CATA)n Simple_repeat Simple_repeat 3 35 0 3 754 198 71 0 0 chr3L 22159089 22159117 -2384440 + (CATCC)n Simple_repeat Simple_repeat 5 32 0 3 754 203 278 19 0 chr3L 22162894 22162948 -2380609 + (TATG)n Simple_repeat Simple_repeat 2 56 0 3 754 180 0 0 0 chr3L 22164509 22164529 -2379028 + (CAGGC)n Simple_repeat Simple_repeat 4 23 0 3 754 23 54 0 0 chr3L 22170470 22170507 -2373050 + AT_rich Low_complexity Low_complexity 1 37 0 3 754 213 180 0 0 chr3L 22173211 22173261 -2370296 + (TTG)n Simple_repeat Simple_repeat 1 50 0 3 754 204 227 0 0 chr3L 22174233 22174277 -2369280 + CT-rich Low_complexity Low_complexity 1 44 0 3 754 209 286 0 0 chr3L 22174977 22175026 -2368531 + (ATG)n Simple_repeat Simple_repeat 3 51 0 3 754 266 211 0 17 chr3L 22176040 22176098 -2367459 + (CGGA)n Simple_repeat Simple_repeat 3 59 0 3 754 216 167 0 0 chr3L 22176639 22176675 -2366882 + (TGGA)n Simple_repeat Simple_repeat 3 38 0 3 754 21 36 0 0 chr3L 22180190 22180218 -2363339 + AT_rich Low_complexity Low_complexity 1 28 0 3 754 215 216 0 0 chr3L 22180833 22180884 -2362673 + (ATGGTG)n Simple_repeat Simple_repeat 3 53 0 3 754 201 328 0 0 chr3L 22187441 22187499 -2356058 + (CCCGAA)n Simple_repeat Simple_repeat 3 60 0 3 754 223 182 0 0 chr3L 22196237 22196281 -2347276 + (AGTTG)n Simple_repeat Simple_repeat 2 45 0 3 754 189 0 0 0 chr3L 22197832 22197853 -2345704 + (TC)n Simple_repeat Simple_repeat 2 22 0 3 754 192 135 0 0 chr3L 22198325 22198362 -2345195 + (TG)n Simple_repeat Simple_repeat 1 37 0 3 754 31 44 0 0 chr3L 22201689 22201734 -2341823 + AT_rich Low_complexity Low_complexity 1 45 0 3 754 24 53 0 0 chr3L 22203121 22203159 -2340398 + AT_rich Low_complexity Low_complexity 1 38 0 3 754 222 37 0 0 chr3L 22204483 22204510 -2339047 + (TTA)n Simple_repeat Simple_repeat 2 28 0 3 754 224 283 0 0 chr3L 22204688 22204748 -2338809 + (TTG)n Simple_repeat Simple_repeat 2 61 0 3 754 21 36 0 0 chr3L 22204865 22204893 -2338664 + AT_rich Low_complexity Low_complexity 1 28 0 3 754 21 0 0 0 chr3L 22208286 22208307 -2335250 + AT_rich Low_complexity Low_complexity 1 21 0 3 754 191 204 0 18 chr3L 22209522 22209577 -2333980 + (TGAG)n Simple_repeat Simple_repeat 3 56 0 3 754 281 47 23 0 chr3L 22213164 22213207 -2330350 + (CTG)n Simple_repeat Simple_repeat 1 44 0 3 754 211 103 102 17 chr3L 22215135 22215194 -2328363 + (TTAA)n Simple_repeat Simple_repeat 4 67 0 3 754 258 143 0 0 chr3L 22216645 22216694 -2326863 + (CAACC)n Simple_repeat Simple_repeat 4 52 0 3 754 246 32 0 0 chr3L 22218588 22218619 -2324938 + (T)n Simple_repeat Simple_repeat 1 31 0 3 754 218 32 0 31 chr3L 22220141 22220173 -2323384 + (AAATG)n Simple_repeat Simple_repeat 4 34 0 3 754 243 88 0 0 chr3L 22223040 22223074 -2320483 + (GGATG)n Simple_repeat Simple_repeat 4 37 0 3 754 280 64 43 0 chr3L 22224716 22224763 -2318794 + (TA)n Simple_repeat Simple_repeat 2 50 0 3 754 231 114 0 0 chr3L 22225543 22225578 -2317979 + (CGAAT)n Simple_repeat Simple_repeat 5 39 0 3 754 25 0 0 0 chr3L 22230469 22230494 -2313063 + AT_rich Low_complexity Low_complexity 1 25 0 3 754 204 97 0 0 chr3L 22231092 22231123 -2312434 + (CGAAA)n Simple_repeat Simple_repeat 4 34 0 3 754 23 33 0 0 chr3L 22231292 22231322 -2312235 + AT_rich Low_complexity Low_complexity 1 30 0 3 754 220 213 40 13 chr3L 22236187 22236263 -2307294 + A-rich Low_complexity Low_complexity 4 81 0 3 754 236 181 30 60 chr3L 22237468 22237568 -2305989 + (CATATA)n Simple_repeat Simple_repeat 2 98 0 3 754 183 129 0 0 chr3L 22237903 22237934 -2305623 + (CA)n Simple_repeat Simple_repeat 1 31 0 3 754 205 259 0 0 chr3L 22240045 22240103 -2303454 + (CATA)n Simple_repeat Simple_repeat 2 59 0 3 754 230 56 28 0 chr3L 22240835 22240871 -2302686 + (TA)n Simple_repeat Simple_repeat 1 37 0 3 754 21 57 0 0 chr3L 22241691 22241726 -2301831 + AT_rich Low_complexity Low_complexity 1 35 0 3 754 195 42 0 0 chr3L 22245769 22245793 -2297764 + (CCCA)n Simple_repeat Simple_repeat 3 26 0 3 754 195 42 0 0 chr3L 22246654 22246678 -2296879 + (TTTAA)n Simple_repeat Simple_repeat 5 28 0 3 754 27 0 0 0 chr3L 22246696 22246723 -2296834 + AT_rich Low_complexity Low_complexity 1 27 0 3 754 362 21 0 21 chr3L 22246749 22246797 -2296760 + (TA)n Simple_repeat Simple_repeat 2 48 0 3 754 244 259 0 0 chr3L 22247239 22247293 -2296264 + (CGGA)n Simple_repeat Simple_repeat 1 54 0 3 754 22 0 0 0 chr3L 22249327 22249349 -2294208 + AT_rich Low_complexity Low_complexity 1 22 0 3 754 22 103 0 0 chr3L 22250861 22250939 -2292618 + AT_rich Low_complexity Low_complexity 1 78 0 3 754 324 83 0 0 chr3L 22259180 22259228 -2284329 + (TCC)n Simple_repeat Simple_repeat 2 49 0 3 754 284 194 30 0 chr3L 22260001 22260068 -2283489 + HOBO DNA hAT 2278 2346 -670 3 754 54 78 0 19 chr3L 22260068 22260225 -2283332 + AT_rich Low_complexity Low_complexity 1 154 0 3 754 664 176 245 14 chr3L 22260240 22260532 -2283025 + HOBO DNA hAT 2659 3016 0 3 754 47 0 0 0 chr3L 22262622 22262669 -2280888 + AT_rich Low_complexity Low_complexity 1 47 0 3 754 255 133 0 0 chr3L 22262921 22262966 -2280591 + (CTG)n Simple_repeat Simple_repeat 3 47 0 3 754 21 36 0 0 chr3L 22266666 22266694 -2276863 + AT_rich Low_complexity Low_complexity 1 28 0 3 754 21 71 0 0 chr3L 22269043 22269085 -2274472 + AT_rich Low_complexity Low_complexity 1 42 0 3 754 243 236 0 0 chr3L 22273340 22273395 -2270162 + (CCCGAA)n Simple_repeat Simple_repeat 2 56 0 3 754 180 152 0 0 chr3L 22274704 22274737 -2268820 + (CAA)n Simple_repeat Simple_repeat 1 33 0 3 754 401 145 53 0 chr3L 22275092 22275168 -2268389 + DNAREP1_DM LINE Penelope 366 445 -149 3 754 345 150 0 0 chr3L 22275197 22275257 -2268300 + DNAREP1_DM LINE Penelope 520 579 -15 3 754 364 200 89 0 chr3L 22275439 22275529 -2268028 + DNAREP1_DM LINE Penelope 143 240 -354 3 754 317 188 240 0 chr3L 22275526 22275622 -2267935 + DNAREP1_DM LINE Penelope 434 552 -42 3 754 33 25 0 0 chr3L 22281407 22281447 -2262110 + AT_rich Low_complexity Low_complexity 1 40 0 3 755 21 36 0 0 chr3L 22286132 22286160 -2257397 + AT_rich Low_complexity Low_complexity 1 28 0 3 755 24 32 0 0 chr3L 22286178 22286209 -2257348 + AT_rich Low_complexity Low_complexity 1 31 0 3 755 26 0 0 0 chr3L 22286891 22286917 -2256640 + AT_rich Low_complexity Low_complexity 1 26 0 3 755 30 0 0 0 chr3L 22287196 22287226 -2256331 + AT_rich Low_complexity Low_complexity 1 30 0 3 755 22 70 0 0 chr3L 22295654 22295697 -2247860 + AT_rich Low_complexity Low_complexity 1 43 0 3 755 183 42 0 0 chr3L 22299523 22299547 -2244010 + (TCC)n Simple_repeat Simple_repeat 2 25 0 3 755 26 50 0 0 chr3L 22303463 22303503 -2240054 + AT_rich Low_complexity Low_complexity 1 40 0 3 755 21 0 0 0 chr3L 22309769 22309790 -2233767 + AT_rich Low_complexity Low_complexity 1 21 0 3 755 215 156 0 22 chr3L 22310227 22310273 -2233284 + (CAG)n Simple_repeat Simple_repeat 1 45 0 3 755 195 42 0 0 chr3L 22320640 22320664 -2222893 + (CAGT)n Simple_repeat Simple_repeat 3 26 0 3 755 615 125 0 0 chr3L 22324324 22324428 -2219129 + (CAA)n Simple_repeat Simple_repeat 1 104 0 3 755 225 108 0 0 chr3L 22325073 22325110 -2218447 + (CAAAC)n Simple_repeat Simple_repeat 3 39 0 3 755 201 94 0 0 chr3L 22327986 22328018 -2215539 + (TG)n Simple_repeat Simple_repeat 1 32 0 3 755 223 288 0 0 chr3L 22329699 22329758 -2213799 + (CAG)n Simple_repeat Simple_repeat 3 61 0 3 755 186 209 0 0 chr3L 22331387 22331430 -2212127 + (TA)n Simple_repeat Simple_repeat 2 44 0 3 755 240 122 0 0 chr3L 22333042 22333083 -2210474 + (CCGAA)n Simple_repeat Simple_repeat 4 44 0 3 755 210 227 0 0 chr3L 22334477 22334521 -2209036 + (CGTG)n Simple_repeat Simple_repeat 3 46 0 3 755 231 125 0 0 chr3L 22336269 22336309 -2207248 + (GGATG)n Simple_repeat Simple_repeat 1 40 0 3 755 222 37 0 0 chr3L 22340007 22340034 -2203523 + (GA)n Simple_repeat Simple_repeat 1 27 0 3 755 23 0 0 0 chr3L 22341210 22341233 -2202324 + AT_rich Low_complexity Low_complexity 1 23 0 3 755 219 88 0 0 chr3L 22345949 22345983 -2197574 + (CAGT)n Simple_repeat Simple_repeat 4 37 0 3 755 27 0 0 0 chr3L 22346092 22346119 -2197438 + AT_rich Low_complexity Low_complexity 1 27 0 3 755 204 318 16 0 chr3L 22349925 22349988 -2193569 + (TATG)n Simple_repeat Simple_repeat 2 65 0 3 755 216 135 0 0 chr3L 22361869 22361906 -2181651 + (CAT)n Simple_repeat Simple_repeat 3 39 0 3 755 270 116 0 0 chr3L 22363712 22363755 -2179802 + (GGATG)n Simple_repeat Simple_repeat 4 46 0 3 755 23 0 0 0 chr3L 22363789 22363812 -2179745 + AT_rich Low_complexity Low_complexity 1 23 0 3 755 23 33 0 0 chr3L 22364322 22364352 -2179205 + AT_rich Low_complexity Low_complexity 1 30 0 3 755 22 0 0 0 chr3L 22366130 22366152 -2177405 + AT_rich Low_complexity Low_complexity 1 22 0 3 755 21 0 0 0 chr3L 22374222 22374243 -2169314 + AT_rich Low_complexity Low_complexity 1 21 0 3 755 22 0 0 0 chr3L 22377534 22377556 -2166001 + AT_rich Low_complexity Low_complexity 1 22 0 3 755 201 152 0 0 chr3L 22377611 22377644 -2165913 + (TTCCG)n Simple_repeat Simple_repeat 4 36 0 3 755 254 314 0 0 chr3L 22379703 22379773 -2163784 + G-rich Low_complexity Low_complexity 1 70 0 3 755 210 162 0 0 chr3L 22386187 22386224 -2157333 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 3 755 186 103 0 0 chr3L 22387501 22387530 -2156027 + (CGA)n Simple_repeat Simple_repeat 2 30 0 3 755 23 33 0 0 chr3L 22388670 22388700 -2154857 + AT_rich Low_complexity Low_complexity 1 30 0 3 755 22 0 0 0 chr3L 22395220 22395242 -2148315 + AT_rich Low_complexity Low_complexity 1 22 0 3 755 25 0 0 0 chr3L 22395659 22395684 -2147873 + AT_rich Low_complexity Low_complexity 1 25 0 3 755 210 18 102 34 chr3L 22401757 22401816 -2141741 + (TTATA)n Simple_repeat Simple_repeat 5 67 0 3 755 27 49 0 0 chr3L 22412879 22412920 -2130637 + AT_rich Low_complexity Low_complexity 1 41 0 3 756 258 176 0 0 chr3L 22415841 22415892 -2127665 + (AACTG)n Simple_repeat Simple_repeat 1 51 0 3 756 209 182 0 0 chr3L 22417063 22417096 -2126461 + (CGA)n Simple_repeat Simple_repeat 3 35 0 3 756 201 182 0 0 chr3L 22417243 22417298 -2126259 + (CAG)n Simple_repeat Simple_repeat 1 55 0 3 756 24 53 0 0 chr3L 22417534 22417572 -2125985 + AT_rich Low_complexity Low_complexity 1 38 0 3 756 276 271 0 36 chr3L 22418578 22418689 -2124868 + (CCCCAG)n Simple_repeat Simple_repeat 5 111 0 3 756 21 0 0 0 chr3L 22422284 22422305 -2121252 + AT_rich Low_complexity Low_complexity 1 21 0 3 756 192 40 0 0 chr3L 22434765 22434790 -2108767 + (CAGC)n Simple_repeat Simple_repeat 2 26 0 3 756 23 0 0 0 chr3L 22436780 22436803 -2106754 + AT_rich Low_complexity Low_complexity 1 23 0 3 756 25 83 0 0 chr3L 22441508 22441568 -2101989 + AT_rich Low_complexity Low_complexity 1 60 0 3 756 209 211 19 0 chr3L 22441912 22441964 -2101593 + (CAG)n Simple_repeat Simple_repeat 3 55 0 3 756 22 0 0 0 chr3L 22443264 22443286 -2100271 + AT_rich Low_complexity Low_complexity 1 22 0 3 756 22 0 0 0 chr3L 22444256 22444278 -2099279 + AT_rich Low_complexity Low_complexity 1 22 0 3 756 183 80 0 0 chr3L 22446710 22446735 -2096822 + (TGGA)n Simple_repeat Simple_repeat 2 26 0 3 756 25 0 0 0 chr3L 22452100 22452125 -2091432 + AT_rich Low_complexity Low_complexity 1 25 0 3 756 44 46 0 0 chr3L 22454608 22454673 -2088884 + AT_rich Low_complexity Low_complexity 1 65 0 3 756 302 259 78 110 chr3L 22457500 22457691 -2085866 + DNAREP1_DM LINE Penelope 310 494 -100 3 756 36 77 0 0 chr3L 22457972 22458050 -2085507 + AT_rich Low_complexity Low_complexity 1 78 0 3 756 186 171 0 0 chr3L 22459785 22459826 -2083731 + (CAA)n Simple_repeat Simple_repeat 1 41 0 3 756 23 0 0 0 chr3L 22463203 22463226 -2080331 + AT_rich Low_complexity Low_complexity 1 23 0 3 756 23 0 0 0 chr3L 22464871 22464894 -2078663 + AT_rich Low_complexity Low_complexity 1 23 0 3 756 216 0 0 0 chr3L 22464894 22464918 -2078639 + (TA)n Simple_repeat Simple_repeat 1 24 0 3 756 233 135 0 19 chr3L 22470834 22470887 -2072670 + (CAGAC)n Simple_repeat Simple_repeat 5 56 0 3 756 255 114 0 0 chr3L 22472886 22472930 -2070627 + (CAAAC)n Simple_repeat Simple_repeat 2 45 0 3 756 214 241 0 0 chr3L 22481502 22481556 -2062001 + (GGTTG)n Simple_repeat Simple_repeat 3 56 0 3 756 213 262 0 0 chr3L 22482850 22482892 -2060665 + C-rich Low_complexity Low_complexity 6 47 0 3 756 24 0 0 0 chr3L 22483207 22483231 -2060326 + AT_rich Low_complexity Low_complexity 1 24 0 3 756 271 103 0 0 chr3L 22484658 22484697 -2058860 + DNAREP1_DM LINE Penelope 2 40 -554 3 756 261 98 0 0 chr3L 22488002 22488043 -2055514 + (ACTG)n Simple_repeat Simple_repeat 3 43 0 3 756 222 37 0 0 chr3L 22488729 22488756 -2054801 + (TG)n Simple_repeat Simple_repeat 1 27 0 3 756 24 0 0 0 chr3L 22489407 22489431 -2054126 + AT_rich Low_complexity Low_complexity 1 24 0 3 756 22 0 0 0 chr3L 22498397 22498419 -2045138 + AT_rich Low_complexity Low_complexity 1 22 0 3 756 25 65 0 0 chr3L 22498450 22498496 -2045061 + AT_rich Low_complexity Low_complexity 1 46 0 3 756 429 150 50 0 chr3L 22500472 22500552 -2043005 - DNAREP1_DM LINE Penelope 0 594 511 3 756 384 220 27 18 chr3L 22500603 22500714 -2042843 - DNAREP1_DM LINE Penelope -388 206 95 3 756 860 155 138 0 chr3L 22501081 22501262 -2042295 - DNAREP1_DM LINE Penelope -20 574 369 3 756 31 0 0 0 chr3L 22504601 22504632 -2038925 + AT_rich Low_complexity Low_complexity 1 31 0 3 756 24 0 0 0 chr3L 22504718 22504742 -2038815 + AT_rich Low_complexity Low_complexity 1 24 0 3 756 1822 151 34 42 chr3L 22504946 22505401 -2038156 - DNAREP1_DM LINE Penelope -20 574 1 3 756 227 204 0 0 chr3L 22510252 22510301 -2033256 + (TTA)n Simple_repeat Simple_repeat 1 49 0 3 756 307 128 0 0 chr3L 22512165 22512212 -2031345 + DNAREP1_DM LINE Penelope 10 56 -538 3 756 22 35 0 0 chr3L 22513493 22513522 -2030035 + AT_rich Low_complexity Low_complexity 1 29 0 3 756 24 0 0 0 chr3L 22524883 22524907 -2018650 + AT_rich Low_complexity Low_complexity 1 24 0 3 756 358 0 81 0 chr3L 22525108 22525170 -2018387 + (TA)n Simple_repeat Simple_repeat 1 67 0 3 756 5435 31 32 11 chr3L 22525406 22526062 -2017495 - DMCR1A LINE CR1 -228 4242 3573 3 756 4435 45 81 0 chr3L 22526050 22526949 -2016608 - DMCR1A LINE CR1 -2145 2325 1354 3 756 22 80 0 0 chr3L 22526967 22527017 -2016540 + AT_rich Low_complexity Low_complexity 1 50 0 3 756 203 254 0 0 chr3L 22529942 22529997 -2013560 + CT-rich Low_complexity Low_complexity 1 55 0 3 756 195 129 0 0 chr3L 22532201 22532232 -2011325 + (CAT)n Simple_repeat Simple_repeat 1 31 0 3 756 23 0 0 0 chr3L 22533490 22533513 -2010044 + AT_rich Low_complexity Low_complexity 1 23 0 3 756 189 167 0 0 chr3L 22534333 22534387 -2009170 + (TTA)n Simple_repeat Simple_repeat 2 55 0 3 756 26 30 0 0 chr3L 22534479 22534512 -2009045 + AT_rich Low_complexity Low_complexity 1 33 0 3 756 23 54 0 0 chr3L 22538100 22538137 -2005420 + AT_rich Low_complexity Low_complexity 1 37 0 3 756 226 221 125 117 chr3L 22538231 22538359 -2005198 + DNAREP1_DM LINE Penelope 415 543 -51 3 756 1252 127 122 10 chr3L 22541062 22541355 -2002202 + DNAREP1_DM LINE Penelope 1 326 -268 3 756 258 64 0 21 chr3L 22541359 22541407 -2002150 + DNAREP1_DM LINE Penelope 218 264 -330 3 757 280 151 315 0 chr3L 22545570 22545643 -1997914 + DNAREP1_DM LINE Penelope 428 523 -71 3 757 22 0 0 0 chr3L 22545713 22545735 -1997822 + AT_rich Low_complexity Low_complexity 1 22 0 3 757 240 100 0 0 chr3L 22546057 22546097 -1997460 + (CA)n Simple_repeat Simple_repeat 2 41 0 3 757 22 0 0 0 chr3L 22546231 22546253 -1997304 + AT_rich Low_complexity Low_complexity 1 22 0 3 757 3749 2 0 0 chr3L 22548924 22549323 -1994234 + BLOOD_LTR LTR Gypsy 1 399 0 3 757 60226 1 0 0 chr3L 22549323 22555938 -1987619 + BLOOD_I LTR Gypsy 1 6613 0 3 757 3749 2 0 0 chr3L 22555938 22556337 -1987220 + BLOOD_LTR LTR Gypsy 1 399 0 3 757 248 227 25 74 chr3L 22557669 22557750 -1985807 - DNAREP1_DM LINE Penelope -104 490 414 3 757 253 197 0 0 chr3L 22559328 22559389 -1984168 - ROO_I LTR Pao -7520 736 676 3 757 26 50 0 0 chr3L 22564030 22564070 -1979487 + AT_rich Low_complexity Low_complexity 1 40 0 3 757 201 152 0 0 chr3L 22564713 22564746 -1978811 + (CAG)n Simple_repeat Simple_repeat 2 34 0 3 757 21 36 0 0 chr3L 22570171 22570199 -1973358 + AT_rich Low_complexity Low_complexity 1 28 0 3 757 43598 1 0 0 chr3L 22570776 22575495 -1968062 + DOC LINE Jockey 7 4725 0 3 757 27 49 0 0 chr3L 22575799 22575840 -1967717 + AT_rich Low_complexity Low_complexity 1 41 0 3 757 396 97 0 0 chr3L 22576267 22576329 -1967228 + (CTG)n Simple_repeat Simple_repeat 3 64 0 3 757 39 84 0 0 chr3L 22589612 22589707 -1953850 + AT_rich Low_complexity Low_complexity 1 95 0 3 757 24 32 0 0 chr3L 22593489 22593520 -1950037 + AT_rich Low_complexity Low_complexity 1 31 0 3 757 393 200 287 7 chr3L 22593604 22593740 -1949817 + DNAREP1_DM LINE Penelope 401 574 -20 3 757 29 0 0 0 chr3L 22597252 22597281 -1946276 + AT_rich Low_complexity Low_complexity 1 29 0 3 757 341 191 0 0 chr3L 22597364 22597432 -1946125 - DNAREP1_DM LINE Penelope 0 594 527 3 757 27 29 0 0 chr3L 22597786 22597820 -1945737 + AT_rich Low_complexity Low_complexity 1 34 0 3 757 50 51 0 0 chr3L 22597846 22597924 -1945633 + AT_rich Low_complexity Low_complexity 1 78 0 3 757 21 57 0 0 chr3L 22602650 22602685 -1940872 + AT_rich Low_complexity Low_complexity 1 35 0 3 757 355 187 43 32 chr3L 22602789 22602883 -1940674 + DNAREP1_DM LINE Penelope 20 114 -480 3 757 3730 0 0 5 chr3L 22610344 22610745 -1932812 - BLOOD_LTR LTR Gypsy 0 399 1 3 757 59923 1 0 0 chr3L 22610745 22617325 -1926232 - BLOOD_I LTR Gypsy 0 6613 32 3 757 3730 0 0 5 chr3L 22617338 22617739 -1925818 - BLOOD_LTR LTR Gypsy 0 399 1 3 757 21 0 0 0 chr3L 22625868 22625889 -1917668 + AT_rich Low_complexity Low_complexity 1 21 0 3 757 28 48 0 0 chr3L 22627869 22627911 -1915646 + AT_rich Low_complexity Low_complexity 1 42 0 3 757 237 33 0 0 chr3L 22628041 22628071 -1915486 + (T)n Simple_repeat Simple_repeat 1 30 0 3 757 595 106 42 126 chr3L 22632072 22632191 -1911366 + DNAREP1_DM LINE Penelope 1 109 -485 3 757 403 102 0 0 chr3L 22632194 22632253 -1911304 - DNAREP1_DM LINE Penelope 0 594 536 3 757 1702 147 36 22 chr3L 22632250 22632606 -1910951 - DNAREP1_DM LINE Penelope -109 485 3 3 757 22 0 0 0 chr3L 22632606 22632628 -1910929 + AT_rich Low_complexity Low_complexity 1 22 0 3 757 506 159 61 9 chr3L 22633253 22633367 -1910190 + DNAREP1_DM LINE Penelope 42 161 -433 3 757 305 210 24 24 chr3L 22633433 22633516 -1910041 + DNAREP1_DM LINE Penelope 10 92 -502 3 757 1094 139 152 9 chr3L 22633507 22633839 -1909718 - DNAREP1_DM LINE Penelope -258 336 1 3 757 684 180 39 0 chr3L 22633861 22633989 -1909568 + LINEJ1_DM LINE Jockey 3746 3878 -1142 3 757 749 232 50 20 chr3L 22634033 22634231 -1909326 + LINEJ1_DM LINE Jockey 4440 4643 -377 3 757 5247 26 0 0 chr3L 22634344 22634956 -1908601 - G4_DM LINE Jockey -1 3855 3244 3 757 225 0 0 0 chr3L 22659587 22659612 -1883945 + (CAGAA)n Simple_repeat Simple_repeat 1 25 0 3 757 186 103 0 0 chr3L 22660700 22660729 -1882828 + (CAGGA)n Simple_repeat Simple_repeat 4 32 0 3 757 212 288 17 0 chr3L 22672054 22672113 -1871444 + (CCCGAA)n Simple_repeat Simple_repeat 6 65 0 3 758 21 57 0 0 chr3L 22678004 22678039 -1865518 + AT_rich Low_complexity Low_complexity 1 35 0 3 758 21 0 0 0 chr3L 22681764 22681785 -1861772 + AT_rich Low_complexity Low_complexity 1 21 0 3 758 320 283 0 0 chr3L 22685420 22685519 -1858038 + (TGG)n Simple_repeat Simple_repeat 2 100 0 3 758 21 0 0 0 chr3L 22686124 22686145 -1857412 + AT_rich Low_complexity Low_complexity 1 21 0 3 758 590 176 264 0 chr3L 22686184 22686343 -1857214 - DNAREP1_DM LINE Penelope -8 586 386 3 758 310 295 0 0 chr3L 22686697 22686802 -1856755 + (TGG)n Simple_repeat Simple_repeat 2 106 0 3 758 40 21 0 0 chr3L 22687724 22687771 -1855786 + AT_rich Low_complexity Low_complexity 1 47 0 3 758 991 285 207 1 chr3L 22687970 22688446 -1855111 + BS2 LINE Jockey 4097 4560 -161 3 758 1258 144 114 20 chr3L 22688462 22688716 -1854841 + DNAREP1_DM LINE Penelope 117 394 -200 3 758 310 295 0 0 chr3L 22689156 22689261 -1854296 + (CCA)n Simple_repeat Simple_repeat 2 106 0 3 758 590 176 264 0 chr3L 22689615 22689774 -1853783 + DNAREP1_DM LINE Penelope 386 586 -8 3 758 21 0 0 0 chr3L 22689813 22689834 -1853723 + AT_rich Low_complexity Low_complexity 1 21 0 3 758 320 283 0 0 chr3L 22690439 22690538 -1853019 + (CCA)n Simple_repeat Simple_repeat 2 100 0 3 758 1658 122 248 5 chr3L 22691056 22691444 -1852113 + DNAREP1_DM LINE Penelope 94 575 -19 3 758 194 62 31 0 chr3L 22693565 22693597 -1849960 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 3 758 201 74 0 0 chr3L 22694298 22694325 -1849232 + (GGA)n Simple_repeat Simple_repeat 3 29 0 3 758 236 54 0 51 chr3L 22696260 22696299 -1847258 + (CATATA)n Simple_repeat Simple_repeat 5 41 0 3 758 180 0 0 0 chr3L 22696966 22696986 -1846571 + (T)n Simple_repeat Simple_repeat 1 20 0 3 758 189 74 0 0 chr3L 22699489 22699516 -1844041 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 3 758 314 132 94 0 chr3L 22700103 22700156 -1843401 + PROTOP_B DNA P 490 547 -606 3 758 25 31 0 0 chr3L 22700599 22700631 -1842926 + AT_rich Low_complexity Low_complexity 1 32 0 3 758 304 183 0 0 chr3L 22703527 22703587 -1839970 - DNAREP1_DM LINE Penelope 0 594 535 3 758 22 35 0 0 chr3L 22704388 22704417 -1839140 + AT_rich Low_complexity Low_complexity 1 29 0 3 758 24 32 0 0 chr3L 22710546 22710577 -1832980 + AT_rich Low_complexity Low_complexity 1 31 0 3 758 2868 97 157 16 chr3L 22713115 22713618 -1829939 + DNAREP1_DM LINE Penelope 1 574 -20 3 758 3123 27 0 8 chr3L 22713618 22713988 -1829569 - PROTOP DNA P 0 4480 4114 3 758 1817 41 0 14 chr3L 22713977 22714198 -1829359 - PROTOP DNA P -4263 217 1 3 758 298 95 0 0 chr3L 22715345 22715387 -1828170 - PROTOP DNA P -1 4479 4437 3 758 533 162 39 54 chr3L 22715394 22715524 -1828033 - PROTOP DNA P -164 4316 4189 3 758 247 200 221 0 chr3L 22715520 22715615 -1827942 - PROTOP DNA P -2896 1584 1469 3 758 326 176 20 66 chr3L 22715615 22715767 -1827790 - PROTOP DNA P -3790 690 546 3 758 507 186 21 0 chr3L 22715767 22715864 -1827693 - PROTOP DNA P -4292 188 90 3 758 1710 124 4 4 chr3L 22716001 22716258 -1827299 + DNAREP1_DM LINE Penelope 237 493 -101 3 758 2074 101 65 63 chr3L 22716258 22716671 -1826886 + DM297_LTR LTR Gypsy 1 414 0 3 758 653 75 54 36 chr3L 22716671 22716782 -1826775 + DNAREP1_DM LINE Penelope 482 594 0 3 758 47 19 0 0 chr3L 22717217 22717271 -1826286 + AT_rich Low_complexity Low_complexity 1 54 0 3 758 35 41 0 0 chr3L 22721051 22721100 -1822457 + AT_rich Low_complexity Low_complexity 1 49 0 3 758 390 105 415 0 chr3L 22730500 22730594 -1812963 - DNAREP1_DM LINE Penelope -459 135 3 3 758 272 213 0 16 chr3L 22736057 22736119 -1807438 + DNAREP1_DM LINE Penelope 2 62 -532 3 758 280 142 354 16 chr3L 22736129 22736256 -1807301 + DNAREP1_DM LINE Penelope 402 571 -23 3 758 201 258 10 41 chr3L 22736492 22736589 -1806968 + (TTG)n Simple_repeat Simple_repeat 1 94 0 3 758 9204 6 7 5 chr3L 22736670 22737759 -1805798 - FB4_DM DNA Tc1 0 4089 2998 3 758 37 52 0 0 chr3L 22737932 22737990 -1805567 + AT_rich Low_complexity Low_complexity 1 58 0 3 758 298 241 13 0 chr3L 22738013 22738092 -1805465 + DNAREP1_DM LINE Penelope 372 451 -143 3 758 26 50 0 0 chr3L 22738227 22738267 -1805290 + AT_rich Low_complexity Low_complexity 1 40 0 3 758 221 292 11 0 chr3L 22742952 22743041 -1800516 + (CAG)n Simple_repeat Simple_repeat 1 90 0 3 758 24 32 0 0 chr3L 22743763 22743794 -1799763 + AT_rich Low_complexity Low_complexity 1 31 0 3 758 896 197 73 50 chr3L 22743915 22744134 -1799423 - DNAREP1_DM LINE Penelope -1 593 370 3 758 286 136 0 0 chr3L 22744140 22744184 -1799373 - DNAREP1_DM LINE Penelope -550 44 1 3 758 3702 56 42 8 chr3L 22744305 22744830 -1798727 - FB4_DM DNA Tc1 -3546 543 1 3 758 180 77 0 0 chr3L 22746189 22746215 -1797342 + (A)n Simple_repeat Simple_repeat 1 26 0 3 758 30 27 0 0 chr3L 22746908 22746945 -1796612 + AT_rich Low_complexity Low_complexity 1 37 0 3 758 498 202 137 0 chr3L 22747005 22747129 -1796428 + DNAREP1_DM LINE Penelope 449 589 -5 3 758 365 45 0 0 chr3L 22749315 22749359 -1794198 - DNAREP1_DM LINE Penelope -550 44 1 3 758 609 172 16 0 chr3L 22752125 22752247 -1791310 - DNAREP1_DM LINE Penelope -470 124 1 3 758 23 0 0 0 chr3L 22753723 22753746 -1789811 + AT_rich Low_complexity Low_complexity 1 23 0 3 758 1379 144 148 70 chr3L 22753973 22754414 -1789143 + DNAREP1_DM LINE Penelope 1 594 0 3 758 48339 10 6 0 chr3L 22754545 22759914 -1783643 + IVK_DM LINE I 3 5402 0 3 758 284 0 28 0 chr3L 22761268 22761304 -1782253 + (TTA)n Simple_repeat Simple_repeat 3 39 0 3 758 25 31 0 0 chr3L 22766310 22766342 -1777215 + AT_rich Low_complexity Low_complexity 1 32 0 3 758 293 240 163 20 chr3L 22769222 22769320 -1774237 + DNAREP1_DM LINE Penelope 431 542 -52 3 758 387 119 206 87 chr3L 22769386 22769478 -1774079 + DNAREP1_DM LINE Penelope 423 525 -69 3 758 3710 91 59 18 chr3L 22773181 22773738 -1769819 - DNAREP1_DM LINE Penelope -3 591 12 3 758 267 206 15 31 chr3L 22779303 22779368 -1764189 - DNAREP1_DM LINE Penelope -141 453 390 3 758 274 267 44 15 chr3L 22779494 22779631 -1763926 - DNAREP1_DM LINE Penelope -453 141 1 3 758 200 125 0 59 chr3L 22779797 22779848 -1763709 + A-rich Low_complexity Low_complexity 1 48 0 3 758 27 0 0 0 chr3L 22781077 22781104 -1762453 + AT_rich Low_complexity Low_complexity 1 27 0 3 758 480 77 0 0 chr3L 22781214 22781279 -1762278 + (GAGAA)n Simple_repeat Simple_repeat 2 66 0 3 758 183 139 0 0 chr3L 22782775 22782811 -1760746 + (T)n Simple_repeat Simple_repeat 1 36 0 3 758 324 70 0 0 chr3L 22785282 22785325 -1758232 + (ATCTG)n Simple_repeat Simple_repeat 3 45 0 3 758 23 0 0 0 chr3L 22785749 22785772 -1757785 + AT_rich Low_complexity Low_complexity 1 23 0 3 758 23 54 0 0 chr3L 22789086 22789123 -1754434 + AT_rich Low_complexity Low_complexity 1 37 0 3 758 462 101 0 0 chr3L 22791392 22791461 -1752096 + (CTG)n Simple_repeat Simple_repeat 1 69 0 3 758 32 0 0 0 chr3L 22791710 22791742 -1751815 + AT_rich Low_complexity Low_complexity 1 32 0 3 758 222 37 0 0 chr3L 22794159 22794186 -1749371 + (CTG)n Simple_repeat Simple_repeat 1 27 0 3 758 29 28 0 0 chr3L 22795802 22795838 -1747719 + AT_rich Low_complexity Low_complexity 1 36 0 3 758 408 88 0 0 chr3L 22796808 22796865 -1746692 + (TA)n Simple_repeat Simple_repeat 1 57 0 3 758 4480 4 0 0 chr3L 22796867 22797385 -1746172 + NOMAD_LTR LTR Gypsy 1 518 0 3 758 57355 1 1 1 chr3L 22797385 22803956 -1739601 + NOMAD_I LTR Gypsy 1 6572 0 3 758 4480 4 0 0 chr3L 22803956 22804474 -1739083 + NOMAD_LTR LTR Gypsy 1 518 0 3 758 1254 95 0 0 chr3L 22804477 22805017 -1738540 + (TA)n Simple_repeat Simple_repeat 1 540 0 3 758 566 276 45 26 chr3L 22805017 22805330 -1738227 + QUASIMODO_I LTR Gypsy 4142 4460 -1600 3 758 231 103 0 0 chr3L 22805331 22805370 -1738187 + (TA)n Simple_repeat Simple_repeat 1 39 0 3 758 5595 1 6 0 chr3L 22805370 22806023 -1737534 + QUASIMODO_LTR LTR Gypsy 2 658 0 3 94 50573 3 0 0 chr3L 22806023 22812083 -1731474 + QUASIMODO_I LTR Gypsy 1 6060 0 3 759 5602 1 6 0 chr3L 22812083 22812737 -1730820 + QUASIMODO_LTR LTR Gypsy 1 658 0 3 759 29 0 0 0 chr3L 22812737 22812766 -1730791 + AT_rich Low_complexity Low_complexity 1 29 0 3 759 1334 138 69 93 chr3L 22812797 22813172 -1730385 - DNAREP1_DM LINE Penelope -228 366 1 3 759 231 276 0 0 chr3L 22822298 22822356 -1721201 + (CCCCAA)n Simple_repeat Simple_repeat 5 62 0 3 759 22 0 0 0 chr3L 22823301 22823323 -1720234 + GC_rich Low_complexity Low_complexity 1 22 0 3 759 22 0 0 0 chr3L 22824314 22824336 -1719221 + AT_rich Low_complexity Low_complexity 1 22 0 3 759 222 37 0 0 chr3L 22824414 22824441 -1719116 + (CATA)n Simple_repeat Simple_repeat 2 28 0 3 759 242 271 0 56 chr3L 22825857 22825982 -1717575 + T-rich Low_complexity Low_complexity 5 122 0 3 759 272 238 39 55 chr3L 22826111 22826293 -1717264 + (TTTG)n Simple_repeat Simple_repeat 2 180 0 3 759 330 162 0 0 chr3L 22826401 22826475 -1717082 + (TTG)n Simple_repeat Simple_repeat 3 76 0 3 759 204 204 18 18 chr3L 22834002 22834057 -1709500 + (CAA)n Simple_repeat Simple_repeat 1 55 0 3 759 213 224 0 0 chr3L 22834245 22834294 -1709263 + (CA)n Simple_repeat Simple_repeat 2 50 0 3 759 25 51 0 0 chr3L 22835416 22835455 -1708102 + AT_rich Low_complexity Low_complexity 1 39 0 3 759 2720 75 125 32 chr3L 22837833 22838318 -1705239 - DNAREP1_DM LINE Penelope -1 593 1 3 759 211 172 69 0 chr3L 22838734 22838792 -1704765 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 3 759 545 148 28 0 chr3L 22838903 22839045 -1704512 + (TA)n Simple_repeat Simple_repeat 2 147 0 3 759 203 200 0 0 chr3L 22839512 22839547 -1704010 + (TA)n Simple_repeat Simple_repeat 1 35 0 3 759 246 95 0 0 chr3L 22840708 22840750 -1702807 + (TTA)n Simple_repeat Simple_repeat 2 43 0 3 759 23 0 0 0 chr3L 22841651 22841674 -1701883 + AT_rich Low_complexity Low_complexity 1 23 0 3 759 269 81 0 0 chr3L 22841713 22841750 -1701807 - DNAREP1_DM LINE Penelope -557 37 1 3 759 26 36 0 51 chr3L 22841847 22841906 -1701651 + AT_rich Low_complexity Low_complexity 1 56 0 3 759 548 196 170 16 chr3L 22842768 22842950 -1700607 - DNAREP1_DM LINE Penelope -259 335 126 3 759 341 115 356 96 chr3L 22843570 22843685 -1699872 - DNAREP1_DM LINE Penelope -245 349 205 3 759 37 0 0 0 chr3L 22847229 22847266 -1696291 + AT_rich Low_complexity Low_complexity 1 37 0 3 759 1256 89 185 14 chr3L 22847292 22847508 -1696049 + DNAREP1_DM LINE Penelope 1 253 -341 3 759 22 0 0 0 chr3L 22847647 22847669 -1695888 + AT_rich Low_complexity Low_complexity 1 22 0 3 759 279 122 0 0 chr3L 22847815 22847864 -1695693 + (TTA)n Simple_repeat Simple_repeat 1 49 0 3 759 294 140 0 0 chr3L 22850659 22850709 -1692848 - DNAREP1_DM LINE Penelope -21 573 524 3 759 351 191 0 0 chr3L 22854490 22854553 -1689004 - DNAREP1_DM LINE Penelope -148 446 384 3 759 22 56 0 0 chr3L 22856603 22856639 -1686918 + AT_rich Low_complexity Low_complexity 1 36 0 3 759 21 57 0 0 chr3L 22858195 22858230 -1685327 + AT_rich Low_complexity Low_complexity 1 35 0 3 759 9787 1 0 5 chr3L 22859138 22860212 -1683345 - DOC LINE Jockey 0 4725 3657 3 759 21 0 0 0 chr3L 22861480 22861501 -1682056 + AT_rich Low_complexity Low_complexity 1 21 0 3 759 33 43 0 0 chr3L 22861667 22861714 -1681843 + AT_rich Low_complexity Low_complexity 1 47 0 3 759 208 219 0 0 chr3L 22861979 22862020 -1681537 + (CTG)n Simple_repeat Simple_repeat 2 42 0 3 759 568 149 215 7 chr3L 22868021 22868170 -1675387 + DNAREP1_DM LINE Penelope 415 594 0 3 759 21 0 0 0 chr3L 22871519 22871540 -1672017 + AT_rich Low_complexity Low_complexity 1 21 0 3 759 23 33 0 0 chr3L 22872260 22872290 -1671267 + AT_rich Low_complexity Low_complexity 1 30 0 3 759 226 91 111 22 chr3L 22875428 22875473 -1668084 + Gypsy11_LTR LTR Gypsy 6 54 -398 3 759 407 142 211 9 chr3L 22876501 22876615 -1666942 - DNAREP1_DM LINE Penelope -23 571 435 3 759 24 0 0 0 chr3L 22876729 22876753 -1666804 + AT_rich Low_complexity Low_complexity 1 24 0 3 759 204 45 43 43 chr3L 22876868 22876915 -1666642 + (TTTAA)n Simple_repeat Simple_repeat 5 51 0 3 759 30 27 0 0 chr3L 22877397 22877434 -1666123 + AT_rich Low_complexity Low_complexity 1 37 0 3 759 23 0 0 0 chr3L 22877494 22877517 -1666040 + AT_rich Low_complexity Low_complexity 1 23 0 3 759 781 129 7 103 chr3L 22877692 22877847 -1665710 - DNAREP1_DM LINE Penelope -91 503 364 3 759 1762 98 72 0 chr3L 22877856 22878120 -1665437 + DNAREP1_DM LINE Penelope 310 592 -2 3 759 1406 84 61 66 chr3L 22883688 22883916 -1659641 - DNAREP1_DM LINE Penelope 0 594 368 3 759 624 14 0 0 chr3L 22887375 22887448 -1656109 + (CA)n Simple_repeat Simple_repeat 2 74 0 3 759 22 0 0 0 chr3L 22888622 22888644 -1654913 + AT_rich Low_complexity Low_complexity 1 22 0 3 759 212 190 0 23 chr3L 22890231 22890274 -1653283 + (CATA)n Simple_repeat Simple_repeat 2 43 0 3 759 33 66 0 0 chr3L 22894347 22894408 -1649149 + AT_rich Low_complexity Low_complexity 1 61 0 3 759 1384 137 113 93 chr3L 22898591 22898967 -1644590 - DNAREP1_DM LINE Penelope -4 590 73 3 759 398 111 16 0 chr3L 22899073 22899136 -1644421 - DMCR1A LINE CR1 -1406 3064 3001 3 759 1841 121 117 12 chr3L 22899145 22899480 -1644077 - DMCR1A LINE CR1 -1781 2689 2320 3 759 237 157 157 0 chr3L 22900306 22900357 -1643200 - DNAREP1_DM LINE Penelope -1 593 535 3 759 23 0 0 0 chr3L 22900471 22900494 -1643063 + AT_rich Low_complexity Low_complexity 1 23 0 3 759 302 284 86 29 chr3L 22900772 22900982 -1642575 + I_DM LINE I 4585 4806 -1425 3 759 22 0 0 0 chr3L 22901021 22901043 -1642514 + AT_rich Low_complexity Low_complexity 1 22 0 3 759 186 43 0 0 chr3L 22901165 22901188 -1642369 + (GAGAA)n Simple_repeat Simple_repeat 2 24 0 3 759 847 76 112 53 chr3L 22901434 22901586 -1641971 + DNAREP1_DM LINE Penelope 92 252 -342 3 759 259 173 58 0 chr3L 22901585 22901637 -1641920 + DNAREP1_DM LINE Penelope 153 207 -387 3 759 814 41 0 0 chr3L 22901648 22901745 -1641812 + DNAREP1_DM LINE Penelope 498 594 0 3 759 343 149 0 75 chr3L 22901743 22901823 -1641734 - Transib-N1_DM DNA Transib -440 74 1 3 759 417 216 60 0 chr3L 22901745 22901760 -1641797 - P_DG DNA P -27 2857 2739 3 759 33 43 0 0 chr3L 22903153 22903200 -1640357 + AT_rich Low_complexity Low_complexity 1 47 0 3 759 681 116 88 18 chr3L 22905436 22905550 -1638007 - DNAREP1_DM LINE Penelope -22 572 451 3 759 614 199 253 5 chr3L 22905566 22905784 -1637773 - DNAREP1_DM LINE Penelope -309 285 14 3 759 319 256 0 13 chr3L 22906398 22906477 -1637080 + (CAG)n Simple_repeat Simple_repeat 1 78 0 3 759 23 0 0 0 chr3L 22907801 22907824 -1635733 + AT_rich Low_complexity Low_complexity 1 23 0 3 759 1441 160 109 51 chr3L 22908901 22909406 -1634151 - DNAREP1_DM LINE Penelope 0 594 1 3 759 226 71 0 0 chr3L 22913870 22913898 -1629659 - DNAREP1_DM LINE Penelope 0 594 567 3 759 27 62 0 0 chr3L 22918658 22918706 -1624851 + AT_rich Low_complexity Low_complexity 1 48 0 3 759 1072 103 65 5 chr3L 22925673 22925859 -1617698 + DNAREP1_DM LINE Penelope 126 322 -272 3 759 1352 202 86 49 chr3L 22925887 22926445 -1617112 + DNAREP1_DM LINE Penelope 90 594 0 3 759 1173 81 3 0 chr3L 22926445 22926730 -1616827 + (TAA)n Simple_repeat Simple_repeat 1 285 0 3 759 21 89 0 0 chr3L 22931094 22931150 -1612407 + AT_rich Low_complexity Low_complexity 1 56 0 3 759 1024 101 7 0 chr3L 22931501 22931650 -1611907 + DNAREP1_DM LINE Penelope 5 154 -440 3 759 1587 158 25 50 chr3L 22931699 22932031 -1611526 + DNAREP1_DM LINE Penelope 149 445 -149 3 759 6652 78 23 10 chr3L 22932022 22932936 -1610621 - DMCR1A LINE CR1 -20 4450 3525 3 759 359 214 162 10 chr3L 22933173 22933272 -1610285 - DNAREP1_DM LINE Penelope -480 114 1 3 759 225 197 132 0 chr3L 22933747 22933823 -1609734 - DNAREP1_DM LINE Penelope -327 267 182 3 759 647 155 83 51 chr3L 22935124 22935280 -1608277 + DNAREP1_DM LINE Penelope 2 162 -432 3 759 307 191 31 31 chr3L 22935281 22935346 -1608211 + DNAREP1_DM LINE Penelope 373 437 -157 3 759 1641 101 48 41 chr3L 22935858 22936126 -1607431 - DNAREP1_DM LINE Penelope -15 579 310 3 759 344 123 0 88 chr3L 22936126 22936206 -1607351 - MDG1_I LTR Gypsy -2784 3812 3740 3 94 1526 149 155 127 chr3L 22937105 22937634 -1605923 - DNAREP1_DM LINE Penelope 0 594 83 3 760 637 156 40 16 chr3L 22937629 22937753 -1605804 - DNAREP1_DM LINE Penelope -466 128 2 3 760 337 91 36 18 chr3L 22937762 22937818 -1605739 + DNAREP1_DM LINE Penelope 1 57 -537 3 760 294 275 12 12 chr3L 22938226 22938307 -1605250 + (TATG)n Simple_repeat Simple_repeat 1 81 0 3 760 231 209 0 0 chr3L 22939063 22939106 -1604451 + (CATA)n Simple_repeat Simple_repeat 4 46 0 3 760 201 39 0 0 chr3L 22941184 22941210 -1602347 + (TG)n Simple_repeat Simple_repeat 2 27 0 3 760 23 0 0 0 chr3L 22941329 22941352 -1602205 + AT_rich Low_complexity Low_complexity 1 23 0 3 760 26 30 0 0 chr3L 22942342 22942375 -1601182 + AT_rich Low_complexity Low_complexity 1 33 0 3 760 36 23 0 0 chr3L 22943221 22943264 -1600293 + AT_rich Low_complexity Low_complexity 1 43 0 3 760 243 88 0 0 chr3L 22943680 22943714 -1599843 + (CAA)n Simple_repeat Simple_repeat 2 35 0 3 760 1583 195 109 31 chr3L 22946908 22947403 -1596154 - DNAREP1_DM LINE Penelope 0 594 125 3 760 23 0 0 0 chr3L 22948582 22948605 -1594952 + AT_rich Low_complexity Low_complexity 1 23 0 3 760 1790 132 173 17 chr3L 22948784 22949251 -1594306 + DNAREP1_DM LINE Penelope 1 592 -2 3 760 24 32 0 0 chr3L 22949265 22949296 -1594261 + AT_rich Low_complexity Low_complexity 1 31 0 3 760 27 29 0 0 chr3L 22949508 22949542 -1594015 + AT_rich Low_complexity Low_complexity 1 34 0 3 760 218 109 21 42 chr3L 22949562 22949610 -1593947 + (TATAA)n Simple_repeat Simple_repeat 3 49 0 3 760 1077 174 167 28 chr3L 22950700 22951109 -1592448 + DNAREP1_DM LINE Penelope 20 375 -219 3 760 30 45 0 0 chr3L 22952785 22952829 -1590728 + AT_rich Low_complexity Low_complexity 1 44 0 3 760 538 157 29 0 chr3L 22956054 22956156 -1587401 + DNAREP1_DM LINE Penelope 169 273 -321 3 760 1146 69 63 0 chr3L 22956163 22956322 -1587235 + DNAREP1_DM LINE Penelope 417 585 -9 3 760 1180 151 296 91 chr3L 22958881 22959374 -1584183 - DNAREP1_DM LINE Penelope 0 594 1 3 760 21 0 0 0 chr3L 22961009 22961030 -1582527 + AT_rich Low_complexity Low_complexity 1 21 0 3 760 230 132 0 0 chr3L 22961034 22961072 -1582485 - DNAREP1_DM LINE Penelope 0 594 557 3 760 1386 63 11 5 chr3L 22961074 22961265 -1582292 - DNAREP1_DM LINE Penelope -402 192 1 3 760 1390 119 64 0 chr3L 22961834 22962052 -1581505 + DNAREP1_DM LINE Penelope 363 594 0 3 760 244 125 0 20 chr3L 22962153 22962202 -1581355 - DNAREP1_DM LINE Penelope -345 249 202 3 760 53 17 0 0 chr3L 22963834 22963894 -1579663 + AT_rich Low_complexity Low_complexity 1 60 0 3 760 21 0 0 0 chr3L 22963927 22963948 -1579609 + AT_rich Low_complexity Low_complexity 1 21 0 3 760 521 177 52 26 chr3L 22964467 22964583 -1578974 - DNAREP1_DM LINE Penelope 0 594 476 3 760 22 0 0 0 chr3L 22965116 22965138 -1578419 + AT_rich Low_complexity Low_complexity 1 22 0 3 760 277 218 71 18 chr3L 22965286 22965398 -1578159 - DNAREP1_DM LINE Penelope -454 140 23 3 760 43 20 0 0 chr3L 22965508 22965558 -1577999 + AT_rich Low_complexity Low_complexity 1 50 0 3 760 598 121 0 0 chr3L 22965615 22965706 -1577851 + DNAREP1_DM LINE Penelope 503 593 -1 3 760 301 178 0 61 chr3L 22965766 22965832 -1577725 - DNAREP1_DM LINE Penelope -532 62 1 3 760 269 175 34 34 chr3L 22965858 22965917 -1577640 - DNAREP1_DM LINE Penelope -512 82 24 3 760 482 162 287 0 chr3L 22966533 22966669 -1576888 - DNAREP1_DM LINE Penelope -419 175 1 3 760 313 257 40 34 chr3L 22966702 22966851 -1576706 + P_DG DNA P 2739 2888 0 3 760 782 115 154 37 chr3L 22966719 22966881 -1576676 - DNAREP1_DM LINE Penelope 0 594 414 3 760 338 162 58 152 chr3L 22966871 22967009 -1576548 + DNAREP1_DM LINE Penelope 22 146 -448 3 760 1009 186 5 5 chr3L 22967002 22967197 -1576360 + DNAREP1_DM LINE Penelope 293 487 -107 3 760 871 126 59 7 chr3L 22969229 22969381 -1574176 + DNAREP1_DM LINE Penelope 189 348 -246 3 760 31 0 0 0 chr3L 22969710 22969741 -1573816 + AT_rich Low_complexity Low_complexity 1 31 0 3 760 1938 102 53 0 chr3L 22969741 22970044 -1573513 - BS2 LINE Jockey 0 4721 4403 3 760 1347 33 139 0 chr3L 22970047 22970227 -1573330 + G5_DM LINE Jockey 503 707 -4149 3 760 1228 192 66 34 chr3L 22970278 22970664 -1572893 - DNAREP1_DM LINE Penelope -179 415 129 3 760 35 0 0 0 chr3L 22971033 22971068 -1572489 + AT_rich Low_complexity Low_complexity 1 35 0 3 760 282 135 0 37 chr3L 22973822 22973876 -1569681 + DNAREP1_DM LINE Penelope 1 52 -542 3 760 255 125 231 15 chr3L 22973857 22973922 -1569635 + DNAREP1_DM LINE Penelope 513 591 -3 3 760 2081 155 29 63 chr3L 22973923 22974399 -1569158 - DM297_I LTR Gypsy -1740 4427 3968 3 760 378 187 0 0 chr3L 22974397 22974472 -1569085 - DM297_I LTR Gypsy -2401 3766 3692 3 760 624 168 22 162 chr3L 22974493 22974678 -1568879 - DM297_I LTR Gypsy -2705 3462 3304 3 760 445 148 0 12 chr3L 22974676 22974758 -1568799 - DM297_I LTR Gypsy -5249 918 838 3 760 343 172 0 0 chr3L 22974749 22974813 -1568744 - DM297_I LTR Gypsy -5460 707 644 3 760 2175 97 96 8 chr3L 22975606 22975960 -1567597 + DNAREP1_DM LINE Penelope 210 594 0 3 760 314 220 174 0 chr3L 22975842 22975974 -1567583 - P_DG DNA P -4 2884 2730 3 760 308 160 0 0 chr3L 22976178 22976228 -1567329 - DNAREP1_DM LINE Penelope -151 443 394 3 760 1366 113 210 0 chr3L 22976275 22976523 -1567034 - DNAREP1_DM LINE Penelope -8 586 287 3 760 183 42 0 0 chr3L 22976525 22976549 -1567008 + (TTTAA)n Simple_repeat Simple_repeat 4 27 0 3 760 768 123 0 0 chr3L 22976551 22976665 -1566892 - DNAREP1_DM LINE Penelope -480 114 1 3 760 706 199 128 5 chr3L 22977293 22977480 -1566077 + DNAREP1_DM LINE Penelope 382 591 -3 3 760 375 211 168 109 chr3L 22978076 22978278 -1565279 + DMRP1 Unknown Unknown 125 338 -8 3 760 50 0 0 0 chr3L 22979296 22979346 -1564211 + AT_rich Low_complexity Low_complexity 1 50 0 3 760 475 138 181 0 chr3L 22979421 22979515 -1564042 - DNAREP1_DM LINE Penelope -105 489 379 3 760 1312 85 0 19 chr3L 22979528 22979743 -1563814 - S_DM DNA Tc1 0 1736 1526 3 760 180 0 0 0 chr3L 22979745 22979765 -1563792 + (TA)n Simple_repeat Simple_repeat 2 21 0 3 760 426 193 500 5 chr3L 22979787 22979978 -1563579 - DNAREP1_DM LINE Penelope -301 293 8 3 760 22 0 0 0 chr3L 22981472 22981494 -1562063 + AT_rich Low_complexity Low_complexity 1 22 0 3 760 369 231 0 0 chr3L 22981520 22981598 -1561959 + Jockey2 LINE Jockey 2874 2951 -477 3 760 276 206 287 14 chr3L 22981629 22981772 -1561785 + LINEJ1_DM LINE Jockey 4616 4797 -223 3 760 3523 5 7 7 chr3L 22983016 22983430 -1560127 + DM297_LTR LTR Gypsy 1 414 0 3 760 41260 55 9 4 chr3L 22983430 22989521 -1554036 + DM297_I LTR Gypsy 1 6420 0 3 760 3523 5 7 7 chr3L 22989519 22989933 -1553624 + DM297_LTR LTR Gypsy 1 414 0 3 760 822 98 187 18 chr3L 22990709 22990993 -1552564 - DNAREP1_DM LINE Penelope -262 332 1 3 760 208 139 0 0 chr3L 22991765 22991801 -1551756 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 3 760 225 365 7 28 chr3L 22992042 22992183 -1551374 + (CATATA)n Simple_repeat Simple_repeat 3 140 0 3 760 23 78 0 0 chr3L 22992522 22992573 -1550984 + AT_rich Low_complexity Low_complexity 1 51 0 3 760 1718 192 114 58 chr3L 22992802 22993337 -1550220 - DNAREP1_DM LINE Penelope 0 594 30 3 760 493 169 78 173 chr3L 22993629 22993808 -1549749 + DNAREP1_DM LINE Penelope 392 553 -41 3 760 226 283 17 0 chr3L 22993833 22993893 -1549664 + DNAREP1_DM LINE Penelope 12 72 -522 3 760 1023 23 84 8 chr3L 22994038 22994169 -1549388 + FB4_DM DNA Tc1 1 141 -3948 3 760 2167 103 292 17 chr3L 22994234 22994787 -1548770 + FB4_DM DNA Tc1 3424 4089 0 3 760 394 225 0 29 chr3L 22994890 22994995 -1548562 + DNAREP1_DM LINE Penelope 339 440 -154 3 760 1585 182 88 61 chr3L 22995592 22996048 -1547509 + DNAREP1_DM LINE Penelope 127 594 0 3 760 347 245 29 48 chr3L 22996769 22996872 -1546685 - DNAREP1_DM LINE Penelope -490 104 4 3 760 563 89 429 13 chr3L 22997255 22997416 -1546141 - DNAREP1_DM LINE Penelope -366 228 1 3 760 661 165 151 12 chr3L 22997414 22997580 -1545977 + DNAREP1_DM LINE Penelope 167 355 -239 3 760 444 152 353 11 chr3L 22997579 22997712 -1545845 + DNAREP1_DM LINE Penelope 431 593 -1 3 760 901 106 0 7 chr3L 22997790 22997932 -1545625 - DNAREP1_DM LINE Penelope -453 141 1 3 760 422 324 36 36 chr3L 22998739 22999040 -1544517 - Gypsy12_I LTR Gypsy -162 5384 5084 3 760 624 332 31 37 chr3L 22999070 22999381 -1544176 - Gypsy12_I LTR Gypsy -1440 4106 3798 3 760 1236 125 244 9 chr3L 22999381 22999698 -1543859 - DNAREP1_DM LINE Penelope 0 594 204 3 760 1313 149 38 19 chr3L 22999686 22999952 -1543605 - DNAREP1_DM LINE Penelope -320 274 4 3 760 36 62 0 0 chr3L 23000138 23000202 -1543355 + AT_rich Low_complexity Low_complexity 1 64 0 3 760 1668 136 75 13 chr3L 23001668 23001974 -1541583 - DNAREP1_DM LINE Penelope 0 594 270 3 760 278 59 0 0 chr3L 23001983 23002017 -1541540 - DNAREP1_DM LINE Penelope -560 34 1 3 760 26 0 0 0 chr3L 23003540 23003566 -1539991 + AT_rich Low_complexity Low_complexity 1 26 0 3 760 28 29 0 0 chr3L 23003595 23003630 -1539927 + AT_rich Low_complexity Low_complexity 1 35 0 3 760 22 56 0 0 chr3L 23003714 23003750 -1539807 + AT_rich Low_complexity Low_complexity 1 36 0 3 760 281 204 0 0 chr3L 23005559 23005613 -1537944 - DNAREP1_DM LINE Penelope -137 457 404 3 760 22 56 0 0 chr3L 23006826 23006862 -1536695 + AT_rich Low_complexity Low_complexity 1 36 0 3 760 22 35 0 0 chr3L 23007421 23007450 -1536107 + AT_rich Low_complexity Low_complexity 1 29 0 3 760 39 0 0 0 chr3L 23009724 23009763 -1533794 + AT_rich Low_complexity Low_complexity 1 39 0 3 760 1970 126 15 6 chr3L 23009784 23010112 -1533445 - DMCR1A LINE CR1 -224 4246 3916 3 760 443 158 386 0 chr3L 23010111 23010282 -1533275 - DNAREP1_DM LINE Penelope -292 302 66 3 760 1129 163 104 16 chr3L 23010285 23010535 -1533022 - DMCR1A LINE CR1 -2091 2379 2108 3 760 2015 151 188 25 chr3L 23010535 23011131 -1532426 - DMCR1A LINE CR1 -3284 1186 431 3 760 1088 162 296 3 chr3L 23011141 23011469 -1532088 - DNAREP1_DM LINE Penelope -34 560 137 3 760 306 243 14 0 chr3L 23014118 23014192 -1529365 - DNAREP1_DM LINE Penelope -103 491 417 3 760 472 189 56 9 chr3L 23014572 23014679 -1528878 - DNAREP1_DM LINE Penelope -481 113 2 3 760 24 32 0 0 chr3L 23015028 23015059 -1528498 + AT_rich Low_complexity Low_complexity 1 31 0 3 760 33 0 0 0 chr3L 23015157 23015190 -1528367 + AT_rich Low_complexity Low_complexity 1 33 0 3 760 490 216 16 82 chr3L 23015466 23015647 -1527910 - DNAREP1_DM LINE Penelope -337 257 89 3 760 2626 118 33 17 chr3L 23015647 23016345 -1527212 + DNAREP1_DM LINE Penelope 3 594 0 3 760 625 102 0 0 chr3L 23016343 23016431 -1527126 - DNAREP1_DM LINE Penelope -505 89 2 3 760 390 163 168 58 chr3L 23016607 23016744 -1526813 - DNAREP1_DM LINE Penelope -342 252 101 3 760 672 133 104 0 chr3L 23016759 23016894 -1526663 - DNAREP1_DM LINE Penelope -445 149 1 3 760 23 54 0 0 chr3L 23017980 23018017 -1525540 + AT_rich Low_complexity Low_complexity 1 37 0 3 760 21 57 0 0 chr3L 23018224 23018259 -1525298 + AT_rich Low_complexity Low_complexity 1 35 0 3 760 231 226 0 0 chr3L 23019328 23019381 -1524176 + T-rich Low_complexity Low_complexity 1 53 0 3 760 339 274 68 31 chr3L 23020051 23020213 -1523344 - BLASTOPIA_I LTR Gypsy -709 3772 3605 3 760 34 0 0 0 chr3L 23020691 23020725 -1522832 + AT_rich Low_complexity Low_complexity 1 34 0 3 760 257 137 98 0 chr3L 23020756 23020807 -1522750 + DNAREP1_DM LINE Penelope 260 315 -279 3 760 3534 146 178 18 chr3L 23020889 23021868 -1521689 + DMCR1A LINE CR1 645 1842 -2628 3 760 435 160 0 0 chr3L 23021883 23021956 -1521601 + DMCR1A LINE CR1 2163 2235 -2235 3 760 369 61 0 0 chr3L 23021956 23022005 -1521552 - DNAREP1_DM LINE Penelope 0 594 546 3 760 1182 89 0 0 chr3L 23022001 23022170 -1521387 - DNAREP1_DM LINE Penelope -423 171 3 3 760 728 70 102 25 chr3L 23022172 23022290 -1521267 + DMCR1A LINE CR1 2331 2457 -2013 3 760 22 35 0 0 chr3L 23022534 23022563 -1520994 + AT_rich Low_complexity Low_complexity 1 29 0 3 760 29 0 0 0 chr3L 23022814 23022843 -1520714 + AT_rich Low_complexity Low_complexity 1 29 0 3 760 21 71 0 0 chr3L 23023511 23023553 -1520004 + AT_rich Low_complexity Low_complexity 1 42 0 3 760 319 216 66 38 chr3L 23025397 23025503 -1518054 - G_DM LINE Jockey -321 4025 3917 3 760 532 250 160 10 chr3L 23025502 23025748 -1517809 - G_DM LINE Jockey -467 3879 3660 3 760 390 133 16 19 chr3L 23025755 23025827 -1517730 - G_DM LINE Jockey -1208 3138 3076 3 760 24 32 0 0 chr3L 23027588 23027619 -1515938 + AT_rich Low_complexity Low_complexity 1 31 0 3 760 292 264 11 11 chr3L 23027735 23027823 -1515734 - DNAREP1_DM LINE Penelope -2 592 505 3 760 214 73 23 47 chr3L 23027899 23027942 -1515615 + (TTTTG)n Simple_repeat Simple_repeat 4 45 0 3 760 1572 94 77 0 chr3L 23028436 23028671 -1514886 + DNAREP1_DM LINE Penelope 342 594 0 3 760 1557 115 288 66 chr3L 23029136 23029528 -1514029 - DNAREP1_DM LINE Penelope -1 593 115 3 760 1098 88 92 23 chr3L 23029524 23029698 -1513859 + DNAREP1_DM LINE Penelope 409 594 0 3 760 30 59 0 0 chr3L 23029938 23029989 -1513568 + AT_rich Low_complexity Low_complexity 1 51 0 3 760 23 78 0 0 chr3L 23030854 23030905 -1512652 + AT_rich Low_complexity Low_complexity 1 51 0 3 760 38 0 0 0 chr3L 23031453 23031491 -1512066 + AT_rich Low_complexity Low_complexity 1 38 0 3 760 3193 53 6 64 chr3L 23032321 23032788 -1510769 + G5A_DM LINE Jockey 2400 2839 -2 3 760 292 306 55 45 chr3L 23033357 23033581 -1509976 + G4_DM LINE Jockey 2028 2239 -1617 3 760 920 172 162 8 chr3L 23033668 23033902 -1509655 + DNAREP1_DM LINE Penelope 141 410 -184 3 760 505 129 59 10 chr3L 23034079 23034181 -1509376 + DNAREP1_DM LINE Penelope 219 325 -269 3 760 359 81 160 140 chr3L 23034210 23034310 -1509247 + DNAREP1_DM LINE Penelope 426 527 -67 3 760 32 0 0 0 chr3L 23034315 23034347 -1509210 + AT_rich Low_complexity Low_complexity 1 32 0 3 760 262 321 130 22 chr3L 23034565 23034934 -1508623 - MDG3_I LTR Gypsy -2401 2585 2177 3 760 1828 108 16 60 chr3L 23035380 23035696 -1507861 + Gypsy6A_LTR LTR Gypsy 1 302 -118 3 760 36 23 0 0 chr3L 23035923 23035966 -1507591 + AT_rich Low_complexity Low_complexity 1 43 0 3 760 16941 266 11 9 chr3L 23036274 23040597 -1502960 + Gypsy6_I LTR Gypsy 987 5318 -1694 3 760 22 0 0 0 chr3L 23040606 23040628 -1502929 + AT_rich Low_complexity Low_complexity 1 22 0 3 760 3580 292 7 7 chr3L 23040641 23041701 -1501856 + Gypsy6_I LTR Gypsy 5952 7011 -1 3 760 1737 108 16 75 chr3L 23041704 23042025 -1501532 + Gypsy6A_LTR LTR Gypsy 1 302 -118 3 760 668 197 14 7 chr3L 23042194 23042342 -1501215 - DMCR1A LINE CR1 -275 4195 4047 3 760 2825 99 86 104 chr3L 23042348 23042932 -1500625 + DNAREP1_DM LINE Penelope 20 592 -2 3 760 380 139 83 0 chr3L 23042933 23043005 -1500552 - DMCR1A LINE CR1 -423 4047 3970 3 760 608 14 0 0 chr3L 23042999 23043069 -1500488 + DMCR1A LINE CR1 1132 1201 -3269 3 760 23 0 0 0 chr3L 23043344 23043367 -1500190 + AT_rich Low_complexity Low_complexity 1 23 0 3 760 15322 31 15 2 chr3L 23043453 23045458 -1498099 + DMCR1A LINE CR1 1194 3346 -1124 3 760 2973 25 82 0 chr3L 23045502 23045870 -1497687 + DMCR1A LINE CR1 3437 3834 -636 3 760 3130 31 123 0 chr3L 23045865 23046279 -1497278 + DMCR1A LINE CR1 4006 4470 0 3 760 434 48 63 0 chr3L 23046338 23046401 -1497156 + DMCR1A LINE CR1 4404 4470 0 3 760 344 158 0 0 chr3L 23046410 23046467 -1497090 - DMCR1A LINE CR1 -528 3942 3886 3 760 2770 122 293 1 chr3L 23046468 23047310 -1496247 - DMCR1A LINE CR1 -773 3697 2612 3 760 260 164 284 0 chr3L 23047493 23047560 -1495997 - R1_DM LINE R1 -1 5355 5270 3 760 1809 215 70 25 chr3L 23047573 23048055 -1495502 - R1_DM LINE R1 -258 5098 4595 3 760 1350 188 60 5 chr3L 23048107 23048512 -1495045 - DNAREP1_DM LINE Penelope -259 335 1 3 760 3355 66 28 16 chr3L 23049085 23049273 -1494284 - TRANSIB3 DNA Transib -28 2855 2667 3 760 228 35 0 0 chr3L 23049273 23049302 -1494255 + (TA)n Simple_repeat Simple_repeat 1 29 0 3 760 3355 66 28 16 chr3L 23049302 23049608 -1493949 - TRANSIB3 DNA Transib -217 2666 2356 3 760 1195 89 0 0 chr3L 23049607 23049776 -1493781 - TRANSIB3 DNA Transib -1281 1602 1434 3 760 1197 34 54 0 chr3L 23049774 23049922 -1493635 - TRANSIB3 DNA Transib -1571 1312 1157 3 760 3478 53 162 11 chr3L 23049922 23050524 -1493033 - TRANSIB3 DNA Transib -1858 1025 333 3 760 6034 307 65 12 chr3L 23050579 23053086 -1490471 - NINJA_I LTR Pao -1322 4689 2048 3 760 961 334 55 25 chr3L 23053198 23053951 -1489606 - NINJA_I LTR Pao -4110 1901 1099 3 760 9363 18 4 3 chr3L 23054674 23055778 -1487779 + PROTOP_A DNA P 1 1105 0 3 760 317 19 407 0 chr3L 23056081 23056135 -1487422 - TRANSIB3 DNA Transib -2807 76 1 3 760 257 197 0 15 chr3L 23056203 23056270 -1487287 + (TTA)n Simple_repeat Simple_repeat 1 66 0 3 760 25 0 0 0 chr3L 23057270 23057295 -1486262 + AT_rich Low_complexity Low_complexity 1 25 0 3 760 508 299 9 9 chr3L 23057852 23058094 -1485463 + Gypsy4_I LTR Gypsy 868 1051 -3626 3 760 788 257 24 24 chr3L 23058123 23058445 -1485112 + Gypsy4_I LTR Gypsy 2845 3153 -3135 3 760 8606 15 35 3 chr3L 23058449 23059520 -1484037 - PROTOP_A DNA P 0 1105 1 3 760 446 296 111 5 chr3L 23059520 23059719 -1483838 + Gypsy4_I LTR Gypsy 3165 3385 -2903 3 760 1248 322 40 25 chr3L 23059717 23060827 -1482730 + Gypsy4_I LTR Gypsy 3577 4541 -1594 3 760 574 298 42 44 chr3L 23060902 23061319 -1482238 + Gypsy4_I LTR Gypsy 4919 5289 -999 3 760 30 45 0 0 chr3L 23061366 23061410 -1482147 + AT_rich Low_complexity Low_complexity 1 44 0 3 760 21 0 0 0 chr3L 23061930 23061951 -1481606 + AT_rich Low_complexity Low_complexity 1 21 0 3 760 21 0 0 0 chr3L 23062001 23062022 -1481535 + AT_rich Low_complexity Low_complexity 1 21 0 3 760 963 97 94 25 chr3L 23062833 23063034 -1480523 - FB4_DM DNA Tc1 -1321 2768 2554 3 760 1032 159 9 46 chr3L 23063032 23063249 -1480308 - FB4_DM DNA Tc1 -1729 2360 2152 3 760 2606 108 138 8 chr3L 23063248 23063777 -1479780 - FB4_DM DNA Tc1 -2385 1704 1107 3 760 21 57 0 0 chr3L 23063927 23063962 -1479595 + AT_rich Low_complexity Low_complexity 1 35 0 3 760 4325 109 45 50 chr3L 23064052 23064930 -1478627 + Mariner2_DM DNA Tc1 1 912 0 3 760 3582 14 25 105 chr3L 23065383 23065934 -1477623 - DM176_LTR LTR Gypsy 0 507 1 3 760 2632 6 73 0 chr3L 23065934 23066276 -1477281 - DM176_I LTR Gypsy 0 6420 6054 3 11 47800 11 9 2 chr3L 23066250 23071608 -1471949 - DM176_I LTR Gypsy -520 5900 502 3 761 181 30 29 57 chr3L 23071608 23071643 -1471914 + (TTA)n Simple_repeat Simple_repeat 3 36 0 3 761 47800 11 9 2 chr3L 23071643 23072139 -1471418 - DM176_I LTR Gypsy -5919 501 1 3 761 2020 20 16 0 chr3L 23072139 23072392 -1471165 - DM176_LTR LTR Gypsy 0 507 251 3 761 2184 11 0 78 chr3L 23072393 23072700 -1470857 - DM176_LTR LTR Gypsy -224 283 1 3 761 1679 58 46 0 chr3L 23073525 23073765 -1469792 - S2_DM DNA Tc1 -542 1193 943 3 761 1545 42 362 18 chr3L 23073765 23074355 -1469202 - PROTOP_B DNA P 0 1153 358 3 761 839 34 99 33 chr3L 23074369 23074520 -1469037 - S2_DM DNA Tc1 -1574 161 1 3 761 681 140 0 0 chr3L 23074554 23074690 -1468867 + (AATAG)n Simple_repeat Simple_repeat 1 136 0 3 761 26 0 0 0 chr3L 23074731 23074757 -1468800 + AT_rich Low_complexity Low_complexity 1 26 0 3 761 978 105 216 0 chr3L 23074869 23075050 -1468507 - DNAREP1_DM LINE Penelope -166 428 209 3 761 209 133 53 0 chr3L 23076598 23076673 -1466884 + (TA)n Simple_repeat Simple_repeat 1 79 0 3 761 378 72 107 134 chr3L 23076674 23076786 -1466771 + DNAREP1_DM LINE Penelope 58 166 -428 3 761 6024 72 39 37 chr3L 23076767 23077755 -1465802 + PROTOP_A DNA P 116 1104 -1 3 761 671 84 131 0 chr3L 23077755 23077861 -1465696 + DNAREP1_DM LINE Penelope 447 566 -28 3 761 793 150 0 0 chr3L 23078175 23078308 -1465249 + DNAREP1_DM LINE Penelope 307 439 -155 3 761 5568 57 5 22 chr3L 23078383 23079201 -1464356 - FW3_DM LINE Jockey -518 3443 2427 3 761 3422 47 13 0 chr3L 23079206 23079653 -1463904 - FW3_DM LINE Jockey -1001 2131 1679 3 761 308 49 0 0 chr3L 23079644 23079685 -1463872 - FW3_DM LINE Jockey -2377 755 715 3 761 863 29 0 0 chr3L 23079700 23079805 -1463752 - FW3_DM LINE Jockey -1283 1849 1745 3 761 514 59 0 0 chr3L 23079800 23079868 -1463689 - FW3_DM LINE Jockey -1994 1138 1071 3 761 937 205 51 16 chr3L 23079875 23080277 -1463280 - FW3_DM LINE Jockey -3006 126 1 3 761 1945 180 17 12 chr3L 23080262 23080679 -1462878 - DOC4_DM LINE Jockey -2346 445 27 3 761 24 32 0 0 chr3L 23080699 23080730 -1462827 + AT_rich Low_complexity Low_complexity 1 31 0 3 761 25 51 0 0 chr3L 23081483 23081522 -1462035 + AT_rich Low_complexity Low_complexity 1 39 0 3 761 946 177 43 24 chr3L 23081727 23081981 -1461576 + DNAREP1_DM LINE Penelope 85 343 -251 3 761 6592 74 37 78 chr3L 23082419 23083622 -1459935 - PROTOP_B DNA P 0 1153 1 3 761 331 165 129 0 chr3L 23085604 23085689 -1457868 - DIVER2_I LTR Pao -3151 996 901 3 761 300 267 0 0 chr3L 23086018 23086093 -1457464 - DIVER2_I LTR Pao -3635 512 438 3 761 22 35 0 0 chr3L 23087541 23087570 -1455987 + AT_rich Low_complexity Low_complexity 1 29 0 3 761 21 36 0 0 chr3L 23088408 23088436 -1455121 + AT_rich Low_complexity Low_complexity 1 28 0 3 761 6719 72 80 10 chr3L 23089380 23090442 -1453115 - S2_DM DNA Tc1 -599 1136 1 3 761 514 188 21 14 chr3L 23090751 23090891 -1452666 + MINOS DNA Tc1 313 453 -1322 3 761 271 60 0 39 chr3L 23090893 23090945 -1452612 + (TATAA)n Simple_repeat Simple_repeat 5 54 0 3 761 242 91 0 0 chr3L 23090949 23090982 -1452575 - S_DM DNA Tc1 0 1736 1704 3 761 9752 98 12 14 chr3L 23090966 23092511 -1451046 - S_DM DNA Tc1 -194 1542 1 3 761 26 82 0 0 chr3L 23093252 23093313 -1450244 + AT_rich Low_complexity Low_complexity 1 61 0 3 761 25 31 0 0 chr3L 23093726 23093758 -1449799 + AT_rich Low_complexity Low_complexity 1 32 0 3 761 22 56 0 0 chr3L 23094704 23094740 -1448817 + AT_rich Low_complexity Low_complexity 1 36 0 3 761 21 57 0 0 chr3L 23094778 23094813 -1448744 + AT_rich Low_complexity Low_complexity 1 35 0 3 761 28 29 0 0 chr3L 23096622 23096657 -1446900 + AT_rich Low_complexity Low_complexity 1 35 0 3 761 1445 164 196 21 chr3L 23096748 23097171 -1446386 + PROTOP DNA P 1 499 -3981 3 761 26 30 0 0 chr3L 23097200 23097233 -1446324 + AT_rich Low_complexity Low_complexity 1 33 0 3 761 23 68 0 0 chr3L 23097307 23097351 -1446206 + AT_rich Low_complexity Low_complexity 1 44 0 3 761 628 187 223 7 chr3L 23097436 23097723 -1445834 + PROTOP DNA P 4127 4479 -1 3 761 653 277 14 0 chr3L 23097785 23097998 -1445559 - OSVALDO_I LTR Gypsy -6007 646 431 3 761 681 129 53 8 chr3L 23098821 23098954 -1444603 - Gypsy8_LTR LTR Gypsy -98 206 68 3 761 7015 28 124 5 chr3L 23099232 23100206 -1443351 - G4_DM LINE Jockey 0 3856 2767 3 761 6308 28 36 42 chr3L 23100216 23101103 -1442454 - G4_DM LINE Jockey -1216 2640 1759 3 761 3339 24 14 0 chr3L 23101113 23101529 -1442028 + DMCR1A LINE CR1 2923 3344 -1126 3 761 8136 28 34 0 chr3L 23101551 23102574 -1440983 + DMCR1A LINE CR1 3411 4468 -2 3 761 383 194 0 108 chr3L 23102732 23102871 -1440686 + DM297_I LTR Gypsy 104 227 -5940 3 761 183 42 0 0 chr3L 23102897 23102921 -1440636 + (A)n Simple_repeat Simple_repeat 1 24 0 3 761 337 211 0 0 chr3L 23102971 23103042 -1440515 + DM297_I LTR Gypsy 454 524 -5643 3 761 945 53 12 122 chr3L 23104033 23104205 -1439352 - DMCR1A LINE CR1 0 4470 4318 3 761 44396 8 8 1 chr3L 23105693 23106585 -1436972 + R1_DM LINE R1 1 896 -4460 3 761 210 71 0 0 chr3L 23106585 23106613 -1436944 + (CCG)n Simple_repeat Simple_repeat 1 28 0 3 761 44396 8 8 1 chr3L 23106613 23110991 -1432566 + R1_DM LINE R1 897 5307 -49 3 761 252 89 89 0 chr3L 23111151 23111196 -1432361 - DNAREP1_DM LINE Penelope -149 445 397 3 761 29 0 0 0 chr3L 23111383 23111412 -1432145 + AT_rich Low_complexity Low_complexity 1 29 0 3 761 1193 148 67 34 chr3L 23111754 23111992 -1431565 - DNAREP1_DM LINE Penelope -16 578 333 3 761 2591 39 0 12 chr3L 23112057 23112395 -1431162 + DMCR1A LINE CR1 1 334 -4136 3 761 23685 29 4 0 chr3L 23112393 23115164 -1428393 + DMCR1A LINE CR1 566 3346 -1124 3 761 2869 36 82 0 chr3L 23115184 23115548 -1428009 + DMCR1A LINE CR1 3411 3804 -666 3 761 572 198 0 0 chr3L 23115578 23115689 -1427868 - DNAREP1_DM LINE Penelope -361 233 123 3 761 409 131 0 0 chr3L 23115714 23115775 -1427782 - DNAREP1_DM LINE Penelope -533 61 1 3 761 1575 45 0 19 chr3L 23115855 23116061 -1427496 - ROOA_LTR LTR Pao 0 386 185 3 761 315 175 175 0 chr3L 23116455 23116535 -1427022 - DNAREP1_DM LINE Penelope -34 560 467 3 761 189 74 0 0 chr3L 23116660 23116687 -1426870 + (TA)n Simple_repeat Simple_repeat 1 27 0 3 761 864 174 62 162 chr3L 23116826 23117134 -1426423 + HOBO DNA hAT 1 277 -2739 3 761 38 0 0 0 chr3L 23117167 23117205 -1426352 + AT_rich Low_complexity Low_complexity 1 38 0 3 761 23 0 0 0 chr3L 23117222 23117245 -1426312 + AT_rich Low_complexity Low_complexity 1 23 0 3 761 834 205 62 90 chr3L 23117265 23117608 -1425949 - Gypsy8_LTR LTR Gypsy -3 301 1 3 761 408 200 10 10 chr3L 23117621 23117722 -1425835 + HOBO DNA hAT 2915 3015 -1 3 761 1874 118 18 68 chr3L 23117958 23118341 -1425216 - FB4_DM DNA Tc1 -1370 2719 2356 3 761 1220 155 141 0 chr3L 23118331 23118608 -1424949 - FB4_DM DNA Tc1 -2661 1428 1113 3 761 33 25 0 0 chr3L 23119505 23119545 -1424012 + AT_rich Low_complexity Low_complexity 1 40 0 3 761 30 0 0 0 chr3L 23120629 23120659 -1422898 + AT_rich Low_complexity Low_complexity 1 30 0 3 761 351 167 0 0 chr3L 23121508 23121568 -1421989 + DNAREP1_DM LINE Penelope 2 61 -533 3 761 772 114 8 15 chr3L 23121585 23121719 -1421838 + DNAREP1_DM LINE Penelope 141 273 -321 3 761 771 94 327 21 chr3L 23121733 23121935 -1421622 + DNAREP1_DM LINE Penelope 331 594 0 3 761 3499 143 19 0 chr3L 23121950 23122537 -1421020 + FB4_DM DNA Tc1 1942 2539 -1550 3 761 610 130 30 22 chr3L 23122549 23122683 -1420874 + FB4_DM DNA Tc1 2622 2756 -1333 3 761 1262 71 0 29 chr3L 23122685 23122860 -1420697 - DNAREP1_DM LINE Penelope -104 490 321 3 761 4249 52 53 8 chr3L 23122858 23123465 -1420092 + PROTOP_B DNA P 504 1137 -16 3 761 278 61 0 0 chr3L 23123470 23123503 -1420054 - DNAREP1_DM LINE Penelope -542 52 20 3 761 26 50 0 0 chr3L 23124170 23124210 -1419347 + AT_rich Low_complexity Low_complexity 1 40 0 3 761 2152 50 125 13 chr3L 23125480 23125783 -1417774 + Mariner2_DM DNA Tc1 97 433 -479 3 761 2426 84 105 22 chr3L 23126190 23126590 -1416967 + Mariner2_DM DNA Tc1 479 911 -1 3 761 2357 138 10 25 chr3L 23127174 23127582 -1415975 - GTWIN_LTR LTR Gypsy -93 402 1 3 761 397 262 109 16 chr3L 23127818 23127946 -1415611 + DIVER2_I LTR Pao 741 880 -3267 3 761 8428 60 12 3 chr3L 23128440 23129566 -1413991 + PROTOP_B DNA P 1 1137 -16 3 761 278 61 0 0 chr3L 23129571 23129604 -1413953 - DNAREP1_DM LINE Penelope -542 52 20 3 761 26 50 0 0 chr3L 23130271 23130311 -1413246 + AT_rich Low_complexity Low_complexity 1 40 0 3 761 2152 50 125 13 chr3L 23131581 23131884 -1411673 + Mariner2_DM DNA Tc1 97 433 -479 3 761 2426 84 105 22 chr3L 23132291 23132691 -1410866 + Mariner2_DM DNA Tc1 479 911 -1 3 761 2357 138 10 25 chr3L 23133275 23133683 -1409874 - GTWIN_LTR LTR Gypsy -93 402 1 3 761 397 262 109 16 chr3L 23133919 23134047 -1409510 + DIVER2_I LTR Pao 741 880 -3267 3 761 9575 14 0 1 chr3L 23134541 23135647 -1407910 + PROTOP_A DNA P 1 1105 0 3 761 2359 145 19 28 chr3L 23135983 23136410 -1407147 + Invader1_LTR LTR Gypsy 1 423 0 3 761 27 0 0 0 chr3L 23136718 23136745 -1406812 + AT_rich Low_complexity Low_complexity 1 27 0 3 761 228 246 0 0 chr3L 23137514 23137575 -1405982 - MAX_LTR LTR Pao -259 62 2 3 761 1976 168 297 11 chr3L 23138110 23138676 -1404881 - DMCR1A LINE CR1 -2529 1941 1214 3 761 7276 51 10 1 chr3L 23139648 23140684 -1402873 + PROTOP_B DNA P 56 1134 -19 3 761 206 241 0 0 chr3L 23140769 23140823 -1402734 + T-rich Low_complexity Low_complexity 1 54 0 3 761 52 0 0 0 chr3L 23140952 23141004 -1402553 + AT_rich Low_complexity Low_complexity 1 52 0 3 761 25 0 0 0 chr3L 23143679 23143704 -1399853 + AT_rich Low_complexity Low_complexity 1 25 0 3 761 316 201 12 8 chr3L 23143930 23143996 -1399561 + DNAREP1_DM LINE Penelope 432 489 -105 3 761 3350 42 22 2 chr3L 23143996 23144407 -1399150 - Gypsy6A_LTR LTR Gypsy 0 420 2 3 761 1787 324 25 17 chr3L 23144410 23145125 -1398432 - Gypsy6_I LTR Gypsy 0 7012 6292 3 761 1476 238 128 0 chr3L 23145208 23145607 -1397950 - Gypsy6_I LTR Gypsy -2491 4521 4072 3 761 999 245 5 0 chr3L 23145611 23145819 -1397738 - Gypsy3_I LTR Gypsy -2866 3311 3103 3 761 4032 283 35 6 chr3L 23145815 23146973 -1396584 - Gypsy6_I LTR Gypsy -3647 3365 1508 3 761 1806 295 72 38 chr3L 23147007 23147781 -1395776 - Gypsy6_I LTR Gypsy -4937 2075 1275 3 761 2991 47 44 10 chr3L 23148065 23148454 -1395103 - Gypsy6A_LTR LTR Gypsy 0 420 19 3 761 27 0 0 0 chr3L 23148687 23148714 -1394843 + AT_rich Low_complexity Low_complexity 1 27 0 3 761 1434 182 274 22 chr3L 23148942 23149427 -1394130 + Gypsy8_I LTR Gypsy 1824 2430 -1917 3 761 1836 176 144 44 chr3L 23149424 23150014 -1393543 + Gypsy8_I LTR Gypsy 2603 3251 -1096 3 761 581 37 136 0 chr3L 23150100 23150181 -1393376 - DNAREP1_DM LINE Penelope 0 594 503 3 761 586 118 9 35 chr3L 23150180 23150294 -1393263 - DNAREP1_DM LINE Penelope -380 214 104 3 761 5942 0 0 0 chr3L 23150297 23150955 -1392602 - QUASIMODO_LTR LTR Gypsy 0 658 1 3 761 52525 3 1 2 chr3L 23150955 23157025 -1386532 - QUASIMODO_I LTR Gypsy 0 6060 1 3 761 5923 1 0 0 chr3L 23157025 23157683 -1385874 - QUASIMODO_LTR LTR Gypsy 0 658 1 3 761 733 89 0 10 chr3L 23157689 23157791 -1385766 - DNAREP1_DM LINE Penelope -493 101 1 3 761 1086 153 11 5 chr3L 23157817 23158008 -1385549 + HOBO DNA hAT 1 192 -2824 3 761 792 171 105 77 chr3L 23158090 23158299 -1385258 + HOBO DNA hAT 194 408 -2608 3 761 339 125 56 0 chr3L 23158289 23158361 -1385196 + HOBO DNA hAT 2337 2412 -604 3 761 49 18 0 0 chr3L 23158361 23158417 -1385140 + AT_rich Low_complexity Low_complexity 1 56 0 3 761 1933 149 184 57 chr3L 23158441 23158968 -1384589 + HOBO DNA hAT 2422 3015 -1 3 761 253 83 0 0 chr3L 23159029 23159065 -1384492 + DNAREP1_DM LINE Penelope 457 492 -102 3 761 5942 0 0 0 chr3L 23159065 23159723 -1383834 - QUASIMODO_LTR LTR Gypsy 0 658 1 3 761 52525 3 1 2 chr3L 23159723 23165793 -1377764 - QUASIMODO_I LTR Gypsy 0 6060 1 3 761 5942 0 0 0 chr3L 23165793 23166451 -1377106 - QUASIMODO_LTR LTR Gypsy 0 658 1 3 761 21 0 0 0 chr3L 23166451 23166472 -1377085 + AT_rich Low_complexity Low_complexity 1 21 0 3 761 496 127 180 36 chr3L 23166572 23166711 -1376846 + DNAREP1_DM LINE Penelope 143 301 -293 3 761 670 125 54 0 chr3L 23166774 23166886 -1376671 + DNAREP1_DM LINE Penelope 477 594 0 3 761 472 196 0 10 chr3L 23167089 23167192 -1376365 - DNAREP1_DM LINE Penelope -492 102 1 3 761 25 0 0 0 chr3L 23167914 23167939 -1375618 + AT_rich Low_complexity Low_complexity 1 25 0 3 761 1797 102 108 3 chr3L 23168124 23168448 -1375109 - DNAREP1_DM LINE Penelope -72 522 165 3 761 866 90 0 22 chr3L 23168549 23168686 -1374871 + DNAREP1_DM LINE Penelope 1 134 -460 3 761 661 83 215 0 chr3L 23168691 23168812 -1374745 + DNAREP1_DM LINE Penelope 428 574 -20 3 761 236 0 0 0 chr3L 23169158 23169185 -1374372 + DNAREP1_DM LINE Penelope 568 594 0 3 761 300 91 0 0 chr3L 23169354 23169398 -1374159 + DNAREP1_DM LINE Penelope 510 553 -41 3 761 799 141 178 0 chr3L 23169505 23169696 -1373861 + DNAREP1_DM LINE Penelope 40 264 -330 3 761 3804 31 114 0 chr3L 23169715 23170450 -1373107 - DMCR1A LINE CR1 0 4470 3652 3 761 2050 31 19 0 chr3L 23170454 23170715 -1372842 - DMCR1A LINE CR1 -1241 3229 2964 3 761 4375 28 2 0 chr3L 23170710 23171243 -1372314 - DMCR1A LINE CR1 -2064 2406 1873 3 761 2113 37 355 0 chr3L 23171254 23171819 -1371738 - DMCR1A LINE CR1 -3360 1110 344 3 761 1713 39 0 13 chr3L 23171815 23172052 -1371505 - DMCR1A LINE CR1 -4236 234 1 3 761 797 107 0 51 chr3L 23172055 23172193 -1371364 + DNAREP1_DM LINE Penelope 342 472 -122 3 761 562 13 158 0 chr3L 23172238 23172314 -1371243 + PROTOP_A DNA P 1 88 -1017 3 761 11469 18 10 5 chr3L 23172314 23173742 -1369815 - M4DM DNA Transib 0 1435 1 3 761 8285 22 0 3 chr3L 23173742 23174767 -1368790 + PROTOP_A DNA P 84 1105 0 3 761 359 240 0 65 chr3L 23177411 23177518 -1366039 + DNAREP1_DM LINE Penelope 362 461 -133 3 761 374 181 221 0 chr3L 23177639 23177766 -1365791 - DNAREP1_DM LINE Penelope -238 356 202 3 761 24 67 0 0 chr3L 23178432 23178477 -1365080 + AT_rich Low_complexity Low_complexity 1 45 0 3 761 281 195 84 12 chr3L 23179187 23179270 -1364287 - Gypsy8_LTR LTR Gypsy -148 156 68 3 761 362 168 290 0 chr3L 23179415 23179553 -1364004 + DNAREP1_DM LINE Penelope 408 585 -9 3 761 924 181 159 59 chr3L 23179581 23179939 -1363618 + DNAREP1_DM LINE Penelope 199 592 -2 3 761 929 301 41 41 chr3L 23180628 23181064 -1362493 - DIVER2_I LTR Pao -2 4145 3710 3 761 269 227 0 15 chr3L 23181713 23181780 -1361777 - DIVER2_I LTR Pao -2313 1834 1769 3 761 23 54 0 0 chr3L 23182061 23182098 -1361459 + AT_rich Low_complexity Low_complexity 1 37 0 3 761 27 29 0 0 chr3L 23182546 23182580 -1360977 + AT_rich Low_complexity Low_complexity 1 34 0 3 761 935 149 106 9 chr3L 23182801 23183018 -1360539 - DNAREP1_DM LINE Penelope -142 452 215 3 761 226 319 0 11 chr3L 23184002 23184094 -1359463 - TV1I LTR Gypsy -4999 964 874 3 761 1915 127 121 36 chr3L 23184406 23184937 -1358620 - DNAREP1_DM LINE Penelope 0 594 86 3 761 329 174 0 0 chr3L 23185019 23185088 -1358469 - ROO_I LTR Pao -2371 5885 5817 3 761 682 246 232 7 chr3L 23185116 23185530 -1358027 - Stalker2_I LTR Gypsy -509 5827 5321 3 761 549 198 261 28 chr3L 23186059 23186412 -1357145 - Stalker2_I LTR Gypsy -2003 5399 5008 3 761 2440 234 122 8 chr3L 23186405 23187317 -1356240 - Stalker2_I LTR Gypsy -2624 4778 3763 3 761 699 190 97 154 chr3L 23187372 23187794 -1355763 + Gypsy3_LTR LTR Gypsy 1 398 0 3 761 244 239 48 71 chr3L 23188618 23188744 -1354813 - Stalker2_I LTR Gypsy -5524 1878 1756 3 761 306 261 18 9 chr3L 23188735 23188847 -1354710 - MDG1_I LTR Gypsy -5161 1435 1323 3 761 965 101 267 44 chr3L 23189157 23189587 -1353970 - DNAREP1_DM LINE Penelope 0 594 1 3 761 430 272 139 4 chr3L 23189566 23189817 -1353740 - Copia_I LTR Copia -508 4085 3801 3 761 931 279 113 9 chr3L 23189912 23190479 -1353078 - Copia_I LTR Copia -2405 2188 1563 3 761 1251 0 0 0 chr3L 23191125 23191268 -1352289 - Invader1_LTR LTR Gypsy 0 423 281 3 761 1032 31 0 0 chr3L 23191279 23191406 -1352151 - Invader1_LTR LTR Gypsy -296 127 1 3 761 385 151 21 11 chr3L 23191793 23191887 -1351670 - ROO_I LTR Pao -8056 200 106 3 761 485 179 123 25 chr3L 23191936 23192103 -1351454 + DNAREP1_DM LINE Penelope 117 304 -290 3 761 14007 4 0 0 chr3L 23192134 23193779 -1349778 + G6_DM LINE Jockey 1 1645 -397 3 761 1261 19 0 0 chr3L 23193777 23193937 -1349620 + G6_DM LINE Jockey 1883 2042 0 3 761 432 127 51 0 chr3L 23193955 23194034 -1349523 + DNAREP1_DM LINE Penelope 349 431 -163 3 761 14039 38 27 1 chr3L 23194047 23195851 -1347706 + DMCR1A LINE CR1 8 1858 -2612 3 761 12403 29 5 3 chr3L 23195847 23197390 -1346167 + DMCR1A LINE CR1 1984 3529 -941 3 761 723 178 11 40 chr3L 23197375 23197551 -1346006 + DNAREP1_DM LINE Penelope 283 453 -141 3 761 271 202 12 37 chr3L 23198093 23198175 -1345382 + DNAREP1_DM LINE Penelope 436 515 -79 3 761 283 125 0 0 chr3L 23198575 23198623 -1344934 - DNAREP1_DM LINE Penelope -53 541 494 3 761 548 96 148 37 chr3L 23198846 23198954 -1344603 - DNAREP1_DM LINE Penelope -57 537 418 3 761 43 20 0 0 chr3L 23199213 23199263 -1344294 + AT_rich Low_complexity Low_complexity 1 50 0 3 762 763 116 289 35 chr3L 23200460 23200788 -1342769 - DNAREP1_DM LINE Penelope -130 464 1 3 762 352 109 0 35 chr3L 23201269 23201326 -1342231 + DMCR1A LINE CR1 3828 3882 -588 3 762 3189 71 39 0 chr3L 23201327 23201789 -1341768 - DMCR1A LINE CR1 -1659 2811 2332 3 762 1136 60 108 0 chr3L 23201784 23201950 -1341607 - DMCR1A LINE CR1 -3030 1440 1257 3 762 1490 67 0 28 chr3L 23201949 23202165 -1341392 - DMCR1A LINE CR1 -3463 1007 798 3 762 764 56 0 18 chr3L 23202151 23202260 -1341297 - DMCR1A LINE CR1 -3843 627 521 3 762 788 197 26 18 chr3L 23202408 23202746 -1340811 + DNAREP1_DM LINE Penelope 90 332 -262 3 762 846 92 288 7 chr3L 23202757 23203047 -1340510 + DNAREP1_DM LINE Penelope 208 578 -16 3 762 10036 60 12 4 chr3L 23204309 23205747 -1337810 - HELENA_RT LINE Jockey 0 1317 7 3 762 436 204 5 156 chr3L 23205822 23206008 -1337549 - BS LINE Jockey -3642 1484 1327 3 762 25 65 0 0 chr3L 23206982 23207028 -1336529 + AT_rich Low_complexity Low_complexity 1 46 0 3 762 319 134 224 0 chr3L 23207119 23207186 -1336371 - DNAREP1_DM LINE Penelope -512 82 1 3 762 234 243 153 42 chr3L 23207182 23207397 -1336160 - MDG1_I LTR Gypsy -6236 360 122 3 762 412 176 328 0 chr3L 23207699 23207830 -1335727 - MDG1_I LTR Gypsy -2378 4218 4045 3 762 838 137 37 6 chr3L 23207862 23208024 -1335533 - MDG1_I LTR Gypsy -2801 3795 3629 3 762 469 199 40 61 chr3L 23208802 23209000 -1334557 - Gypsy_LTR LTR Gypsy -157 325 132 3 762 23 0 0 0 chr3L 23209000 23209023 -1334534 + AT_rich Low_complexity Low_complexity 1 23 0 3 762 288 158 9 2 chr3L 23209306 23209376 -1334181 + DNAREP1_DM LINE Penelope 117 175 -419 3 762 896 124 126 3 chr3L 23209413 23209696 -1333861 + DNAREP1_DM LINE Penelope 129 486 -108 3 762 563 194 38 28 chr3L 23209817 23210007 -1333550 + DNAREP1_DM LINE Penelope 44 366 -228 3 762 21 36 0 0 chr3L 23210263 23210291 -1333266 + AT_rich Low_complexity Low_complexity 1 28 0 3 762 299 191 119 0 chr3L 23210673 23210757 -1332800 - Transib-N1_DM DNA Transib -399 115 22 3 762 323 143 43 0 chr3L 23210809 23210879 -1332678 + DNAREP1_DM LINE Penelope 493 565 -29 3 762 489 104 52 0 chr3L 23211491 23211568 -1331989 - DNAREP1_DM LINE Penelope -225 369 289 3 762 1076 178 149 0 chr3L 23211867 23212176 -1331381 - DNAREP1_DM LINE Penelope -239 355 1 3 762 615 110 71 11 chr3L 23212780 23212907 -1330650 + DM297_LTR LTR Gypsy 279 470 -4 3 762 334 132 129 29 chr3L 23212951 23213021 -1330536 + BS2 LINE Jockey 242 318 -4403 3 762 22 0 0 0 chr3L 23213054 23213076 -1330481 + AT_rich Low_complexity Low_complexity 1 22 0 3 762 1691 103 26 0 chr3L 23213076 23213348 -1330209 - BS2 LINE Jockey 0 4721 4443 3 762 1506 290 124 7 chr3L 23213681 23214407 -1329150 + BS2 LINE Jockey 601 1411 -3310 3 762 22364 48 11 0 chr3L 23214455 23217341 -1326216 + BS2 LINE Jockey 1799 4715 -6 3 762 200 59 0 29 chr3L 23217341 23217376 -1326181 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 3 762 387 138 182 11 chr3L 23217840 23217928 -1325629 + DMRP1 Unknown Unknown 28 130 -216 3 762 1290 91 62 22 chr3L 23218904 23219130 -1324427 + DNAREP1_DM LINE Penelope 1 235 -359 3 762 2498 148 48 1 chr3L 23219132 23219672 -1323885 + DNAREP1_DM LINE Penelope 127 594 0 3 762 22 56 0 0 chr3L 23219685 23219721 -1323836 + AT_rich Low_complexity Low_complexity 1 36 0 3 762 359 162 0 0 chr3L 23219795 23219869 -1323688 + DNAREP1_DM LINE Penelope 97 170 -424 3 762 1413 129 193 23 chr3L 23219898 23220388 -1323169 + DNAREP1_DM LINE Penelope 141 594 0 3 762 385 171 0 0 chr3L 23220392 23220468 -1323089 + DMRP1 Unknown Unknown 233 308 -38 3 762 21 0 0 0 chr3L 23220664 23220685 -1322872 + AT_rich Low_complexity Low_complexity 1 21 0 3 762 314 231 67 9 chr3L 23221522 23221627 -1321930 - DNAREP1_DM LINE Penelope -108 486 376 3 762 676 284 84 50 chr3L 23222176 23222535 -1321022 - DIVER2_I LTR Pao -2401 1746 1376 3 762 536 316 27 8 chr3L 23223998 23224256 -1319301 - STALKER4_I LTR Gypsy -1920 4610 4348 3 762 1247 135 135 0 chr3L 23224331 23224464 -1319093 + DNAREP1_DM LINE Penelope 295 430 -164 3 762 195 129 0 0 chr3L 23224464 23224495 -1319062 + (CGGA)n Simple_repeat Simple_repeat 4 34 0 3 762 1247 135 135 0 chr3L 23224495 23224590 -1318967 + DNAREP1_DM LINE Penelope 431 552 -42 3 762 49 0 0 0 chr3L 23225074 23225123 -1318434 + AT_rich Low_complexity Low_complexity 1 49 0 3 762 23 0 0 0 chr3L 23225363 23225386 -1318171 + AT_rich Low_complexity Low_complexity 1 23 0 3 762 227 297 0 0 chr3L 23226233 23226324 -1317233 - TV1I LTR Gypsy -1861 4102 4012 3 762 23 0 0 0 chr3L 23226933 23226956 -1316601 + AT_rich Low_complexity Low_complexity 1 23 0 3 762 8086 45 53 1 chr3L 23226982 23228043 -1315514 - S2_DM DNA Tc1 -619 1116 1 3 762 1418 261 6 6 chr3L 23228279 23228633 -1314924 - DIVER2_I LTR Pao -223 3924 3571 3 762 994 135 22 108 chr3L 23228739 23228971 -1314586 - DMLTR5 LTR Gypsy 0 266 55 3 762 1234 322 92 21 chr3L 23229827 23230535 -1313022 - DIVER2_I LTR Pao -1754 2393 1636 3 762 230 318 12 12 chr3L 23230895 23230981 -1312576 - DIVER2_I LTR Pao -2955 1192 1107 3 762 38 39 0 0 chr3L 23232238 23232290 -1311267 + AT_rich Low_complexity Low_complexity 1 52 0 3 762 28 79 0 0 chr3L 23232712 23232775 -1310782 + AT_rich Low_complexity Low_complexity 1 63 0 3 762 21 57 0 0 chr3L 23232858 23232893 -1310664 + AT_rich Low_complexity Low_complexity 1 35 0 3 762 27 0 0 0 chr3L 23232909 23232936 -1310621 + AT_rich Low_complexity Low_complexity 1 27 0 3 762 33 0 0 0 chr3L 23233138 23233171 -1310386 + AT_rich Low_complexity Low_complexity 1 33 0 3 762 23 0 0 0 chr3L 23233782 23233805 -1309752 + AT_rich Low_complexity Low_complexity 1 23 0 3 762 8247 38 14 30 chr3L 23235015 23236138 -1307419 + PROTOP_A DNA P 1 1105 0 3 762 339 328 73 31 chr3L 23236475 23236802 -1306755 - DIVER_I LTR Pao -2675 2968 2628 3 762 334 269 27 54 chr3L 23239184 23239333 -1304224 + DNAREP1_DM LINE Penelope 279 423 -171 3 762 321 222 36 36 chr3L 23239345 23239429 -1304128 + DNAREP1_DM LINE Penelope 502 585 -9 3 762 28 61 0 0 chr3L 23239898 23239947 -1303610 + AT_rich Low_complexity Low_complexity 1 49 0 3 762 1161 162 5 5 chr3L 23241138 23241343 -1302214 - DNAREP1_DM LINE Penelope -198 396 192 3 762 363 200 0 0 chr3L 23241368 23241438 -1302119 - DNAREP1_DM LINE Penelope -522 72 3 3 762 22 0 0 0 chr3L 23241485 23241507 -1302050 + AT_rich Low_complexity Low_complexity 1 22 0 3 762 435 136 0 0 chr3L 23242001 23242067 -1301490 - PROTOP_B DNA P 0 1153 1088 3 762 577 149 20 60 chr3L 23242138 23242288 -1301269 - PROTOP_B DNA P -729 424 281 3 762 180 0 0 0 chr3L 23242354 23242374 -1301183 + (TATG)n Simple_repeat Simple_repeat 2 21 0 3 762 201 147 0 0 chr3L 23242546 23242580 -1300977 + (TATG)n Simple_repeat Simple_repeat 3 36 0 3 762 52 17 0 0 chr3L 23242663 23242722 -1300835 + AT_rich Low_complexity Low_complexity 1 59 0 3 762 264 182 18 0 chr3L 23243567 23243622 -1299935 - PROTOP_B DNA P -1091 62 7 3 762 229 279 19 37 chr3L 23244183 23244291 -1299266 - DNAREP1_DM LINE Penelope -403 191 86 3 762 256 293 24 24 chr3L 23244657 23244741 -1298816 + FW2_DM LINE Jockey 1229 1312 -2649 3 762 344 225 161 9 chr3L 23245230 23245342 -1298215 + DNAREP1_DM LINE Penelope 439 567 -27 3 762 1942 129 114 11 chr3L 23245724 23246076 -1297481 - DNAREP1_DM LINE Penelope 0 594 207 3 762 206 208 0 40 chr3L 23248681 23248731 -1294826 + A-rich Low_complexity Low_complexity 3 50 0 3 762 43 0 0 0 chr3L 23248735 23248778 -1294779 + AT_rich Low_complexity Low_complexity 1 43 0 3 762 21 0 0 0 chr3L 23248837 23248858 -1294699 + AT_rich Low_complexity Low_complexity 1 21 0 3 762 23 86 0 0 chr3L 23249099 23249157 -1294400 + AT_rich Low_complexity Low_complexity 1 58 0 3 762 192 125 0 0 chr3L 23249308 23249340 -1294217 + (TCTA)n Simple_repeat Simple_repeat 3 34 0 3 762 526 276 0 0 chr3L 23249449 23249583 -1293974 + G5_DM LINE Jockey 3418 3551 -1305 3 762 488 223 57 7 chr3L 23249871 23250011 -1293546 + DNAREP1_DM LINE Penelope 448 594 0 3 762 256 152 22 0 chr3L 23250029 23250075 -1293482 + DNAREP1_DM LINE Penelope 548 594 0 3 762 24 0 0 0 chr3L 23250387 23250411 -1293146 + AT_rich Low_complexity Low_complexity 1 24 0 3 762 622 328 71 8 chr3L 23251380 23251734 -1291823 - G5_DM LINE Jockey -260 4596 4221 3 762 515 290 55 14 chr3L 23251775 23251995 -1291562 - G5_DM LINE Jockey -714 4142 3914 3 762 780 330 22 18 chr3L 23252000 23252625 -1290932 - G5_DM LINE Jockey -1645 3211 2886 3 762 832 298 22 8 chr3L 23252685 23252952 -1290605 - G5_DM LINE Jockey -2231 2625 2355 3 762 331 266 117 14 chr3L 23253095 23253240 -1290317 - G5_DM LINE Jockey -2829 2027 1868 3 762 406 300 181 16 chr3L 23253384 23253698 -1289859 - G5_DM LINE Jockey -3193 1663 1298 3 762 389 55 0 83 chr3L 23253845 23253905 -1289652 + DNAREP1_DM LINE Penelope 1 55 -539 3 762 1035 141 15 45 chr3L 23253904 23254212 -1289345 + DNAREP1_DM LINE Penelope 117 332 -262 3 762 1253 122 87 76 chr3L 23254483 23254923 -1288634 + DNAREP1_DM LINE Penelope 24 559 -35 3 762 379 258 120 8 chr3L 23254936 23255061 -1288496 + DNAREP1_DM LINE Penelope 319 457 -137 3 762 43 56 0 0 chr3L 23255658 23255729 -1287828 + AT_rich Low_complexity Low_complexity 1 71 0 3 762 1201 179 132 27 chr3L 23256464 23256798 -1286759 + DNAREP1_DM LINE Penelope 1 369 -225 3 762 22 35 0 0 chr3L 23257094 23257123 -1286434 + AT_rich Low_complexity Low_complexity 1 29 0 3 762 27 62 0 0 chr3L 23257271 23257319 -1286238 + AT_rich Low_complexity Low_complexity 1 48 0 3 762 32 0 0 0 chr3L 23257469 23257501 -1286056 + AT_rich Low_complexity Low_complexity 1 32 0 3 762 363 187 147 45 chr3L 23258177 23258334 -1285223 + DNAREP1_DM LINE Penelope 98 270 -324 3 762 250 242 15 0 chr3L 23258372 23258438 -1285119 + DNAREP1_DM LINE Penelope 427 493 -101 3 762 3633 218 71 31 chr3L 23259032 23260106 -1283451 - DM297_I LTR Gypsy -4959 1208 92 3 762 2198 48 7 0 chr3L 23260106 23260631 -1282926 + DMCR1A LINE CR1 3896 4463 -7 3 762 585 219 17 51 chr3L 23260670 23260848 -1282709 - DM297_I LTR Gypsy -5995 172 1 3 762 349 75 313 0 chr3L 23260870 23260937 -1282620 - DM297_LTR LTR Gypsy -45 369 282 3 762 888 260 89 29 chr3L 23261157 23261683 -1281874 - TOM_I LTR Gypsy -330 5837 5204 3 762 262 156 30 30 chr3L 23261678 23261744 -1281813 - DM297_I LTR Gypsy -1412 4755 4690 3 762 255 87 64 21 chr3L 23261754 23261801 -1281756 - DM297_I LTR Gypsy -1656 4511 4463 3 762 1098 145 97 0 chr3L 23261790 23261997 -1281560 - DM297_I LTR Gypsy -1956 4211 3985 3 762 22 0 0 0 chr3L 23262026 23262048 -1281509 + AT_rich Low_complexity Low_complexity 1 22 0 3 762 309 161 0 0 chr3L 23262259 23262321 -1281236 + DNAREP1_DM LINE Penelope 141 202 -392 3 762 895 57 257 0 chr3L 23262324 23262464 -1281093 + DNAREP1_DM LINE Penelope 419 594 0 3 762 325 70 35 0 chr3L 23264059 23264116 -1279441 + (TA)n Simple_repeat Simple_repeat 1 59 0 3 762 254 125 0 77 chr3L 23264125 23264177 -1279380 + DNAREP1_DM LINE Penelope 537 584 -10 3 762 638 167 8 0 chr3L 23264608 23264734 -1278823 - Transib-N1_DM DNA Transib 0 514 388 3 762 25 0 0 0 chr3L 23264734 23264759 -1278798 + AT_rich Low_complexity Low_complexity 1 25 0 3 762 296 132 19 0 chr3L 23264759 23264812 -1278745 - Transib-N1_DM DNA Transib -118 396 343 3 762 2435 0 0 0 chr3L 23264860 23265126 -1278431 + Invader2_LTR LTR Gypsy 1 266 0 3 762 26608 9 15 0 chr3L 23265126 23269650 -1273907 + Invader2_I LTR Gypsy 1 4592 0 3 762 2435 0 0 0 chr3L 23269650 23269916 -1273641 + Invader2_LTR LTR Gypsy 1 266 0 3 762 197 119 24 0 chr3L 23270195 23270237 -1273320 + (TTA)n Simple_repeat Simple_repeat 2 44 0 3 762 35 71 0 0 chr3L 23270239 23270309 -1273248 + AT_rich Low_complexity Low_complexity 1 70 0 3 762 427 149 245 0 chr3L 23270503 23270597 -1272960 - Transib-N1_DM DNA Transib -396 118 2 3 762 23 0 0 0 chr3L 23270757 23270780 -1272777 + AT_rich Low_complexity Low_complexity 1 23 0 3 762 25 31 0 0 chr3L 23270897 23270929 -1272628 + AT_rich Low_complexity Low_complexity 1 32 0 3 762 474 93 187 14 chr3L 23270955 23271088 -1272469 - DNAREP1_DM LINE Penelope -149 445 247 3 762 307 236 26 60 chr3L 23272039 23272156 -1271401 + DNAREP1_DM LINE Penelope 398 510 -84 3 762 974 148 37 12 chr3L 23272196 23272383 -1271174 + DNAREP1_DM LINE Penelope 1 318 -276 3 762 234 146 139 47 chr3L 23272438 23272524 -1271033 + DMCR1A LINE CR1 51 144 -4326 3 762 289 167 13 77 chr3L 23272521 23272599 -1270958 + DMCR1A LINE CR1 344 416 -4054 3 762 502 116 306 0 chr3L 23272567 23272711 -1270846 + DMCR1A LINE CR1 216 403 -4067 3 762 551 191 184 97 chr3L 23272712 23272990 -1270567 + Gypsy8_LTR LTR Gypsy 1 302 -2 3 762 293 225 0 14 chr3L 23272992 23273064 -1270493 + Gypsy8_I LTR Gypsy 1 71 -4276 3 762 800 162 76 10 chr3L 23273475 23273835 -1269722 + DNAREP1_DM LINE Penelope 1 332 -262 3 762 6370 144 76 41 chr3L 23273874 23275154 -1268403 + DMCR1A LINE CR1 2250 3574 -896 3 762 294 53 0 0 chr3L 23275154 23275192 -1268365 + LOOPER1_DM DNA PiggyBac 1 38 -1843 3 762 1222 102 186 61 chr3L 23275209 23275505 -1268052 + LOOPER1_DM DNA PiggyBac 324 656 -1225 3 762 1739 99 56 41 chr3L 23276022 23276360 -1267197 + LOOPER1_DM DNA PiggyBac 1537 1879 -2 3 762 1300 92 4 84 chr3L 23276375 23276600 -1266957 + DMCR1A LINE CR1 3799 4005 -465 3 762 552 99 0 0 chr3L 23276601 23276682 -1266875 + DMCR1A LINE CR1 4159 4239 -231 3 762 26 107 0 0 chr3L 23276728 23276831 -1266726 + AT_rich Low_complexity Low_complexity 1 103 0 3 762 23 33 0 0 chr3L 23277031 23277061 -1266496 + AT_rich Low_complexity Low_complexity 1 30 0 3 762 291 116 0 0 chr3L 23277450 23277493 -1266064 - DNAREP1_DM LINE Penelope -4 590 548 3 762 276 265 0 0 chr3L 23277571 23277639 -1265918 - DNAREP1_DM LINE Penelope -239 355 288 3 762 894 247 30 30 chr3L 23277923 23278227 -1265330 + DNAREP1_DM LINE Penelope 17 320 -274 3 762 326 219 237 0 chr3L 23278256 23278370 -1265187 + DNAREP1_DM LINE Penelope 444 584 -10 3 762 248 178 0 43 chr3L 23279209 23279256 -1264301 + PENELOPE LINE Penelope 3938 3982 -179 3 762 808 178 34 17 chr3L 23279550 23279736 -1263821 - DNAREP1_DM LINE Penelope -275 319 4 3 762 33 80 0 0 chr3L 23280241 23280316 -1263241 + AT_rich Low_complexity Low_complexity 1 75 0 3 762 206 79 26 26 chr3L 23280592 23280631 -1262926 + (TTATA)n Simple_repeat Simple_repeat 3 41 0 3 762 626 316 0 0 chr3L 23280891 23281116 -1262441 - BLASTOPIA_I LTR Gypsy -706 3775 3551 3 762 887 135 0 29 chr3L 23281645 23281782 -1261775 + DNAREP1_DM LINE Penelope 325 457 -137 3 762 241 154 0 0 chr3L 23281816 23281855 -1261702 + DNAREP1_DM LINE Penelope 368 406 -188 3 762 1038 91 169 175 chr3L 23282231 23282563 -1260994 + DNAREP1_DM LINE Penelope 1 330 -264 3 762 552 114 159 0 chr3L 23282551 23282639 -1260918 + DNAREP1_DM LINE Penelope 438 539 -55 3 762 43554 3 0 0 chr3L 23283682 23288391 -1255166 + BS2 LINE Jockey 13 4721 0 3 762 7246 63 7 1 chr3L 23289148 23290057 -1253500 - BS3_DM LINE Jockey -1 1789 876 3 762 4852 61 8 0 chr3L 23290054 23290660 -1252897 - BS3_DM LINE Jockey -480 1310 700 3 762 2905 48 23 0 chr3L 23290677 23291030 -1252527 - BS3_DM LINE Jockey -1321 469 109 3 762 2850 153 102 12 chr3L 23291048 23292022 -1251535 - Gypsy_I LTR Gypsy -2632 3875 2815 3 762 1903 98 64 81 chr3L 23292033 23292378 -1251179 + DMCR1A LINE CR1 280 618 -3852 3 762 2116 49 44 22 chr3L 23292375 23292646 -1250911 + DMCR1A LINE CR1 798 1074 -3396 3 762 5139 36 8 7 chr3L 23292650 23293262 -1250295 + DMCR1A LINE CR1 1027 1639 -2831 3 762 698 115 0 65 chr3L 23293354 23293493 -1250064 - Gypsy8_I LTR Gypsy -4111 236 107 3 762 800 133 88 39 chr3L 23293490 23293815 -1249742 - Gypsy8_I LTR Gypsy -526 3821 3437 3 762 352 165 9 80 chr3L 23293903 23294015 -1249542 - Gypsy8_I LTR Gypsy -913 3434 3331 3 762 4389 99 55 57 chr3L 23294167 23294925 -1248632 - Gypsy8_I LTR Gypsy -1009 3338 2582 3 762 31 0 0 0 chr3L 23294925 23294956 -1248601 + AT_rich Low_complexity Low_complexity 1 31 0 3 762 9486 53 8 0 chr3L 23294956 23296137 -1247420 - DMRT1B LINE R1 -1 5182 3993 3 762 9193 80 33 9 chr3L 23296134 23297324 -1246233 - DMRT1B LINE R1 -3776 1407 143 3 762 180 0 0 0 chr3L 23297324 23297344 -1246213 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 3 762 9193 85 27 9 chr3L 23297344 23297524 -1246033 - DMRT1B LINE R1 -4847 336 2 3 762 8745 174 65 48 chr3L 23297695 23300908 -1242649 - Gypsy8_I LTR Gypsy -3022 3631 218 3 762 4595 39 6 0 chr3L 23300996 23301536 -1242021 - DMRT1A LINE R1 -10 5173 4631 3 762 3248 66 0 0 chr3L 23301548 23301957 -1241600 - DMRT1A LINE R1 -937 4246 3838 3 762 13566 56 68 5 chr3L 23301960 23303811 -1239746 - DMRT1A LINE R1 -1779 3404 1436 3 762 2219 64 0 25 chr3L 23303793 23304112 -1239445 - DMRT1A LINE R1 -3967 1216 906 3 762 3933 91 36 0 chr3L 23304117 23304668 -1238889 - DMRT1A LINE R1 -4612 571 1 3 762 798 303 13 13 chr3L 23304840 23305144 -1238413 - OSVALDO_I LTR Gypsy -5973 680 377 3 762 405 123 0 92 chr3L 23305881 23305979 -1237578 - Gypsy8_I LTR Gypsy -4111 236 148 3 762 1257 116 81 27 chr3L 23305973 23306195 -1237362 - Gypsy8_LTR LTR Gypsy -70 234 1 3 762 756 87 48 0 chr3L 23306198 23306302 -1237255 + DMCR1A LINE CR1 1844 1952 -2518 3 762 8047 67 75 3 chr3L 23306299 23308287 -1235270 + DMCR1A LINE CR1 2340 4470 0 3 762 1065 62 20 20 chr3L 23308290 23308438 -1235119 - G5A_DM LINE Jockey -1366 1475 1328 3 762 263 0 0 0 chr3L 23308435 23308463 -1235094 + DNAREP1_DM LINE Penelope 567 594 0 3 762 255 311 79 49 chr3L 23309496 23309690 -1233867 + HMSBEAGLE_I LTR Gypsy 2720 2919 -3610 3 762 4786 39 81 3 chr3L 23309690 23310346 -1233211 - PROTOP_B DNA P 0 1153 447 3 762 958 90 186 0 chr3L 23310325 23310481 -1233076 - PROTOP_B DNA P -968 185 1 3 762 274 224 47 76 chr3L 23310747 23310884 -1232673 - Gypsy8_LTR LTR Gypsy -60 244 85 3 762 475 312 77 50 chr3L 23311172 23311472 -1232085 + DM1731_I LTR Copia 2701 3008 -968 3 762 1970 171 118 44 chr3L 23313706 23314225 -1229332 + DNAREP1_DM LINE Penelope 1 557 -37 3 762 1139 303 23 23 chr3L 23314225 23314661 -1228896 + Gypsy4_I LTR Gypsy 2317 2752 -3536 3 762 712 299 59 32 chr3L 23314659 23314998 -1228559 + Gypsy4_I LTR Gypsy 3671 4018 -2270 3 762 26 0 0 0 chr3L 23314998 23315024 -1228533 + AT_rich Low_complexity Low_complexity 1 26 0 3 762 875 328 76 36 chr3L 23315032 23316092 -1227465 + Gypsy4_I LTR Gypsy 4371 5473 -815 3 762 236 244 37 49 chr3L 23316204 23316286 -1227271 + Gypsy4_I LTR Gypsy 5779 5859 -429 3 762 528 176 0 0 chr3L 23317067 23317232 -1226325 + (TATATG)n Simple_repeat Simple_repeat 2 166 0 3 762 357 211 0 0 chr3L 23317629 23317714 -1225843 + Jockey2 LINE Jockey 2727 2782 -646 3 762 760 85 39 7 chr3L 23317702 23317808 -1225749 + DNAREP1_DM LINE Penelope 400 491 -103 3 762 764 69 10 0 chr3L 23318168 23318270 -1225287 + DNAREP1_DM LINE Penelope 492 594 0 3 762 24 32 0 0 chr3L 23319109 23319140 -1224417 + AT_rich Low_complexity Low_complexity 1 31 0 3 762 1841 146 85 17 chr3L 23319202 23319640 -1223917 + DNAREP1_DM LINE Penelope 1 594 0 3 762 456 193 16 56 chr3L 23319534 23319660 -1223897 - P_DG DNA P -27 2861 2741 3 762 289 125 17 51 chr3L 23319688 23319747 -1223810 - Transib-N1_DM DNA Transib -452 62 6 3 762 23 0 0 0 chr3L 23320425 23320448 -1223109 + AT_rich Low_complexity Low_complexity 1 23 0 3 762 24 53 0 0 chr3L 23320863 23320901 -1222656 + AT_rich Low_complexity Low_complexity 1 38 0 3 762 1046 221 57 10 chr3L 23322518 23322819 -1220738 + DNAREP1_DM LINE Penelope 1 315 -279 3 762 511 143 0 0 chr3L 23322880 23322957 -1220600 + DNAREP1_DM LINE Penelope 518 594 0 3 762 256 214 129 0 chr3L 23323241 23323311 -1220246 + DNAREP1_DM LINE Penelope 1 79 -515 3 762 495 84 121 0 chr3L 23323308 23323391 -1220166 + DNAREP1_DM LINE Penelope 276 368 -226 3 762 25 90 0 0 chr3L 23324151 23324218 -1219339 + AT_rich Low_complexity Low_complexity 1 67 0 3 762 22 0 0 0 chr3L 23324369 23324391 -1219166 + AT_rich Low_complexity Low_complexity 1 22 0 3 762 1011 101 69 0 chr3L 23324608 23324767 -1218790 + DNAREP1_DM LINE Penelope 1 170 -424 3 762 5889 56 111 21 chr3L 23324763 23326086 -1217471 - DMCR1A LINE CR1 0 4470 3029 3 762 6899 38 6 5 chr3L 23326086 23326917 -1216640 - DMCR1A LINE CR1 -1690 2780 1949 3 762 1802 118 237 3 chr3L 23326939 23327293 -1216264 + DNAREP1_DM LINE Penelope 158 594 0 3 762 425 152 38 12 chr3L 23328053 23328133 -1215424 + MINOS DNA Tc1 13 94 -1681 3 762 352 129 99 14 chr3L 23328149 23328220 -1215337 + MINOS DNA Tc1 808 884 -891 3 762 700 174 360 28 chr3L 23328453 23328736 -1214821 + DNAREP1_DM LINE Penelope 203 579 -15 3 762 996 139 186 5 chr3L 23328738 23328949 -1214608 + DNAREP1_DM LINE Penelope 211 445 -149 3 762 1462 130 43 8 chr3L 23328957 23329212 -1214345 - PROTOP_B DNA P 0 1153 890 3 762 1233 176 50 0 chr3L 23329306 23329610 -1213947 - PROTOP_B DNA P -817 336 78 3 762 273 52 500 25 chr3L 23329617 23329683 -1213874 + DNAREP1_DM LINE Penelope 498 594 0 3 762 880 171 205 46 chr3L 23329822 23330128 -1213429 + DNAREP1_DM LINE Penelope 1 332 -262 3 762 766 38 27 63 chr3L 23330139 23330250 -1213307 + G5A_DM LINE Jockey 2735 2841 0 3 762 286 161 0 16 chr3L 23330275 23330338 -1213219 + DNAREP1_DM LINE Penelope 215 276 -318 3 762 813 128 118 26 chr3L 23330335 23330488 -1213069 + DNAREP1_DM LINE Penelope 427 593 -1 3 762 465 236 0 0 chr3L 23330494 23330604 -1212953 + DNAREP1_DM LINE Penelope 8 117 -477 3 763 22 0 0 0 chr3L 23330852 23330874 -1212683 + AT_rich Low_complexity Low_complexity 1 22 0 3 763 23 0 0 0 chr3L 23331450 23331473 -1212084 + AT_rich Low_complexity Low_complexity 1 23 0 3 763 1656 158 105 19 chr3L 23331546 23332052 -1211505 - DNAREP1_DM LINE Penelope 0 594 2 3 763 1964 131 137 19 chr3L 23332984 23333421 -1210136 - DNAREP1_DM LINE Penelope 0 594 18 3 763 23 86 0 0 chr3L 23333763 23333821 -1209736 + AT_rich Low_complexity Low_complexity 1 58 0 3 763 300 271 104 24 chr3L 23334081 23334206 -1209351 - DNAREP1_DM LINE Penelope -164 430 296 3 763 760 0 87 0 chr3L 23334411 23334526 -1209031 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 3 763 22 35 0 0 chr3L 23334719 23334748 -1208809 + AT_rich Low_complexity Low_complexity 1 29 0 3 763 464 178 0 32 chr3L 23335802 23335881 -1207676 + DNAREP1_DM LINE Penelope 45 120 -474 3 763 1153 171 33 50 chr3L 23335881 23336283 -1207274 + DNAREP1_DM LINE Penelope 1 332 -262 3 763 2555 56 182 8 chr3L 23337198 23337896 -1205661 + PROTOP_B DNA P 1 1073 -80 3 763 2920 119 75 13 chr3L 23338239 23338908 -1204649 + DNAREP1_DM LINE Penelope 1 594 0 3 763 620 353 51 19 chr3L 23339216 23339747 -1203810 - MAX_I LTR Pao -1336 6578 6031 3 763 2619 46 21 0 chr3L 23340423 23340749 -1202808 + DMCR1A LINE CR1 2083 2415 -2055 3 763 347 188 0 0 chr3L 23341206 23341275 -1202282 + Invader3_LTR LTR Gypsy 75 143 -155 3 763 7090 41 58 0 chr3L 23341292 23342312 -1201245 + DMCR1A LINE CR1 2400 3478 -992 3 763 4287 101 36 14 chr3L 23342317 23342948 -1200609 - NINJA_I LTR Pao -213 5798 5154 3 763 2560 84 237 3 chr3L 23342946 23343317 -1200240 - NINJA_I LTR Pao -561 5450 4993 3 763 4772 102 143 0 chr3L 23343315 23344041 -1199516 - NINJA_I LTR Pao -2297 3714 2885 3 763 7130 129 130 5 chr3L 23344037 23345441 -1198116 - NINJA_I LTR Pao -3293 2718 1081 3 763 314 301 88 44 chr3L 23345455 23345636 -1197921 - MAX_I LTR Pao -3266 4648 4460 3 763 415 303 150 13 chr3L 23345718 23345952 -1197605 - MAX_I LTR Pao -3639 4275 4002 3 763 271 264 99 0 chr3L 23346118 23346209 -1197348 - MAX_I LTR Pao -4245 3669 3570 3 763 536 317 62 8 chr3L 23346651 23346893 -1196664 - BATUMI_I LTR Pao -5478 2485 2231 3 763 244 62 35 70 chr3L 23347336 23347422 -1196135 + (TTA)n Simple_repeat Simple_repeat 2 84 0 3 763 3272 8 0 0 chr3L 23347798 23348151 -1195406 + Gypsy2_LTR LTR Gypsy 1 353 0 3 763 33887 1 0 0 chr3L 23348160 23351836 -1191721 - FW_DM LINE Jockey 0 4692 1017 3 763 30168 98 38 34 chr3L 23351881 23358681 -1184876 + Gypsy2_I LTR Gypsy 1 6126 -9 3 763 3233 8 3 0 chr3L 23358682 23359034 -1184523 + Gypsy2_LTR LTR Gypsy 1 353 0 3 763 31560 7 0 0 chr3L 23359197 23362662 -1180895 + FW_DM LINE Jockey 1228 4692 0 3 763 944 63 16 0 chr3L 23362671 23362798 -1180759 + FB4_DM DNA Tc1 1106 1234 -2855 3 763 326 73 0 0 chr3L 23362796 23362837 -1180720 + FB4_DM DNA Tc1 2720 2760 -1329 3 763 12224 97 4 1 chr3L 23362937 23364666 -1178891 - S_DM DNA Tc1 0 1736 3 3 763 2644 89 94 3 chr3L 23364763 23365147 -1178410 - Gypsy6A_LTR LTR Gypsy 0 420 2 3 763 315 302 12 2 chr3L 23365148 23365253 -1178304 - Gypsy6_I LTR Gypsy 0 6177 6100 3 763 27 0 0 0 chr3L 23365276 23365303 -1178254 + AT_rich Low_complexity Low_complexity 1 27 0 3 763 4792 4 0 0 chr3L 23365306 23365824 -1177733 + NOMAD_LTR LTR Gypsy 1 518 0 3 763 61441 1 0 2 chr3L 23365824 23372408 -1171149 + NOMAD_I LTR Gypsy 1 6572 0 3 763 3739 5 0 0 chr3L 23372408 23372813 -1170744 + NOMAD_LTR LTR Gypsy 114 518 0 3 763 1634 322 4 6 chr3L 23372826 23373376 -1170181 - Gypsy6_I LTR Gypsy -172 6840 6292 3 763 1517 241 128 0 chr3L 23373459 23373858 -1169699 - Gypsy2_I LTR Gypsy -2491 4521 4072 3 763 1012 245 5 0 chr3L 23373862 23374070 -1169487 - Gypsy3_I LTR Gypsy -2866 3311 3103 3 763 3301 264 37 5 chr3L 23374067 23375161 -1168396 - Gypsy2_I LTR Gypsy -4148 2864 1715 3 763 273 306 36 29 chr3L 23375213 23375351 -1168206 - ROOA_I LTR Pao -2155 4694 4556 3 763 41 0 0 0 chr3L 23375441 23375482 -1168075 + AT_rich Low_complexity Low_complexity 1 41 0 3 763 297 54 0 0 chr3L 23375753 23375790 -1167767 - PROTOP_B DNA P -226 927 891 3 763 2374 50 0 0 chr3L 23375787 23376086 -1167471 + DOC3_DM LINE Jockey 509 807 -3933 3 763 312 41 204 0 chr3L 23376086 23376135 -1167422 + DOC3_DM LINE Jockey 978 1036 -3704 3 763 5772 39 68 6 chr3L 23376124 23377130 -1166427 + DOC3_DM LINE Jockey 1201 2269 -2471 3 763 1472 49 60 0 chr3L 23377891 23378076 -1165481 - PROTOP_B DNA P -957 196 1 3 763 1410 74 0 26 chr3L 23378076 23378269 -1165288 - Invader5_LTR LTR Gypsy -164 188 1 3 763 4792 4 0 0 chr3L 23378273 23378791 -1164766 - NOMAD_LTR LTR Gypsy 0 518 1 3 763 61437 1 0 2 chr3L 23378791 23385373 -1158184 - NOMAD_I LTR Gypsy 0 6572 1 3 763 4792 6 1 0 chr3L 23385373 23385905 -1157652 - NOMAD_LTR LTR Gypsy 0 518 1 3 763 54 0 0 0 chr3L 23385905 23385959 -1157598 + AT_rich Low_complexity Low_complexity 1 54 0 3 763 29 17 0 79 chr3L 23386101 23386164 -1157393 + AT_rich Low_complexity Low_complexity 1 58 0 3 763 34 65 0 32 chr3L 23386248 23386343 -1157214 + AT_rich Low_complexity Low_complexity 1 92 0 3 763 819 234 119 136 chr3L 23387285 23387889 -1155668 - DNAREP1_DM LINE Penelope 0 594 1 3 763 361 304 23 18 chr3L 23388040 23388211 -1155346 - Gypsy4_I LTR Gypsy -3647 2641 2470 3 763 424 230 162 16 chr3L 23388295 23388543 -1155014 - DNAREP1_DM LINE Penelope -301 293 10 3 763 24 0 0 0 chr3L 23389085 23389109 -1154448 + AT_rich Low_complexity Low_complexity 1 24 0 3 763 1922 241 119 17 chr3L 23389163 23389888 -1153669 - FW_DM LINE Jockey -10 4682 3951 3 763 656 256 245 19 chr3L 23389895 23390209 -1153348 - FW_DM LINE Jockey -1328 3364 2980 3 763 2073 257 60 30 chr3L 23390276 23390941 -1152616 - FW_DM LINE Jockey -3229 1463 779 3 763 2354 46 0 0 chr3L 23391049 23391333 -1152224 + STALKER4_LTR LTR Gypsy 30 313 -89 3 763 4633 162 69 32 chr3L 23391415 23392399 -1151158 - DMRT1B LINE R1 -1137 4046 3027 3 763 1867 145 77 21 chr3L 23392403 23392740 -1150817 - DMRT1B LINE R1 -2602 2581 2226 3 763 1431 115 57 4 chr3L 23392740 23392984 -1150573 - DMRT1B LINE R1 -4005 1178 922 3 763 2042 84 40 0 chr3L 23392984 23393257 -1150300 + R1_DM LINE R1 5035 5318 -38 3 763 247 280 53 21 chr3L 23393411 23393506 -1150051 - FW_DM LINE Jockey -4386 306 209 3 763 359 178 130 9 chr3L 23393742 23393850 -1149707 - DNAREP1_DM LINE Penelope -356 238 118 3 763 564 43 0 0 chr3L 23393847 23393917 -1149640 + DNAREP1_DM LINE Penelope 487 556 -38 3 763 28 0 0 0 chr3L 23393999 23394027 -1149530 + AT_rich Low_complexity Low_complexity 1 28 0 3 763 2248 168 98 6 chr3L 23395724 23396191 -1147366 - DMCR1A LINE CR1 -1667 2803 2294 3 763 469 125 125 0 chr3L 23396226 23396306 -1147251 - STALKER4_LTR LTR Gypsy -41 361 272 3 763 10719 44 17 11 chr3L 23396316 23397635 -1145922 - DMCR1A LINE CR1 0 4470 3143 3 763 2051 60 0 29 chr3L 23397639 23397914 -1145643 - STALKER4_LTR LTR Gypsy -124 278 12 3 763 603 106 0 0 chr3L 23397953 23398028 -1145529 + QUASIMODO_LTR LTR Gypsy 570 644 -14 3 763 7789 51 20 19 chr3L 23398028 23399031 -1144526 + QUASIMODO_I LTR Gypsy 2 1005 -5055 3 763 729 99 0 59 chr3L 23399039 23399157 -1144400 + QUASIMODO_I LTR Gypsy 1182 1292 -4768 3 763 8010 72 28 9 chr3L 23399158 23400561 -1142996 + QUASIMODO_I LTR Gypsy 2380 3906 -2057 3 763 2237 16 0 4 chr3L 23400566 23400818 -1142739 + DIVER2_LTR LTR Pao 135 385 0 3 763 3636 52 0 0 chr3L 23400818 23401257 -1142300 + DIVER2_I LTR Pao 1 439 -3708 3 763 5067 31 56 0 chr3L 23401469 23402078 -1141479 + DIVER2_I LTR Pao 434 1076 -3071 3 763 8048 37 28 11 chr3L 23402081 23403082 -1140475 + DIVER2_I LTR Pao 1577 2594 -1553 3 763 4152 25 25 0 chr3L 23403079 23403558 -1139999 + DIVER2_I LTR Pao 3139 3629 -518 3 763 5437 36 39 25 chr3L 23403558 23404782 -1138775 + PROTOP DNA P 1 1105 0 3 763 4631 21 0 0 chr3L 23404782 23405307 -1138250 + DIVER2_I LTR Pao 3623 4147 0 3 763 3470 16 0 3 chr3L 23405307 23405693 -1137864 + DIVER2_LTR LTR Pao 1 385 0 3 763 3541 57 2 2 chr3L 23405693 23406132 -1137425 + DIVER2_I LTR Pao 1 439 -3708 3 763 2805 31 96 3 chr3L 23406344 23406698 -1136859 + DIVER2_I LTR Pao 434 820 -3327 3 763 19177 31 36 16 chr3L 23406678 23409042 -1134515 + DIVER2_I LTR Pao 1220 3629 -518 3 763 4467 23 14 0 chr3L 23409042 23409560 -1133997 + PROTOP_A DNA P 1 525 -580 3 763 2778 31 0 0 chr3L 23409558 23409911 -1133646 + QUASIMODO_I LTR Gypsy 5262 5614 -446 3 763 1303 107 0 100 chr3L 23409911 23410160 -1133397 + DIVER_LTR LTR Pao 1 224 0 3 763 2792 53 97 0 chr3L 23410180 23410591 -1132966 + QUASIMODO_I LTR Gypsy 5609 6059 -1 3 763 2465 123 35 53 chr3L 23410620 23411127 -1132430 + QUASIMODO_LTR LTR Gypsy 29 657 -1 3 763 926 84 20 66 chr3L 23411427 23411579 -1131978 + Invader1_LTR LTR Gypsy 1 145 -278 3 763 1039 147 23 6 chr3L 23411582 23411753 -1131804 + Invader1_LTR LTR Gypsy 250 423 0 3 763 312 273 31 47 chr3L 23411753 23411880 -1131677 + MICROPIA_I LTR Gypsy 1 125 -4351 3 763 1293 321 40 35 chr3L 23411972 23412808 -1130749 + MICROPIA_I LTR Gypsy 955 1794 -2682 3 763 646 295 41 41 chr3L 23412875 23413168 -1130389 + Invader6_I LTR Gypsy 2062 2354 -1745 3 763 923 329 14 20 chr3L 23413163 23413660 -1129897 + MICROPIA_I LTR Gypsy 3487 3980 -496 3 763 28 0 0 0 chr3L 23413953 23413981 -1129576 + AT_rich Low_complexity Low_complexity 1 28 0 3 763 2684 102 69 5 chr3L 23414164 23414599 -1128958 + Invader1_I LTR Gypsy 2724 3186 0 3 763 2217 132 69 15 chr3L 23414631 23415022 -1128535 + Invader1_LTR LTR Gypsy 12 423 0 3 763 32389 36 9 3 chr3L 23415042 23418949 -1124608 - STALKER4_I LTR Gypsy -298 6232 2305 3 763 1089 90 0 0 chr3L 23419082 23419227 -1124330 + DMRT1C LINE R1 3314 3458 -1985 3 763 273 287 50 50 chr3L 23419977 23420098 -1123459 + DIVER2_I LTR Pao 3638 3758 -389 3 763 643 169 176 0 chr3L 23421591 23421739 -1121818 - I_DM LINE I -1581 4650 4477 3 763 710 95 133 0 chr3L 23421747 23421852 -1121705 - DNAREP1_DM LINE Penelope -39 555 437 3 763 477 50 0 0 chr3L 23421850 23421910 -1121647 - DNAREP1_DM LINE Penelope -534 60 1 3 763 308 222 12 36 chr3L 23421910 23421994 -1121563 - I_DM LINE I -3344 2887 2806 3 763 1770 136 7 4 chr3L 23422281 23422562 -1120995 - Invader4_LTR LTR Gypsy 0 346 65 3 763 227 37 0 0 chr3L 23422584 23422611 -1120946 + QUASIMODO_LTR LTR Gypsy 1 27 -631 3 763 201 74 0 0 chr3L 23422617 23422644 -1120913 + (CA)n Simple_repeat Simple_repeat 2 28 0 3 763 5597 122 66 47 chr3L 23422655 23423840 -1119717 + DMRT1C LINE R1 952 2158 -3285 3 763 4714 92 97 0 chr3L 23423836 23424534 -1119023 + DMRT1C LINE R1 2792 3557 -1886 3 763 1327 71 6 0 chr3L 23424535 23424705 -1118852 + DMRT1C LINE R1 4005 4175 -1268 3 763 1129 81 0 0 chr3L 23424708 23424857 -1118700 + DMRT1C LINE R1 4711 4859 -584 3 763 2136 67 63 3 chr3L 23424856 23425155 -1118402 + DMRT1C LINE R1 5064 5380 -63 3 763 691 111 0 0 chr3L 23425161 23425260 -1118297 - DMRT1C LINE R1 -2042 3401 3303 3 763 642 14 0 0 chr3L 23425260 23425332 -1118225 + DOC5_DM LINE Jockey 2502 2573 -2109 3 763 10307 47 136 6 chr3L 23425370 23426898 -1116659 + DOC5_DM LINE Jockey 2813 4541 -141 3 763 29 0 0 0 chr3L 23426914 23426943 -1116614 + AT_rich Low_complexity Low_complexity 1 29 0 3 763 4667 63 122 9 chr3L 23427848 23428629 -1114928 + BS3_DM LINE Jockey 922 1790 0 3 763 1557 141 174 39 chr3L 23428738 23429225 -1114332 - DNAREP1_DM LINE Penelope 0 594 2 3 763 21 71 0 0 chr3L 23429298 23429340 -1114217 + AT_rich Low_complexity Low_complexity 1 42 0 3 763 249 250 79 10 chr3L 23429614 23429686 -1113871 - ZAM_LTR LTR Gypsy 0 472 394 3 763 1244 184 52 31 chr3L 23429686 23429972 -1113585 - ZAM_LTR LTR Gypsy 0 472 181 3 763 348 224 26 26 chr3L 23430280 23430358 -1113199 + POGO DNA Pogo 789 866 -1255 3 763 1058 146 33 102 chr3L 23430789 23431033 -1112524 + DMLTR5 LTR Gypsy 40 266 0 3 763 2086 103 61 20 chr3L 23431032 23431377 -1112180 + HMSBEAGLE_I LTR Gypsy 1 359 -6170 3 763 31 44 0 0 chr3L 23431392 23431437 -1112120 + AT_rich Low_complexity Low_complexity 1 45 0 3 763 30714 142 3 8 chr3L 23431599 23436264 -1107293 + HMSBEAGLE_I LTR Gypsy 1212 5850 -679 3 763 1852 204 42 104 chr3L 23436589 23437185 -1106372 + HMSBEAGLE_I LTR Gypsy 5810 6368 -161 3 763 356 143 27 67 chr3L 23437419 23437494 -1106063 + HMSBEAGLE_I LTR Gypsy 6334 6405 -124 3 763 864 135 0 0 chr3L 23437592 23437718 -1105839 + HMSBEAGLE_I LTR Gypsy 6404 6529 0 3 763 1060 183 36 18 chr3L 23437806 23438029 -1105528 + DMLTR5 LTR Gypsy 40 266 0 3 763 319 260 0 9 chr3L 23438165 23438270 -1105287 - Gypsy5_I LTR Gypsy -874 5635 5532 3 763 342 297 13 26 chr3L 23438541 23438693 -1104864 - Gypsy5_I LTR Gypsy -5458 1051 902 3 763 280 341 40 43 chr3L 23438912 23439212 -1104345 + POGO DNA Pogo 990 1288 -833 3 763 31 82 0 0 chr3L 23439909 23439982 -1103575 + AT_rich Low_complexity Low_complexity 1 73 0 3 763 520 268 0 0 chr3L 23439982 23440120 -1103437 - IDEFIX_I LTR Gypsy -5172 456 319 3 763 253 218 270 9 chr3L 23440119 23440230 -1103327 - IDEFIX_I LTR Gypsy -5470 158 19 3 763 21 36 0 0 chr3L 23440498 23440526 -1103031 + AT_rich Low_complexity Low_complexity 1 28 0 3 763 429 217 242 0 chr3L 23440677 23440838 -1102719 - IDEFIX_LTR LTR Gypsy -3 591 392 3 763 295 221 232 33 chr3L 23440861 23441137 -1102420 - IDEFIX_LTR LTR Gypsy -263 331 1 3 763 21 0 0 0 chr3L 23441983 23442004 -1101553 + AT_rich Low_complexity Low_complexity 1 21 0 3 763 1064 146 290 62 chr3L 23442059 23442366 -1101191 - DNAREP1_DM LINE Penelope -1 593 217 3 763 189 0 0 0 chr3L 23444407 23444428 -1099129 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 3 763 260 312 80 0 chr3L 23444562 23444674 -1098883 + G_DM LINE Jockey 2995 3115 -1231 3 763 3243 37 5 0 chr3L 23446629 23447012 -1096545 - ROOA_LTR LTR Pao -1 385 1 3 763 443 301 75 12 chr3L 23447057 23447309 -1096248 + OSVALDO_I LTR Gypsy 1849 2116 -4537 3 763 302 340 71 21 chr3L 23447455 23447695 -1095862 + OSVALDO_I LTR Gypsy 2328 2579 -4074 3 763 428 331 0 11 chr3L 23447918 23448101 -1095456 + OSVALDO_I LTR Gypsy 2928 3108 -3545 3 763 399 346 16 16 chr3L 23448551 23448795 -1094762 - Ulysses_I LTR Gypsy -3960 2421 2178 3 763 1361 155 96 18 chr3L 23450070 23450421 -1093136 + PROTOP_A DNA P 735 1103 -2 3 763 1259 163 71 0 chr3L 23451264 23451503 -1092054 + DMCR1A LINE CR1 876 1131 -3339 3 763 989 216 141 73 chr3L 23451583 23452030 -1091527 + DMCR1A LINE CR1 1361 1838 -2632 3 763 370 218 0 0 chr3L 23452022 23452100 -1091457 + DMCR1A LINE CR1 2395 2472 -1998 3 763 2237 141 128 58 chr3L 23452120 23452859 -1090698 - Gypsy8_I LTR Gypsy -3311 1036 230 3 763 410 217 0 70 chr3L 23453548 23453677 -1089880 - Gypsy8_I LTR Gypsy -4118 229 110 3 763 36372 24 14 0 chr3L 23453682 23457907 -1085650 - DMRT1A LINE R1 -423 4760 478 3 763 6354 22 1 6 chr3L 23457916 23458647 -1084910 - DMRT1A LINE R1 0 5183 4456 3 763 195 42 0 0 chr3L 23458647 23458671 -1084886 + (TTGTG)n Simple_repeat Simple_repeat 4 27 0 3 763 2387 99 0 30 chr3L 23458692 23459056 -1084501 + Mariner2_DM DNA Tc1 560 912 0 3 763 1368 221 274 3 chr3L 23459056 23459805 -1083752 - LINEJ1_DM LINE Jockey -3936 1084 133 3 763 3663 135 123 12 chr3L 23459837 23460511 -1083046 + DMCR1A LINE CR1 3329 4077 -393 3 763 402 376 16 20 chr3L 23460622 23461075 -1082482 + FW_DM LINE Jockey 2494 2944 -1748 3 763 604 99 0 42 chr3L 23461482 23461577 -1081980 + G3_DM LINE Jockey 3 93 -4512 3 764 689 326 38 100 chr3L 23462666 23462705 -1080852 + DIVER2_I LTR Pao 1051 1140 -3007 3 764 2828 126 33 42 chr3L 23462705 23463186 -1080371 + G3_DM LINE Jockey 103 579 -4026 3 764 689 326 38 100 chr3L 23463186 23463464 -1080093 + DIVER2_I LTR Pao 1141 1798 -2349 3 764 580 49 37 0 chr3L 23463839 23463921 -1079636 + TRANSIB1 DNA Transib 2930 3014 0 3 764 1666 51 0 0 chr3L 23463937 23464134 -1079423 - PROTOP DNA P 0 4480 4284 3 764 3909 125 48 35 chr3L 23464130 23464820 -1078737 + STALKER4_I LTR Gypsy 2295 2993 -3537 3 764 29 28 0 0 chr3L 23464941 23464977 -1078580 + AT_rich Low_complexity Low_complexity 1 36 0 3 764 4754 196 37 69 chr3L 23464989 23466103 -1077454 + Gypsy3_I LTR Gypsy 173 1250 -4927 3 764 4619 204 70 41 chr3L 23466119 23468722 -1074835 + Gypsy3_I LTR Gypsy 1715 5047 -1965 3 764 3853 200 28 65 chr3L 23468717 23469577 -1073980 + Gypsy3_I LTR Gypsy 4989 5816 -361 3 764 5138 109 70 15 chr3L 23469574 23470443 -1073114 + STALKER4_I LTR Gypsy 5443 6359 -171 3 764 2955 132 78 0 chr3L 23470487 23470986 -1072571 + DMRT1B LINE R1 230 767 -4416 3 764 1549 146 50 0 chr3L 23470983 23471244 -1072313 + DMRT1B LINE R1 1461 1734 -3449 3 764 3301 129 97 0 chr3L 23471245 23471781 -1071776 + DMRT1B LINE R1 1872 2459 -2724 3 764 10394 127 117 22 chr3L 23471780 23473753 -1069804 + DMRT1B LINE R1 3019 5179 -4 3 764 330 160 30 98 chr3L 23473747 23473879 -1069678 + STALKER4_I LTR Gypsy 6408 6530 0 3 764 1051 333 75 10 chr3L 23473947 23474550 -1069007 + DIVER2_I LTR Pao 3401 4042 -105 3 764 632 294 47 18 chr3L 23475138 23475415 -1068142 + DOC3_DM LINE Jockey 3088 3372 -1368 3 764 16057 58 33 1 chr3L 23475401 23477421 -1066136 - DMCR1A LINE CR1 0 4470 2386 3 764 465 69 0 0 chr3L 23477421 23477479 -1066078 - DMCR1A LINE CR1 -2221 2249 2192 3 764 3604 34 10 0 chr3L 23477478 23477894 -1065663 - DMCR1A LINE CR1 -2777 1693 1274 3 764 451 137 0 0 chr3L 23477918 23477991 -1065566 - PROTOP DNA P -3399 1081 1009 3 764 4069 91 109 0 chr3L 23478003 23478627 -1064930 - PROTOP DNA P -3788 692 1 3 764 515 193 0 18 chr3L 23478627 23478738 -1064819 + G_DM LINE Jockey 4151 4259 -87 3 764 604 248 71 55 chr3L 23479358 23479594 -1063963 - Invader3_I LTR Gypsy -231 4657 4449 3 764 883 75 202 22 chr3L 23479685 23479913 -1063644 + Gypsy12A_LTR LTR Gypsy 2012 2280 0 3 764 518 274 84 25 chr3L 23479913 23480092 -1063465 - Invader3_I LTR Gypsy -1291 3597 3407 3 764 806 173 129 8 chr3L 23480085 23480471 -1063086 - DNAREP1_DM LINE Penelope -262 332 101 3 764 1812 92 52 5 chr3L 23480509 23480827 -1062730 + DNAREP1_DM LINE Penelope 201 565 -29 3 764 743 316 4 12 chr3L 23480952 23481208 -1062349 - BEL_I LTR Pao -449 4955 4702 3 764 282 269 51 51 chr3L 23481216 23481314 -1062243 - BEL_I LTR Pao -1350 4054 3957 3 764 8451 33 33 29 chr3L 23481365 23482466 -1061091 + PROTOP_A DNA P 1 1105 0 3 764 648 123 17 42 chr3L 23482769 23482888 -1060669 + DNAREP1_DM LINE Penelope 479 594 0 3 764 342 203 0 0 chr3L 23482885 23482949 -1060608 + DM412 LTR Gypsy 6736 6799 -98 3 764 1878 129 170 12 chr3L 23482990 23483503 -1060054 + DNAREP1_DM LINE Penelope 1 594 0 3 764 21 0 0 0 chr3L 23484283 23484304 -1059253 + AT_rich Low_complexity Low_complexity 1 21 0 3 764 278 107 83 67 chr3L 23484601 23484661 -1058896 + DNAREP1_DM LINE Penelope 129 189 -405 3 764 386 62 0 0 chr3L 23485009 23485057 -1058500 + DNAREP1_DM LINE Penelope 541 588 -6 3 764 220 37 93 0 chr3L 23485057 23485111 -1058446 + (TA)n Simple_repeat Simple_repeat 2 60 0 3 764 523 162 48 14 chr3L 23485254 23485400 -1058157 - DNAREP1_DM LINE Penelope -278 316 129 3 764 868 169 127 37 chr3L 23485370 23485885 -1057672 - DNAREP1_DM LINE Penelope -264 330 1 3 764 753 192 108 29 chr3L 23485895 23486099 -1057458 - DNAREP1_DM LINE Penelope 0 594 375 3 764 2370 79 70 3 chr3L 23486122 23486466 -1057091 + Gypsy12A_LTR LTR Gypsy 30 396 -1884 3 764 1655 87 11 49 chr3L 23486472 23486737 -1056820 + Gypsy12A_LTR LTR Gypsy 1035 1289 -991 3 764 2856 66 29 5 chr3L 23486812 23487193 -1056364 + Gypsy12A_LTR LTR Gypsy 1890 2279 -1 3 764 410 55 0 0 chr3L 23487193 23487246 -1056311 + Gypsy12A_LTR LTR Gypsy 2228 2280 0 3 764 1578 128 94 3 chr3L 23487246 23487537 -1056020 - DNAREP1_DM LINE Penelope -229 365 48 3 764 266 155 56 56 chr3L 23487816 23487834 -1055723 + P_DG DNA P 2740 2757 -131 3 764 477 140 319 0 chr3L 23487834 23487945 -1055612 - DNAREP1_DM LINE Penelope 0 594 448 3 764 9126 28 20 4 chr3L 23487945 23489031 -1054526 - PROTOP_A DNA P 0 1105 2 3 764 997 116 188 94 chr3L 23489102 23489358 -1054199 - DNAREP1_DM LINE Penelope -313 281 2 3 764 24 32 0 0 chr3L 23489450 23489481 -1054076 + AT_rich Low_complexity Low_complexity 1 31 0 3 764 3378 48 4 14 chr3L 23489833 23490271 -1053286 + STALKER4_LTR LTR Gypsy 1 399 -3 3 764 28 48 0 0 chr3L 23490359 23490401 -1053156 + AT_rich Low_complexity Low_complexity 1 42 0 3 764 12164 65 63 18 chr3L 23490408 23492281 -1051276 + STALKER4_I LTR Gypsy 291 2296 -4234 3 764 33669 17 10 2 chr3L 23492287 23496191 -1047366 + STALKER4_I LTR Gypsy 2596 6530 0 3 764 2889 69 59 15 chr3L 23496191 23496606 -1046951 + STALKER4_LTR LTR Gypsy 1 399 -3 3 764 27 62 0 0 chr3L 23497094 23497142 -1046415 + AT_rich Low_complexity Low_complexity 1 48 0 3 764 2921 112 21 43 chr3L 23497168 23497652 -1045905 - HMSBEAGLE_I LTR Gypsy -425 6104 5632 3 764 2598 73 63 63 chr3L 23497702 23498112 -1045445 - HMSBEAGLE_I LTR Gypsy -1079 5450 5041 3 764 15315 46 44 3 chr3L 23498110 23500000 -1043557 + Baggins1 LINE LOA 2236 4204 -1249 3 764 1039 70 0 7 chr3L 23500000 23500145 -1043412 + Baggins1 LINE LOA 4205 4348 -1105 3 764 3307 42 107 0 chr3L 23500133 23500974 -1042583 + Baggins1 LINE LOA 4524 5453 0 3 764 5919 100 224 4 chr3L 23500983 23502931 -1040626 - HMSBEAGLE_I LTR Gypsy -1475 5054 2678 3 764 4939 117 148 21 chr3L 23502950 23504075 -1039482 - HMSBEAGLE_I LTR Gypsy -4244 2285 974 3 764 230 143 0 113 chr3L 23504120 23504191 -1039366 - HMSBEAGLE_I LTR Gypsy -5759 770 708 3 764 211 208 0 0 chr3L 23504191 23504239 -1039318 + (TTG)n Simple_repeat Simple_repeat 2 49 0 3 764 1069 135 107 116 chr3L 23504439 23504757 -1038800 - HMSBEAGLE_I LTR Gypsy -6040 489 175 3 764 1355 12 71 0 chr3L 23504728 23504897 -1038660 - G4_DM LINE Jockey -2409 1447 1267 3 764 1180 16 473 0 chr3L 23504898 23505086 -1038471 - G4_DM LINE Jockey -3101 755 479 3 764 1727 53 12 0 chr3L 23505079 23505325 -1038232 - G4_DM LINE Jockey -3524 332 84 3 764 673 296 41 51 chr3L 23505789 23506265 -1037292 - DM297_I LTR Gypsy -2912 3508 2787 3 764 1139 77 34 10 chr3L 23506265 23506474 -1037083 - TLD2 Unknown Unknown 0 218 5 3 764 673 296 41 51 chr3L 23506474 23506757 -1036800 - DM297_I LTR Gypsy -2912 2786 2354 3 764 44 0 0 0 chr3L 23507756 23507800 -1035757 + AT_rich Low_complexity Low_complexity 1 44 0 3 764 228 35 0 0 chr3L 23508433 23508462 -1035095 - Gypsy10_LTR LTR Gypsy -335 29 1 3 764 18046 83 31 37 chr3L 23508480 23511468 -1032089 - BATUMI_I LTR Pao -679 7284 4315 3 764 27632 64 29 50 chr3L 23511618 23516030 -1027527 - BATUMI_I LTR Pao -3642 4321 1 3 764 2030 35 3 31 chr3L 23516030 23516321 -1027236 - BATUMI_I LTR Pao -679 7284 7002 3 764 442 56 0 112 chr3L 23516320 23516400 -1027157 - Gypsy10_I LTR Gypsy -12 5266 5196 3 764 4066 83 56 44 chr3L 23516522 23517201 -1026356 - Gypsy10_I LTR Gypsy -99 5179 4493 3 764 22 56 0 0 chr3L 23517343 23517379 -1026178 + AT_rich Low_complexity Low_complexity 1 36 0 3 764 4505 219 51 8 chr3L 23517395 23518877 -1024680 - Gypsy10_I LTR Gypsy -1543 4745 3200 3 764 4580 94 13 14 chr3L 23518877 23519599 -1023958 - Gypsy10_I LTR Gypsy -3502 1776 880 3 764 8794 26 2 6 chr3L 23519623 23520733 -1022824 - PROTOP_A DNA P 0 1105 1 3 764 6367 83 65 29 chr3L 23520738 23521828 -1021729 - Gypsy10_I LTR Gypsy -4206 1072 3 3 764 1372 48 184 0 chr3L 23521830 23522136 -1021421 - Gypsy10_LTR LTR Gypsy 0 364 2 3 764 414 333 47 10 chr3L 23522141 23522438 -1021119 + Copia_I LTR Copia 146 453 -4140 3 764 261 267 9 9 chr3L 23522851 23522957 -1020600 + Copia_I LTR Copia 1448 1553 -3040 3 764 10294 45 77 6 chr3L 23523001 23524706 -1018851 + DMCR1A LINE CR1 1363 3189 -1281 3 764 271 167 0 0 chr3L 23524740 23524794 -1018763 - DMLTR5 LTR Gypsy -212 54 1 3 764 258 283 150 0 chr3L 23525925 23526045 -1017512 + MAX_I LTR Pao 1379 1516 -6398 3 764 691 188 210 0 chr3L 23526122 23526308 -1017249 + MAX_I LTR Pao 1690 1914 -6000 3 764 3091 200 47 30 chr3L 23526305 23527027 -1016530 + MAX_I LTR Pao 2079 2812 -5102 3 764 422 112 197 6 chr3L 23527033 23527171 -1016386 + MAX_I LTR Pao 3390 3592 -4322 3 764 237 143 24 0 chr3L 23527243 23527285 -1016272 + MAX_I LTR Pao 3596 3638 -4276 3 764 770 186 52 0 chr3L 23527303 23527475 -1016082 + MAX_I LTR Pao 4140 4320 -3594 3 764 3521 133 36 2 chr3L 23527489 23528092 -1015465 + MAX_I LTR Pao 4723 5346 -2568 3 764 825 172 45 86 chr3L 23528094 23528316 -1015241 - ACCORD2_LTR LTR Gypsy -2 213 1 3 764 1061 199 189 0 chr3L 23528316 23528602 -1014955 + MAX_I LTR Pao 5343 5682 -2232 3 764 518 315 11 0 chr3L 23528842 23529023 -1014534 - OSVALDO_I LTR Gypsy -5962 691 509 3 764 1094 145 136 0 chr3L 23530735 23530956 -1012601 + DMCR1A LINE CR1 475 725 -3745 3 764 269 239 0 0 chr3L 23530962 23531029 -1012528 + DMCR1A LINE CR1 1051 1117 -3353 3 764 717 186 12 0 chr3L 23531425 23531586 -1011971 + DMCR1A LINE CR1 1250 1412 -3058 3 764 2365 153 53 10 chr3L 23531587 23532075 -1011482 + DMCR1A LINE CR1 2262 2770 -1700 3 764 941 299 41 41 chr3L 23532803 23533239 -1010318 - DIVER2_I LTR Pao -2 4145 3710 3 764 269 227 0 15 chr3L 23533888 23533955 -1009602 - DIVER2_I LTR Pao -2313 1834 1769 3 764 23 54 0 0 chr3L 23534236 23534273 -1009284 + AT_rich Low_complexity Low_complexity 1 37 0 3 764 27 29 0 0 chr3L 23534722 23534756 -1008801 + AT_rich Low_complexity Low_complexity 1 34 0 3 764 935 149 106 9 chr3L 23534977 23535194 -1008363 - DNAREP1_DM LINE Penelope -142 452 215 3 764 226 319 0 11 chr3L 23536199 23536291 -1007266 - TV1I LTR Gypsy -4999 964 874 3 764 1915 122 109 39 chr3L 23536603 23537100 -1006457 - DNAREP1_DM LINE Penelope 0 594 86 3 764 329 174 0 0 chr3L 23537208 23537277 -1006280 - ROO_I LTR Pao -2371 5885 5817 3 764 682 246 232 7 chr3L 23537305 23537719 -1005838 - TABOR_I LTR Gypsy -509 5827 5321 3 764 550 191 304 40 chr3L 23538245 23538596 -1004961 - Stalker2_I LTR Gypsy -2003 5399 5145 3 764 2437 256 112 8 chr3L 23538626 23539533 -1004024 - TABOR_I LTR Gypsy -2179 4157 3156 3 764 699 190 97 154 chr3L 23539555 23539977 -1003580 + Gypsy3_LTR LTR Gypsy 1 398 0 3 764 269 224 56 79 chr3L 23540802 23540928 -1002629 - Stalker2_I LTR Gypsy -5524 1878 1756 3 764 286 270 18 9 chr3L 23540919 23541031 -1002526 - MDG1_I LTR Gypsy -5161 1435 1323 3 764 958 103 267 42 chr3L 23541341 23541771 -1001786 - DNAREP1_DM LINE Penelope 0 594 1 3 764 459 299 88 3 chr3L 23541752 23542058 -1001499 - Copia_I LTR Copia -461 4132 3801 3 764 833 278 62 19 chr3L 23542153 23542720 -1000837 - Copia_I LTR Copia -2405 2188 1563 3 764 2725 11 132 16 chr3L 23543366 23543745 -999812 - Invader1_LTR LTR Gypsy 0 423 1 3 764 5430 9 47 0 chr3L 23543745 23544404 -999153 - Invader1_I LTR Gypsy 0 3186 2497 3 764 10968 128 25 15 chr3L 23544403 23546470 -997087 - Invader1_I LTR Gypsy -2018 2081 1 3 764 3562 17 2 0 chr3L 23546470 23546892 -996665 - Invader1_LTR LTR Gypsy 0 423 1 3 764 523 216 45 96 chr3L 23547045 23547337 -996220 - FB4_DM DNA Tc1 -1405 2684 2408 3 764 22 0 0 0 chr3L 23547368 23547390 -996167 + AT_rich Low_complexity Low_complexity 1 22 0 3 764 30 27 0 0 chr3L 23547471 23547508 -996049 + AT_rich Low_complexity Low_complexity 1 37 0 3 764 246 370 0 0 chr3L 23548300 23548419 -995138 + DIVER2_I LTR Pao 460 578 -3569 3 764 572 203 7 7 chr3L 23548431 23548570 -994987 - FB4_DM DNA Tc1 -1546 2543 2405 3 764 21 0 0 0 chr3L 23548597 23548618 -994939 + AT_rich Low_complexity Low_complexity 1 21 0 3 764 23 54 0 0 chr3L 23548702 23548739 -994818 + AT_rich Low_complexity Low_complexity 1 37 0 3 764 3505 182 152 13 chr3L 23549390 23550380 -993177 + LINEJ1_DM LINE Jockey 1205 2332 -2688 3 764 10938 45 56 7 chr3L 23550572 23552116 -991441 + TC1-2_DM DNA Tc1 26 1644 0 3 764 643 294 69 11 chr3L 23552405 23552667 -990890 - TIRANT_I LTR Gypsy -3012 4680 4404 3 764 1092 256 78 15 chr3L 23552720 23553120 -990437 - Gypsy5_I LTR Gypsy -3425 3084 2660 3 764 1898 49 4 50 chr3L 23553274 23553554 -990003 - MDG3_LTR LTR Gypsy 0 267 1 3 764 231 307 0 0 chr3L 23554158 23554233 -989324 - ACCORD_I LTR Gypsy -4233 2055 1981 3 764 290 51 0 0 chr3L 23554916 23554955 -988602 + Gypsy9_LTR LTR Gypsy 162 200 -136 3 764 886 111 7 0 chr3L 23554959 23555103 -988454 - BS3_DM LINE Jockey -5 1785 1641 3 764 7118 85 48 0 chr3L 23555128 23556220 -987337 - BS3_DM LINE Jockey -213 1577 584 3 764 822 112 14 0 chr3L 23556219 23556362 -987195 + Gypsy9_LTR LTR Gypsy 192 336 0 3 764 1703 160 111 3 chr3L 23557186 23557561 -985996 + LINEJ1_DM LINE Jockey 2331 2745 -2275 3 764 512 168 10 10 chr3L 23557569 23557671 -985886 + LINEJ1_DM LINE Jockey 3301 3402 -1618 3 764 1460 112 17 23 chr3L 23557661 23557997 -985560 - DNAREP1_DM LINE Penelope -184 410 39 3 764 745 155 110 0 chr3L 23559333 23559486 -984071 + DMCR1A LINE CR1 2866 3035 -1435 3 764 398 162 402 0 chr3L 23559486 23559613 -983944 - DNAREP1_DM LINE Penelope 0 594 417 3 764 245 185 0 0 chr3L 23560863 23560917 -982640 + DNAREP1_DM LINE Penelope 538 591 -3 3 764 35 24 0 0 chr3L 23560965 23561007 -982550 + AT_rich Low_complexity Low_complexity 1 42 0 3 764 649 130 355 24 chr3L 23561021 23561187 -982370 - DNAREP1_DM LINE Penelope -33 561 341 3 764 32 26 0 0 chr3L 23561221 23561260 -982297 + AT_rich Low_complexity Low_complexity 1 39 0 3 764 468 161 0 0 chr3L 23561374 23561461 -982096 - DNAREP1_DM LINE Penelope -507 87 1 3 764 28 0 0 0 chr3L 23563059 23563087 -980470 + AT_rich Low_complexity Low_complexity 1 28 0 3 764 3441 41 24 11 chr3L 23563662 23564130 -979427 - Mariner2_DM DNA Tc1 0 912 439 3 764 1299 44 473 10 chr3L 23564304 23564509 -979048 - Mariner2_DM DNA Tc1 -612 300 1 3 764 1020 65 9 19 chr3L 23564762 23565378 -978179 - RSP Satellite Satellite -45 610 1 3 764 879 83 11 24 chr3L 23565422 23566073 -977484 - RSP Satellite Satellite -4 642 1 3 764 36887 35 19 8 chr3L 23566126 23571153 -972404 - STALKER4_I LTR Gypsy -1108 5422 291 3 764 28 48 0 0 chr3L 23571160 23571202 -972355 + AT_rich Low_complexity Low_complexity 1 42 0 3 764 1718 24 0 5 chr3L 23571276 23571489 -972068 - STALKER4_LTR LTR Gypsy -190 212 1 3 764 21 36 0 0 chr3L 23571779 23571807 -971750 + AT_rich Low_complexity Low_complexity 1 28 0 3 764 229 143 0 0 chr3L 23571807 23571849 -971708 - BARI1 DNA Tc1 -1706 44 3 3 764 4456 46 3 0 chr3L 23571817 23572408 -971149 + IDEFIX_LTR LTR Gypsy 1 593 -1 3 764 275 68 68 0 chr3L 23572408 23572467 -971090 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 764 22 35 0 0 chr3L 23572475 23572504 -971053 + AT_rich Low_complexity Low_complexity 1 29 0 3 764 257 226 75 9 chr3L 23572845 23572952 -970605 - MDG3_I LTR Gypsy -2227 2759 2646 3 764 1622 105 232 2 chr3L 23572944 23573331 -970226 - DNAREP1_DM LINE Penelope -118 476 1 3 764 6244 105 3 10 chr3L 23573999 23574994 -968563 - S_DM DNA Tc1 -20 1716 729 3 764 8691 17 19 4 chr3L 23574994 23576082 -967475 - PROTOP_A DNA P 0 1105 1 3 764 688 47 0 0 chr3L 23576082 23576168 -967389 - S_DM DNA Tc1 -1001 735 650 3 764 23 33 0 0 chr3L 23576205 23576235 -967322 + AT_rich Low_complexity Low_complexity 1 30 0 3 764 629 212 200 17 chr3L 23576745 23576980 -966577 - FW_DM LINE Jockey -1026 3666 3389 3 764 409 203 70 53 chr3L 23577155 23577342 -966215 + DNAREP1_DM LINE Penelope 104 293 -301 3 764 488 90 0 0 chr3L 23577319 23577395 -966162 + DNAREP1_DM LINE Penelope 181 256 -338 3 764 558 96 294 5 chr3L 23577395 23577592 -965965 + DNAREP1_DM LINE Penelope 1 254 -340 3 764 3312 55 82 2 chr3L 23577607 23578095 -965462 - G4_DM LINE Jockey -1 3855 3329 3 764 435 70 0 0 chr3L 23578089 23578146 -965411 - G4_DM LINE Jockey -683 3173 3117 3 764 3850 44 106 11 chr3L 23578128 23578702 -964855 - G4_DM LINE Jockey -903 2953 2325 3 764 609 47 12 0 chr3L 23578700 23578786 -964771 - G4_DM LINE Jockey -1876 1980 1894 3 764 7563 18 60 15 chr3L 23578795 23579926 -963631 - G4_DM LINE Jockey -2195 1661 480 3 764 879 154 36 45 chr3L 23579924 23580235 -963322 + DNAREP1_DM LINE Penelope 84 315 -279 3 764 537 92 194 30 chr3L 23580232 23580366 -963191 + DNAREP1_DM LINE Penelope 231 386 -208 3 764 876 204 295 4 chr3L 23580374 23580849 -962708 + DM412 LTR Gypsy 4035 4647 -2250 3 764 39 50 0 0 chr3L 23580879 23580939 -962618 + AT_rich Low_complexity Low_complexity 1 60 0 3 764 668 148 0 0 chr3L 23581369 23581484 -962073 + DM412 LTR Gypsy 4809 4923 -1974 3 764 461 257 40 7 chr3L 23581478 23581627 -961930 - FW_DM LINE Jockey -1261 3431 3278 3 764 259 200 62 0 chr3L 23581685 23581765 -961792 + Stalker2_I LTR Gypsy 4959 5043 -2359 3 764 22 56 0 0 chr3L 23581782 23581818 -961739 + AT_rich Low_complexity Low_complexity 1 36 0 3 764 449 92 0 0 chr3L 23581862 23581927 -961630 + DOC4_DM LINE Jockey 2727 2791 0 3 764 326 170 67 34 chr3L 23581987 23582120 -961437 + DOC LINE Jockey 4625 4773 -20 3 764 541 105 0 0 chr3L 23582111 23582197 -961360 - DNAREP1_DM LINE Penelope -162 432 347 3 764 378 19 0 0 chr3L 23582403 23582456 -961101 - G4_DM LINE Jockey 0 3856 3804 3 764 1560 137 83 37 chr3L 23582568 23582916 -960641 + PROTOP DNA P 1 364 -4116 3 764 21 36 0 0 chr3L 23583459 23583487 -960070 + AT_rich Low_complexity Low_complexity 1 28 0 3 764 1012 302 13 8 chr3L 23583657 23584044 -959513 - OSVALDO_I LTR Gypsy -4114 2539 2151 3 764 1018 81 393 20 chr3L 23584639 23584939 -958618 + PROTOP_B DNA P 1 412 -741 3 764 21 0 0 0 chr3L 23584986 23585007 -958550 + AT_rich Low_complexity Low_complexity 1 21 0 3 764 39 80 0 0 chr3L 23585041 23585129 -958428 + AT_rich Low_complexity Low_complexity 1 88 0 3 764 433 143 8 0 chr3L 23585139 23585227 -958330 + PROTOP DNA P 4221 4308 -172 3 764 234 0 0 0 chr3L 23587060 23587086 -956471 + (CTAGT)n Simple_repeat Simple_repeat 5 30 0 3 764 583 265 99 45 chr3L 23587220 23587441 -956116 - Gypsy10_LTR LTR Gypsy -107 257 25 3 764 250 98 32 32 chr3L 23587621 23587684 -955873 - DNAREP1_DM LINE Penelope -308 286 224 3 764 1396 221 10 28 chr3L 23587812 23588208 -955349 - Gypsy_LTR LTR Gypsy -92 390 2 3 764 281 351 43 39 chr3L 23588334 23588565 -954992 + G2_DM LINE Jockey 1835 2066 -1036 3 764 4799 207 73 16 chr3L 23588547 23589703 -953854 - Gypsy_I LTR Gypsy -3938 2569 1349 3 764 22 94 0 0 chr3L 23589881 23589945 -953612 + AT_rich Low_complexity Low_complexity 1 64 0 3 764 2234 118 0 3 chr3L 23589945 23590292 -953265 - Invader4_LTR LTR Gypsy 0 346 1 3 764 1193 94 26 119 chr3L 23590292 23590595 -952962 - Invader4_I LTR Gypsy 0 2413 2139 3 764 3732 132 50 81 chr3L 23590632 23591516 -952041 - Invader4_I LTR Gypsy -536 1877 1022 3 764 5720 64 83 3 chr3L 23591660 23592611 -950946 - Invader4_I LTR Gypsy -1386 1027 1 3 764 1195 134 0 5 chr3L 23592611 23592814 -950743 - Invader4_LTR LTR Gypsy 0 346 145 3 765 3378 19 34 0 chr3L 23592995 23593409 -950148 + ROO_LTR LTR Pao 1 428 0 3 765 23 33 0 0 chr3L 23593439 23593469 -950088 + AT_rich Low_complexity Low_complexity 1 30 0 3 765 414 185 261 14 chr3L 23593634 23593870 -949687 - Gypsy_I LTR Gypsy -5466 1041 728 3 765 6980 160 107 23 chr3L 23593853 23595375 -948182 - G_DM LINE Jockey -65 4281 2632 3 765 444 197 102 8 chr3L 23595419 23595537 -948020 - G_DM LINE Jockey -1800 2546 2418 3 765 32 26 0 0 chr3L 23595968 23596007 -947550 + AT_rich Low_complexity Low_complexity 1 39 0 3 765 434 278 56 65 chr3L 23601148 23601471 -942086 - TOM_I LTR Gypsy -1 6111 5792 3 765 2414 229 72 30 chr3L 23601655 23602367 -941190 + G5_DM LINE Jockey 830 1571 -3285 3 765 332 155 0 0 chr3L 23602365 23602423 -941134 + G5A_DM LINE Jockey 111 168 -2673 3 765 1851 112 0 27 chr3L 23602423 23602716 -940841 + G5A_DM LINE Jockey 360 644 -2197 3 765 2667 74 3 0 chr3L 23602746 23603110 -940447 + G5A_DM LINE Jockey 877 1241 -1600 3 765 973 100 279 0 chr3L 23603110 23603394 -940163 + G5A_DM LINE Jockey 1460 1822 -1019 3 765 662 122 0 0 chr3L 23603395 23603502 -940055 + G5A_DM LINE Jockey 1950 2056 -785 3 765 990 99 7 0 chr3L 23603517 23603668 -939889 + G5A_DM LINE Jockey 2312 2463 -378 3 765 1014 122 20 50 chr3L 23603648 23603846 -939711 + G5A_DM LINE Jockey 2640 2831 -10 3 765 2639 30 267 0 chr3L 23604583 23605084 -938473 + Baggins1 LINE LOA 3930 4564 -889 3 765 942 72 224 0 chr3L 23605077 23605336 -938221 + Baggins1 LINE LOA 4731 5047 -406 3 765 253 19 35 53 chr3L 23605361 23605418 -938139 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 3 765 695 41 53 26 chr3L 23605436 23605587 -937970 + (TTATA)n Simple_repeat Simple_repeat 5 159 0 3 765 546 148 40 24 chr3L 23605899 23606024 -937533 + DMTOM1_LTR LTR Gypsy 284 410 0 3 765 382 102 14 28 chr3L 23606024 23606086 -937471 + DMTOM1_LTR LTR Gypsy 349 409 -1 3 765 252 18 105 0 chr3L 23606086 23606143 -937414 + (TA)n Simple_repeat Simple_repeat 2 64 0 3 765 338 212 25 0 chr3L 23606622 23606702 -936855 - R1_DM LINE R1 -4859 497 416 3 765 798 203 232 33 chr3L 23606724 23607060 -936497 - R1_DM LINE R1 -4859 497 95 3 765 975 134 17 12 chr3L 23607058 23607231 -936326 - DNAREP1_DM LINE Penelope -95 499 326 3 765 340 156 154 11 chr3L 23607231 23607322 -936235 - DNAREP1_DM LINE Penelope -466 128 25 3 765 841 152 216 9 chr3L 23608189 23608402 -935155 - DMCR1A LINE CR1 -1797 2673 2417 3 765 276 128 0 157 chr3L 23608533 23608616 -934941 - DMCR1A LINE CR1 -2418 2052 1983 3 765 5053 165 68 2 chr3L 23608781 23609777 -933780 - MAX_I LTR Pao -782 7132 6071 3 765 427 132 118 0 chr3L 23609911 23609985 -933572 - MAX_I LTR Pao -1833 6081 5999 3 765 365 23 0 0 chr3L 23609985 23610029 -933528 - DNAREP1_DM LINE Penelope 0 594 551 3 765 661 145 138 15 chr3L 23610068 23610333 -933224 - DNAREP1_DM LINE Penelope -262 332 89 3 765 1558 217 42 57 chr3L 23610412 23610864 -932693 - DMCR1A LINE CR1 -2653 1817 1373 3 765 591 96 11 0 chr3L 23610864 23610958 -932599 - DNAREP1_DM LINE Penelope 0 594 500 3 765 23 0 0 0 chr3L 23610958 23610981 -932576 + AT_rich Low_complexity Low_complexity 1 23 0 3 765 527 150 80 0 chr3L 23611245 23611345 -932212 + DNAREP1_DM LINE Penelope 1 108 -486 3 765 242 154 0 0 chr3L 23611465 23611517 -932040 + DNAREP1_DM LINE Penelope 198 249 -345 3 765 910 132 36 14 chr3L 23611795 23612071 -931486 - DNAREP1_DM LINE Penelope -274 320 101 3 765 9181 46 33 3 chr3L 23612459 23613681 -929876 - TC1_DM DNA Tc1 0 1666 409 3 765 40099 6 0 2 chr3L 23613773 23618475 -925082 + DOC LINE Jockey 32 4724 -1 3 765 778 220 282 48 chr3L 23618491 23618945 -924612 + DNAREP1_DM LINE Penelope 2 561 -33 3 765 35 24 0 0 chr3L 23618959 23619001 -924556 + AT_rich Low_complexity Low_complexity 1 42 0 3 765 245 185 0 0 chr3L 23619049 23619103 -924454 - DNAREP1_DM LINE Penelope -3 591 538 3 765 373 170 402 0 chr3L 23620330 23620457 -923100 + DNAREP1_DM LINE Penelope 417 594 0 3 765 745 155 110 0 chr3L 23620455 23620610 -922947 - DMCR1A LINE CR1 -1433 3037 2866 3 765 1413 118 17 23 chr3L 23621944 23622280 -921277 + DNAREP1_DM LINE Penelope 39 410 -184 3 765 512 168 10 10 chr3L 23622270 23622372 -921185 - LINEJ1_DM LINE Jockey -1618 3402 3301 3 765 1703 160 111 3 chr3L 23622380 23622755 -920802 - LINEJ1_DM LINE Jockey -2275 2745 2331 3 765 822 112 14 0 chr3L 23623579 23623722 -919835 - Gypsy9_LTR LTR Gypsy 0 336 192 3 765 7768 94 73 0 chr3L 23623721 23624981 -918576 + BS3_DM LINE Jockey 584 1784 -6 3 765 290 51 0 0 chr3L 23624985 23625024 -918533 - Gypsy9_LTR LTR Gypsy -136 200 162 3 765 254 306 0 0 chr3L 23625702 23625787 -917770 + ACCORD_I LTR Gypsy 1981 2065 -4223 3 765 1894 102 52 38 chr3L 23626704 23627051 -916506 + DNAREP1_DM LINE Penelope 243 594 0 3 765 30 45 0 0 chr3L 23627284 23627328 -916229 + AT_rich Low_complexity Low_complexity 1 44 0 3 765 1027 122 6 6 chr3L 23628178 23628351 -915206 + DNAREP1_DM LINE Penelope 2 174 -420 3 765 737 169 64 44 chr3L 23628343 23628547 -915010 + DNAREP1_DM LINE Penelope 90 297 -297 3 765 236 61 0 0 chr3L 23630724 23630757 -912800 - ROOA_I LTR Pao -3882 2967 2935 3 765 6120 41 15 0 chr3L 23630760 23631543 -912014 + DOC3_DM LINE Jockey 2591 3385 -1355 3 765 4574 35 112 0 chr3L 23631544 23632475 -911082 + DOC3_DM LINE Jockey 3706 4740 0 3 765 2704 38 0 3 chr3L 23632476 23632820 -910737 - ROOA_I LTR Pao -3908 2941 2599 3 765 2492 20 3 0 chr3L 23632813 23633116 -910441 + DIVER2_I LTR Pao 3844 4147 0 3 765 3212 26 0 0 chr3L 23633116 23633501 -910056 + DIVER2_LTR LTR Pao 1 385 0 3 765 1757 14 0 0 chr3L 23633501 23633709 -909848 - DMCR1A LINE CR1 -1265 3205 2998 3 765 10052 40 43 3 chr3L 23633696 23635032 -908525 - DMCR1A LINE CR1 -1628 2842 1454 3 765 2644 38 12 3 chr3L 23635020 23635360 -908197 - DMCR1A LINE CR1 -3187 1283 941 3 765 6019 46 7 18 chr3L 23635359 23636176 -907381 - ROOA_I LTR Pao -4532 2317 1510 3 765 9450 35 33 21 chr3L 23636187 23637485 -906072 - ROOA_I LTR Pao -5535 1314 1 3 765 321 138 0 33 chr3L 23637485 23637545 -906012 - ROOA_LTR LTR Pao 0 386 329 3 765 21 82 0 0 chr3L 23638164 23638213 -905344 + AT_rich Low_complexity Low_complexity 1 49 0 3 765 540 194 47 88 chr3L 23638288 23638480 -905077 + Gypsy8_LTR LTR Gypsy 121 304 0 3 765 289 218 13 0 chr3L 23638480 23638558 -904999 + Gypsy8_I LTR Gypsy 1 79 -4268 3 765 369 247 24 54 chr3L 23638659 23638826 -904731 + Gypsy8_I LTR Gypsy 68 229 -4118 3 765 34 0 0 0 chr3L 23639958 23639992 -903565 + AT_rich Low_complexity Low_complexity 1 34 0 3 765 9068 16 4 0 chr3L 23640083 23641184 -902373 - PROTOP_A DNA P 0 1105 1 3 765 29 47 0 0 chr3L 23641268 23641311 -902246 + AT_rich Low_complexity Low_complexity 1 43 0 3 765 883 118 83 6 chr3L 23641358 23641533 -902024 + DNAREP1_DM LINE Penelope 431 593 -1 3 765 913 159 150 12 chr3L 23641541 23641795 -901762 - DNAREP1_DM LINE Penelope -305 289 1 3 765 255 191 73 0 chr3L 23642748 23642816 -900741 - DNAREP1_DM LINE Penelope -84 510 438 3 765 406 94 16 0 chr3L 23642827 23642891 -900666 - Mariner2_DM DNA Tc1 -409 503 439 3 765 739 59 170 0 chr3L 23643101 23643289 -900268 - Mariner2_DM DNA Tc1 -683 229 10 3 765 8682 22 17 4 chr3L 23643486 23644576 -898981 + PROTOP_A DNA P 1 1105 0 3 765 402 278 121 38 chr3L 23645559 23645900 -897657 - ACCORD2_I LTR Gypsy -2288 4924 4636 3 765 1181 121 175 6 chr3L 23646754 23647129 -896428 - DNAREP1_DM LINE Penelope -20 574 1 3 765 26 30 0 0 chr3L 23647353 23647386 -896171 + AT_rich Low_complexity Low_complexity 1 33 0 3 765 296 269 8 8 chr3L 23647765 23647896 -895661 + TC1-2_DM DNA Tc1 737 867 -777 3 765 695 300 35 20 chr3L 23648004 23648348 -895209 + TC1-2_DM DNA Tc1 1032 1380 -264 3 765 21 0 0 0 chr3L 23648496 23648517 -895040 + AT_rich Low_complexity Low_complexity 1 21 0 3 765 3457 24 9 0 chr3L 23648592 23649016 -894541 + ROO_LTR LTR Pao 1 428 0 3 765 28 48 0 0 chr3L 23649094 23649136 -894421 + AT_rich Low_complexity Low_complexity 1 42 0 3 765 4936 28 24 0 chr3L 23649525 23650162 -893395 + G4_DM LINE Jockey 3205 3856 0 3 765 3101 176 180 73 chr3L 23650443 23651447 -892110 + Gypsy2_I LTR Gypsy 2 1113 -5022 3 765 1858 113 88 30 chr3L 23651436 23651764 -891793 + Gypsy2_I LTR Gypsy 1368 1714 -4421 3 765 328 292 0 0 chr3L 23651942 23652048 -891509 + Gypsy6_I LTR Gypsy 2373 2478 -4534 3 765 4725 143 46 47 chr3L 23652042 23652953 -890604 + Gypsy2_I LTR Gypsy 2166 3075 -3060 3 765 2071 305 106 1 chr3L 23652949 23653865 -889692 + Gypsy6_I LTR Gypsy 4126 5137 -1875 3 765 6090 104 15 61 chr3L 23653892 23654952 -888605 + Gypsy2_I LTR Gypsy 5115 6125 -10 3 765 3059 40 112 0 chr3L 23654995 23655442 -888115 + DOC5_DM LINE Jockey 3897 4393 -289 3 765 406 161 248 39 chr3L 23655681 23655810 -887747 - DNAREP1_DM LINE Penelope -397 197 42 3 765 513 187 256 10 chr3L 23655892 23656107 -887450 - NINJA_LTR LTR Pao -1 316 49 3 765 1307 33 119 0 chr3L 23656244 23656572 -886985 - DOC5_DM LINE Jockey 0 4682 4316 3 765 1009 16 0 0 chr3L 23656579 23656701 -886856 - DOC5_DM LINE Jockey -1321 3361 3240 3 765 271 95 0 0 chr3L 23656701 23656743 -886814 - DOC5_DM LINE Jockey -1691 2991 2950 3 765 1536 48 5 0 chr3L 23656738 23656944 -886613 - DOC5_DM LINE Jockey -2306 2376 2170 3 765 2236 35 10 0 chr3L 23656943 23657232 -886325 - DOC5_DM LINE Jockey -2689 1993 1702 3 765 4005 72 93 14 chr3L 23657230 23657918 -885639 - DOC5_DM LINE Jockey -3938 744 3 3 765 188 67 33 0 chr3L 23658288 23658318 -885239 + (TATAA)n Simple_repeat Simple_repeat 5 35 0 3 765 330 204 155 35 chr3L 23658382 23658524 -885033 - DNAREP1_DM LINE Penelope -435 159 1 3 765 314 209 0 0 chr3L 23658656 23658723 -884834 - Gypsy8_I LTR Gypsy -3311 1036 970 3 765 442 226 153 131 chr3L 23658887 23659162 -884395 - Gypsy8_I LTR Gypsy -3688 659 379 3 765 386 168 0 98 chr3L 23659618 23659730 -883827 - Gypsy8_I LTR Gypsy -2851 1496 1396 3 765 567 125 31 0 chr3L 23659750 23659841 -883716 - Gypsy8_I LTR Gypsy -3192 1155 1062 3 765 2990 70 1 21 chr3L 23659841 23660283 -883274 - STALKER4_LTR LTR Gypsy -3 399 1 3 765 1935 18 52 17 chr3L 23660283 23660500 -883057 - STALKER4_I LTR Gypsy 0 6530 6299 3 765 302 0 26 0 chr3L 23660500 23660538 -883019 + (TAA)n Simple_repeat Simple_repeat 2 40 0 3 765 1935 18 52 17 chr3L 23660538 23660608 -882949 - STALKER4_I LTR Gypsy -232 6298 6233 3 765 1596 35 65 17 chr3L 23660608 23660838 -882719 - BATUMI_LTR LTR Pao 0 272 32 3 765 4661 68 0 5 chr3L 23660860 23661524 -882033 - BATUMI_I LTR Pao 0 7963 7303 3 765 2310 53 9 9 chr3L 23661547 23661872 -881685 + BATUMI_I LTR Pao 6427 6751 -1212 3 765 24455 38 10 69 chr3L 23661865 23665557 -878000 - BATUMI_I LTR Pao -4489 3474 1 3 765 1710 42 8 29 chr3L 23665557 23665803 -877754 - BATUMI_LTR LTR Pao 0 272 32 3 765 8477 11 76 1 chr3L 23665821 23667053 -876504 - STALKER4_I LTR Gypsy -289 6241 4917 3 765 4166 20 18 0 chr3L 23667050 23667540 -876017 - STALKER4_I LTR Gypsy -1844 4686 4188 3 765 22254 43 32 10 chr3L 23667538 23670634 -872923 - STALKER4_I LTR Gypsy -3027 3503 291 3 765 28 48 0 0 chr3L 23670641 23670683 -872874 + AT_rich Low_complexity Low_complexity 1 42 0 3 765 3303 53 1 14 chr3L 23670771 23671210 -872347 - STALKER4_LTR LTR Gypsy -3 399 1 3 765 237 247 13 13 chr3L 23671216 23671294 -872263 - Gypsy8_I LTR Gypsy -3830 2823 2746 3 765 1223 232 50 31 chr3L 23671332 23671705 -871852 - Gypsy8_I LTR Gypsy -3311 1036 690 3 765 1430 158 26 4 chr3L 23671739 23672005 -871552 - Gypsy8_I LTR Gypsy -3846 501 230 3 765 715 282 75 0 chr3L 23672136 23672377 -871180 - OSVALDO_I LTR Gypsy -5982 671 413 3 765 38 0 0 0 chr3L 23672892 23672930 -870627 + AT_rich Low_complexity Low_complexity 1 38 0 3 765 244 130 22 0 chr3L 23672949 23672995 -870562 - Gypsy11_I LTR Gypsy -713 2811 2765 3 765 451 182 11 0 chr3L 23673037 23673125 -870432 - Stalker2_I LTR Gypsy -948 5949 5861 3 765 2948 51 32 0 chr3L 23673142 23673514 -870043 - BS3_DM LINE Jockey -793 997 614 3 765 682 119 119 0 chr3L 23673513 23673631 -869926 - BS3_DM LINE Jockey -839 951 820 3 765 2634 228 89 18 chr3L 23673629 23674537 -869020 - Stalker2_I LTR Gypsy -1041 5856 4796 3 765 352 250 131 7 chr3L 23674632 23674769 -868788 + FW_DM LINE Jockey 3278 3431 -1261 3 765 706 148 0 0 chr3L 23674763 23674878 -868679 - DM412 LTR Gypsy -1974 4923 4809 3 765 39 50 0 0 chr3L 23675308 23675368 -868189 + AT_rich Low_complexity Low_complexity 1 60 0 4 765 1392 202 295 4 chr3L 23675398 23675876 -867681 - DM412 LTR Gypsy -2250 4647 4031 3 765 568 100 194 30 chr3L 23675881 23676015 -867542 - DNAREP1_DM LINE Penelope -208 386 231 4 765 939 154 36 45 chr3L 23676012 23676323 -867234 - DNAREP1_DM LINE Penelope -279 315 84 4 765 7911 19 60 15 chr3L 23676321 23677452 -866105 + G4_DM LINE Jockey 480 1661 -2195 4 765 638 47 12 0 chr3L 23677461 23677547 -866010 + G4_DM LINE Jockey 1894 1980 -1876 4 765 4761 39 32 10 chr3L 23677545 23678160 -865397 + G4_DM LINE Jockey 2325 2953 -903 4 765 389 74 56 0 chr3L 23678142 23678196 -865361 + G4_DM LINE Jockey 3117 3173 -683 4 765 3446 55 84 2 chr3L 23678190 23678677 -864880 + G4_DM LINE Jockey 3329 3855 -1 4 765 544 99 312 6 chr3L 23678699 23678890 -864667 - DNAREP1_DM LINE Penelope -346 248 1 4 765 527 77 0 0 chr3L 23678888 23678966 -864591 - DNAREP1_DM LINE Penelope -336 258 181 4 765 428 190 86 70 chr3L 23678943 23679130 -864427 - DNAREP1_DM LINE Penelope -301 293 104 4 765 449 233 285 19 chr3L 23679304 23679518 -864039 + FW_DM LINE Jockey 3389 3659 -1033 3 765 4065 47 109 16 chr3L 23679790 23680407 -863150 + TRANSIB3 DNA Transib 633 1306 -1577 4 765 3741 39 12 16 chr3L 23680415 23680910 -862647 + TRANSIB3 DNA Transib 2391 2883 0 4 765 21 0 0 0 chr3L 23680973 23680994 -862563 + AT_rich Low_complexity Low_complexity 1 21 0 4 765 461 0 58 0 chr3L 23681674 23681743 -861814 + (TA)n Simple_repeat Simple_repeat 1 73 0 4 765 397 136 136 64 chr3L 23682312 23682422 -861135 + DNAREP1_DM LINE Penelope 182 299 -295 4 765 25 0 0 0 chr3L 23682556 23682581 -860976 + AT_rich Low_complexity Low_complexity 1 25 0 4 765 22 0 0 0 chr3L 23682727 23682749 -860808 + AT_rich Low_complexity Low_complexity 1 22 0 4 765 25 0 0 0 chr3L 23682928 23682953 -860604 + AT_rich Low_complexity Low_complexity 1 25 0 4 765 339 260 3 3 chr3L 23683413 23683513 -860044 - Gypsy4_I LTR Gypsy -3106 3182 3098 4 765 264 221 152 35 chr3L 23684387 23684532 -859025 - Gypsy8_I LTR Gypsy -4185 162 1 4 765 298 219 65 100 chr3L 23684533 23684717 -858840 - Gypsy8_LTR LTR Gypsy -1 303 1 4 765 4506 45 101 14 chr3L 23684802 23685464 -858093 + TRANSIB3 DNA Transib 587 1306 -1577 4 765 3708 41 12 16 chr3L 23685472 23685966 -857591 + TRANSIB3 DNA Transib 2391 2882 -1 4 765 1041 143 139 3 chr3L 23687544 23687824 -855733 + DNAREP1_DM LINE Penelope 1 452 -142 4 765 299 89 18 0 chr3L 23687943 23687999 -855558 + (TA)n Simple_repeat Simple_repeat 1 57 0 4 765 4025 65 49 3 chr3L 23687999 23688567 -854990 + IDEFIX_LTR LTR Gypsy 1 594 0 4 765 4018 13 0 61 chr3L 23688578 23689085 -854472 - MICROPIA_LTR LTR Gypsy 0 476 1 4 765 1218 78 33 0 chr3L 23689085 23689259 -854298 + QUASIMODO_LTR LTR Gypsy 32 211 -447 4 765 223 205 0 57 chr3L 23689611 23689699 -853858 + A-rich Low_complexity Low_complexity 5 87 0 4 765 9252 24 7 0 chr3L 23689739 23690836 -852721 - PROTOP_A DNA P 0 1105 1 4 765 286 312 47 47 chr3L 23690843 23691075 -852482 + QUASIMODO_I LTR Gypsy 485 716 -5344 4 765 195 42 0 0 chr3L 23691170 23691194 -852363 + (ATATG)n Simple_repeat Simple_repeat 2 25 0 4 765 341 158 0 0 chr3L 23691234 23691291 -852266 + QUASIMODO_I LTR Gypsy 6004 6060 0 4 765 638 75 54 45 chr3L 23691291 23691402 -852155 + QUASIMODO_LTR LTR Gypsy 1 112 -546 4 765 583 348 39 37 chr3L 23691403 23692021 -851536 + Jockey2 LINE Jockey 2448 3066 -362 4 765 2667 34 14 22 chr3L 23692014 23692371 -851186 - PROTOP DNA P -1108 3372 3019 4 765 808 53 62 0 chr3L 23692364 23692477 -851080 - PROTOP DNA P -1372 3108 2989 4 765 471 48 0 0 chr3L 23692472 23692534 -851023 - PROTOP DNA P -4179 301 240 4 765 4915 53 93 1 chr3L 23692552 23693230 -850327 - G4_DM LINE Jockey 0 3856 3117 4 765 2289 41 105 12 chr3L 23693212 23693788 -849769 - G4_DM LINE Jockey -903 2953 2325 4 765 638 47 12 0 chr3L 23693786 23693872 -849685 - G4_DM LINE Jockey -1876 1980 1894 4 765 7508 23 105 1 chr3L 23693881 23695253 -848304 - G4_DM LINE Jockey -2195 1661 1 4 765 301 0 204 0 chr3L 23695256 23695300 -848257 - PROTOP_A DNA P -1052 53 1 4 765 1343 136 31 31 chr3L 23695706 23695964 -847593 + DNAREP1_DM LINE Penelope 1 258 -336 4 765 1248 77 313 0 chr3L 23695989 23696196 -847361 + DNAREP1_DM LINE Penelope 322 593 -1 4 765 355 319 152 13 chr3L 23696451 23696838 -846719 + DIVER2_I LTR Pao 791 1231 -2916 4 765 277 313 20 0 chr3L 23696941 23697040 -846517 + DIVER2_I LTR Pao 1469 1569 -2578 4 765 288 229 0 0 chr3L 23697195 23697243 -846314 + DIVER2_I LTR Pao 4094 4141 -6 4 765 247 98 24 0 chr3L 23697378 23697419 -846138 + DMCR1A LINE CR1 4134 4175 -295 4 765 32 0 0 0 chr3L 23697470 23697502 -846055 + AT_rich Low_complexity Low_complexity 1 32 0 4 765 1122 112 53 43 chr3L 23697502 23697689 -845868 - DNAREP1_DM LINE Penelope -21 573 385 4 765 487 151 0 11 chr3L 23697705 23697792 -845765 + DMCR1A LINE CR1 4381 4466 -4 4 765 23 33 0 0 chr3L 23697880 23697910 -845647 + AT_rich Low_complexity Low_complexity 1 30 0 4 765 2518 250 115 80 chr3L 23698045 23699527 -844030 + Gypsy2_I LTR Gypsy 182 1714 -4421 4 765 361 292 0 0 chr3L 23699705 23699811 -843746 + Gypsy6_I LTR Gypsy 2373 2478 -4534 4 765 5023 144 46 47 chr3L 23699805 23700716 -842841 + Gypsy2_I LTR Gypsy 2166 3075 -3060 4 765 1265 112 6 0 chr3L 23700702 23700880 -842677 + Gypsy2_I LTR Gypsy 3394 3572 -2563 4 765 6296 114 76 48 chr3L 23700896 23701989 -841568 + Gypsy2_I LTR Gypsy 3623 4745 -1390 4 765 5778 135 20 21 chr3L 23701978 23703036 -840521 + Gypsy2_I LTR Gypsy 5115 7010 -2 4 765 3210 40 112 0 chr3L 23703081 23703528 -840029 + DOC5_DM LINE Jockey 3897 4393 -289 4 765 818 220 26 0 chr3L 23703648 23703839 -839718 + Gypsy2_I LTR Gypsy 758 953 -5182 4 765 1410 95 16 0 chr3L 23703832 23704022 -839535 + Gypsy2_I LTR Gypsy 1062 1254 -4881 4 765 2155 211 82 21 chr3L 23704020 23704724 -838833 + Gypsy2_I LTR Gypsy 1369 2152 -4860 4 765 4702 106 33 22 chr3L 23704877 23705599 -837958 + Gypsy2_I LTR Gypsy 2467 3196 -2939 4 765 6778 121 84 42 chr3L 23705603 23706768 -836789 + Gypsy2_I LTR Gypsy 3673 4886 -1249 4 765 1540 135 0 171 chr3L 23706778 23707135 -836422 + Gypsy2_I LTR Gypsy 5813 6108 -27 4 765 580 186 25 12 chr3L 23707284 23707449 -836108 + DM176_LTR LTR Gypsy 1 223 -284 4 765 23 33 0 0 chr3L 23708161 23708191 -835366 + AT_rich Low_complexity Low_complexity 1 30 0 4 765 22 35 0 0 chr3L 23708271 23708300 -835257 + AT_rich Low_complexity Low_complexity 1 29 0 4 765 23 86 0 0 chr3L 23709779 23709837 -833720 + AT_rich Low_complexity Low_complexity 1 58 0 4 765 484 177 64 64 chr3L 23709923 23710080 -833477 - DMCR1A LINE CR1 -56 4414 4258 4 765 379 208 125 0 chr3L 23710389 23710485 -833072 - DMCR1A LINE CR1 -311 4159 4052 4 765 2787 149 192 1 chr3L 23710942 23711842 -831715 - DMCR1A LINE CR1 -511 3959 2888 4 765 3054 144 2 11 chr3L 23711841 23712366 -831191 - DMCR1A LINE CR1 -1689 2781 2262 4 765 768 186 12 0 chr3L 23712367 23712528 -831029 - DMCR1A LINE CR1 -3058 1412 1250 4 765 2101 201 80 8 chr3L 23712963 23713449 -830108 - DMCR1A LINE CR1 -3353 1117 597 4 765 970 173 47 34 chr3L 23713449 23713683 -829874 - DNAREP1_DM LINE Penelope -272 322 86 4 765 1208 189 4 11 chr3L 23713704 23713977 -829580 - DNAREP1_DM LINE Penelope -323 271 1 4 765 416 305 28 28 chr3L 23715098 23715277 -828280 - Jockey2 LINE Jockey -406 3022 2844 4 765 26 64 0 0 chr3L 23715632 23715679 -827878 + AT_rich Low_complexity Low_complexity 1 47 0 4 765 236 139 0 0 chr3L 23716148 23716191 -827366 + G6_DM LINE Jockey 1 43 -1999 4 765 233 250 54 0 chr3L 23717429 23717485 -826072 + LINEJ1_DM LINE Jockey 2441 2499 -2521 4 765 1176 308 27 22 chr3L 23718073 23718726 -824831 + G2_DM LINE Jockey 1716 2238 -864 4 765 44 63 0 0 chr3L 23718990 23719069 -824488 + AT_rich Low_complexity Low_complexity 1 79 0 4 765 24 0 0 0 chr3L 23719555 23719579 -823978 + AT_rich Low_complexity Low_complexity 1 24 0 4 765 23 33 0 0 chr3L 23721052 23721082 -822475 + AT_rich Low_complexity Low_complexity 1 30 0 4 765 26 88 0 0 chr3L 23722012 23722080 -821477 + AT_rich Low_complexity Low_complexity 1 68 0 4 765 1042 160 127 50 chr3L 23722254 23722483 -821074 + DNAREP1_DM LINE Penelope 67 442 -152 4 765 210 71 0 0 chr3L 23722483 23722511 -821046 + (CAGA)n Simple_repeat Simple_repeat 3 30 0 4 765 1042 146 131 42 chr3L 23722511 23722572 -820985 + DNAREP1_DM LINE Penelope 443 519 -75 4 765 886 124 0 0 chr3L 23722770 23722907 -820650 + DNAREP1_DM LINE Penelope 1 137 -457 4 765 519 139 0 11 chr3L 23722890 23722977 -820580 + DMCR1A LINE CR1 2933 3018 -1452 4 765 368 265 76 22 chr3L 23723074 23723259 -820298 - MAX_LTR LTR Pao -40 281 87 4 765 498 17 17 0 chr3L 23723252 23723312 -820245 - MAX_I LTR Pao -725 7189 7129 4 765 2449 190 84 13 chr3L 23723310 23723833 -819724 - MAX_I LTR Pao -2578 5336 4777 4 765 387 111 0 0 chr3L 23723928 23723991 -819566 + S_DM DNA Tc1 41 103 -1633 4 95 1077 106 11 0 chr3L 23723992 23724171 -819386 + S_DM DNA Tc1 243 423 -1313 4 766 536 191 102 7 chr3L 23724169 23724306 -819251 - DMRT1A LINE R1 -4574 609 460 4 766 574 109 0 90 chr3L 23724416 23724527 -819030 - DNAREP1_DM LINE Penelope -493 101 1 4 766 1427 98 64 72 chr3L 23725720 23725984 -817573 + STALKER4_LTR LTR Gypsy 1 262 -140 4 766 3169 3 0 0 chr3L 23725984 23726330 -817227 + Invader4_LTR LTR Gypsy 1 346 0 4 766 15708 10 14 21 chr3L 23726330 23728168 -815389 + Invader4_I LTR Gypsy 1 1825 -588 4 766 1255 97 26 119 chr3L 23728207 23728510 -815047 + Invader4_I LTR Gypsy 2139 2413 0 4 766 2357 118 0 3 chr3L 23728510 23728857 -814700 + Invader4_LTR LTR Gypsy 1 346 0 4 766 22 94 0 0 chr3L 23728857 23728921 -814636 + AT_rich Low_complexity Low_complexity 1 64 0 4 766 4385 201 67 22 chr3L 23729099 23730075 -813482 + Gypsy_I LTR Gypsy 1349 2367 -4140 4 766 258 105 0 0 chr3L 23730084 23730122 -813435 + (CATA)n Simple_repeat Simple_repeat 3 40 0 4 766 1170 121 0 0 chr3L 23730124 23730978 -812579 + (TA)n Simple_repeat Simple_repeat 1 854 0 4 766 35 0 0 0 chr3L 23730986 23731021 -812536 + AT_rich Low_complexity Low_complexity 1 35 0 4 766 212 212 0 15 chr3L 23731464 23731531 -812026 + (CATA)n Simple_repeat Simple_repeat 3 68 0 4 766 234 250 123 91 chr3L 23731686 23731840 -811717 - DNAREP1_DM LINE Penelope -140 454 296 4 766 735 135 11 128 chr3L 23731846 23732025 -811532 + DNAREP1_DM LINE Penelope 34 191 -403 4 766 818 101 270 0 chr3L 23732033 23732192 -811365 + DNAREP1_DM LINE Penelope 388 589 -5 4 766 522 252 22 71 chr3L 23732528 23732754 -810803 + DNAREP1_DM LINE Penelope 32 246 -348 4 766 21 0 0 0 chr3L 23732765 23732786 -810771 + AT_rich Low_complexity Low_complexity 1 21 0 4 766 232 111 0 0 chr3L 23732836 23732872 -810685 + DNAREP1_DM LINE Penelope 1 36 -558 4 766 677 184 46 39 chr3L 23732854 23733007 -810550 - DNAREP1_DM LINE Penelope -134 460 307 4 766 1282 267 168 4 chr3L 23734787 23735457 -808100 + BEL_I LTR Pao 107 886 -4518 4 766 1034 134 18 0 chr3L 23735489 23735660 -807897 - DNAREP1_DM LINE Penelope -420 174 1 4 766 25 0 0 0 chr3L 23735660 23735685 -807872 + AT_rich Low_complexity Low_complexity 1 25 0 4 766 235 143 0 0 chr3L 23735710 23735745 -807812 - DNAREP1_DM LINE Penelope -547 47 13 4 766 968 98 76 65 chr3L 23736285 23736470 -807087 - DNAREP1_DM LINE Penelope -42 552 366 4 766 542 29 47 37 chr3L 23736494 23736601 -806956 + (TTATA)n Simple_repeat Simple_repeat 5 112 0 4 766 340 343 12 6 chr3L 23736908 23737075 -806482 - NOMAD_I LTR Gypsy -300 6272 6105 4 766 251 350 126 5 chr3L 23737713 23737928 -805629 - NOMAD_I LTR Gypsy -1084 5488 5248 4 766 365 310 49 0 chr3L 23737921 23738063 -805494 - NOMAD_I LTR Gypsy -1481 5091 4943 4 766 596 208 133 30 chr3L 23738171 23738404 -805153 + IDEFIX_LTR LTR Gypsy 286 542 -52 4 766 2295 145 66 48 chr3L 23738682 23739197 -804360 + DNAREP1_DM LINE Penelope 70 593 -1 4 766 339 106 0 0 chr3L 23740102 23740149 -803408 - DNAREP1_DM LINE Penelope -207 387 341 4 766 825 206 32 82 chr3L 23740330 23740610 -802947 - DNAREP1_DM LINE Penelope -105 489 224 4 766 34 79 0 0 chr3L 23742067 23742143 -801414 + AT_rich Low_complexity Low_complexity 1 76 0 4 766 698 360 82 18 chr3L 23742781 23743295 -800262 - Ulysses_I LTR Gypsy -681 5700 5154 4 766 759 333 24 16 chr3L 23743453 23743877 -799680 - Ulysses_I LTR Gypsy -1614 4767 4341 4 766 261 146 73 0 chr3L 23744293 23744348 -799209 + MDG1_I LTR Gypsy 714 772 -5824 4 766 549 135 0 0 chr3L 23744368 23744457 -799100 + DNAREP1_DM LINE Penelope 31 119 -475 4 766 233 69 0 0 chr3L 23744673 23744702 -798855 + G3_DM LINE Jockey 1 29 -4576 4 766 233 345 38 19 chr3L 23745352 23745565 -797992 + DIVER2_I LTR Pao 2867 3083 -1064 4 766 1275 328 19 4 chr3L 23745627 23746157 -797400 + DIVER2_I LTR Pao 3506 4043 -104 4 766 468 35 0 0 chr3L 23746799 23746856 -796701 + TRANSIB2 DNA Transib 577 633 -2211 4 766 1545 28 0 0 chr3L 23746855 23747037 -796520 + TRANSIB2 DNA Transib 837 1018 -1826 4 766 2311 38 7 7 chr3L 23747051 23747342 -796215 + TRANSIB2 DNA Transib 1177 1467 -1377 4 766 1780 51 79 0 chr3L 23747345 23747599 -795958 + TRANSIB2 DNA Transib 2571 2844 0 4 766 839 217 0 0 chr3L 23747641 23747825 -795732 + Gypsy11_I LTR Gypsy 1801 1984 -1540 4 766 322 208 57 130 chr3L 23747875 23748100 -795457 + Gypsy8_LTR LTR Gypsy 4 303 -1 4 766 289 219 55 0 chr3L 23748104 23748177 -795380 + LINEJ1_DM LINE Jockey 4610 4686 -334 4 766 10463 60 73 12 chr3L 23748195 23749665 -793892 + DMCR1A LINE CR1 7 1565 -2905 4 766 1567 89 26 4 chr3L 23749664 23749890 -793667 + DMCR1A LINE CR1 1841 2071 -2399 4 766 12189 34 34 0 chr3L 23749894 23751379 -792178 + DMCR1A LINE CR1 2869 4403 -67 4 766 639 200 67 36 chr3L 23751403 23751648 -791909 + DNAREP1_DM LINE Penelope 89 329 -265 4 766 1626 63 9 0 chr3L 23751962 23752184 -791373 + TRANSIB3 DNA Transib 34 257 -2626 4 766 1786 73 7 37 chr3L 23752184 23752453 -791104 + Invader2_LTR LTR Gypsy 1 261 -5 4 766 3515 56 0 11 chr3L 23752460 23752929 -790628 + TRANSIB3 DNA Transib 257 720 -2163 4 766 216 0 0 0 chr3L 23752929 23752953 -790604 + (A)n Simple_repeat Simple_repeat 1 24 0 4 766 42651 1 0 0 chr3L 23752958 23757680 -785877 + DOC LINE Jockey 4 4725 0 4 766 3237 63 5 5 chr3L 23757683 23758114 -785443 + TRANSIB3 DNA Transib 706 1136 -1747 4 766 845 99 0 16 chr3L 23758114 23758237 -785320 + TRANSIB3 DNA Transib 2179 2299 -584 4 766 2437 203 49 18 chr3L 23758333 23758889 -784668 - Gypsy8_I LTR Gypsy -1267 3080 2508 4 766 590 221 0 0 chr3L 23758929 23759051 -784506 - Gypsy8_I LTR Gypsy -1945 2402 2281 4 766 3551 98 183 70 chr3L 23759052 23760223 -783334 - Gypsy12A_LTR LTR Gypsy -1 2279 976 4 766 2495 81 119 16 chr3L 23760248 23760636 -782921 - Gypsy12A_LTR LTR Gypsy -1700 580 153 4 766 536 344 10 33 chr3L 23760627 23760928 -782629 - OSVALDO_I LTR Gypsy -4349 2304 2011 4 766 828 154 105 0 chr3L 23760944 23761106 -782451 - Gypsy8_I LTR Gypsy -3891 456 278 4 766 425 269 0 0 chr3L 23761221 23761340 -782217 - OSVALDO_I LTR Gypsy -6100 553 435 4 766 2182 237 80 18 chr3L 23762149 23762820 -780737 + DM412 LTR Gypsy 5633 6345 -552 4 766 659 125 219 17 chr3L 23762820 23763132 -780425 + DNAREP1_DM LINE Penelope 1 332 -262 4 766 25 65 0 0 chr3L 23764733 23764779 -778778 + AT_rich Low_complexity Low_complexity 1 46 0 4 766 1332 149 83 108 chr3L 23764807 23765227 -778330 + DNAREP1_DM LINE Penelope 1 332 -262 4 766 33 25 0 0 chr3L 23765304 23765344 -778213 + AT_rich Low_complexity Low_complexity 1 40 0 4 766 886 119 60 0 chr3L 23765501 23765652 -777905 + DNAREP1_DM LINE Penelope 1 160 -434 4 766 214 122 0 47 chr3L 23766023 23766066 -777491 + A-rich Low_complexity Low_complexity 3 43 0 4 766 1546 38 0 0 chr3L 23767027 23767213 -776344 - Transib5 DNA Transib -24 2977 2792 4 766 3243 41 14 0 chr3L 23767271 23767687 -775870 - Transib5 DNA Transib -211 2790 2369 4 766 6828 26 8 59 chr3L 23767685 23768651 -774906 - PROTOP_A DNA P -6 1099 183 4 766 47 0 0 0 chr3L 23769086 23769133 -774424 + AT_rich Low_complexity Low_complexity 1 47 0 4 766 21 36 0 0 chr3L 23769793 23769821 -773736 + AT_rich Low_complexity Low_complexity 1 28 0 4 766 295 311 36 67 chr3L 23770222 23770415 -773142 + Gypsy3_I LTR Gypsy 1179 1365 -4812 4 766 21 57 0 0 chr3L 23770849 23770884 -772673 + AT_rich Low_complexity Low_complexity 1 35 0 4 766 23 33 0 0 chr3L 23771208 23771238 -772319 + AT_rich Low_complexity Low_complexity 1 30 0 4 766 1131 335 48 43 chr3L 23771949 23772323 -771234 + Gypsy4_I LTR Gypsy 2431 2901 -3606 4 766 1564 28 19 0 chr3L 23772323 23772537 -771020 + TLD2 Unknown Unknown 1 218 0 4 766 1131 335 48 43 chr3L 23772537 23773176 -770381 + Gypsy4_I LTR Gypsy 2902 3709 -2798 4 766 246 292 49 49 chr3L 23773689 23773851 -769706 + GTWIN_I LTR Gypsy 4123 4284 -2137 4 766 43 0 0 0 chr3L 23775767 23775810 -767747 + AT_rich Low_complexity Low_complexity 1 43 0 4 766 1635 21 0 0 chr3L 23775826 23776012 -767545 - PROTOP_A DNA P -919 186 1 4 766 4302 36 13 0 chr3L 23776012 23776562 -766995 - Transib5 DNA Transib -663 2338 1782 4 766 3391 54 70 61 chr3L 23776572 23776596 -766961 - Transib5 DNA Transib -2442 559 535 4 766 249 33 0 0 chr3L 23776596 23776626 -766931 + (TA)n Simple_repeat Simple_repeat 2 31 0 4 766 3391 54 70 61 chr3L 23776626 23777155 -766402 - Transib5 DNA Transib -2467 534 3 4 766 21 36 0 0 chr3L 23779796 23779824 -763733 + AT_rich Low_complexity Low_complexity 1 28 0 4 766 1568 112 199 3 chr3L 23780810 23781142 -762415 + DM297_I LTR Gypsy 4185 4581 -1586 4 766 429 105 0 38 chr3L 23781166 23781245 -762312 - G5A_DM LINE Jockey -8 2833 2758 4 766 319 87 0 0 chr3L 23781256 23781302 -762255 + BS2 LINE Jockey 11 56 -4665 4 766 5950 84 3 8 chr3L 23781300 23782149 -761408 + BS2 LINE Jockey 369 1213 -3508 4 766 2547 184 120 9 chr3L 23782154 23783048 -760509 + BS2 LINE Jockey 1430 2422 -2299 4 766 2062 66 14 14 chr3L 23783048 23783341 -760216 - G5A_DM LINE Jockey -445 2396 2104 4 766 10660 31 0 1 chr3L 23783340 23784648 -758909 + DMCR1A LINE CR1 347 1652 -2818 4 766 17550 31 13 4 chr3L 23784643 23786825 -756732 + DMCR1A LINE CR1 2027 4229 -241 4 766 561 314 35 0 chr3L 23786822 23787080 -756477 - G5_DM LINE Jockey -3922 934 668 4 766 34 24 0 0 chr3L 23787799 23787840 -755717 + AT_rich Low_complexity Low_complexity 1 41 0 4 766 444 164 172 0 chr3L 23788478 23788600 -754957 - Gypsy8_I LTR Gypsy -4190 157 15 4 766 764 154 22 20 chr3L 23788598 23788866 -754691 - DNAREP1_DM LINE Penelope -262 332 90 4 766 869 248 39 27 chr3L 23790264 23790600 -752957 - Gypsy_LTR LTR Gypsy -114 368 29 4 766 946 92 0 0 chr3L 23791539 23791670 -751887 - BS3_DM LINE Jockey -840 950 820 4 766 336 247 0 0 chr3L 23791666 23791755 -751802 - Stalker2_I LTR Gypsy -1597 5805 5717 4 766 664 201 6 29 chr3L 23791796 23791970 -751587 + DM297_I LTR Gypsy 2785 2954 -3213 4 766 3647 54 12 8 chr3L 23791947 23792429 -751128 - Baggins1 LINE LOA -4 5449 4966 4 766 798 47 9 0 chr3L 23792419 23792525 -751032 - Baggins1 LINE LOA -689 4764 4658 4 766 499 235 0 0 chr3L 23792565 23792680 -750877 - DM297_I LTR Gypsy -784 5328 5214 4 766 1891 183 93 26 chr3L 23792915 23793809 -749748 - DM297_I LTR Gypsy -1354 4813 3727 4 766 231 154 0 44 chr3L 23793854 23793922 -749635 - DM297_I LTR Gypsy -2602 3565 3501 4 766 2358 99 38 20 chr3L 23794245 23794645 -748912 - PROTOP_B DNA P -746 407 1 4 766 505 148 56 24 chr3L 23794809 23794934 -748623 + DM297_LTR LTR Gypsy 286 414 0 4 766 272 0 29 0 chr3L 23795421 23795456 -748101 + PROTOP_B DNA P 504 539 -614 4 766 21 0 0 0 chr3L 23796506 23796527 -747030 + AT_rich Low_complexity Low_complexity 1 21 0 4 766 43 64 0 0 chr3L 23796572 23796650 -746907 + AT_rich Low_complexity Low_complexity 1 78 0 4 766 4399 105 126 2 chr3L 23797171 23797956 -745601 - DMCR1A LINE CR1 -2 4468 3587 4 766 609 40 42 30 chr3L 23797953 23798088 -745469 - DMCR1A LINE CR1 -1255 3215 3037 4 766 4066 64 87 0 chr3L 23798094 23798690 -744867 - DMCR1A LINE CR1 -1555 2915 2268 4 766 1556 88 46 0 chr3L 23798696 23798936 -744621 - BS3_DM LINE Jockey -1 1789 1539 4 766 803 72 144 0 chr3L 23798929 23799054 -744503 - BS3_DM LINE Jockey -457 1333 1191 4 766 4211 63 83 0 chr3L 23799065 23799668 -743889 - BS3_DM LINE Jockey -983 807 155 4 766 368 208 0 0 chr3L 23799690 23799767 -743790 - BS2 LINE Jockey -1776 2945 2869 4 766 285 312 0 0 chr3L 23799802 23799898 -743659 - BS2 LINE Jockey -2538 2183 2088 4 766 3566 104 55 14 chr3L 23799902 23800486 -743071 - BS2 LINE Jockey -2741 1980 1373 4 766 2006 95 36 7 chr3L 23800481 23800787 -742770 - BS2 LINE Jockey -4209 512 198 4 766 11967 53 84 12 chr3L 23800783 23802508 -741049 - DMCR1A LINE CR1 -2275 2195 347 4 766 2097 65 10 14 chr3L 23802507 23802801 -740756 + G5A_DM LINE Jockey 2104 2396 -445 4 766 5505 171 25 8 chr3L 23802801 23803873 -739684 - BS2 LINE Jockey -2299 2422 1332 4 766 727 144 0 6 chr3L 23804165 23804326 -739231 - DM297_I LTR Gypsy -388 5779 5620 4 766 337 175 83 55 chr3L 23804367 23804476 -739081 + G5_DM LINE Jockey 385 496 -4360 4 766 792 314 28 0 chr3L 23804503 23804828 -738729 + G5_DM LINE Jockey 601 934 -3922 4 766 4136 78 48 10 chr3L 23804825 23805444 -738113 - DMCR1A LINE CR1 -241 4229 3587 4 766 709 45 0 30 chr3L 23805442 23805581 -737976 - DMCR1A LINE CR1 -1256 3214 3039 4 766 3580 67 147 0 chr3L 23805589 23806154 -737403 - DMCR1A LINE CR1 -1555 2915 2268 4 766 1556 88 46 0 chr3L 23806160 23806400 -737157 - BS3_DM LINE Jockey -1 1789 1539 4 766 853 56 144 0 chr3L 23806393 23806518 -737039 - BS3_DM LINE Jockey -457 1333 1191 4 766 4211 87 83 2 chr3L 23806529 23807231 -736326 - BS3_DM LINE Jockey -983 807 155 4 766 1618 291 38 5 chr3L 23807224 23807852 -735705 - BS3_DM LINE Jockey -1798 2923 2275 4 766 347 283 53 0 chr3L 23807876 23807989 -735568 - BS3_DM LINE Jockey -2518 2203 2085 4 766 697 161 105 0 chr3L 23809239 23809382 -734175 - BS3_DM LINE Jockey -2766 1955 1798 4 766 21 0 0 0 chr3L 23810478 23810499 -733058 + AT_rich Low_complexity Low_complexity 1 21 0 4 766 26 0 0 0 chr3L 23811269 23811295 -732262 + AT_rich Low_complexity Low_complexity 1 26 0 4 766 4208 108 196 3 chr3L 23811935 23812944 -730613 - BS3_DM LINE Jockey -3062 1659 456 4 766 7185 74 92 3 chr3L 23812969 23814520 -729037 - G5A_DM LINE Jockey -8 2833 1145 4 766 1704 127 37 9 chr3L 23814519 23814927 -728630 - BS2 LINE Jockey -3950 771 322 4 766 2526 80 16 0 chr3L 23815074 23815437 -728120 - BS2 LINE Jockey -341 4380 4012 4 766 5295 69 12 17 chr3L 23815417 23816168 -727389 - BS2 LINE Jockey -2127 2594 1848 4 766 464 269 26 20 chr3L 23816168 23816320 -727237 - BS2 LINE Jockey -3791 930 778 4 766 673 152 261 78 chr3L 23816698 23816955 -726602 - BS2 LINE Jockey -4404 317 14 4 766 1213 145 261 27 chr3L 23817600 23817935 -725622 + DNAREP1_DM LINE Penelope 167 578 -16 4 766 2020 20 16 0 chr3L 23817951 23818204 -725353 - DM176_LTR LTR Gypsy 0 507 251 4 766 2208 7 0 78 chr3L 23818205 23818512 -725045 - DM176_LTR LTR Gypsy -224 283 1 4 766 2971 5 0 0 chr3L 23818512 23818879 -724678 - DM176_I LTR Gypsy 0 6420 6054 4 766 47700 9 8 11 chr3L 23818853 23824770 -718787 - DM176_I LTR Gypsy -520 5900 1 4 766 2016 20 16 0 chr3L 23824770 23825023 -718534 - DM176_LTR LTR Gypsy 0 507 251 4 766 2208 7 0 78 chr3L 23825024 23825331 -718226 - DM176_LTR LTR Gypsy -224 283 1 4 766 216 0 0 0 chr3L 23825332 23825356 -718201 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 766 4633 9 35 0 chr3L 23825356 23825929 -717628 - IDEFIX_LTR LTR Gypsy -1 593 1 4 766 46829 6 0 1 chr3L 23825929 23831561 -711996 - IDEFIX_I LTR Gypsy 0 5628 1 4 766 25 0 0 0 chr3L 23831942 23831967 -711590 + AT_rich Low_complexity Low_complexity 1 25 0 4 766 4642 9 35 0 chr3L 23832156 23832730 -710827 - IDEFIX_LTR LTR Gypsy 0 594 1 4 766 450 49 0 0 chr3L 23832730 23832791 -710766 + (TA)n Simple_repeat Simple_repeat 2 62 0 4 766 401 72 0 18 chr3L 23833863 23833920 -709637 - PROTOP_A DNA P -1 1104 1048 4 766 5730 26 126 10 chr3L 23833911 23834733 -708824 - PROTOP_A DNA P -187 918 1 4 766 1943 152 52 119 chr3L 23834940 23835530 -708027 + DNAREP1_DM LINE Penelope 5 555 -39 4 766 749 106 109 71 chr3L 23835540 23835723 -707834 + Gypsy6_LTR LTR Gypsy 1 190 -217 4 766 7256 241 72 50 chr3L 23835742 23838584 -704973 + Gypsy2_I LTR Gypsy 1951 4920 -1257 4 766 777 195 0 7 chr3L 23838582 23838737 -704820 + Gypsy2_I LTR Gypsy 5272 5425 -752 4 766 799 210 0 6 chr3L 23838729 23838897 -704660 + Gypsy2_I LTR Gypsy 5540 5706 -471 4 766 608 170 80 88 chr3L 23838913 23839139 -704418 + Gypsy6_LTR LTR Gypsy 72 295 -112 4 766 1033 166 5 31 chr3L 23839813 23840037 -703520 - DNAREP1_DM LINE Penelope -180 414 197 4 766 301 305 43 78 chr3L 23840366 23840736 -702821 - Invader2_I LTR Gypsy -647 3945 3589 4 766 6503 22 1 1 chr3L 23841964 23842752 -700805 + R1_DM LINE R1 4569 5356 0 4 766 1645 176 70 16 chr3L 23843162 23843549 -700008 + DM297_I LTR Gypsy 3511 3918 -2249 4 766 653 130 0 9 chr3L 23843570 23843686 -699871 + DM297_I LTR Gypsy 4019 4133 -2034 4 766 11981 75 18 9 chr3L 23843683 23845504 -698053 + I_DM LINE I 3627 5464 -767 4 766 907 258 92 40 chr3L 23845523 23846602 -696955 + DM297_I LTR Gypsy 4151 5939 -645 4 766 700 235 26 30 chr3L 23846594 23846862 -696695 + DM297_I LTR Gypsy 5455 5721 -391 4 766 27 0 0 0 chr3L 23846988 23847015 -696542 + AT_rich Low_complexity Low_complexity 1 27 0 4 766 512 277 71 5 chr3L 23848210 23848406 -695151 - DIVER2_I LTR Pao -3195 952 744 4 766 20642 21 6 0 chr3L 23849906 23852376 -691181 + DMCR1A LINE CR1 695 3178 -1292 4 766 2472 36 148 6 chr3L 23852381 23852739 -690818 + DMCR1A LINE CR1 3435 3843 -627 4 766 2201 45 3 0 chr3L 23852733 23853022 -690535 + DMCR1A LINE CR1 4181 4470 0 4 766 675 146 0 0 chr3L 23853025 23853155 -690402 + Gypsy8_I LTR Gypsy 1918 2047 -2300 4 766 42 20 0 0 chr3L 23853736 23853785 -689772 + AT_rich Low_complexity Low_complexity 1 49 0 4 767 54 29 0 0 chr3L 23855664 23855732 -687825 + AT_rich Low_complexity Low_complexity 1 68 0 4 767 1186 148 75 16 chr3L 23856493 23856746 -686811 + DMCR1A LINE CR1 2369 2636 -1834 4 767 1609 112 87 4 chr3L 23856762 23857039 -686518 + DMCR1A LINE CR1 2722 3021 -1449 4 767 662 120 19 0 chr3L 23857069 23857177 -686380 + DMCR1A LINE CR1 3291 3400 -1070 4 767 900 154 43 0 chr3L 23857174 23857336 -686221 + DMCR1A LINE CR1 3556 3724 -746 4 767 632 157 0 0 chr3L 23857339 23857447 -686110 + DMCR1A LINE CR1 4017 4124 -346 4 767 387 312 140 13 chr3L 23857454 23857824 -685733 + Gypsy6_I LTR Gypsy 3750 4016 -2996 4 767 299 303 0 0 chr3L 23858769 23858868 -684689 - DIVER2_I LTR Pao -2729 1418 1320 4 767 264 301 38 19 chr3L 23859420 23859579 -683978 - MDG3_I LTR Gypsy -1562 3424 3263 4 767 277 317 58 62 chr3L 23859966 23860526 -683031 - Invader3_I LTR Gypsy -1885 2596 2180 4 767 21 0 0 0 chr3L 23864267 23864288 -679269 + AT_rich Low_complexity Low_complexity 1 21 0 4 767 210 158 0 0 chr3L 23864872 23864910 -678647 + A-rich Low_complexity Low_complexity 1 38 0 4 767 626 99 0 0 chr3L 23864954 23865045 -678512 + DNAREP1_DM LINE Penelope 500 590 -4 4 767 1100 115 51 23 chr3L 23865199 23865413 -678144 + DNAREP1_DM LINE Penelope 1 220 -374 4 767 903 152 55 10 chr3L 23865406 23865606 -677951 + DNAREP1_DM LINE Penelope 124 332 -262 4 767 1501 169 13 132 chr3L 23865606 23866077 -677480 + DNAREP1_DM LINE Penelope 84 498 -96 4 767 523 115 0 210 chr3L 23866088 23866231 -677326 - DNAREP1_DM LINE Penelope -481 113 1 4 767 24 0 0 0 chr3L 23867025 23867049 -676508 + AT_rich Low_complexity Low_complexity 1 24 0 4 767 960 197 151 29 chr3L 23867646 23867991 -675566 + DNAREP1_DM LINE Penelope 1 387 -207 4 767 22 0 0 0 chr3L 23868991 23869013 -674544 + AT_rich Low_complexity Low_complexity 1 22 0 4 767 367 367 28 28 chr3L 23869169 23869601 -673956 - LINEJ1_DM LINE Jockey -406 4614 4183 4 767 3132 282 24 19 chr3L 23870129 23871266 -672291 + Gypsy4_I LTR Gypsy 2137 3278 -3010 4 767 3438 305 12 10 chr3L 23871541 23872996 -670561 + Gypsy4_I LTR Gypsy 3286 4744 -1544 4 767 313 308 50 76 chr3L 23873305 23873646 -669911 + Gypsy4_I LTR Gypsy 5120 5451 -837 4 767 27 0 0 0 chr3L 23873864 23873891 -669666 + AT_rich Low_complexity Low_complexity 1 27 0 4 767 310 71 0 0 chr3L 23874416 23874458 -669099 - DNAREP1_DM LINE Penelope -552 42 1 4 767 819 330 44 12 chr3L 23875077 23875556 -668001 - NOMAD_I LTR Gypsy 0 6572 6079 4 767 1104 309 60 2 chr3L 23876635 23877131 -666426 - NOMAD_I LTR Gypsy -1305 5267 4743 4 767 318 82 58 12 chr3L 23877291 23877377 -666180 + (TA)n Simple_repeat Simple_repeat 2 91 0 4 767 1699 0 0 0 chr3L 23877393 23877591 -665966 - Copia2_LTR_DM LTR Copia 0 198 1 4 767 20327 7 14 2 chr3L 23877591 23879979 -663578 - Copia2_I LTR Copia 0 4162 1746 4 767 7624 10 0 52 chr3L 23879978 23880971 -662586 - Copia2_I LTR Copia -2567 1595 655 4 767 2183 26 0 0 chr3L 23880971 23881237 -662320 + Invader2_LTR LTR Gypsy 1 266 0 4 767 5203 16 30 0 chr3L 23881237 23881876 -661681 - Copia2_I LTR Copia -3504 658 1 4 767 1660 0 5 0 chr3L 23881876 23882073 -661484 - Copia2_LTR_DM LTR Copia 0 198 1 4 767 46 62 0 0 chr3L 23882079 23882160 -661397 + AT_rich Low_complexity Low_complexity 1 81 0 4 767 5709 46 51 28 chr3L 23883350 23884230 -659327 - PROTOP_B DNA P -1 1152 253 4 767 21 89 0 0 chr3L 23884350 23884406 -659151 + AT_rich Low_complexity Low_complexity 1 56 0 4 767 271 177 125 12 chr3L 23884976 23885056 -658501 + MDG1_I LTR Gypsy 981 1069 -5527 4 767 257 176 132 0 chr3L 23885075 23885143 -658414 + MDG1_I LTR Gypsy 1671 1747 -4849 4 767 1355 312 81 8 chr3L 23885222 23885927 -657630 - BEL_I LTR Pao -1998 3406 2651 4 767 712 267 88 8 chr3L 23886052 23886301 -657256 - BEL_I LTR Pao -3039 2365 2097 4 767 894 155 26 5 chr3L 23886453 23886648 -656909 - DOC3_DM LINE Jockey -4 4736 4538 4 767 339 196 167 9 chr3L 23886702 23886810 -656747 - DOC3_DM LINE Jockey -344 4396 4272 4 767 277 250 0 0 chr3L 23886876 23886944 -656613 - DOC3_DM LINE Jockey -1138 3602 3535 4 767 670 241 187 19 chr3L 23886982 23887352 -656205 - DOC3_DM LINE Jockey -2031 2709 2278 4 767 495 233 9 0 chr3L 23887351 23887467 -656090 - DOC3_DM LINE Jockey -2597 2143 2027 4 767 299 143 0 18 chr3L 23887495 23887552 -656005 + Gypsy8_LTR LTR Gypsy 1 56 -248 4 767 426 222 0 100 chr3L 23887598 23887758 -655799 + Gypsy8_LTR LTR Gypsy 161 304 0 4 767 338 205 13 0 chr3L 23887758 23887836 -655721 + Gypsy8_I LTR Gypsy 1 79 -4268 4 767 331 247 6 76 chr3L 23887934 23888105 -655452 + Gypsy8_I LTR Gypsy 68 226 -4121 4 767 679 138 95 68 chr3L 23888612 23888760 -654797 - DNAREP1_DM LINE Penelope 0 594 443 4 767 651 136 8 8 chr3L 23888754 23888873 -654684 - DNAREP1_DM LINE Penelope -257 337 219 4 767 1611 85 73 0 chr3L 23888881 23889139 -654418 - DMCR1A LINE CR1 0 4470 4194 4 767 1491 0 39 0 chr3L 23889139 23889318 -654239 - POGON1 DNA Pogo 0 186 1 4 767 3287 90 115 25 chr3L 23889319 23889877 -653680 - DMCR1A LINE CR1 -276 4194 3587 4 767 771 44 326 0 chr3L 23889874 23890009 -653548 - DMCR1A LINE CR1 -1255 3215 3037 4 767 4329 67 52 0 chr3L 23890015 23890631 -652926 - DMCR1A LINE CR1 -1555 2915 2268 4 767 1581 83 46 0 chr3L 23890638 23890878 -652679 - BS3_DM LINE Jockey -1 1789 1539 4 767 853 56 144 0 chr3L 23890871 23890996 -652561 - BS3_DM LINE Jockey -457 1333 1191 4 767 2331 44 183 0 chr3L 23891007 23891605 -651952 - BS3_DM LINE Jockey -983 807 101 4 767 368 208 0 0 chr3L 23891603 23891680 -651877 - BS2 LINE Jockey -1776 2945 2869 4 767 285 312 0 0 chr3L 23891715 23891811 -651746 - BS2 LINE Jockey -2538 2183 2088 4 767 3577 102 55 14 chr3L 23891815 23892399 -651158 - BS2 LINE Jockey -2741 1980 1373 4 767 2006 95 36 7 chr3L 23892394 23892700 -650857 - BS2 LINE Jockey -4209 512 198 4 767 12428 51 66 12 chr3L 23892696 23894450 -649107 - DMCR1A LINE CR1 -2275 2195 347 4 767 2097 65 10 14 chr3L 23894449 23894743 -648814 + G5A_DM LINE Jockey 2104 2396 -445 4 767 5459 174 25 8 chr3L 23894743 23895815 -647742 - BS2 LINE Jockey -2299 2422 1332 4 767 577 310 35 0 chr3L 23896178 23896436 -647121 + G5_DM LINE Jockey 668 934 -3922 4 767 10758 34 38 4 chr3L 23896433 23897804 -645753 - DMCR1A LINE CR1 -241 4229 2813 4 767 2145 101 106 0 chr3L 23897804 23898162 -645395 - DMCR1A LINE CR1 -488 3982 3587 4 767 609 46 52 37 chr3L 23898159 23898294 -645263 - DMCR1A LINE CR1 -1255 3215 3037 4 767 5291 40 19 30 chr3L 23898300 23899027 -644530 - DMCR1A LINE CR1 -1555 2915 2197 4 767 1972 77 9 19 chr3L 23899014 23899331 -644226 - DMCR1A LINE CR1 -4156 314 1 4 767 302 135 0 0 chr3L 23899478 23899530 -644027 + DNAREP1_DM LINE Penelope 1 52 -542 4 767 450 297 22 22 chr3L 23899629 23899808 -643749 - LINEJ1_DM LINE Jockey -1117 3903 3725 4 767 261 317 40 40 chr3L 23900017 23900165 -643392 - Jockey2 LINE Jockey -1637 1791 1644 4 767 329 187 0 0 chr3L 23900598 23900673 -642884 + I_DM LINE I 2655 2729 -3502 4 767 555 15 0 0 chr3L 23900672 23900738 -642819 + PROTOP_B DNA P 1088 1153 0 4 767 889 192 20 0 chr3L 23901260 23901463 -642094 + I_DM LINE I 2678 2884 -3347 4 767 262 223 161 0 chr3L 23901493 23901605 -641952 + I_DM LINE I 3031 3160 -3071 4 767 312 138 15 15 chr3L 23901615 23901681 -641876 + I_DM LINE I 4086 4151 -2080 4 767 1340 217 58 73 chr3L 23901668 23902135 -641422 + I_DM LINE I 4587 5046 -1185 4 767 815 329 19 12 chr3L 23902465 23902890 -640667 - DIVER2_I LTR Pao -557 3590 3163 4 767 2114 50 116 3 chr3L 23903166 23903484 -640073 + TC1_DM DNA Tc1 158 511 -1155 4 767 1562 46 0 0 chr3L 23903476 23903673 -639884 + TC1_DM DNA Tc1 655 851 -815 4 767 827 35 61 0 chr3L 23903671 23903785 -639772 + TC1_DM DNA Tc1 1036 1156 -510 4 767 398 182 102 0 chr3L 23903790 23903878 -639679 - G3_DM LINE Jockey -4366 239 143 4 767 21 0 0 0 chr3L 23904814 23904835 -638722 + AT_rich Low_complexity Low_complexity 1 21 0 4 767 645 86 0 0 chr3L 23904911 23905004 -638553 - G3_DM LINE Jockey -4512 93 1 4 767 4430 104 24 35 chr3L 23905621 23906415 -637142 - S_DM DNA Tc1 -15 1721 937 4 767 21 57 0 0 chr3L 23906800 23906835 -636722 + AT_rich Low_complexity Low_complexity 1 35 0 4 767 9929 55 53 14 chr3L 23906996 23908404 -635153 + DMCR1A LINE CR1 132 1594 -2876 4 767 2659 61 8 3 chr3L 23908410 23908772 -634785 - Gypsy10_LTR LTR Gypsy 0 364 1 4 767 539 48 0 98 chr3L 23908772 23908864 -634693 - Gypsy10_I LTR Gypsy 0 5278 5196 4 767 16634 183 18 22 chr3L 23909042 23915303 -628254 - Gypsy10_I LTR Gypsy -291 5997 1 4 767 2437 66 9 3 chr3L 23915303 23915639 -627918 - Gypsy10_LTR LTR Gypsy 0 364 27 4 767 3229 69 91 16 chr3L 23915638 23916142 -627415 + DMCR1A LINE CR1 1654 2195 -2275 4 767 2006 95 36 7 chr3L 23916138 23916444 -627113 + BS2 LINE Jockey 198 512 -4209 4 767 3577 102 55 14 chr3L 23916439 23917023 -626534 + BS2 LINE Jockey 1373 1980 -2741 4 767 285 312 0 0 chr3L 23917027 23917123 -626434 + BS2 LINE Jockey 2088 2183 -2538 4 767 368 208 0 0 chr3L 23917158 23917235 -626322 + BS2 LINE Jockey 2869 2945 -1776 4 767 2315 45 183 0 chr3L 23917233 23917831 -625726 + BS3_DM LINE Jockey 101 807 -983 4 767 853 56 144 0 chr3L 23917842 23917967 -625590 + BS3_DM LINE Jockey 1191 1333 -457 4 767 1581 83 46 0 chr3L 23917960 23918200 -625357 + BS3_DM LINE Jockey 1539 1789 -1 4 767 4332 65 52 0 chr3L 23918207 23918823 -624734 + DMCR1A LINE CR1 2268 2915 -1555 4 767 609 40 42 30 chr3L 23918829 23918964 -624593 + DMCR1A LINE CR1 3037 3215 -1255 4 767 4433 98 133 3 chr3L 23918961 23919743 -623814 + DMCR1A LINE CR1 3587 4470 0 4 767 43 64 0 0 chr3L 23920262 23920340 -623217 + AT_rich Low_complexity Low_complexity 1 78 0 4 767 272 0 29 0 chr3L 23921456 23921491 -622066 - PROTOP_B DNA P -614 539 504 4 767 481 156 56 24 chr3L 23921978 23922103 -621454 - DM297_LTR LTR Gypsy 0 414 286 4 767 2358 99 38 20 chr3L 23922267 23922667 -620890 + PROTOP_B DNA P 1 407 -746 4 767 23 33 0 0 chr3L 23923037 23923067 -620490 + AT_rich Low_complexity Low_complexity 1 30 0 4 767 3602 173 117 8 chr3L 23923103 23924083 -619474 + DM297_I LTR Gypsy 3727 4813 -1354 4 767 499 235 0 0 chr3L 23924371 23924486 -619071 + TOM_I LTR Gypsy 5214 5328 -784 4 767 798 47 9 0 chr3L 23924527 23924633 -618924 + Baggins1 LINE LOA 4658 4764 -689 4 767 3647 54 12 8 chr3L 23924623 23925105 -618452 + Baggins1 LINE LOA 4966 5449 -4 4 767 1625 182 76 12 chr3L 23925082 23925504 -618053 - DM297_I LTR Gypsy -3213 2954 2506 4 767 454 105 139 0 chr3L 23925914 23926000 -617557 - DNAREP1_DM LINE Penelope -3 591 494 4 767 1883 41 11 7 chr3L 23926772 23927042 -616515 - DMCR1A LINE CR1 -4199 271 1 4 767 239 43 326 0 chr3L 23928302 23928347 -615210 - DNAREP1_DM LINE Penelope -215 379 320 4 767 1895 48 93 0 chr3L 23928347 23928700 -614857 + ROOA_LTR LTR Pao 1 386 0 4 767 1773 115 48 3 chr3L 23928700 23929010 -614547 - DNAREP1_DM LINE Penelope -270 324 1 4 767 244 257 43 0 chr3L 23929015 23929085 -614472 + PROTOP_A DNA P 78 150 -955 4 767 36 40 0 0 chr3L 23929119 23929169 -614388 + AT_rich Low_complexity Low_complexity 1 50 0 4 767 336 272 0 34 chr3L 23929209 23929327 -614230 - HMSBEAGLE_I LTR Gypsy -2037 4492 4379 4 767 457 278 7 7 chr3L 23929393 23929597 -613960 - HMSBEAGLE_I LTR Gypsy -2249 4280 4106 4 767 538 299 5 0 chr3L 23929805 23930002 -613555 - Gypsy4_I LTR Gypsy -3606 2682 2485 4 767 406 292 20 0 chr3L 23930008 23930155 -613402 - HMSBEAGLE_I LTR Gypsy -3090 3439 3290 4 767 3795 51 137 10 chr3L 23930503 23931186 -612371 + DOC3_DM LINE Jockey 62 831 -3909 4 767 1960 31 236 0 chr3L 23931184 23931573 -611984 + DOC3_DM LINE Jockey 1000 1480 -3260 4 767 970 17 0 0 chr3L 23931572 23931687 -611870 + DOC3_DM LINE Jockey 2447 2561 -2179 4 767 11944 27 35 1 chr3L 23931690 23933198 -610359 + DOC3_DM LINE Jockey 3054 4612 -128 4 767 352 105 66 0 chr3L 23933206 23933282 -610275 + DMCR1A LINE CR1 185 265 -4205 4 767 2086 71 0 0 chr3L 23933287 23933570 -609987 + DMCR1A LINE CR1 430 712 -3758 4 767 373 143 0 0 chr3L 23933569 23933639 -609918 + Transib-N1_DM DNA Transib 436 505 -9 4 767 409 170 0 33 chr3L 23934238 23934329 -609228 + SAR_DM Satellite Satellite 565 652 -820 4 767 265 282 0 0 chr3L 23934413 23934491 -609066 - Gypsy8_I LTR Gypsy -1997 2350 2273 4 767 503 66 105 0 chr3L 23935568 23935643 -607914 - DNAREP1_DM LINE Penelope -3 591 509 4 767 2824 12 0 0 chr3L 23935643 23935973 -607584 - TRANSPAC_LTR LTR Gypsy 0 330 1 4 767 38760 2 0 0 chr3L 23935972 23940562 -602995 - TRANSPAC_I LTR Gypsy 0 4590 1 4 767 2824 12 0 0 chr3L 23940562 23940892 -602665 - TRANSPAC_LTR LTR Gypsy 0 330 1 4 767 456 105 90 26 chr3L 23940903 23940981 -602576 - DNAREP1_DM LINE Penelope -107 487 405 4 767 370 136 0 0 chr3L 23941022 23941088 -602469 - DNAREP1_DM LINE Penelope -156 438 373 4 767 378 161 11 0 chr3L 23941103 23941190 -602367 - DNAREP1_DM LINE Penelope -299 295 208 4 767 505 84 0 0 chr3L 23941255 23941326 -602231 - DNAREP1_DM LINE Penelope -523 71 1 4 767 22 0 0 0 chr3L 23941382 23941404 -602153 + AT_rich Low_complexity Low_complexity 1 22 0 4 767 376 271 9 9 chr3L 23942496 23942604 -600953 + IVK_DM LINE I 521 628 -4774 4 767 466 316 10 5 chr3L 23942605 23942799 -600758 + IVK_DM LINE I 816 1010 -4392 4 767 971 131 87 39 chr3L 23942831 23943061 -600496 + DNAREP1_DM LINE Penelope 92 332 -262 4 767 584 129 0 10 chr3L 23943031 23943133 -600424 + DNAREP1_DM LINE Penelope 175 275 -319 4 767 10004 37 43 0 chr3L 23943124 23944380 -599177 + PROTOP DNA P 639 1948 -2532 4 767 15686 26 45 6 chr3L 23944389 23946300 -597257 + PROTOP DNA P 2495 4480 0 4 767 500 129 0 31 chr3L 23946300 23946395 -597162 + G4_DM LINE Jockey 3765 3856 0 4 767 823 276 116 5 chr3L 23947213 23947643 -595914 + BS3_DM LINE Jockey 2334 2811 -1910 4 767 5156 76 70 2 chr3L 23947678 23948436 -595121 + BS3_DM LINE Jockey 155 873 -917 4 767 3166 42 261 2 chr3L 23948436 23948912 -594645 + BS3_DM LINE Jockey 1191 1789 -1 4 767 880 197 178 0 chr3L 23948992 23949205 -594352 + DM297_I LTR Gypsy 502 752 -5415 4 767 4629 146 4 3 chr3L 23949250 23950006 -593551 - FW_DM LINE Jockey -1353 3339 2583 4 767 3341 137 63 14 chr3L 23949979 23950671 -592886 - FW_DM LINE Jockey -2234 2458 1642 4 767 225 0 0 0 chr3L 23950686 23950711 -592846 + (TTTAG)n Simple_repeat Simple_repeat 3 27 0 4 767 2868 148 194 44 chr3L 23950721 23951864 -591693 - FW_DM LINE Jockey -3294 1398 85 4 767 22 56 0 0 chr3L 23951968 23952004 -591553 + AT_rich Low_complexity Low_complexity 1 36 0 4 767 659 295 96 7 chr3L 23952577 23952914 -590643 + HMSBEAGLE_I LTR Gypsy 4106 4447 -2082 4 767 623 191 0 0 chr3L 23953014 23953129 -590428 - PROTOP_B DNA P -953 200 86 4 767 307 167 0 0 chr3L 23953158 23953218 -590339 + DNAREP1_DM LINE Penelope 129 188 -406 4 767 1069 143 163 0 chr3L 23953235 23953438 -590119 + DNAREP1_DM LINE Penelope 273 508 -86 4 767 1561 78 155 16 chr3L 23953426 23953780 -589777 + DMTOM1_LTR LTR Gypsy 8 410 0 4 767 730 53 0 40 chr3L 23953780 23953879 -589678 + DNAREP1_DM LINE Penelope 500 594 0 4 767 1783 175 102 12 chr3L 23953940 23954582 -588975 + DM297_I LTR Gypsy 2231 3019 -3148 4 767 228 220 51 0 chr3L 23954588 23954647 -588910 + TOM_I LTR Gypsy 2998 3059 -3053 4 767 649 329 44 34 chr3L 23954820 23955295 -588262 + G6_DM LINE Jockey 874 1353 -689 4 767 241 91 0 0 chr3L 23955332 23955365 -588192 + Transib5 DNA Transib 3 35 -2966 4 767 2388 87 25 36 chr3L 23955366 23955758 -587799 + Transib5 DNA Transib 203 590 -2411 4 767 1938 25 13 0 chr3L 23955758 23955993 -587564 + Transib5 DNA Transib 1996 2233 -768 4 767 694 345 41 29 chr3L 23956144 23956730 -586827 + G_DM LINE Jockey 350 942 -2160 4 767 1675 300 110 63 chr3L 23956844 23958706 -584851 + G_DM LINE Jockey 1149 4195 -151 4 767 5599 169 92 20 chr3L 23958705 23959036 -584521 + DM297_I LTR Gypsy 3272 3616 -2551 4 767 186 71 0 0 chr3L 23959036 23959064 -584493 + (TATAA)n Simple_repeat Simple_repeat 2 29 0 4 767 5599 198 134 18 chr3L 23959064 23960122 -583435 + DM297_I LTR Gypsy 3617 4813 -1354 4 767 327 268 34 63 chr3L 23960334 23960509 -583048 + DM297_I LTR Gypsy 5222 5391 -721 4 767 664 266 4 21 chr3L 23960524 23960766 -582791 + DM297_I LTR Gypsy 5485 5722 -390 4 767 238 299 56 28 chr3L 23960768 23961019 -582538 + DM297_I LTR Gypsy 5841 6098 -69 4 767 850 129 93 0 chr3L 23961035 23961174 -582383 - DNAREP1_DM LINE Penelope -149 445 294 4 767 472 259 20 0 chr3L 23961417 23961564 -581993 + P_DG DNA P 2739 2888 0 4 767 2140 97 42 95 chr3L 23961433 23961935 -581622 - DNAREP1_DM LINE Penelope 0 594 1 4 767 737 212 78 11 chr3L 23961953 23962144 -581413 - Gypsy12A_LTR LTR Gypsy 0 2280 2077 4 767 256 159 0 0 chr3L 23962377 23962421 -581136 - Gypsy8_I LTR Gypsy -4303 44 1 4 767 280 269 99 89 chr3L 23962486 23963102 -580455 - Gypsy12A_LTR LTR Gypsy -667 1613 1000 4 767 419 252 17 17 chr3L 23963620 23963737 -579820 + Copia2_I LTR Copia 116 232 -3930 4 767 359 332 43 8 chr3L 23963813 23964071 -579486 + Copia2_I LTR Copia 966 1232 -2930 4 767 1750 111 0 0 chr3L 23964091 23964334 -579223 - DMRT1B LINE R1 -91 5092 4850 4 767 4254 123 31 3 chr3L 23964332 23964985 -578572 - DMRT1B LINE R1 -589 4594 3924 4 767 1030 69 189 0 chr3L 23964982 23965141 -578416 - DMRT1B LINE R1 -1756 3427 3239 4 767 6134 125 91 2 chr3L 23965141 23966456 -577101 - DMRT1B LINE R1 -2261 2922 1492 4 767 1113 306 35 14 chr3L 23966587 23967018 -576539 + Copia2_I LTR Copia 3164 3603 -559 4 767 275 320 0 0 chr3L 23967082 23967182 -576375 + Copia2_I LTR Copia 3707 3806 -356 4 767 326 298 21 14 chr3L 23967207 23967350 -576207 + Copia2_I LTR Copia 3912 4055 -107 4 767 622 144 35 18 chr3L 23967811 23967924 -575633 + DNAREP1_DM LINE Penelope 2 116 -478 4 767 252 229 191 0 chr3L 23967934 23968026 -575531 + DNAREP1_DM LINE Penelope 5 116 -478 4 767 1224 184 45 71 chr3L 23968026 23968414 -575143 + DNAREP1_DM LINE Penelope 1 295 -299 4 767 638 139 90 48 chr3L 23968409 23968575 -574982 - Gypsy12A_LTR LTR Gypsy -510 1770 1598 4 767 6025 6 0 0 chr3L 23968583 23969241 -574316 + QUASIMODO_LTR LTR Gypsy 1 658 0 4 767 997 187 104 67 chr3L 23969241 23969539 -574018 - Gypsy12A_LTR LTR Gypsy -667 1613 1305 4 767 1836 105 185 9 chr3L 23969552 23969887 -573670 - Gypsy12A_LTR LTR Gypsy -1886 394 1 4 767 33 56 0 0 chr3L 23969887 23969941 -573616 + AT_rich Low_complexity Low_complexity 1 54 0 4 767 244 45 87 43 chr3L 23969999 23970045 -573512 + BARI1 DNA Tc1 52 99 -1651 4 767 260 100 0 0 chr3L 23970044 23970084 -573473 - BARI1 DNA Tc1 -1669 81 42 4 767 585 210 31 57 chr3L 23970082 23970274 -573283 + DMCR1A LINE CR1 2445 2631 -1839 4 767 1054 180 53 0 chr3L 23970294 23970500 -573057 - DNAREP1_DM LINE Penelope -104 490 274 4 767 10253 54 48 1 chr3L 23970497 23971816 -571741 + DMRT1A LINE R1 3509 4888 -295 4 767 1029 73 0 0 chr3L 23971814 23971950 -571607 + DMRT1A LINE R1 5043 5178 -5 4 767 572 122 127 27 chr3L 23972087 23972197 -571360 - DNAREP1_DM LINE Penelope 0 594 474 4 767 494 50 0 0 chr3L 23972438 23972498 -571059 - DNAREP1_DM LINE Penelope 0 594 535 4 767 9039 26 9 0 chr3L 23972851 23973890 -569667 + FW_DM LINE Jockey 1 1048 -3644 4 767 29752 10 23 1 chr3L 23973891 23977304 -566253 + FW_DM LINE Jockey 1204 4690 -2 4 767 1440 175 214 19 chr3L 23977301 23977614 -565943 + DMCR1A LINE CR1 3286 3659 -811 4 767 360 267 36 43 chr3L 23977628 23977810 -565747 - IDEFIX_I LTR Gypsy -2960 2668 2510 4 767 30 0 0 0 chr3L 23977962 23977992 -565565 + AT_rich Low_complexity Low_complexity 1 30 0 4 767 1288 156 139 56 chr3L 23978071 23978430 -565127 - DNAREP1_DM LINE Penelope 0 594 206 4 767 610 183 6 36 chr3L 23978766 23978942 -564615 - DNAREP1_DM LINE Penelope -264 330 141 4 767 815 229 63 42 chr3L 23978930 23979217 -564340 - DNAREP1_DM LINE Penelope -301 293 1 4 767 34 0 0 0 chr3L 23979412 23979446 -564111 + AT_rich Low_complexity Low_complexity 1 34 0 4 767 1600 153 135 22 chr3L 23979946 23980383 -563174 - DNAREP1_DM LINE Penelope -1 593 1 4 767 944 167 133 5 chr3L 23980385 23980596 -562961 + DM297_I LTR Gypsy 2735 2972 -3195 4 767 320 158 156 13 chr3L 23980594 23980671 -562886 + DM297_I LTR Gypsy 3196 3283 -2884 4 767 3466 197 183 7 chr3L 23980678 23981599 -561958 + DM297_I LTR Gypsy 3724 4813 -1354 4 767 671 247 86 49 chr3L 23981691 23982200 -561357 + DM297_I LTR Gypsy 5353 5858 -726 4 767 25 51 0 0 chr3L 23982306 23982345 -561212 + AT_rich Low_complexity Low_complexity 1 39 0 4 767 850 129 93 0 chr3L 23982469 23982608 -560949 - DNAREP1_DM LINE Penelope -149 445 294 4 767 472 259 20 0 chr3L 23982851 23982998 -560559 + P_DG DNA P 2739 2888 0 4 767 2140 97 42 95 chr3L 23982867 23983369 -560188 - DNAREP1_DM LINE Penelope 0 594 1 4 767 714 218 79 11 chr3L 23983387 23983577 -559980 - Gypsy12A_LTR LTR Gypsy 0 2280 2078 4 767 256 159 0 0 chr3L 23983811 23983855 -559702 - Gypsy8_I LTR Gypsy -4303 44 1 4 767 243 269 66 42 chr3L 23983920 23984087 -559470 - Gypsy12A_LTR LTR Gypsy -667 1613 1443 4 767 34 24 0 0 chr3L 23984169 23984210 -559347 + AT_rich Low_complexity Low_complexity 1 41 0 4 95 42333 8 2 0 chr3L 23984229 23988912 -554645 + FW_DM LINE Jockey 3 4691 -1 4 768 512 210 156 27 chr3L 23989016 23989241 -554316 - Gypsy12A_LTR LTR Gypsy -1027 1253 1000 4 768 419 252 17 17 chr3L 23989759 23989876 -553681 + Copia2_I LTR Copia 116 232 -3930 4 768 352 338 42 8 chr3L 23989945 23990210 -553347 + Copia2_I LTR Copia 959 1232 -2930 4 768 1750 111 0 0 chr3L 23990230 23990473 -553084 - DMRT1B LINE R1 -91 5092 4850 4 768 4247 123 31 3 chr3L 23990471 23991124 -552433 - DMRT1B LINE R1 -589 4594 3924 4 768 1030 69 189 0 chr3L 23991121 23991280 -552277 - DMRT1B LINE R1 -1756 3427 3239 4 768 4322 127 94 4 chr3L 23991280 23992544 -551013 - DMRT1B LINE R1 -2261 2922 1492 4 768 653 316 52 14 chr3L 23992675 23992964 -550593 + Copia2_I LTR Copia 3164 3463 -699 4 768 1012 304 69 17 chr3L 23992964 23993429 -550128 + Copia2_I LTR Copia 3567 4055 -107 4 768 19904 50 78 5 chr3L 23993772 23998853 -544704 + Baggins1 LINE LOA 1 5453 0 4 768 822 271 112 61 chr3L 23998962 23999437 -544120 - BEL_I LTR Pao -4638 766 268 4 768 743 231 66 5 chr3L 23999779 23999992 -543565 + DNAREP1_DM LINE Penelope 46 271 -323 4 768 523 131 152 3 chr3L 24000002 24000166 -543391 + DNAREP1_DM LINE Penelope 145 332 -262 4 768 481 240 0 24 chr3L 24000211 24000335 -543222 - Invader3_LTR LTR Gypsy -84 214 94 4 768 2381 142 22 40 chr3L 24000402 24000902 -542655 + DMCR1A LINE CR1 3854 4344 -126 4 768 42 48 0 0 chr3L 24000909 24000972 -542585 + AT_rich Low_complexity Low_complexity 1 63 0 4 768 24 53 0 0 chr3L 24001181 24001219 -542338 + AT_rich Low_complexity Low_complexity 1 38 0 4 768 228 234 116 39 chr3L 24004028 24004157 -539400 - Gypsy8_LTR LTR Gypsy -163 141 3 4 768 248 234 0 0 chr3L 24004335 24004399 -539158 - DMCR1A LINE CR1 -3533 937 874 4 768 888 167 162 29 chr3L 24004635 24004875 -538682 - DNAREP1_DM LINE Penelope -23 571 300 4 768 3766 0 0 0 chr3L 24005560 24005988 -537569 - ROO_LTR LTR Pao 0 428 1 4 768 12691 0 10 0 chr3L 24005988 24007492 -536065 - ROO_I LTR Pao 0 8256 6738 4 768 50426 0 2 0 chr3L 24007492 24013415 -530142 - ROO_I LTR Pao -2320 5936 1 4 768 3766 0 0 0 chr3L 24013415 24013843 -529714 - ROO_LTR LTR Pao 0 428 1 4 768 8786 21 9 2 chr3L 24014435 24015532 -528025 + PROTOP_A DNA P 1 1105 0 4 768 350 111 32 0 chr3L 24015884 24015947 -527610 + DNAREP1_DM LINE Penelope 182 246 -348 4 768 38861 3 0 0 chr3L 24015953 24020465 -523092 + FW_DM LINE Jockey 181 4692 0 4 768 431 211 9 0 chr3L 24020461 24020570 -522987 + PROTOP DNA P 1490 1599 -2881 4 768 530 222 82 19 chr3L 24020586 24020793 -522764 + PROTOP_A DNA P 683 902 -203 4 768 189 234 0 0 chr3L 24022733 24022797 -520760 + (TATATG)n Simple_repeat Simple_repeat 6 69 0 4 768 23 54 0 0 chr3L 24022797 24022834 -520723 + AT_rich Low_complexity Low_complexity 1 37 0 4 768 372 253 109 29 chr3L 24022854 24023029 -520528 + DNAREP1_DM LINE Penelope 363 551 -43 4 768 234 206 61 20 chr3L 24023244 24023343 -520214 - DNAREP1_DM LINE Penelope -288 306 204 4 768 23 0 0 0 chr3L 24023823 24023846 -519711 + AT_rich Low_complexity Low_complexity 1 23 0 4 768 1826 124 14 10 chr3L 24024111 24024481 -519076 + DNAREP1_DM LINE Penelope 1 324 -270 4 768 535 160 10 10 chr3L 24024622 24024723 -518834 - PROTOP_A DNA P -1002 103 3 4 768 4635 41 28 0 chr3L 24025015 24025629 -517928 - TC1_DM DNA Tc1 0 1666 1036 4 768 4030 53 7 14 chr3L 24025627 24026391 -517166 - TC1_DM DNA Tc1 -815 851 1 4 768 1482 138 154 0 chr3L 24026405 24026730 -516827 + MINOS DNA Tc1 1262 1636 -139 4 768 241 88 0 0 chr3L 24026771 24026805 -516752 - MINOS DNA Tc1 -1730 45 12 4 768 1305 32 0 0 chr3L 24026826 24026984 -516573 - PROTOP_A DNA P 0 1105 948 4 768 4078 47 42 55 chr3L 24026979 24027649 -515908 - PROTOP_A DNA P -444 661 1 4 768 54 16 0 0 chr3L 24028465 24028526 -515031 + AT_rich Low_complexity Low_complexity 1 61 0 4 768 22 56 0 0 chr3L 24029512 24029548 -514009 + AT_rich Low_complexity Low_complexity 1 36 0 4 768 527 75 25 0 chr3L 24030395 24030475 -513082 + G3_DM LINE Jockey 1 82 -4523 4 768 643 204 305 43 chr3L 24031458 24031804 -511753 + G3_DM LINE Jockey 143 579 -4026 4 768 299 287 0 0 chr3L 24031876 24031977 -511580 - DIVER2_I LTR Pao -1624 2523 2423 4 768 545 359 45 39 chr3L 24032976 24033767 -509790 - DIVER2_I LTR Pao -1758 2389 1594 4 768 225 83 0 0 chr3L 24034242 24034278 -509279 + (TTTTA)n Simple_repeat Simple_repeat 5 40 0 4 768 1691 311 35 27 chr3L 24034449 24035195 -508362 + Gypsy6_I LTR Gypsy 919 1670 -5342 4 768 1918 271 32 7 chr3L 24035176 24035764 -507793 + Gypsy6_I LTR Gypsy 2218 2758 -4254 4 768 4063 251 27 25 chr3L 24035777 24036926 -506631 + Gypsy3_I LTR Gypsy 2342 3492 -2685 4 768 277 351 0 0 chr3L 24040658 24040869 -502688 + Invader3_I LTR Gypsy 4059 4193 -695 4 768 4842 261 34 15 chr3L 24041627 24043197 -500360 + Gypsy6_I LTR Gypsy 3278 5318 -1694 4 768 708 259 93 20 chr3L 24043205 24043453 -500104 + Gypsy6_I LTR Gypsy 5722 5987 -1025 4 768 1837 89 11 4 chr3L 24043449 24043720 -499837 + Gypsy6A_LTR LTR Gypsy 148 420 0 4 768 2220 72 137 27 chr3L 24044313 24044700 -498857 + BS3_DM LINE Jockey 1362 1790 0 4 768 11661 141 68 17 chr3L 24044978 24047243 -496314 - DMCR1A LINE CR1 -175 4295 1915 4 768 1593 172 248 27 chr3L 24047879 24048450 -495107 - DMCR1A LINE CR1 -3594 876 167 4 768 198 0 0 0 chr3L 24048450 24048472 -495085 + (TA)n Simple_repeat Simple_repeat 2 23 0 4 768 1593 195 103 27 chr3L 24048472 24048632 -494925 - DMCR1A LINE CR1 -4304 166 6 4 768 322 271 25 0 chr3L 24048640 24048758 -494799 + TV1I LTR Gypsy 3043 3163 -2800 4 768 1332 65 11 5 chr3L 24048772 24048957 -494600 - NINJA_LTR LTR Pao -1 316 131 4 768 1991 35 4 0 chr3L 24048956 24049213 -494344 - NINJA_I LTR Pao -1664 4347 4090 4 768 19810 29 30 19 chr3L 24049205 24051851 -491706 - NINJA_I LTR Pao -3160 2851 177 4 768 356 144 47 35 chr3L 24052292 24052378 -491179 + Transib-N1_DM DNA Transib 21 107 -407 4 768 273 271 49 49 chr3L 24052646 24052809 -490748 + Invader3_I LTR Gypsy 1224 1386 -3502 4 768 252 262 0 12 chr3L 24052925 24053006 -490551 + MDG3_I LTR Gypsy 2263 2342 -2644 4 768 764 299 115 19 chr3L 24053044 24053908 -489649 + MDG3_I LTR Gypsy 2488 3444 -1542 4 768 2110 59 14 0 chr3L 24053883 24054172 -489385 + Invader4_LTR LTR Gypsy 54 346 0 4 768 2004 47 0 0 chr3L 24054172 24054423 -489134 + Invader4_I LTR Gypsy 1 251 -2162 4 768 814 165 124 87 chr3L 24054423 24054721 -488836 + TIRANT_LTR LTR Gypsy 1 309 -108 4 768 357 187 11 42 chr3L 24054875 24054970 -488587 + TIRANT_I LTR Gypsy 1 92 -7600 4 768 2091 249 102 73 chr3L 24055083 24056221 -487336 + TIRANT_I LTR Gypsy 228 1398 -6294 4 768 34786 174 11 1 chr3L 24056386 24062622 -480935 + TIRANT_I LTR Gypsy 1394 7692 0 4 768 909 176 80 90 chr3L 24062622 24062934 -480623 + TIRANT_LTR LTR Gypsy 1 309 -108 4 768 5683 107 21 13 chr3L 24063088 24064039 -479518 + Invader4_I LTR Gypsy 248 1205 -1981 4 768 1863 65 3 21 chr3L 24064029 24064314 -479243 + Invader4_I LTR Gypsy 1021 1300 -1113 4 768 2885 86 96 6 chr3L 24064330 24064823 -478734 + Invader4_I LTR Gypsy 1299 1757 -2342 4 768 1836 31 0 0 chr3L 24064820 24065042 -478515 + PROTOP DNA P 4259 4480 0 4 768 241 88 0 0 chr3L 24065063 24065097 -478460 + MINOS DNA Tc1 12 45 -1730 4 768 1454 145 154 0 chr3L 24065138 24065463 -478094 - MINOS DNA Tc1 -139 1636 1262 4 768 3919 57 8 16 chr3L 24065477 24066274 -477283 + TC1_DM DNA Tc1 1 883 -783 4 768 319 279 65 62 chr3L 24066540 24066815 -476742 + TV1I LTR Gypsy 3618 3893 -2070 4 768 1040 134 6 14 chr3L 24066847 24067055 -476502 - DNAREP1_DM LINE Penelope -260 334 2 4 768 1100 112 176 0 chr3L 24067666 24067905 -475652 + DNAREP1_DM LINE Penelope 1 281 -313 4 768 496 111 0 0 chr3L 24067895 24067967 -475590 + DNAREP1_DM LINE Penelope 400 471 -123 4 768 1435 110 12 16 chr3L 24068002 24068260 -475297 - DNAREP1_DM LINE Penelope -337 257 1 4 768 21 0 0 0 chr3L 24068359 24068380 -475177 + AT_rich Low_complexity Low_complexity 1 21 0 4 768 275 351 0 0 chr3L 24069150 24069264 -474293 + G5_DM LINE Jockey 1012 1125 -3731 4 768 22 0 0 0 chr3L 24069264 24069286 -474271 + AT_rich Low_complexity Low_complexity 1 22 0 4 768 267 290 10 10 chr3L 24071941 24072042 -471515 + G5A_DM LINE Jockey 2281 2381 -460 4 768 360 264 9 9 chr3L 24072133 24072240 -471317 + G5A_DM LINE Jockey 2581 2687 -154 4 768 229 192 61 110 chr3L 24073143 24073225 -470332 + BURDOCK_LTR LTR Gypsy 133 210 -65 4 768 28 0 0 0 chr3L 24073321 24073349 -470208 + AT_rich Low_complexity Low_complexity 1 28 0 4 768 256 269 46 0 chr3L 24073655 24073763 -469794 + Gypsy7_I LTR Gypsy 355 467 -4517 4 768 2360 223 49 69 chr3L 24073756 24074538 -469019 + Gypsy7_I LTR Gypsy 655 1420 -3564 4 768 602 161 380 23 chr3L 24074548 24074764 -468793 + Gypsy7_I LTR Gypsy 1598 1890 -3094 4 768 548 185 74 0 chr3L 24074862 24074970 -468587 + BURDOCK_I LTR Gypsy 2211 2326 -3534 4 768 2705 231 43 3 chr3L 24074972 24075688 -467869 + BURDOCK_I LTR Gypsy 2449 3193 -2667 4 768 3399 206 74 4 chr3L 24075687 24076493 -467064 + Gypsy7_I LTR Gypsy 3053 3915 -1069 4 768 1087 252 53 88 chr3L 24076494 24076950 -466607 + Gypsy7_I LTR Gypsy 4147 4586 -398 4 768 278 358 47 18 chr3L 24076964 24077557 -466000 + Gypsy10_I LTR Gypsy 3812 4841 -437 4 768 429 48 0 60 chr3L 24078082 24078149 -465408 - DMTOM1_LTR LTR Gypsy -214 196 134 4 768 33 0 0 0 chr3L 24078157 24078190 -465367 + AT_rich Low_complexity Low_complexity 1 33 0 4 768 35 63 0 0 chr3L 24078524 24078587 -464970 + AT_rich Low_complexity Low_complexity 1 63 0 4 768 31 68 0 0 chr3L 24078930 24078989 -464568 + AT_rich Low_complexity Low_complexity 1 59 0 4 768 22 35 0 0 chr3L 24080578 24080607 -462950 + AT_rich Low_complexity Low_complexity 1 29 0 4 768 23 0 0 0 chr3L 24081815 24081838 -461719 + AT_rich Low_complexity Low_complexity 1 23 0 4 768 367 326 117 10 chr3L 24082139 24082533 -461024 - DIVER2_I LTR Pao -2016 2131 1696 4 768 410 364 0 0 chr3L 24082830 24083025 -460532 - DIVER2_I LTR Pao -2626 1521 1327 4 768 300 246 0 0 chr3L 24083166 24083235 -460322 - DIVER2_I LTR Pao -3159 988 920 4 768 340 148 398 0 chr3L 24083295 24083403 -460154 - DMCR1A LINE CR1 -2 4468 4318 4 768 376 143 0 0 chr3L 24083404 24083474 -460083 - DMCR1A LINE CR1 -454 4016 3947 4 768 374 141 210 10 chr3L 24083471 24083571 -459986 - DMCR1A LINE CR1 -772 3698 3579 4 768 23 0 0 0 chr3L 24083626 24083649 -459908 + AT_rich Low_complexity Low_complexity 1 23 0 4 768 1729 129 18 77 chr3L 24083705 24084105 -459452 - DNAREP1_DM LINE Penelope -262 332 1 4 768 3437 170 161 13 chr3L 24084135 24085054 -458503 - DMCR1A LINE CR1 -261 4209 3155 4 768 646 121 26 8 chr3L 24085057 24085174 -458383 - DMCR1A LINE CR1 -1455 3015 2897 4 768 685 151 196 27 chr3L 24085175 24085359 -458198 - DMCR1A LINE CR1 -1906 2564 2350 4 768 1398 141 3 56 chr3L 24085372 24085657 -457900 - DMCR1A LINE CR1 -2235 2235 1966 4 768 794 180 185 5 chr3L 24085661 24085856 -457701 - DMCR1A LINE CR1 -2649 1821 1592 4 768 1697 138 41 19 chr3L 24085846 24086392 -457165 - DNAREP1_DM LINE Penelope -171 423 2 4 768 300 169 0 0 chr3L 24086384 24086443 -457114 - DMCR1A LINE CR1 -3095 1375 1317 4 768 1217 47 6 0 chr3L 24086538 24086708 -456849 - TC1_DM DNA Tc1 -1473 193 23 4 768 2269 29 4 0 chr3L 24086714 24086992 -456565 - Gypsy4_LTR LTR Gypsy -8 279 1 4 768 20146 14 8 0 chr3L 24086992 24089413 -454144 - Gypsy4_I LTR Gypsy 0 6288 3850 4 768 10850 10 16 0 chr3L 24089413 24090703 -452854 - Gypsy4_I LTR Gypsy -2557 3731 2421 4 768 38963 5 16 0 chr3L 24091389 24096004 -447553 - FW_DM LINE Jockey 0 4692 2 4 768 696 35 0 0 chr3L 24097445 24097531 -446026 - STALKER4_LTR LTR Gypsy -316 86 1 4 768 19295 17 20 5 chr3L 24099903 24102292 -441265 - Gypsy4_I LTR Gypsy -3863 2425 1 4 768 2343 31 3 0 chr3L 24102292 24102578 -440979 - Gypsy4_LTR LTR Gypsy 0 287 1 4 768 243 0 0 0 chr3L 24102680 24102707 -440850 + (TC)n Simple_repeat Simple_repeat 2 28 0 4 768 995 101 73 112 chr3L 24103266 24103499 -440058 + DNAREP1_DM LINE Penelope 265 488 -106 4 768 1742 132 49 78 chr3L 24103500 24103926 -439631 - DM297_LTR LTR Gypsy 0 414 1 4 768 10801 72 97 10 chr3L 24103927 24107333 -436224 - DM297_I LTR Gypsy -1 6166 2465 4 768 3238 21 0 0 chr3L 24107333 24107718 -435839 - DIVER2_LTR LTR Pao 0 385 1 4 768 22029 29 37 14 chr3L 24107718 24110580 -432977 - DIVER2_I LTR Pao 0 4147 1220 4 768 1532 40 285 3 chr3L 24110560 24110862 -432695 - DIVER2_I LTR Pao -3327 820 434 4 768 1931 63 0 0 chr3L 24111106 24111361 -432196 - DIVER2_I LTR Pao -3708 439 185 4 768 189 121 0 0 chr3L 24111361 24111394 -432163 + (TATG)n Simple_repeat Simple_repeat 3 35 0 4 768 1177 40 0 0 chr3L 24111394 24111545 -432012 - DIVER2_I LTR Pao -3996 151 1 4 768 3051 26 0 38 chr3L 24111546 24111943 -431614 - DIVER2_LTR LTR Pao -1 384 3 4 768 3571 76 60 0 chr3L 24111947 24112498 -431059 - DM297_I LTR Gypsy -3714 2453 1870 4 768 4685 81 69 1 chr3L 24112500 24113341 -430216 - DM297_I LTR Gypsy -4836 1331 434 4 768 296 203 0 0 chr3L 24113595 24113659 -429898 - G5_DM LINE Jockey -1452 3404 3341 4 768 552 346 31 12 chr3L 24113721 24114040 -429517 - G5_DM LINE Jockey -1646 3210 2886 4 768 717 292 159 10 chr3L 24114256 24114647 -428910 - G5_DM LINE Jockey -2220 2636 2188 4 768 227 240 13 39 chr3L 24114992 24115070 -428487 + NOMAD_I LTR Gypsy 4798 4873 -1699 4 768 260 373 5 5 chr3L 24115187 24115373 -428184 + NOMAD_I LTR Gypsy 5107 5292 -1280 4 768 355 253 12 76 chr3L 24115457 24115628 -427929 + NOMAD_I LTR Gypsy 5419 5578 -994 4 768 248 333 78 0 chr3L 24115863 24115965 -427592 + NOMAD_I LTR Gypsy 5928 6037 -535 4 768 289 278 0 0 chr3L 24116470 24116560 -426997 - Invader6_I LTR Gypsy -848 3251 3162 4 768 723 178 0 13 chr3L 24116948 24117107 -426450 + BS2 LINE Jockey 86 242 -4479 4 11 599 225 0 0 chr3L 24117170 24117321 -426236 + G6_DM LINE Jockey 419 569 -1473 4 769 2069 248 0 0 chr3L 24117328 24117836 -425721 + G6_DM LINE Jockey 787 1294 -748 4 769 14509 157 39 18 chr3L 24117839 24120675 -422882 + G_DM LINE Jockey 1385 4281 -65 4 769 6329 122 61 4 chr3L 24120857 24121907 -421650 + GTWIN_I LTR Gypsy 3811 4920 -1501 4 769 5451 185 21 42 chr3L 24121909 24123068 -420489 + GTWIN_I LTR Gypsy 5284 6417 -4 4 769 1830 154 32 27 chr3L 24123170 24123544 -420013 + GTWIN_LTR LTR Gypsy 60 435 -60 4 769 25 0 0 0 chr3L 24124234 24124259 -419298 + AT_rich Low_complexity Low_complexity 1 25 0 4 769 289 257 0 0 chr3L 24124953 24125023 -418534 - DIVER2_I LTR Pao -3158 989 920 4 769 308 109 0 18 chr3L 24125082 24125138 -418419 - DMCR1A LINE CR1 -1 4469 4415 4 769 376 143 0 0 chr3L 24125194 24125264 -418293 - DMCR1A LINE CR1 -454 4016 3947 4 769 373 144 200 9 chr3L 24125261 24125366 -418191 - DMCR1A LINE CR1 -772 3698 3574 4 769 35 0 0 0 chr3L 24125375 24125410 -418147 + AT_rich Low_complexity Low_complexity 1 35 0 4 769 5033 13 0 0 chr3L 24125410 24126006 -417551 - QUASIMODO_LTR LTR Gypsy 0 658 63 4 769 44647 2 0 0 chr3L 24126002 24131157 -412400 - DMRT1A LINE R1 -28 5155 1 4 769 523 14 0 28 chr3L 24131167 24131238 -412319 - QUASIMODO_LTR LTR Gypsy -589 69 1 4 769 49076 11 6 1 chr3L 24131238 24137265 -406292 - QUASIMODO_I LTR Gypsy 0 6060 1 4 769 4798 28 22 8 chr3L 24137265 24137886 -405671 - QUASIMODO_LTR LTR Gypsy 0 658 29 4 769 343 25 99 0 chr3L 24137888 24137969 -405588 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 769 23 0 0 0 chr3L 24137990 24138013 -405544 + AT_rich Low_complexity Low_complexity 1 23 0 4 769 1742 125 18 77 chr3L 24138069 24138469 -405088 - DNAREP1_DM LINE Penelope -262 332 1 4 769 3437 170 161 13 chr3L 24138499 24139418 -404139 - DMCR1A LINE CR1 -261 4209 3155 4 769 646 121 26 8 chr3L 24139421 24139538 -404019 - DMCR1A LINE CR1 -1455 3015 2897 4 769 595 148 196 27 chr3L 24139539 24139723 -403834 - DMCR1A LINE CR1 -1906 2564 2350 4 769 1398 141 3 56 chr3L 24139736 24140021 -403536 - DMCR1A LINE CR1 -2235 2235 1966 4 769 1255 152 140 0 chr3L 24140025 24140275 -403282 - DMCR1A LINE CR1 -2649 1821 1537 4 769 10295 37 42 5 chr3L 24140362 24141746 -401811 + M4DM DNA Transib 1 1435 0 4 769 415 248 8 23 chr3L 24142796 24142924 -400633 - DIVER2_I LTR Pao -2325 1822 1697 4 769 3318 171 173 7 chr3L 24143724 24144819 -398738 - MAX_I LTR Pao -2671 5243 3968 4 769 481 108 0 21 chr3L 24144816 24144911 -398646 - DNAREP1_DM LINE Penelope -320 274 182 4 769 28 0 0 0 chr3L 24146436 24146464 -397093 + AT_rich Low_complexity Low_complexity 1 28 0 4 769 542 229 44 15 chr3L 24146548 24146752 -396805 - HOBO DNA hAT -611 2405 2196 4 769 2789 69 105 6 chr3L 24146872 24147549 -396008 + BS3_DM LINE Jockey 215 958 -832 4 769 692 67 0 0 chr3L 24147543 24147633 -395924 + BS3_DM LINE Jockey 1284 1373 -417 4 769 2548 74 11 0 chr3L 24147644 24147997 -395560 + BS3_DM LINE Jockey 1430 1786 -4 4 769 337 252 191 5 chr3L 24148521 24148720 -394837 + FW_DM LINE Jockey 1911 2146 -2546 4 769 1128 244 160 13 chr3L 24148739 24149133 -394424 + FW_DM LINE Jockey 3555 4006 -686 4 769 5829 30 102 0 chr3L 24149175 24149940 -393617 - Baggins1 LINE LOA 0 5453 4611 4 769 1429 116 50 39 chr3L 24152352 24152631 -390926 + DNAREP1_DM LINE Penelope 189 470 -124 4 769 273 164 0 0 chr3L 24153074 24153129 -390428 - DNAREP1_DM LINE Penelope -184 410 356 4 769 1365 116 264 29 chr3L 24153287 24153734 -389823 - DNAREP1_DM LINE Penelope 0 594 1 4 769 3163 16 0 0 chr3L 24154831 24155207 -388350 + PROTOP_A DNA P 730 1105 0 4 769 257 119 0 0 chr3L 24156016 24156058 -387499 - DNAREP1_DM LINE Penelope -543 51 10 4 769 573 41 0 0 chr3L 24156064 24156137 -387420 - DNAREP1_DM LINE Penelope 0 594 522 4 769 465 174 95 51 chr3L 24156146 24156317 -387240 - DNAREP1_DM LINE Penelope -262 332 117 4 769 2768 64 215 5 chr3L 24156770 24157348 -386209 - R1-2_DM LINE R1 -194 3022 2323 4 769 4036 58 54 4 chr3L 24157346 24157904 -385653 - R1-2_DM LINE R1 -1165 2051 1466 4 769 1185 94 139 0 chr3L 24158216 24158417 -385140 - DNAREP1_DM LINE Penelope 0 594 366 4 769 383 214 48 152 chr3L 24158447 24158678 -384879 - DNAREP1_DM LINE Penelope -351 243 37 4 769 458 158 0 0 chr3L 24158841 24158923 -384634 - DNAREP1_DM LINE Penelope -500 94 13 4 769 21 36 0 0 chr3L 24160104 24160132 -383425 + AT_rich Low_complexity Low_complexity 1 28 0 4 769 383 192 0 0 chr3L 24160144 24160222 -383335 - DNAREP1_DM LINE Penelope 0 594 517 4 769 375 129 147 0 chr3L 24160255 24160399 -383158 - DNAREP1_DM LINE Penelope -262 332 157 4 769 664 192 176 48 chr3L 24160437 24160807 -382750 - DNAREP1_DM LINE Penelope -288 306 1 4 769 3953 6 4 0 chr3L 24161943 24162413 -381144 + ZAM_LTR LTR Gypsy 1 472 0 4 769 513 0 0 0 chr3L 24162413 24162472 -381085 + ZAM_I LTR Gypsy 1 59 -7431 4 769 46326 3 0 1 chr3L 24162472 24168743 -374814 + ZAM_I LTR Gypsy 1223 7490 0 4 769 4133 6 4 0 chr3L 24168743 24169213 -374344 + ZAM_LTR LTR Gypsy 1 472 0 4 769 228 247 25 25 chr3L 24169416 24169495 -374062 - ZAM_I LTR Gypsy -3806 3684 3606 4 769 2444 59 59 0 chr3L 24169536 24169857 -373700 + DMCR1A LINE CR1 3572 3911 -559 4 769 975 142 22 24 chr3L 24170062 24170273 -373284 - DNAREP1_DM LINE Penelope -262 332 86 4 769 24599 38 60 3 chr3L 24170271 24173796 -369761 - DOC3_DM LINE Jockey 0 4740 1017 4 769 3938 51 6 8 chr3L 24173794 24174312 -369245 - DOC3_DM LINE Jockey -3829 911 395 4 769 9086 35 71 26 chr3L 24174312 24175543 -368014 + DOC2_DM LINE Jockey 2 1287 -3506 4 769 13782 14 20 0 chr3L 24175530 24177130 -366427 + DOC2_DM LINE Jockey 1667 3298 -1495 4 769 1462 11 32 16 chr3L 24177140 24177328 -366229 + DOC2_DM LINE Jockey 4603 4793 0 4 769 853 10 0 0 chr3L 24177328 24177424 -366133 - DOC3_DM LINE Jockey -4335 405 310 4 769 2601 30 3 21 chr3L 24177426 24177762 -365795 + DOC3_DM LINE Jockey 4411 4740 0 4 769 2469 147 52 22 chr3L 24177739 24178312 -365245 + DNAREP1_DM LINE Penelope 86 594 0 4 769 26 30 0 0 chr3L 24178367 24178400 -365157 + AT_rich Low_complexity Low_complexity 1 33 0 4 769 877 90 0 0 chr3L 24179564 24179697 -363860 + G4_DM LINE Jockey 3724 3856 0 4 769 756 0 0 0 chr3L 24180420 24180504 -363053 + (TTA)n Simple_repeat Simple_repeat 1 84 0 4 769 3607 99 38 2 chr3L 24180593 24181121 -362436 - DMCR1A LINE CR1 -426 4044 3498 4 769 260 114 0 0 chr3L 24181111 24181146 -362411 - DMCR1A LINE CR1 -1147 3323 3289 4 769 19558 62 58 10 chr3L 24181149 24183817 -359740 - Baggins1 LINE LOA -2565 2888 3 4 769 1312 128 110 12 chr3L 24184494 24184739 -358818 - DNAREP1_DM LINE Penelope -20 574 306 4 769 240 122 0 0 chr3L 24184803 24184844 -358713 + (TCTA)n Simple_repeat Simple_repeat 4 44 0 4 769 6145 56 65 7 chr3L 24184958 24185792 -357765 - DMCR1A LINE CR1 -91 4379 3498 4 769 9705 66 41 14 chr3L 24185790 24187117 -356440 - DMCR1A LINE CR1 -1470 3000 1638 4 769 180 0 0 0 chr3L 24187119 24187139 -356418 + (CTATA)n Simple_repeat Simple_repeat 1 20 0 4 769 4117 64 124 10 chr3L 24187142 24187724 -355833 - DMCR1A LINE CR1 -3056 1414 767 4 769 2728 80 48 0 chr3L 24187743 24188116 -355441 + G5A_DM LINE Jockey 781 1171 -1670 4 769 1352 69 6 0 chr3L 24188114 24188288 -355269 + G5A_DM LINE Jockey 1341 1515 -1326 4 769 5720 64 96 14 chr3L 24188288 24189204 -354353 + G5A_DM LINE Jockey 1624 2614 -227 4 769 274 100 0 0 chr3L 24189200 24189240 -354317 + G5A_DM LINE Jockey 2794 2833 -8 4 769 480 292 26 37 chr3L 24189490 24189870 -353687 - TV1I LTR Gypsy -1051 4912 4537 4 769 303 249 43 43 chr3L 24189881 24190045 -353512 - TV1I LTR Gypsy -1509 4454 4291 4 769 792 40 10 0 chr3L 24190045 24190146 -353411 - DNAREP1_DM LINE Penelope 0 594 493 4 769 2313 7 0 78 chr3L 24190147 24190454 -353103 + DM176_LTR LTR Gypsy 1 283 -224 4 769 2104 20 16 0 chr3L 24190455 24190708 -352849 + DM176_LTR LTR Gypsy 251 507 0 4 769 216 0 0 0 chr3L 24190710 24190734 -352823 + (TA)n Simple_repeat Simple_repeat 1 24 0 4 769 5942 0 0 0 chr3L 24190734 24191392 -352165 - QUASIMODO_LTR LTR Gypsy 0 658 1 4 769 32767 7 0 0 chr3L 24191392 24195241 -348316 - QUASIMODO_I LTR Gypsy 0 6060 2213 4 769 6354 0 6 1 chr3L 24195231 24195936 -347621 - QUASIMODO_I LTR Gypsy -5352 708 1 4 769 5942 0 0 0 chr3L 24195936 24196594 -346963 - QUASIMODO_LTR LTR Gypsy 0 658 1 4 769 521 112 6 30 chr3L 24196594 24196691 -346866 - DNAREP1_DM LINE Penelope -91 503 424 4 769 35 71 0 0 chr3L 24197453 24197523 -346034 + AT_rich Low_complexity Low_complexity 1 70 0 4 769 5972 53 14 5 chr3L 24197614 24198373 -345184 - IVK_DM LINE I -2831 2571 1806 4 769 702 359 27 30 chr3L 24198550 24199182 -344375 - BLASTOPIA_I LTR Gypsy -1 4480 3851 4 769 392 294 0 0 chr3L 24199246 24199365 -344192 - BLASTOPIA_I LTR Gypsy -749 3732 3614 4 769 497 320 101 24 chr3L 24199403 24199739 -343818 - BLASTOPIA_I LTR Gypsy -1319 3162 2801 4 769 934 97 93 5 chr3L 24199798 24199953 -343604 - DNAREP1_DM LINE Penelope -22 572 424 4 769 33 0 0 0 chr3L 24200222 24200255 -343302 + AT_rich Low_complexity Low_complexity 1 33 0 4 769 633 302 34 49 chr3L 24200257 24201254 -342303 - TV1I LTR Gypsy -2104 3859 2629 4 769 51 51 0 0 chr3L 24202428 24202507 -341050 + AT_rich Low_complexity Low_complexity 1 79 0 4 769 403 241 9 0 chr3L 24202530 24202638 -340919 - IDEFIX_I LTR Gypsy -3245 2383 2275 4 769 37 52 0 0 chr3L 24202788 24202846 -340711 + AT_rich Low_complexity Low_complexity 1 58 0 4 769 33 25 0 0 chr3L 24203079 24203119 -340438 + AT_rich Low_complexity Low_complexity 1 40 0 4 769 204 40 0 0 chr3L 24203460 24203485 -340072 + (TC)n Simple_repeat Simple_repeat 2 26 0 4 769 21 0 0 0 chr3L 24203743 24203764 -339793 + AT_rich Low_complexity Low_complexity 1 21 0 4 769 314 242 79 55 chr3L 24204551 24204678 -338879 + DIVER2_I LTR Pao 479 608 -3539 4 769 741 347 106 60 chr3L 24204766 24205683 -337874 + DIVER2_I LTR Pao 855 1813 -2334 4 769 232 276 0 0 chr3L 24205905 24205963 -337594 + DIVER2_I LTR Pao 4088 4145 -2 4 769 970 162 141 21 chr3L 24205977 24206211 -337346 + QUASIMODO_LTR LTR Gypsy 328 589 -69 4 769 22 35 0 0 chr3L 24206223 24206252 -337305 + AT_rich Low_complexity Low_complexity 1 29 0 4 769 230 156 47 0 chr3L 24206258 24206322 -337235 + (TAAA)n Simple_repeat Simple_repeat 3 69 0 4 769 222 24 0 87 chr3L 24206341 24206387 -337170 + (TTA)n Simple_repeat Simple_repeat 2 43 0 4 769 309 228 12 11 chr3L 24206773 24206872 -336685 - TV1I LTR Gypsy -839 5221 5044 4 769 23034 20 24 3 chr3L 24206925 24209904 -333653 - Invader2_I LTR Gypsy -1487 3105 1 4 769 2373 11 0 0 chr3L 24209904 24210170 -333387 - Invader2_LTR LTR Gypsy 0 266 1 4 769 446 281 145 28 chr3L 24210235 24210785 -332772 - TV1I LTR Gypsy -1056 4907 4291 4 769 792 40 10 0 chr3L 24210785 24210886 -332671 - DNAREP1_DM LINE Penelope 0 594 493 4 769 2282 11 0 78 chr3L 24210887 24211194 -332363 + DM176_LTR LTR Gypsy 1 283 -224 4 769 2104 20 16 0 chr3L 24211195 24211448 -332109 + DM176_LTR LTR Gypsy 251 507 0 4 769 54880 7 6 1 chr3L 24211448 24211938 -331619 + DM176_I LTR Gypsy 1 518 -5902 4 769 181 30 29 57 chr3L 24211938 24211973 -331584 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 769 54880 7 6 1 chr3L 24211973 24217873 -325684 + DM176_I LTR Gypsy 519 6420 0 4 769 2277 14 0 78 chr3L 24217873 24218180 -325377 + DM176_LTR LTR Gypsy 1 283 -224 4 769 2104 20 16 0 chr3L 24218181 24218434 -325123 + DM176_LTR LTR Gypsy 251 507 0 4 769 270 0 0 0 chr3L 24218436 24218466 -325091 + (TA)n Simple_repeat Simple_repeat 1 30 0 4 769 495 98 7 12 chr3L 24218472 24218552 -325005 - DNAREP1_DM LINE Penelope -106 488 424 4 769 23 54 0 0 chr3L 24219333 24219370 -324187 + AT_rich Low_complexity Low_complexity 1 37 0 4 769 352 292 39 39 chr3L 24219669 24219822 -323735 + Gypsy4_I LTR Gypsy 847 999 -5289 4 769 29 60 0 0 chr3L 24220115 24220165 -323392 + AT_rich Low_complexity Low_complexity 1 50 0 4 769 22 35 0 0 chr3L 24220445 24220474 -323083 + AT_rich Low_complexity Low_complexity 1 29 0 4 769 496 321 25 24 chr3L 24221044 24221471 -322086 + Gypsy_DS LTR Gypsy 3010 3591 -2938 4 769 293 226 37 98 chr3L 24221506 24221678 -321879 + BURDOCK_LTR LTR Gypsy 29 211 -64 4 769 948 115 22 87 chr3L 24221760 24221989 -321568 + TLD2 Unknown Unknown 5 218 0 4 769 454 306 34 77 chr3L 24221983 24222538 -321019 + Gypsy4_I LTR Gypsy 2933 3310 -2978 4 769 31 68 0 0 chr3L 24223422 24223481 -320076 + AT_rich Low_complexity Low_complexity 1 59 0 4 769 35 63 0 0 chr3L 24223744 24223807 -319750 + AT_rich Low_complexity Low_complexity 1 63 0 4 769 31 44 0 0 chr3L 24224412 24224457 -319100 + AT_rich Low_complexity Low_complexity 1 45 0 4 769 782 88 80 0 chr3L 24224474 24224599 -318958 + PROTOP_A DNA P 183 317 -788 4 769 579 115 0 124 chr3L 24224720 24224849 -318708 + PROTOP_A DNA P 847 959 -146 4 769 5905 98 69 5 chr3L 24224854 24225897 -317660 + G5A_DM LINE Jockey 2034 2841 0 4 769 1626 67 54 0 chr3L 24225920 24226245 -317312 - G4_DM LINE Jockey 0 3856 3468 4 769 435 85 0 0 chr3L 24226257 24226316 -317241 + PROTOP_A DNA P 948 1007 -98 4 769 1170 124 56 78 chr3L 24226462 24226768 -316789 + Gypsy12A_LTR LTR Gypsy 980 1278 -1002 4 769 4035 276 65 16 chr3L 24227421 24229311 -314246 - QUASIMODO_I LTR Gypsy -165 5895 3914 4 769 5169 250 63 35 chr3L 24229303 24231188 -312369 - TV1I LTR Gypsy -2247 3716 1778 4 769 775 300 63 26 chr3L 24231400 24231907 -311650 - QUASIMODO_I LTR Gypsy -4331 1729 1204 4 769 395 332 78 11 chr3L 24232041 24232309 -311248 - QUASIMODO_I LTR Gypsy -5338 722 437 4 769 4008 69 44 5 chr3L 24232481 24233052 -310505 + IDEFIX_LTR LTR Gypsy 2 594 0 4 769 637 138 34 25 chr3L 24233063 24233182 -310375 + Gypsy12A_LTR LTR Gypsy 1118 1237 -1043 4 769 2033 166 151 67 chr3L 24233266 24233910 -309647 + Gypsy12A_LTR LTR Gypsy 1580 2277 -3 4 769 22 0 0 0 chr3L 24234014 24234036 -309521 + AT_rich Low_complexity Low_complexity 1 22 0 4 769 33 56 0 0 chr3L 24234180 24234234 -309323 + AT_rich Low_complexity Low_complexity 1 54 0 4 769 821 168 73 15 chr3L 24234811 24235008 -308549 + DNAREP1_DM LINE Penelope 321 485 -109 4 769 1041 66 0 0 chr3L 24235481 24235616 -307941 + DNAREP1_DM LINE Penelope 1 135 -459 4 769 2389 0 0 0 chr3L 24235616 24235892 -307665 - Copia_LTR LTR Copia 0 276 1 4 769 40836 1 0 0 chr3L 24235892 24240485 -303072 - Copia_I LTR Copia 0 4593 1 4 769 2389 0 0 0 chr3L 24240485 24240761 -302796 - Copia_LTR LTR Copia 0 276 1 4 769 405 185 65 0 chr3L 24240762 24240870 -302687 + DNAREP1_DM LINE Penelope 132 246 -348 4 769 1473 66 73 36 chr3L 24241629 24241848 -301709 + DNAREP1_DM LINE Penelope 365 591 -3 4 769 234 303 44 22 chr3L 24242213 24242304 -301253 + Gypsy2_I LTR Gypsy 3843 3935 -2200 4 769 238 310 0 0 chr3L 24242299 24242357 -301200 + Gypsy10_I LTR Gypsy 3553 3610 -1668 4 769 3462 168 46 61 chr3L 24242371 24243193 -300364 - Gypsy12_LTR LTR Gypsy 0 2336 1527 4 769 866 194 82 41 chr3L 24243189 24243589 -299968 - Gypsy12_LTR LTR Gypsy -962 1374 899 4 769 693 243 48 11 chr3L 24243600 24243787 -299770 - Gypsy12_LTR LTR Gypsy -1568 768 575 4 769 886 192 18 72 chr3L 24243813 24244054 -299503 - Gypsy12_LTR LTR Gypsy -1842 494 274 4 769 593 86 0 0 chr3L 24244085 24244166 -299391 - Gypsy12_LTR LTR Gypsy -2151 185 105 4 769 13065 50 4 1 chr3L 24244163 24245808 -297749 + FB4_DM DNA Tc1 1110 2759 -1330 4 769 550 132 9 54 chr3L 24245803 24245915 -297642 - Gypsy12_LTR LTR Gypsy -2229 107 1 4 769 268 197 0 0 chr3L 24245915 24245980 -297577 + Gypsy10_I LTR Gypsy 3622 3686 -1592 4 769 318 228 136 0 chr3L 24246146 24246261 -297296 + Gypsy4_I LTR Gypsy 4627 4741 -1547 4 769 733 200 105 6 chr3L 24247148 24247329 -296228 - LINEJ1_DM LINE Jockey -1325 3695 3497 4 769 301 244 22 11 chr3L 24247341 24247432 -296125 - LINEJ1_DM LINE Jockey -1574 3446 3355 4 769 1062 226 16 4 chr3L 24247432 24247676 -295881 - LINEJ1_DM LINE Jockey -1986 3034 2788 4 96 2382 221 193 4 chr3L 24247703 24248765 -294792 - LINEJ1_DM LINE Jockey -2861 2159 898 4 770 10869 101 113 8 chr3L 24248772 24251359 -292198 + I_DM LINE I 1477 4335 -1896 4 770 22 0 0 0 chr3L 24251834 24251856 -291701 + AT_rich Low_complexity Low_complexity 1 22 0 4 770 13449 46 61 0 chr3L 24252255 24253956 -289601 - Baggins1 LINE LOA 0 5453 3649 4 770 3823 37 0 0 chr3L 24253956 24254418 -289139 - PROTOP_A DNA P 0 1105 644 4 770 3858 23 95 0 chr3L 24254408 24254890 -288667 - PROTOP_A DNA P -577 528 1 4 770 9760 49 72 7 chr3L 24254890 24256352 -287205 - Baggins1 LINE LOA -1798 3655 2098 4 770 9547 42 28 2 chr3L 24256333 24257516 -286041 - Baggins1 LINE LOA -3717 1736 523 4 770 1684 40 84 9 chr3L 24257496 24257722 -285835 - Baggins1 LINE LOA -5209 244 2 4 770 3040 46 30 53 chr3L 24258135 24258570 -284987 + Gypsy11_LTR LTR Gypsy 28 452 0 4 770 9349 111 86 76 chr3L 24258570 24260613 -282944 + Gypsy11_I LTR Gypsy 1 2063 -1461 4 770 11613 220 28 28 chr3L 24260621 24263713 -279844 + DM412 LTR Gypsy 2761 5854 -1043 4 770 2191 156 53 20 chr3L 24263713 24264163 -279394 + DM412B_LTR LTR Gypsy 1 465 -106 4 770 4935 75 3 8 chr3L 24264178 24264906 -278651 + Gypsy11_I LTR Gypsy 2661 3384 -140 4 770 4691 4 0 0 chr3L 24265247 24265765 -277792 + NOMAD_LTR LTR Gypsy 1 518 0 4 770 59946 2 1 1 chr3L 24265765 24272339 -271218 + NOMAD_I LTR Gypsy 1 6572 0 4 770 4691 4 0 0 chr3L 24272339 24272857 -270700 + NOMAD_LTR LTR Gypsy 1 518 0 4 770 2806 50 56 76 chr3L 24272857 24273286 -270271 + Gypsy11_LTR LTR Gypsy 33 452 0 4 770 1548 90 22 0 chr3L 24273388 24273611 -269946 - Transib5 DNA Transib 0 3001 2774 4 770 8856 14 30 10 chr3L 24273611 24274694 -268863 + PROTOP_A DNA P 1 1105 0 4 770 1936 15 142 4 chr3L 24274823 24275084 -268473 - TRANSIB1 DNA Transib -2717 297 1 4 770 597 175 154 21 chr3L 24275397 24275637 -267920 - DNAREP1_DM LINE Penelope -322 272 1 4 770 2282 151 62 15 chr3L 24276022 24276492 -267065 - DMCR1A LINE CR1 0 4470 3979 4 770 237 335 24 89 chr3L 24276539 24276785 -266772 - ACCORD2_I LTR Gypsy -6457 755 526 4 770 1706 83 12 106 chr3L 24276864 24277186 -266371 - Invader3_LTR LTR Gypsy -6 292 1 4 770 16782 14 6 3 chr3L 24277186 24279232 -264325 - Invader3_I LTR Gypsy 0 4888 2836 4 770 8880 27 0 1 chr3L 24279241 24280347 -263210 - PROTOP_A DNA P 0 1105 1 4 770 1230 13 0 0 chr3L 24280356 24280506 -263051 - Invader3_I LTR Gypsy -2064 2824 2675 4 770 8893 28 4 0 chr3L 24280507 24281596 -261961 - Invader3_I LTR Gypsy -3795 1093 1 4 770 1323 91 75 99 chr3L 24281596 24281890 -261667 - Invader3_LTR LTR Gypsy 0 298 12 4 770 375 131 29 14 chr3L 24281914 24281984 -261573 - DMCR1A LINE CR1 -486 3984 3914 4 770 265 164 0 0 chr3L 24282541 24282596 -260961 - Gypsy8_I LTR Gypsy -4289 58 4 4 770 846 160 4 215 chr3L 24282596 24282868 -260689 - Gypsy8_LTR LTR Gypsy 0 304 1 4 770 408 163 52 42 chr3L 24282870 24282966 -260591 - DMCR1A LINE CR1 -552 3918 3822 4 770 30 77 0 0 chr3L 24284080 24284145 -259412 + AT_rich Low_complexity Low_complexity 1 65 0 4 770 29 0 0 0 chr3L 24284219 24284248 -259309 + AT_rich Low_complexity Low_complexity 1 29 0 4 770 410 212 62 62 chr3L 24284791 24284967 -258590 - Gypsy8_LTR LTR Gypsy -8 296 121 4 770 7410 15 102 11 chr3L 24285134 24286147 -257410 + PROTOP_A DNA P 1 1105 0 4 770 23 54 0 0 chr3L 24286339 24286376 -257181 + AT_rich Low_complexity Low_complexity 1 37 0 4 770 24 77 0 0 chr3L 24287003 24287055 -256502 + AT_rich Low_complexity Low_complexity 1 52 0 4 770 835 183 306 14 chr3L 24287322 24287703 -255854 + DMCR1A LINE CR1 951 1441 -3029 4 770 3174 131 74 31 chr3L 24287714 24288319 -255238 + DMCR1A LINE CR1 2684 3314 -1156 4 770 458 95 40 0 chr3L 24288323 24288397 -255160 + Baggins1 LINE LOA 4688 4764 -689 4 770 750 78 0 0 chr3L 24288389 24288491 -255066 + Baggins1 LINE LOA 4968 5069 -384 4 770 458 32 48 0 chr3L 24288511 24288573 -254984 + Baggins1 LINE LOA 5387 5451 -2 4 770 4697 158 34 0 chr3L 24288583 24289427 -254130 + DMCR1A LINE CR1 3303 4175 -295 4 770 763 98 168 50 chr3L 24289436 24289597 -253960 - DNAREP1_DM LINE Penelope -62 532 353 4 770 2127 111 107 13 chr3L 24289594 24289988 -253569 + DNAREP1_DM LINE Penelope 164 594 0 4 770 25 31 0 0 chr3L 24291420 24291452 -252105 + AT_rich Low_complexity Low_complexity 1 32 0 4 770 183 72 23 45 chr3L 24291534 24291578 -251979 + (TATAA)n Simple_repeat Simple_repeat 4 46 0 4 770 22 56 0 0 chr3L 24291629 24291665 -251892 + AT_rich Low_complexity Low_complexity 1 36 0 4 770 22 35 0 0 chr3L 24291798 24291827 -251730 + AT_rich Low_complexity Low_complexity 1 29 0 4 770 428 176 0 47 chr3L 24292489 24292596 -250961 - DNAREP1_DM LINE Penelope 0 594 493 4 770 376 152 15 0 chr3L 24292803 24292869 -250688 - DNAREP1_DM LINE Penelope -106 488 422 4 770 493 231 152 78 chr3L 24292875 24293157 -250400 + Gypsy8_LTR LTR Gypsy 2 304 0 4 770 555 175 152 7 chr3L 24293720 24293858 -249699 - DNAREP1_DM LINE Penelope -166 428 271 4 770 1400 128 34 31 chr3L 24294930 24295298 -248259 + DNAREP1_DM LINE Penelope 1 485 -109 4 770 29 19 0 55 chr3L 24295298 24295353 -248204 + AT_rich Low_complexity Low_complexity 1 52 0 4 770 7592 40 66 22 chr3L 24295394 24296481 -247076 + LOOPER1_DM DNA PiggyBac 1 1135 -746 4 770 2288 47 23 17 chr3L 24296480 24296826 -246731 + LOOPER1_DM DNA PiggyBac 1532 1879 -2 4 770 189 0 0 0 chr3L 24297288 24297309 -246248 + (TA)n Simple_repeat Simple_repeat 2 22 0 4 770 1126 246 95 30 chr3L 24297357 24297789 -245768 - Copia_I LTR Copia -250 4343 3884 4 770 19768 25 5 2 chr3L 24297791 24300218 -243339 + BS LINE Jockey 5 2437 -2689 4 770 2689 34 0 0 chr3L 24300221 24300547 -243010 + BS LINE Jockey 3273 3598 -1528 4 770 1200 33 0 0 chr3L 24300537 24300689 -242868 + BS LINE Jockey 4972 5123 -3 4 770 1575 293 13 22 chr3L 24300724 24301505 -242052 - Copia_I LTR Copia -757 3836 3063 4 770 1982 284 15 15 chr3L 24302012 24302892 -240665 - Copia_I LTR Copia -2314 2279 1400 4 770 10040 65 41 0 chr3L 24303180 24304593 -238964 + DMRT1C LINE R1 3925 5395 -48 4 770 770 208 0 11 chr3L 24304640 24305000 -238557 + (CATATA)n Simple_repeat Simple_repeat 1 356 0 4 770 258 149 60 0 chr3L 24304994 24305061 -238496 + (CATA)n Simple_repeat Simple_repeat 3 73 0 4 770 964 148 0 0 chr3L 24306091 24306253 -237304 + Gypsy2_LTR LTR Gypsy 10 171 -182 4 770 370 43 0 0 chr3L 24306415 24306461 -237096 + Gypsy2_I LTR Gypsy 11 56 -6079 4 770 9866 157 79 50 chr3L 24306490 24308828 -234729 + Gypsy2_I LTR Gypsy 1085 3490 -2645 4 770 2043 168 16 62 chr3L 24308841 24309278 -234279 + Gypsy2_I LTR Gypsy 4678 5094 -1041 4 770 297 257 0 0 chr3L 24309564 24309638 -233919 - Gypsy12_I LTR Gypsy -557 4989 4916 4 770 747 47 57 0 chr3L 24309681 24309787 -233770 + Baggins1 LINE LOA 3 114 -5339 4 770 14500 44 18 1 chr3L 24309783 24311653 -231904 + Baggins1 LINE LOA 217 2118 -3335 4 770 15113 113 65 48 chr3L 24311652 24314609 -228948 + Baggins1 LINE LOA 2446 5452 -1 4 770 22 80 0 0 chr3L 24315189 24315239 -228318 + AT_rich Low_complexity Low_complexity 1 50 0 4 770 473 269 7 7 chr3L 24315354 24315500 -228057 + Gypsy12_I LTR Gypsy 3289 3434 -2112 4 770 506 348 30 32 chr3L 24315912 24316419 -227138 + Gypsy12_I LTR Gypsy 5000 5505 -41 4 770 25 31 0 0 chr3L 24317548 24317580 -225977 + AT_rich Low_complexity Low_complexity 1 32 0 4 770 7908 117 68 12 chr3L 24318558 24320201 -223356 - S_DM DNA Tc1 0 1736 1 4 770 1227 152 116 40 chr3L 24320279 24320608 -222949 - DNAREP1_DM LINE Penelope -152 442 89 4 770 1272 36 42 0 chr3L 24320998 24321165 -222392 + PROTOP_A DNA P 1 174 -931 4 770 2960 75 96 9 chr3L 24321165 24321625 -221932 - PROTOP DNA P 0 4480 3981 4 770 2033 69 0 4 chr3L 24321625 24321902 -221655 + PROTOP_A DNA P 823 1104 -1 4 770 494 161 33 33 chr3L 24323596 24323718 -219839 - DMRT1A LINE R1 -27 5156 5035 4 770 265 28 0 0 chr3L 24323730 24323766 -219791 - DMCR1A LINE CR1 -465 4005 3970 4 770 230 75 0 0 chr3L 24323782 24323822 -219735 + DMCR1A LINE CR1 3962 4001 -469 4 770 4384 60 67 10 chr3L 24323830 24324455 -219102 - DMCR1A LINE CR1 -512 3958 3298 4 770 10368 43 22 0 chr3L 24324450 24325787 -217770 - DMCR1A LINE CR1 -1290 3180 1815 4 770 3053 45 10 0 chr3L 24325791 24326193 -217364 - PROTOP_A DNA P -92 1013 608 4 770 2091 38 8 0 chr3L 24326193 24326457 -217100 + Invader2_LTR LTR Gypsy 1 266 0 4 770 513 73 42 0 chr3L 24326457 24326553 -217004 - PROTOP DNA P -3733 747 648 4 770 4430 35 5 7 chr3L 24326550 24327123 -216434 - PROTOP_A DNA P -533 572 1 4 770 6099 45 59 20 chr3L 24327123 24328707 -214850 - DMCR1A LINE CR1 -2825 1645 1 4 770 1029 336 18 14 chr3L 24329034 24329701 -213856 - BLASTOPIA_I LTR Gypsy -431 4050 3381 4 770 7237 47 53 1 chr3L 24329705 24330667 -212890 - Baggins1 LINE LOA 0 5453 4442 4 770 11184 48 6 1 chr3L 24330660 24332106 -211451 - Baggins1 LINE LOA -2715 2738 1286 4 770 2374 33 7 0 chr3L 24332093 24332398 -211159 - Baggins1 LINE LOA -4512 941 635 4 770 1876 41 146 0 chr3L 24332403 24332670 -210887 - Baggins1 LINE LOA -5146 307 2 4 770 1059 312 52 19 chr3L 24332856 24333533 -210024 - BLASTOPIA_I LTR Gypsy -1282 3199 2501 4 770 418 306 158 22 chr3L 24333579 24333895 -209662 + Copia2_I LTR Copia 3222 3580 -582 4 770 871 331 2 0 chr3L 24333955 24334351 -209206 + Copia2_I LTR Copia 3712 4108 -54 4 770 23399 1 0 0 chr3L 24334503 24337243 -206314 - DOC6_DM LINE Jockey 0 4222 1483 4 770 2116 54 7 0 chr3L 24337242 24337522 -206035 - Baggins1 LINE LOA -3886 1567 1286 4 770 2374 33 7 0 chr3L 24337509 24337814 -205743 - Baggins1 LINE LOA -4512 941 635 4 770 1876 41 146 0 chr3L 24337819 24338086 -205471 - Baggins1 LINE LOA -5146 307 2 4 770 1059 312 52 19 chr3L 24338272 24338949 -204608 - BLASTOPIA_I LTR Gypsy -1282 3199 2501 4 770 418 306 158 22 chr3L 24338995 24339311 -204246 + Copia2_I LTR Copia 3222 3580 -582 4 770 871 331 2 0 chr3L 24339371 24339767 -203790 + Copia2_I LTR Copia 3712 4108 -54 4 770 1109 155 14 15 chr3L 24340657 24341025 -202532 - DNAREP1_DM LINE Penelope -229 365 122 4 770 26 30 0 0 chr3L 24341839 24341872 -201685 + AT_rich Low_complexity Low_complexity 1 33 0 4 770 193 111 67 0 chr3L 24343161 24343206 -200351 + (AATAG)n Simple_repeat Simple_repeat 3 50 0 4 770 599 82 10 0 chr3L 24343206 24343303 -200254 - DNAREP1_DM LINE Penelope -293 301 204 4 770 720 208 52 32 chr3L 24343292 24343540 -200017 - DNAREP1_DM LINE Penelope -321 273 21 4 770 851 85 0 30 chr3L 24343736 24343869 -199688 - Transib-N1_DM DNA Transib -151 363 235 4 770 26 0 0 0 chr3L 24343972 24343998 -199559 + AT_rich Low_complexity Low_complexity 1 26 0 4 770 2143 41 92 0 chr3L 24345263 24345558 -197999 + ROOA_LTR LTR Pao 65 386 0 4 770 25 0 0 0 chr3L 24347556 24347581 -195976 + AT_rich Low_complexity Low_complexity 1 25 0 4 770 2838 34 2 79 chr3L 24348356 24348772 -194785 - MICROPIA_LTR LTR Gypsy 0 476 93 4 770 22 35 0 0 chr3L 24349248 24349277 -194280 + AT_rich Low_complexity Low_complexity 1 29 0 4 770 593 316 19 26 chr3L 24349277 24349882 -193675 - GTWIN_I LTR Gypsy -2883 3538 2878 4 770 247 219 0 0 chr3L 24349909 24349982 -193575 - DM297_I LTR Gypsy -3741 2426 2372 4 770 247 317 7 47 chr3L 24351663 24351812 -191745 - BURDOCK_I LTR Gypsy -4868 992 850 4 770 49 0 0 0 chr3L 24352948 24352997 -190560 + AT_rich Low_complexity Low_complexity 1 49 0 4 770 1045 252 51 3 chr3L 24353460 24353771 -189786 - DIVER2_I LTR Pao -512 3635 3310 4 770 759 333 2 66 chr3L 24353875 24354312 -189245 - DIVER2_I LTR Pao -2907 1240 832 4 770 368 302 0 8 chr3L 24354600 24354730 -188827 - DIVER2_I LTR Pao -3727 420 292 4 770 4587 50 2 13 chr3L 24354846 24355472 -188085 + QUASIMODO_LTR LTR Gypsy 1 619 -39 4 770 21 89 0 0 chr3L 24355564 24355620 -187937 + AT_rich Low_complexity Low_complexity 1 56 0 4 770 411 75 15 0 chr3L 24355750 24355817 -187740 + DNAREP1_DM LINE Penelope 92 159 -435 4 770 1454 189 161 0 chr3L 24356572 24356957 -186600 - DMRT1C LINE R1 -945 4498 4052 4 770 241 163 0 0 chr3L 24356960 24357003 -186554 - DMRT1C LINE R1 -1889 3554 3512 4 770 1859 209 139 0 chr3L 24357062 24357550 -186007 - DMRT1C LINE R1 -2168 3275 2720 4 770 1927 165 117 0 chr3L 24357622 24358041 -185516 - DMRT1C LINE R1 -3060 2383 1916 4 770 540 253 144 15 chr3L 24358073 24358274 -185283 - DNAREP1_DM LINE Penelope -44 550 324 4 770 23 0 0 0 chr3L 24358407 24358430 -185127 + AT_rich Low_complexity Low_complexity 1 23 0 4 770 21 0 0 0 chr3L 24358836 24358857 -184700 + AT_rich Low_complexity Low_complexity 1 21 0 4 770 23 0 0 0 chr3L 24359285 24359308 -184249 + AT_rich Low_complexity Low_complexity 1 23 0 4 770 2195 143 89 27 chr3L 24359450 24359985 -183572 - DNAREP1_DM LINE Penelope -24 570 117 4 770 186 43 0 0 chr3L 24360207 24360230 -183327 + (CATTA)n Simple_repeat Simple_repeat 1 23 0 4 770 484 356 30 28 chr3L 24360745 24361144 -182413 - NOMAD_I LTR Gypsy -88 6484 6085 4 770 228 216 0 0 chr3L 24361756 24361807 -181750 - NOMAD_I LTR Gypsy -561 6011 5961 4 770 821 207 9 17 chr3L 24361987 24362218 -181339 - Stalker2_I LTR Gypsy -1797 5605 5377 4 770 23654 0 0 0 chr3L 24362218 24364946 -178611 + DOC LINE Jockey 1 2728 -1997 4 770 9247 1 0 1 chr3L 24364945 24366018 -177539 + DOC LINE Jockey 3654 4725 0 4 770 593 176 98 0 chr3L 24366019 24366185 -177372 - Stalker2_I LTR Gypsy -2011 5391 5262 4 770 2502 28 28 0 chr3L 24366185 24366507 -177050 - DOC3_DM LINE Jockey 0 4740 4410 4 770 1245 74 121 14 chr3L 24366510 24366717 -176840 - DOC3_DM LINE Jockey -516 4224 3996 4 770 6416 48 42 0 chr3L 24366714 24367585 -175972 - DOC3_DM LINE Jockey -2892 1848 941 4 770 5372 51 1 7 chr3L 24367582 24368298 -175259 - DOC3_DM LINE Jockey -4028 712 1 4 770 5119 81 67 2 chr3L 24368790 24369672 -173885 - DMCR1A LINE CR1 -55 4415 3437 4 770 7947 39 21 25 chr3L 24369672 24370782 -172775 + PROTOP_A DNA P 1 1105 0 4 770 314 152 34 0 chr3L 24370782 24370840 -172717 - DMCR1A LINE CR1 -1026 3444 3385 4 770 3448 150 87 76 chr3L 24370840 24371922 -171635 + PROTOP_B DNA P 1 1094 -59 4 770 10190 84 3 3 chr3L 24371994 24373469 -170088 - DMRT1C LINE R1 -1336 4107 2633 4 770 5402 81 55 1 chr3L 24373468 24374275 -169282 - DMRT1C LINE R1 -2927 2516 1667 4 770 3127 147 52 32 chr3L 24374283 24374978 -168579 - DMRT1C LINE R1 -4733 710 2 4 770 5149 31 27 11 chr3L 24375026 24375684 -167873 + DMCR1A LINE CR1 977 1645 -2825 4 770 4405 37 5 7 chr3L 24375684 24376257 -167300 + PROTOP_A DNA P 1 572 -533 4 770 513 73 42 0 chr3L 24376254 24376350 -167207 + PROTOP DNA P 648 747 -3733 4 770 2091 38 8 0 chr3L 24376350 24376614 -166943 - Invader2_LTR LTR Gypsy 0 266 1 4 770 3027 47 10 0 chr3L 24376614 24377016 -166541 + PROTOP_A DNA P 608 1013 -92 4 770 10358 43 22 0 chr3L 24377020 24378357 -165200 + DMCR1A LINE CR1 1815 3180 -1290 4 96 8027 54 39 0 chr3L 24378352 24379439 -164118 + DMCR1A LINE CR1 3298 4426 -44 4 771 1553 127 8 0 chr3L 24379456 24379716 -163841 - DNAREP1_DM LINE Penelope -106 488 227 4 771 473 289 82 20 chr3L 24379727 24379971 -163586 - Jockey2 LINE Jockey -1414 2014 1756 4 771 461 331 62 21 chr3L 24380770 24381115 -162442 + Gypsy_DS LTR Gypsy 3008 3322 -4200 4 771 397 165 26 92 chr3L 24381057 24381207 -162350 + TLD2 Unknown Unknown 2 141 -77 4 771 2000 30 4 50 chr3L 24381207 24381487 -162070 - MDG3_LTR LTR Gypsy 0 267 1 4 771 35475 12 73 7 chr3L 24381487 24385994 -157563 - MDG3_I LTR Gypsy 0 4986 183 4 771 570 0 0 0 chr3L 24385994 24386060 -157497 - MDG3_I LTR Gypsy -4920 66 1 4 771 1988 34 4 50 chr3L 24386059 24386339 -157218 - MDG3_LTR LTR Gypsy 0 267 1 4 771 512 67 0 0 chr3L 24386343 24386418 -157139 + TLD2 Unknown Unknown 144 218 0 4 771 359 249 40 34 chr3L 24386632 24386797 -156760 + IDEFIX_I LTR Gypsy 2509 2652 -2976 4 771 25 65 0 0 chr3L 24387730 24387776 -155781 + AT_rich Low_complexity Low_complexity 1 46 0 4 771 43 20 0 0 chr3L 24388052 24388102 -155455 + AT_rich Low_complexity Low_complexity 1 50 0 4 771 1531 83 57 32 chr3L 24388258 24388506 -155051 - G5A_DM LINE Jockey 0 2841 2588 4 771 36 23 0 0 chr3L 24388722 24388765 -154792 + AT_rich Low_complexity Low_complexity 1 43 0 4 771 457 304 30 20 chr3L 24388765 24388963 -154594 - LINEJ1_DM LINE Jockey -3780 1240 1041 4 771 580 252 89 30 chr3L 24389604 24389841 -153716 + ROO_I LTR Pao 2987 3237 -5019 4 771 9982 37 116 8 chr3L 24389861 24391701 -151856 - G4_DM LINE Jockey 0 3856 1817 4 771 6002 67 8 11 chr3L 24391729 24392586 -150971 - G4_DM LINE Jockey -2035 1821 967 4 771 1457 22 0 0 chr3L 24392584 24392762 -150795 - G4_DM LINE Jockey -3111 745 568 4 771 1261 38 0 0 chr3L 24392756 24392914 -150643 - G4_DM LINE Jockey -3622 234 77 4 771 1317 114 212 0 chr3L 24392913 24393177 -150380 + DNAREP1_DM LINE Penelope 275 594 0 4 771 24 0 0 0 chr3L 24393369 24393393 -150164 + AT_rich Low_complexity Low_complexity 1 24 0 4 771 1336 168 39 18 chr3L 24393437 24393722 -149835 - DNAREP1_DM LINE Penelope -187 407 117 4 771 905 139 24 0 chr3L 24393723 24393889 -149668 - DNAREP1_DM LINE Penelope -424 170 1 4 771 30 0 0 0 chr3L 24394704 24394734 -148823 + AT_rich Low_complexity Low_complexity 1 30 0 4 771 270 50 0 0 chr3L 24395276 24395316 -148241 + NINJA_I LTR Pao 5972 6011 0 4 771 2629 93 11 58 chr3L 24395379 24395847 -147710 + IDEFIX_LTR LTR Gypsy 133 578 -16 4 771 1875 34 0 0 chr3L 24396112 24396346 -147211 + G4_DM LINE Jockey 1 234 -3622 4 771 1457 22 0 0 chr3L 24396340 24396518 -147039 + G4_DM LINE Jockey 568 745 -3111 4 771 15537 59 74 13 chr3L 24396516 24399241 -144316 + G4_DM LINE Jockey 967 3856 0 4 771 580 252 89 30 chr3L 24399261 24399498 -144059 - ROO_I LTR Pao -5019 3237 2987 4 771 457 304 30 20 chr3L 24400139 24400337 -143220 + LINEJ1_DM LINE Jockey 1041 1240 -3780 4 771 37 23 0 0 chr3L 24400337 24400381 -143176 + AT_rich Low_complexity Low_complexity 1 44 0 4 771 1531 83 57 32 chr3L 24400597 24400845 -142712 + G5A_DM LINE Jockey 2588 2841 0 4 771 43 20 0 0 chr3L 24401001 24401051 -142506 + AT_rich Low_complexity Low_complexity 1 50 0 4 771 5402 14 11 0 chr3L 24402230 24402881 -140676 + QUASIMODO_LTR LTR Gypsy 1 658 0 4 771 49344 10 4 1 chr3L 24402881 24408921 -134636 + QUASIMODO_I LTR Gypsy 1 6060 0 4 771 5501 12 0 3 chr3L 24408921 24409581 -133976 + QUASIMODO_LTR LTR Gypsy 1 658 0 4 771 446 306 0 7 chr3L 24409815 24409963 -133594 + GTWIN_LTR LTR Gypsy 76 222 -273 4 771 702 41 49 0 chr3L 24409990 24410112 -133445 - PROTOP_B DNA P -386 767 640 4 771 1683 98 58 24 chr3L 24410113 24410407 -133150 + Gypsy8_LTR LTR Gypsy 1 304 0 4 771 1269 79 27 40 chr3L 24410407 24410630 -132927 + Gypsy8_I LTR Gypsy 1 220 -4127 4 771 4535 43 15 31 chr3L 24411272 24411926 -131631 - PROTOP_B DNA P -509 644 1 4 771 728 69 10 0 chr3L 24412050 24412151 -131406 + PROTOP_B DNA P 1 102 -1051 4 771 1777 332 37 43 chr3L 24412162 24414332 -129225 - Invader6_I LTR Gypsy -1919 2180 1 4 771 180 0 0 0 chr3L 24414736 24414756 -128801 + (T)n Simple_repeat Simple_repeat 1 20 0 4 771 7676 28 7 0 chr3L 24414757 24415713 -127844 + DMRT1B LINE R1 155 1117 -4066 4 771 10646 27 14 0 chr3L 24415709 24417032 -126525 + DMRT1B LINE R1 1227 2568 -2615 4 771 4897 34 113 0 chr3L 24417023 24417766 -125791 + DMRT1B LINE R1 4357 5183 0 4 771 3744 76 44 5 chr3L 24417770 24418337 -125220 + IDEFIX_LTR LTR Gypsy 6 594 0 4 771 4975 184 18 15 chr3L 24418849 24419879 -123678 + IDEFIX_I LTR Gypsy 1 1034 -4594 4 771 3477 105 8 0 chr3L 24419866 24420390 -123167 + IDEFIX_I LTR Gypsy 1137 1664 -3964 4 771 3169 135 36 7 chr3L 24420384 24420943 -122614 + IDEFIX_I LTR Gypsy 1918 2492 -3136 4 771 5230 120 5 12 chr3L 24420962 24421842 -121715 + IDEFIX_I LTR Gypsy 2615 3487 -2141 4 771 15032 15 0 1 chr3L 24421836 24423605 -119952 - Gypsy6_I LTR Gypsy -1768 5244 3477 4 771 4518 142 39 6 chr3L 24423607 24424452 -119105 + IDEFIX_I LTR Gypsy 3391 4263 -1365 4 771 4450 134 28 19 chr3L 24424453 24425281 -118276 + IDEFIX_I LTR Gypsy 4506 5340 -288 4 771 67 0 0 0 chr3L 24425281 24425348 -118209 + AT_rich Low_complexity Low_complexity 1 67 0 4 771 283 197 0 15 chr3L 24425355 24425422 -118135 + Transib-N1_DM DNA Transib 41 106 -408 4 771 184 134 19 58 chr3L 24425961 24426064 -117493 + (TTTA)n Simple_repeat Simple_repeat 2 100 0 4 771 25 31 0 0 chr3L 24426317 24426349 -117208 + AT_rich Low_complexity Low_complexity 1 32 0 4 771 2777 28 39 0 chr3L 24426349 24426705 -116852 - QUASIMODO_LTR LTR Gypsy 0 658 289 4 771 7715 66 34 1 chr3L 24426702 24427785 -115772 - DMRT1C LINE R1 -337 5106 3988 4 771 543 52 0 0 chr3L 24427778 24427855 -115702 - QUASIMODO_LTR LTR Gypsy -581 77 1 4 771 524 143 231 8 chr3L 24428889 24429023 -114534 + Transib-N1_DM DNA Transib 351 514 0 4 771 1147 29 0 0 chr3L 24430696 24430836 -112721 - PROTOP DNA P -1 4479 4340 4 771 1198 69 4 20 chr3L 24430835 24431088 -112469 - PROTOP DNA P -371 4109 3940 4 771 291 49 0 0 chr3L 24431099 24431140 -112417 - PROTOP DNA P -3426 1054 1014 4 771 33 85 0 0 chr3L 24431152 24431234 -112323 + AT_rich Low_complexity Low_complexity 1 82 0 4 771 3501 55 8 2 chr3L 24431234 24431711 -111846 - DMRT1C LINE R1 -976 4467 3988 4 771 543 52 0 0 chr3L 24431704 24431781 -111776 - QUASIMODO_LTR LTR Gypsy -581 77 1 4 771 724 0 0 0 chr3L 24432310 24432394 -111163 + DM1731_LTR LTR Copia 1 84 -252 4 771 14517 12 1 1 chr3L 24432397 24434114 -109443 + DM1731_I LTR Copia 1 1718 -2258 4 771 17446 4 15 2 chr3L 24434111 24436166 -107391 + DM1731_I LTR Copia 1897 3976 0 4 771 2730 30 0 0 chr3L 24436166 24436502 -107055 + DM1731_LTR LTR Copia 1 336 0 4 771 524 143 231 8 chr3L 24437012 24437146 -106411 + Transib-N1_DM DNA Transib 351 514 0 4 771 2783 71 13 13 chr3L 24438815 24439316 -104241 - PROTOP_A DNA P 0 1105 689 4 771 291 49 0 0 chr3L 24439327 24439368 -104189 - PROTOP DNA P -3426 1054 1014 4 771 2498 55 57 0 chr3L 24439405 24439771 -103786 - PROTOP DNA P -4092 388 1 4 771 871 330 136 10 chr3L 24439771 24440713 -102844 + Invader1_I LTR Gypsy 1384 2296 -890 4 771 1695 107 93 29 chr3L 24440736 24441081 -102476 - ROVER-LTR_DM LTR Gypsy 0 367 1 4 771 1224 155 75 17 chr3L 24441081 24441376 -102181 - ROVER-I_DM LTR Gypsy 0 6584 6273 4 771 1477 338 59 46 chr3L 24441708 24444592 -98965 + Copia2_I LTR Copia 140 3060 -1102 4 771 593 295 40 40 chr3L 24444603 24444981 -98576 + Copia2_I LTR Copia 3658 4035 -127 4 771 1334 161 3 0 chr3L 24445261 24445547 -98010 - ROVER-I_DM LTR Gypsy -308 6276 5990 4 771 17549 199 7 8 chr3L 24445582 24449345 -94212 - ROVER-I_DM LTR Gypsy -1276 5308 1549 4 771 8909 27 0 0 chr3L 24449354 24450459 -93098 + PROTOP_A DNA P 1 1105 0 4 771 2202 246 189 8 chr3L 24450471 24451645 -91912 - ROVER-I_DM LTR Gypsy -5050 1534 148 4 771 783 186 93 134 chr3L 24451652 24452198 -91359 - ROVER-I_DM LTR Gypsy -6060 524 1 4 771 1699 102 96 29 chr3L 24452198 24452542 -91015 - ROVER-LTR_DM LTR Gypsy 0 367 1 4 771 292 309 62 27 chr3L 24452569 24452788 -90769 + Invader1_I LTR Gypsy 3345 3539 -560 4 771 3136 87 95 9 chr3L 24453188 24453723 -89834 - IDEFIX_LTR LTR Gypsy 0 594 14 4 771 2228 119 40 2 chr3L 24453726 24454130 -89427 - IDEFIX_I LTR Gypsy -1 5627 5209 4 771 11368 58 84 6 chr3L 24454129 24455845 -87712 + DOC5_DM LINE Jockey 963 2811 -1871 4 771 4396 40 102 40 chr3L 24455852 24456502 -87055 + DOC5_DM LINE Jockey 3275 3964 -718 4 771 1509 32 0 0 chr3L 24456502 24456688 -86869 + PROTOP_A DNA P 1 186 -919 4 771 3911 25 4 4 chr3L 24456688 24457170 -86387 + Gypsy_LTR LTR Gypsy 1 482 0 4 771 56357 7 1 0 chr3L 24457168 24463667 -79890 + Gypsy_I LTR Gypsy 1 6507 0 4 771 3911 25 4 4 chr3L 24463667 24464149 -79408 + Gypsy_LTR LTR Gypsy 1 482 0 4 771 7287 25 4 1 chr3L 24464149 24465069 -78488 + PROTOP_A DNA P 183 1105 0 4 771 4226 34 113 5 chr3L 24465069 24465723 -77834 + DOC5_DM LINE Jockey 3958 4682 0 4 771 21 0 0 0 chr3L 24465723 24465744 -77813 + AT_rich Low_complexity Low_complexity 1 21 0 4 771 2161 149 19 26 chr3L 24465744 24466170 -77387 - Invader1_LTR LTR Gypsy 0 423 1 4 771 24 0 0 0 chr3L 24466170 24466194 -77363 + AT_rich Low_complexity Low_complexity 1 24 0 4 771 3147 150 16 25 chr3L 24466194 24466802 -76755 - IDEFIX_I LTR Gypsy -520 5108 4506 4 771 2711 135 16 0 chr3L 24466803 24467256 -76301 - IDEFIX_I LTR Gypsy -1365 4263 3804 4 771 2971 39 26 0 chr3L 24467256 24467640 -75917 + Gypsy6_LTR LTR Gypsy 1 394 -13 4 771 898 46 4 230 chr3L 24467662 24467888 -75669 + Gypsy6_I LTR Gypsy 1 175 -6837 4 771 36200 18 24 2 chr3L 24467899 24472283 -71274 + Gypsy6_I LTR Gypsy 767 5244 -1768 4 771 5230 120 5 12 chr3L 24472277 24473157 -70400 - IDEFIX_I LTR Gypsy -2141 3487 2615 4 771 3102 139 29 7 chr3L 24473160 24473705 -69852 - IDEFIX_I LTR Gypsy -3154 2474 1918 4 771 9068 158 13 9 chr3L 24473699 24475357 -68200 - IDEFIX_I LTR Gypsy -3964 1664 1 4 771 3744 76 44 5 chr3L 24475868 24476435 -67122 - IDEFIX_LTR LTR Gypsy 0 594 6 4 771 4897 34 113 0 chr3L 24476439 24477182 -66375 - DMRT1B LINE R1 0 5183 4357 4 771 10619 29 14 0 chr3L 24477173 24478496 -65061 - DMRT1B LINE R1 -2615 2568 1227 4 771 7701 28 8 0 chr3L 24478492 24479453 -64104 - DMRT1B LINE R1 -4066 1117 149 4 771 1749 330 37 43 chr3L 24479913 24482044 -61513 + Invader6_I LTR Gypsy 40 2180 -1919 4 771 746 59 10 0 chr3L 24482055 24482156 -61401 - PROTOP_B DNA P -1051 102 1 4 771 4085 43 68 32 chr3L 24482280 24482902 -60655 + PROTOP_B DNA P 1 644 -509 4 771 1269 79 27 40 chr3L 24483544 24483767 -59790 - Gypsy8_I LTR Gypsy -4127 220 1 4 771 1683 98 58 24 chr3L 24483767 24484061 -59496 - Gypsy8_LTR LTR Gypsy 0 304 1 4 771 702 41 49 0 chr3L 24484062 24484184 -59373 + PROTOP_B DNA P 640 767 -386 4 771 446 306 0 7 chr3L 24484211 24484359 -59198 - GTWIN_LTR LTR Gypsy -273 222 76 4 771 246 319 42 8 chr3L 24484610 24484730 -58827 + MDG1_I LTR Gypsy 1851 1974 -4622 4 771 713 114 9 0 chr3L 24484733 24484847 -58710 + DNAREP1_DM LINE Penelope 4 118 -476 4 771 345 105 18 0 chr3L 24484850 24484907 -58650 + DNAREP1_DM LINE Penelope 433 490 -104 4 771 897 101 0 7 chr3L 24485785 24485924 -57633 - DM297_LTR LTR Gypsy -86 328 191 4 771 427 153 101 10 chr3L 24485954 24486053 -57504 - DM297_LTR LTR Gypsy -306 108 1 4 771 894 114 55 33 chr3L 24486057 24486238 -57319 - DM176_I LTR Gypsy -7 6413 6229 4 771 530 80 11 11 chr3L 24486261 24486350 -57207 - I_DM LINE I -767 5464 5376 4 771 10630 66 65 5 chr3L 24486350 24489550 -54007 - I_DM LINE I -1348 4883 88 4 771 654 79 123 0 chr3L 24489537 24489651 -53906 - DM297_I LTR Gypsy -187 5980 5853 4 771 1873 84 3 10 chr3L 24489648 24489961 -53596 - DM297_I LTR Gypsy -433 5734 5424 4 771 1951 101 14 3 chr3L 24489963 24490310 -53247 - DM297_I LTR Gypsy -1436 4731 4381 4 771 2333 34 129 0 chr3L 24490534 24490860 -52697 + PROTOP_A DNA P 1 368 -737 4 771 4093 38 0 0 chr3L 24490854 24491380 -52177 + PROTOP_A DNA P 580 1105 0 4 771 2285 236 18 130 chr3L 24491392 24493119 -50438 - ROVER-I_DM LTR Gypsy -5050 1534 1 4 771 1699 102 96 29 chr3L 24493119 24493463 -50094 - ROVER-LTR_DM LTR Gypsy 0 367 1 4 771 292 309 62 27 chr3L 24493490 24493709 -49848 + Invader6_I LTR Gypsy 3345 3539 -560 4 771 3136 87 95 9 chr3L 24494109 24494644 -48913 - IDEFIX_LTR LTR Gypsy 0 594 14 4 771 2228 119 40 2 chr3L 24494647 24495051 -48506 - IDEFIX_I LTR Gypsy -1 5627 5209 4 771 5727 43 55 4 chr3L 24495050 24495864 -47693 + DOC5_DM LINE Jockey 963 1818 -2864 4 771 800 54 9 0 chr3L 24495879 24495991 -47566 + DOC5_DM LINE Jockey 1917 2029 -2653 4 771 6582 27 50 8 chr3L 24495988 24496834 -46723 + DMCR1A LINE CR1 765 1645 -2825 4 771 6223 80 60 79 chr3L 24496834 24498010 -45547 + PROTOP_B DNA P 1 1153 0 4 771 31 0 0 0 chr3L 24498197 24498228 -45329 + AT_rich Low_complexity Low_complexity 1 31 0 4 771 25 0 0 0 chr3L 24498610 24498635 -44922 + AT_rich Low_complexity Low_complexity 1 25 0 4 771 4830 57 46 0 chr3L 24498635 24499287 -44270 - BS2 LINE Jockey 0 4721 4040 4 771 5558 45 28 0 chr3L 24499289 24500000 -43557 - BS2 LINE Jockey -791 3930 3200 4 771 6655 68 5 5 chr3L 24500000 24500883 -42674 - BS2 LINE Jockey -1522 3199 2317 4 771 8114 81 25 0 chr3L 24500832 24501935 -41622 + BS2 LINE Jockey 611 1741 -2980 4 771 1062 84 0 7 chr3L 24502350 24502505 -41052 - DM297_I LTR Gypsy -1784 4383 4230 4 771 1554 70 41 16 chr3L 24502504 24502749 -40808 - DM297_I LTR Gypsy -2119 4048 3798 4 771 2879 66 71 2 chr3L 24502889 24503282 -40275 - Gypsy6A_LTR LTR Gypsy 0 420 1 4 771 39 68 0 0 chr3L 24503327 24503401 -40156 + AT_rich Low_complexity Low_complexity 1 74 0 4 771 185 77 56 37 chr3L 24503567 24503621 -39936 + (CTATT)n Simple_repeat Simple_repeat 3 57 0 4 771 2351 85 8 0 chr3L 24503981 24504334 -39223 - DM297_I LTR Gypsy -2357 3810 3455 4 771 2741 117 162 12 chr3L 24504318 24504897 -38660 - DM297_I LTR Gypsy -3909 2258 1593 4 771 277 197 0 0 chr3L 24504895 24504956 -38601 - DM297_I LTR Gypsy -5318 849 789 4 771 724 181 0 0 chr3L 24504969 24505096 -38461 - DM297_I LTR Gypsy -5532 635 509 4 771 1272 177 28 20 chr3L 24505125 24505477 -38080 - DM297_I LTR Gypsy -5812 355 1 4 771 1823 159 31 59 chr3L 24505481 24505903 -37654 - DM297_LTR LTR Gypsy -4 410 1 4 771 298 200 43 138 chr3L 24506007 24506123 -37434 + DM176_LTR LTR Gypsy 190 294 -213 4 771 2360 274 14 14 chr3L 24506500 24507380 -36177 - Copia_I LTR Copia -2314 2279 1400 4 771 1341 96 5 0 chr3L 24508592 24508779 -34778 + Gypsy12A_LTR LTR Gypsy 2086 2273 -7 4 771 1841 191 75 2 chr3L 24508779 24509205 -34352 + DMRT1B LINE R1 3269 3774 -1409 4 771 909 134 101 0 chr3L 24509203 24509352 -34205 + DMRT1B LINE R1 5000 5163 -20 4 771 2048 49 4 0 chr3L 24509790 24510055 -33502 - DOC3_DM LINE Jockey 0 4740 4475 4 96 11332 38 66 0 chr3L 24510053 24511480 -32077 + DOC3_DM LINE Jockey 3218 4738 -2 4 772 1282 205 118 26 chr3L 24511711 24512017 -31540 + Gypsy8_I LTR Gypsy 1068 1401 -2946 4 772 545 202 0 0 chr3L 24512112 24512238 -31319 + Gypsy8_I LTR Gypsy 1836 1921 -2426 4 772 6974 29 31 5 chr3L 24512255 24513726 -29831 + DMCR1A LINE CR1 138 1645 -2825 4 772 9201 27 4 1 chr3L 24513726 24514828 -28729 + PROTOP_A DNA P 1 1105 0 4 772 12152 40 33 0 chr3L 24514828 24516321 -27236 + DMCR1A LINE CR1 1639 3180 -1290 4 772 8313 51 66 5 chr3L 24516316 24517422 -26135 + DMCR1A LINE CR1 3298 4470 0 4 772 717 146 0 0 chr3L 24517425 24517555 -26002 + Gypsy8_I LTR Gypsy 1918 2047 -2300 4 772 42 20 0 0 chr3L 24518137 24518186 -25371 + AT_rich Low_complexity Low_complexity 1 49 0 4 772 54 29 0 0 chr3L 24519090 24519158 -24399 + AT_rich Low_complexity Low_complexity 1 68 0 4 772 2677 129 205 9 chr3L 24519919 24520465 -23092 + DMCR1A LINE CR1 2369 3021 -1449 4 772 701 120 19 0 chr3L 24520495 24520603 -22954 + DMCR1A LINE CR1 3291 3400 -1070 4 772 951 154 43 0 chr3L 24520600 24520762 -22795 + DMCR1A LINE CR1 3556 3724 -746 4 772 671 157 0 0 chr3L 24520765 24520873 -22684 + DMCR1A LINE CR1 4017 4124 -346 4 772 839 299 143 0 chr3L 24520864 24521248 -22309 + Gypsy4_I LTR Gypsy 3171 3609 -2679 4 772 316 313 0 0 chr3L 24522194 24522293 -21264 - DIVER2_I LTR Pao -2729 1418 1320 4 772 194 150 0 24 chr3L 24522743 24522784 -20773 + (TTA)n Simple_repeat Simple_repeat 3 42 0 4 772 402 191 87 33 chr3L 24522866 24522958 -20599 - DNAREP1_DM LINE Penelope -122 472 376 4 772 2864 69 71 2 chr3L 24523176 24523569 -19988 - Gypsy6A_LTR LTR Gypsy 0 420 1 4 772 57 71 0 0 chr3L 24523637 24523750 -19807 + AT_rich Low_complexity Low_complexity 1 113 0 4 772 26 50 0 0 chr3L 24523942 24523982 -19575 + AT_rich Low_complexity Low_complexity 1 40 0 4 772 528 178 105 6 chr3L 24524315 24524496 -19061 - DNAREP1_DM LINE Penelope -279 315 115 4 772 231 178 22 0 chr3L 24524544 24524589 -18968 + DNAREP1_DM LINE Penelope 399 444 -150 4 772 376 74 19 0 chr3L 24524583 24524637 -18920 + DNAREP1_DM LINE Penelope 540 594 0 4 772 241 149 0 41 chr3L 24524684 24524733 -18824 + DNAREP1_DM LINE Penelope 55 101 -493 4 772 695 136 93 0 chr3L 24524732 24524850 -18707 + DNAREP1_DM LINE Penelope 273 401 -193 4 772 29 0 0 0 chr3L 24524959 24524988 -18569 + AT_rich Low_complexity Low_complexity 1 29 0 4 772 195 19 115 0 chr3L 24525139 24525191 -18366 + (TA)n Simple_repeat Simple_repeat 1 58 0 4 772 253 273 0 0 chr3L 24525602 24525679 -17878 - Invader2_I LTR Gypsy -630 3962 3886 4 772 225 0 0 0 chr3L 24525993 24526018 -17539 + (CTTTA)n Simple_repeat Simple_repeat 5 29 0 4 772 184 0 62 31 chr3L 24526498 24526530 -17027 + (TTTTTA)n Simple_repeat Simple_repeat 4 36 0 4 772 507 301 59 13 chr3L 24526629 24526868 -16689 - MDG3_I LTR Gypsy -1548 3438 3189 4 772 24 0 0 0 chr3L 24527120 24527144 -16413 + AT_rich Low_complexity Low_complexity 1 24 0 4 772 22 56 0 0 chr3L 24528779 24528815 -14742 + AT_rich Low_complexity Low_complexity 1 36 0 4 772 570 229 93 0 chr3L 24529726 24529866 -13691 - DNAREP1_DM LINE Penelope -122 472 320 4 772 379 179 164 6 chr3L 24529900 24530047 -13510 - DNAREP1_DM LINE Penelope -279 315 129 4 772 278 196 284 53 chr3L 24530080 24530270 -13287 - DNAREP1_DM LINE Penelope -346 248 15 4 772 613 118 385 0 chr3L 24530283 24530418 -13139 + DNAREP1_DM LINE Penelope 408 594 0 4 772 334 170 154 2 chr3L 24531080 24531182 -12375 - DNAREP1_DM LINE Penelope -279 315 115 4 772 238 205 49 49 chr3L 24531225 24531307 -12250 - DNAREP1_DM LINE Penelope -348 246 165 4 772 1186 80 0 0 chr3L 24531395 24531546 -12011 - PROTOP_B DNA P 0 1153 1003 4 772 2118 50 182 15 chr3L 24531542 24532117 -11440 - PROTOP_B DNA P -292 861 190 4 772 1289 74 0 5 chr3L 24532114 24532319 -11238 - S_DM DNA Tc1 -20 1716 1513 4 772 1197 279 89 19 chr3L 24532317 24532891 -10666 - Gypsy4_I LTR Gypsy -2143 4145 3544 4 772 1568 262 131 8 chr3L 24532998 24533579 -9978 - Gypsy4_I LTR Gypsy -2420 3440 2677 4 772 862 301 15 6 chr3L 24533611 24533945 -9612 - Gypsy10_I LTR Gypsy -2683 2595 2259 4 772 26 74 0 0 chr3L 24535421 24535475 -8082 + AT_rich Low_complexity Low_complexity 1 54 0 4 772 26 82 0 0 chr3L 24536586 24536647 -6910 + AT_rich Low_complexity Low_complexity 1 61 0 4 772 3918 37 18 18 chr3L 24537134 24537635 -5922 - PROTOP DNA P -3946 534 34 4 772 6890 89 5 0 chr3L 24537607 24538532 -5025 + Gypsy3_I LTR Gypsy 2312 3241 -2936 4 772 1682 118 103 0 chr3L 24538531 24538802 -4755 + Gypsy3_I LTR Gypsy 4134 4432 -1745 4 772 274 146 0 94 chr3L 24538789 24538842 -4715 + Gypsy_DS LTR Gypsy 5346 5393 -2129 4 772 646 132 0 36 chr3L 24538810 24538920 -4637 + Gypsy3_I LTR Gypsy 4537 4642 -1535 4 772 1906 184 0 0 chr3L 24538891 24539212 -4345 + Gypsy3_I LTR Gypsy 4936 5256 -921 4 772 26 82 0 0 chr3L 24540084 24540145 -3412 + AT_rich Low_complexity Low_complexity 1 61 0 4 772 3918 37 18 18 chr3L 24540632 24541133 -2424 - PROTOP DNA P -3946 534 34 4 772 6913 88 5 0 chr3L 24541105 24542030 -1527 + Gypsy3_I LTR Gypsy 2312 3241 -2936 4 772 1698 114 103 0 chr3L 24542029 24542300 -1257 + Gypsy3_I LTR Gypsy 4134 4432 -1745 4 772 274 146 0 94 chr3L 24542287 24542340 -1217 + Gypsy_DS LTR Gypsy 5346 5393 -2129 4 772 646 132 0 36 chr3L 24542308 24542418 -1139 + Gypsy3_I LTR Gypsy 4537 4642 -1535 4 772 1906 184 0 0 chr3L 24542389 24542710 -847 + Gypsy3_I LTR Gypsy 4936 5256 -921 4