585 1453 112 5 0 chr3LHet 2 217 -2555274 + Gypsy3_I LTR Gypsy 3026 3241 -2936 4 585 1582 118 103 0 chr3LHet 216 487 -2555004 + Gypsy3_I LTR Gypsy 4134 4432 -1745 4 585 256 146 0 94 chr3LHet 474 527 -2554964 + Gypsy_DS LTR Gypsy 5346 5393 -2129 4 585 623 98 0 11 chr3LHet 495 588 -2554903 + Gypsy3_I LTR Gypsy 4537 4628 -1549 4 585 1794 184 0 0 chr3LHet 576 897 -2554594 + Gypsy3_I LTR Gypsy 4936 5256 -921 4 585 26 82 0 0 chr3LHet 1769 1830 -2553661 + AT_rich Low_complexity Low_complexity 1 61 0 4 585 3860 27 2 4 chr3LHet 2317 2798 -2552693 - PROTOP DNA P -3946 534 55 4 585 6569 88 5 0 chr3LHet 2798 3723 -2551768 + Gypsy3_I LTR Gypsy 2312 3241 -2936 4 585 1598 114 103 0 chr3LHet 3722 3993 -2551498 + Gypsy3_I LTR Gypsy 4134 4432 -1745 4 585 256 146 0 94 chr3LHet 3980 4033 -2551458 + Gypsy_DS LTR Gypsy 5346 5393 -2129 4 585 623 98 0 11 chr3LHet 4001 4094 -2551397 + Gypsy3_I LTR Gypsy 4537 4628 -1549 4 585 2766 215 100 4 chr3LHet 4082 5196 -2550295 + Gypsy3_I LTR Gypsy 4936 6156 -21 4 585 702 186 23 125 chr3LHet 5199 5463 -2550028 + Gypsy3_LTR LTR Gypsy 1 237 -161 4 585 45 34 0 0 chr3LHet 5521 5580 -2549911 + AT_rich Low_complexity Low_complexity 1 59 0 4 585 347 177 20 145 chr3LHet 5580 5732 -2549759 + Gypsy3_I LTR Gypsy 183 315 -5862 4 585 8278 130 15 22 chr3LHet 5880 7305 -2548186 + Gypsy3_I LTR Gypsy 925 2295 -3882 4 585 1727 178 0 0 chr3LHet 7323 7627 -2547864 + Gypsy3_I LTR Gypsy 5028 5331 -846 4 585 707 211 0 0 chr3LHet 7630 7777 -2547714 + Gypsy3_I LTR Gypsy 6010 6156 -21 4 585 743 178 23 125 chr3LHet 7780 8044 -2547447 + Gypsy3_LTR LTR Gypsy 1 237 -161 4 585 42 36 0 0 chr3LHet 8102 8158 -2547333 + AT_rich Low_complexity Low_complexity 1 56 0 4 585 395 173 19 142 chr3LHet 8158 8313 -2547178 + Gypsy3_I LTR Gypsy 180 315 -5862 4 585 4702 147 25 12 chr3LHet 8461 9267 -2546224 + Gypsy3_I LTR Gypsy 925 1740 -4437 4 585 6509 146 21 0 chr3LHet 9267 10653 -2544838 + Gypsy3_I LTR Gypsy 2294 3733 -3279 4 585 1171 101 0 0 chr3LHet 10652 10820 -2544671 + Gypsy3_I LTR Gypsy 4134 4301 -1876 4 585 1651 254 59 3 chr3LHet 10847 11730 -2543761 + Gypsy3_I LTR Gypsy 5347 6993 -19 4 585 842 198 119 89 chr3LHet 11733 12104 -2543387 + Gypsy3_LTR LTR Gypsy 1 382 -16 4 585 273 211 13 0 chr3LHet 13895 13971 -2541520 + Gypsy8_I LTR Gypsy 1 77 -4270 4 585 1339 85 154 3 chr3LHet 14701 14993 -2540498 + DNAREP1_DM LINE Penelope 221 594 0 4 585 312 358 48 17 chr3LHet 15009 15299 -2540192 + ROO_I LTR Pao 7433 7731 -525 4 585 304 272 9 9 chr3LHet 15380 15495 -2539996 - ROO_I LTR Pao -2488 5768 5654 4 585 1010 118 50 0 chr3LHet 16023 16184 -2539307 - MAX_I LTR Pao -1742 6172 6004 4 585 310 191 29 0 chr3LHet 16182 16250 -2539241 - MAX_I LTR Pao -2372 5542 5473 4 585 227 125 0 0 chr3LHet 16285 16325 -2539166 - BARI1 DNA Tc1 -1708 42 3 4 585 2639 130 4 152 chr3LHet 16293 16990 -2538501 + IDEFIX_LTR LTR Gypsy 1 594 0 4 585 3066 173 7 0 chr3LHet 17394 17978 -2537513 + IDEFIX_I LTR Gypsy 1 588 -5040 4 585 4648 139 5 0 chr3LHet 17985 18757 -2536734 + IDEFIX_I LTR Gypsy 889 1664 -3964 4 585 3004 144 29 0 chr3LHet 18762 19277 -2536214 + IDEFIX_I LTR Gypsy 1963 2492 -3136 4 585 6564 138 28 13 chr3LHet 19296 21418 -2534073 + IDEFIX_I LTR Gypsy 2615 4828 -800 4 585 1907 137 106 9 chr3LHet 21452 22036 -2533455 + IDEFIX_I LTR Gypsy 4988 5628 0 4 585 413 37 0 0 chr3LHet 22036 22090 -2533401 + IDEFIX_LTR LTR Gypsy 1 54 -540 4 585 15655 11 6 1 chr3LHet 22143 24011 -2531480 + FW_DM LINE Jockey 2 1879 -2813 4 585 1689 134 79 32 chr3LHet 24432 24919 -2530572 - QUASIMODO_LTR LTR Gypsy -15 643 1 4 585 2591 45 42 111 chr3LHet 24919 25394 -2530097 - PROTOP_A DNA P -401 704 263 4 585 1362 230 66 29 chr3LHet 25387 25839 -2529652 + TAHRE LINE telomeric 9540 10008 -455 4 585 596 230 119 86 chr3LHet 25855 26216 -2529275 - Gypsy3_LTR LTR Gypsy -25 373 1 4 585 13412 42 5 29 chr3LHet 26469 28303 -2527188 + BATUMI_I LTR Pao 2357 4146 -3817 4 585 16317 116 29 13 chr3LHet 28317 31319 -2524172 + BATUMI_I LTR Pao 4362 7672 -242 4 585 869 92 115 19 chr3LHet 31305 31461 -2524030 + BATUMI_I LTR Pao 7793 7963 0 4 585 1677 50 8 29 chr3LHet 31483 31729 -2523762 + BATUMI_LTR LTR Pao 32 272 0 4 585 506 311 28 16 chr3LHet 31729 31984 -2523507 + Copia_I LTR Copia 408 665 -3928 4 585 4558 68 50 7 chr3LHet 32053 32738 -2522753 + TART LINE telomeric 231 944 -13533 4 585 1734 82 63 8 chr3LHet 32736 33223 -2522268 - TC1_DM DNA Tc1 -1103 563 1 4 585 31 0 0 0 chr3LHet 33577 33608 -2521883 + AT_rich Low_complexity Low_complexity 1 31 0 4 585 751 119 154 12 chr3LHet 33611 33773 -2521718 + TART LINE telomeric 10478 10662 -3815 4 585 3392 62 10 8 chr3LHet 34849 35336 -2520155 + M4DM DNA Transib 1 488 -947 4 585 3487 71 46 23 chr3LHet 35354 35915 -2519576 + M4DM DNA Transib 862 1435 0 4 585 3692 46 51 40 chr3LHet 35927 36520 -2518971 - PROTOP_B DNA P 0 1153 555 4 585 2270 126 150 36 chr3LHet 36751 37277 -2518214 - DNAREP1_DM LINE Penelope 0 594 9 4 585 981 56 345 0 chr3LHet 37369 37566 -2517925 + G4_DM LINE Jockey 1 265 -3591 4 585 3835 81 165 22 chr3LHet 37567 38304 -2517187 + G4_DM LINE Jockey 525 1367 -2489 4 585 34 42 0 0 chr3LHet 38323 38371 -2517120 + AT_rich Low_complexity Low_complexity 1 48 0 4 585 43 94 0 0 chr3LHet 38884 39011 -2516480 + AT_rich Low_complexity Low_complexity 1 127 0 4 585 1177 43 0 0 chr3LHet 40789 40950 -2514541 - IDEFIX_I LTR Gypsy -4655 973 813 4 585 257 29 0 0 chr3LHet 42631 42665 -2512826 + DNAREP1_DM LINE Penelope 526 559 -35 4 585 1703 162 61 61 chr3LHet 42668 43109 -2512382 + DNAREP1_DM LINE Penelope 133 573 -21 4 585 408 134 43 35 chr3LHet 43109 43225 -2512266 + DNAREP1_DM LINE Penelope 184 300 -294 4 585 594 145 241 11 chr3LHet 43207 43381 -2512110 + DNAREP1_DM LINE Penelope 175 388 -206 4 585 403 269 132 13 chr3LHet 43683 44015 -2511476 + IDEFIX_I LTR Gypsy 1518 1770 -3858 4 585 471 306 35 19 chr3LHet 44055 44315 -2511176 + QUASIMODO_I LTR Gypsy 669 942 -5118 4 585 312 259 45 15 chr3LHet 44320 44453 -2511038 + QUASIMODO_I LTR Gypsy 1593 1729 -4331 4 585 2444 251 25 2 chr3LHet 44926 45717 -2509774 + QUASIMODO_I LTR Gypsy 1935 2743 -3317 4 585 1143 270 14 11 chr3LHet 45719 46090 -2509401 + TV1I LTR Gypsy 2742 3113 -2850 4 585 455 291 15 0 chr3LHet 46096 46295 -2509196 + QUASIMODO_I LTR Gypsy 3355 3556 -2504 4 585 908 122 52 6 chr3LHet 46294 46461 -2509030 + G3_DM LINE Jockey 4088 4262 -343 4 585 1977 29 254 0 chr3LHet 46461 46768 -2508723 - DIVER2_LTR LTR Pao 0 385 1 4 585 2764 29 0 9 chr3LHet 46768 47115 -2508376 - DIVER2_I LTR Pao 0 4147 3804 4 585 408 134 43 35 chr3LHet 47140 47256 -2508235 + DNAREP1_DM LINE Penelope 184 300 -294 4 585 594 145 241 11 chr3LHet 47238 47412 -2508079 + DNAREP1_DM LINE Penelope 175 388 -206 4 585 403 269 132 13 chr3LHet 47714 48046 -2507445 + IDEFIX_I LTR Gypsy 1518 1770 -3858 4 585 471 306 35 19 chr3LHet 48086 48346 -2507145 + QUASIMODO_I LTR Gypsy 669 942 -5118 4 585 312 259 45 15 chr3LHet 48351 48484 -2507007 + QUASIMODO_I LTR Gypsy 1593 1729 -4331 4 585 2444 251 25 2 chr3LHet 48957 49748 -2505743 + QUASIMODO_I LTR Gypsy 1935 2743 -3317 4 585 1143 270 14 11 chr3LHet 49750 50121 -2505370 + TV1I LTR Gypsy 2742 3113 -2850 4 585 455 291 15 0 chr3LHet 50127 50326 -2505165 + QUASIMODO_I LTR Gypsy 3355 3556 -2504 4 585 929 116 52 6 chr3LHet 50325 50492 -2504999 + G3_DM LINE Jockey 4088 4262 -343 4 585 1977 29 254 0 chr3LHet 50492 50799 -2504692 - DIVER2_LTR LTR Pao 0 385 1 4 585 13752 32 3 8 chr3LHet 50799 52518 -2502973 - DIVER2_I LTR Pao 0 4147 2437 4 585 2562 46 29 3 chr3LHet 53367 53715 -2501776 - DIVER2_I LTR Pao -1705 2442 2086 4 585 854 45 0 0 chr3LHet 53727 53838 -2501653 - DIVER2_I LTR Pao -4036 111 1 4 585 2612 28 91 25 chr3LHet 53838 54199 -2501292 - DIVER2_LTR LTR Pao 0 385 1 4 585 1709 49 4 54 chr3LHet 54199 54453 -2501038 + G3_DM LINE Jockey 4283 4523 -82 4 585 1821 151 77 30 chr3LHet 54453 54857 -2500634 + Invader1_LTR LTR Gypsy 1 423 0 4 585 1024 58 200 0 chr3LHet 54879 55034 -2500457 + PROTOP_B DNA P 1 186 -967 4 585 1548 194 75 27 chr3LHet 55050 55452 -2500039 + Gypsy_LTR LTR Gypsy 25 445 -37 4 585 381 154 321 7 chr3LHet 55460 55597 -2499894 + Gypsy_I LTR Gypsy 1 180 -6327 4 585 10161 56 8 0 chr3LHet 55599 56928 -2498563 + BS2 LINE Jockey 3382 4721 0 4 585 753 117 1 12 chr3LHet 56944 57084 -2498407 + BS2 LINE Jockey 4605 4721 0 4 585 256 123 70 0 chr3LHet 57104 57161 -2498330 + Gypsy_I LTR Gypsy 252 312 -6195 4 585 7856 2 0 9 chr3LHet 57170 58088 -2497403 - LINEJ1_DM LINE Jockey 0 5020 4111 4 585 31587 112 42 5 chr3LHet 58108 63086 -2492405 + Gypsy_I LTR Gypsy 236 5397 -1110 4 585 1378 168 7 27 chr3LHet 63086 63386 -2492105 + Gypsy_LTR LTR Gypsy 91 384 -98 4 585 25567 104 29 3 chr3LHet 63389 67207 -2488284 + Gypsy_I LTR Gypsy 1046 4964 -1543 4 585 3515 2 0 0 chr3LHet 67207 67606 -2487885 - BLOOD_LTR LTR Gypsy 0 399 1 4 585 56594 0 0 0 chr3LHet 67606 74220 -2481271 - BLOOD_I LTR Gypsy 0 6613 1 4 585 3515 2 0 0 chr3LHet 74220 74619 -2480872 - BLOOD_LTR LTR Gypsy 0 399 1 4 585 2464 167 2 0 chr3LHet 74619 75055 -2480436 + Gypsy_I LTR Gypsy 4961 5397 -1110 4 585 1518 190 6 30 chr3LHet 75055 75419 -2480072 + Gypsy_LTR LTR Gypsy 91 445 -37 4 585 465 18 0 0 chr3LHet 75429 75485 -2480006 + PROTOP_A DNA P 183 238 -867 4 585 5031 55 111 0 chr3LHet 75483 76261 -2479230 + PROTOP_B DNA P 290 1153 0 4 585 2181 95 126 2 chr3LHet 76262 76733 -2478758 + Invader1_I LTR Gypsy 17 545 -2641 4 585 617 92 0 0 chr3LHet 76739 76826 -2478665 + Invader1_I LTR Gypsy 662 748 -2438 4 585 771 126 181 5 chr3LHet 76825 77024 -2478467 + Invader1_LTR LTR Gypsy 111 344 -79 4 585 448 244 6 6 chr3LHet 77073 77237 -2478254 + TV1I LTR Gypsy 3502 3665 -2298 4 585 2267 25 42 0 chr3LHet 77237 77523 -2477968 + Invader3_LTR LTR Gypsy 1 298 0 4 585 482 236 55 83 chr3LHet 77630 77847 -2477644 + TV1I LTR Gypsy 3814 4024 -1939 4 585 21 0 0 0 chr3LHet 77856 77877 -2477614 + AT_rich Low_complexity Low_complexity 1 21 0 4 585 12446 49 26 0 chr3LHet 78294 79954 -2475537 + IDEFIX_I LTR Gypsy 895 2598 -3030 4 585 579 99 0 0 chr3LHet 79953 80044 -2475447 + IDEFIX_I LTR Gypsy 2704 2794 -2834 4 585 2635 94 84 7 chr3LHet 80063 80513 -2474978 + IDEFIX_I LTR Gypsy 3317 3801 -1827 4 585 11306 4 0 1 chr3LHet 80502 81824 -2473667 + DOC LINE Jockey 3406 4725 0 4 585 2529 97 96 20 chr3LHet 81830 82445 -2473046 + IDEFIX_I LTR Gypsy 3777 4449 -1179 4 585 210 37 0 0 chr3LHet 82445 82472 -2473019 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 585 1778 73 113 53 chr3LHet 82472 82577 -2472914 + IDEFIX_I LTR Gypsy 4450 4550 -1078 4 585 4143 56 98 7 chr3LHet 82581 83273 -2472218 + IDEFIX_I LTR Gypsy 4794 5548 -80 4 585 7772 69 52 0 chr3LHet 83312 84420 -2471071 - DMRT1B LINE R1 -1789 3394 2229 4 585 3848 93 39 0 chr3LHet 84417 85005 -2470486 - DMRT1B LINE R1 -3103 2080 1470 4 585 422 79 0 0 chr3LHet 85032 85095 -2470396 - DMRT1B LINE R1 -4090 1093 1031 4 585 271 56 0 0 chr3LHet 85095 85131 -2470360 - DNAREP1_DM LINE Penelope -551 43 8 4 585 519 169 15 7 chr3LHet 85202 85339 -2470152 + PROTOP_A DNA P 311 448 -657 4 585 507 141 287 0 chr3LHet 85378 85549 -2469942 - DNAREP1_DM LINE Penelope -199 395 176 4 585 26 0 0 0 chr3LHet 85651 85677 -2469814 + AT_rich Low_complexity Low_complexity 1 26 0 4 585 4527 2 0 0 chr3LHet 85725 86257 -2469234 + NOMAD_LTR LTR Gypsy 1 518 0 4 585 22844 0 1 9 chr3LHet 86257 88912 -2466579 + NOMAD_I LTR Gypsy 1 2634 -3938 4 585 2850 38 83 5 chr3LHet 89013 89412 -2466079 + IDEFIX_LTR LTR Gypsy 165 594 0 4 585 21 0 0 0 chr3LHet 89569 89590 -2465901 + AT_rich Low_complexity Low_complexity 1 21 0 4 585 1845 96 8 8 chr3LHet 89842 90137 -2465354 + IDEFIX_I LTR Gypsy 1 245 -5383 4 585 23 33 0 0 chr3LHet 90615 90645 -2464846 + AT_rich Low_complexity Low_complexity 1 30 0 4 585 773 97 67 0 chr3LHet 90847 90981 -2464510 - DNAREP1_DM LINE Penelope -444 150 8 4 585 487 184 15 7 chr3LHet 91052 91189 -2464302 + PROTOP_B DNA P 311 448 -705 4 585 268 111 22 0 chr3LHet 91228 91273 -2464218 - DNAREP1_DM LINE Penelope -199 395 350 4 585 423 156 62 0 chr3LHet 91302 91398 -2464093 - DNAREP1_DM LINE Penelope -317 277 176 4 585 27 0 0 0 chr3LHet 91500 91527 -2463964 + AT_rich Low_complexity Low_complexity 1 27 0 4 585 3734 55 78 5 chr3LHet 91597 92151 -2463340 + IDEFIX_LTR LTR Gypsy 1 594 0 4 585 1654 25 0 5 chr3LHet 92233 92436 -2463055 + Invader3_I LTR Gypsy 3993 4194 -694 4 585 1004 61 85 6 chr3LHet 99532 99696 -2455795 - CIRCE LINE Composite -1199 5157 4981 4 585 355 80 0 0 chr3LHet 99975 100025 -2455466 - CIRCE LINE Composite -1376 4980 4931 4 585 822 332 53 34 chr3LHet 100286 101328 -2454163 + BLASTOPIA_I LTR Gypsy 2501 3562 -919 4 585 230 250 0 0 chr3LHet 101856 101924 -2453567 + BLASTOPIA_I LTR Gypsy 4225 4292 -189 4 585 337 0 0 23 chr3LHet 102425 102468 -2453023 - NOMAD_LTR LTR Gypsy 0 518 477 4 585 2592 8 3 0 chr3LHet 108676 109005 -2446486 - NOMAD_LTR LTR Gypsy -206 312 1 4 585 29 0 0 0 chr3LHet 109018 109047 -2446444 + AT_rich Low_complexity Low_complexity 1 29 0 4 585 407 316 55 55 chr3LHet 111865 112284 -2443207 + BLASTOPIA_I LTR Gypsy 2178 2596 -1885 4 585 360 286 32 19 chr3LHet 112507 112664 -2442827 + MDG3_I LTR Gypsy 3266 3424 -1562 4 585 275 311 24 24 chr3LHet 112878 113043 -2442448 + BLASTOPIA_I LTR Gypsy 3541 3705 -776 4 585 2905 63 19 3 chr3LHet 113209 113588 -2441903 - DIVER2_LTR LTR Pao 0 385 1 4 585 282 29 0 0 chr3LHet 113588 113622 -2441869 - DIVER2_I LTR Pao 0 4147 4114 4 585 2543 10 0 6 chr3LHet 113722 114039 -2441452 + DOC LINE Jockey 4411 4725 0 4 585 4309 94 98 25 chr3LHet 114045 114660 -2440831 + IDEFIX_I LTR Gypsy 3777 4449 -1179 4 585 210 37 0 0 chr3LHet 114660 114687 -2440804 + (TAA)n Simple_repeat Simple_repeat 1 27 0 4 585 4309 94 98 25 chr3LHet 114687 114792 -2440699 + IDEFIX_I LTR Gypsy 4450 4550 -1078 4 585 4590 55 98 7 chr3LHet 114796 115488 -2440003 + IDEFIX_I LTR Gypsy 4794 5548 -80 4 585 4441 65 92 0 chr3LHet 115527 116143 -2439348 - DMRT1B LINE R1 -1789 3394 2722 4 585 435 0 0 0 chr3LHet 125087 125137 -2430354 + NOMAD_I LTR Gypsy 6523 6572 0 4 585 4739 0 0 0 chr3LHet 125137 125655 -2429836 + NOMAD_LTR LTR Gypsy 1 518 0 4 585 3961 45 78 5 chr3LHet 125667 126221 -2429270 + IDEFIX_LTR LTR Gypsy 1 594 0 4 585 25 0 0 0 chr3LHet 126411 126436 -2429055 + AT_rich Low_complexity Low_complexity 1 25 0 4 585 3128 55 0 0 chr3LHet 126702 127103 -2428388 + IDEFIX_I LTR Gypsy 21 421 -5207 4 586 9144 106 8 1 chr3LHet 135549 136841 -2418650 - HMSBEAGLE_I LTR Gypsy -1399 5130 3830 4 586 5878 117 26 0 chr3LHet 136831 137680 -2417811 - HMSBEAGLE_I LTR Gypsy -4151 2378 1508 4 586 839 189 0 0 chr3LHet 137682 137825 -2417666 - HMSBEAGLE_I LTR Gypsy -5175 1354 1212 4 586 386 53 18 0 chr3LHet 137937 137994 -2417497 + (TA)n Simple_repeat Simple_repeat 2 59 0 4 586 3107 61 153 7 chr3LHet 138496 138961 -2416530 - Mariner2_DM DNA Tc1 -365 547 15 4 586 225 189 0 0 chr3LHet 139320 139357 -2416134 - TV1I LTR Gypsy -5354 609 573 4 586 261 271 0 56 chr3LHet 139415 139540 -2415951 - OSVALDO_I LTR Gypsy -6102 551 434 4 586 229 114 0 0 chr3LHet 148990 149025 -2406466 - BARI1 DNA Tc1 -1712 38 4 4 586 4075 40 70 7 chr3LHet 148994 149553 -2405938 + IDEFIX_LTR LTR Gypsy 1 594 0 4 586 21 0 0 0 chr3LHet 149743 149764 -2405727 + AT_rich Low_complexity Low_complexity 1 21 0 4 586 7206 63 21 1 chr3LHet 150017 151003 -2404488 + IDEFIX_I LTR Gypsy 13 1065 -4898 4 586 4697 4 0 0 chr3LHet 151472 151990 -2403501 - NOMAD_LTR LTR Gypsy 0 518 1 4 586 273 320 14 21 chr3LHet 152760 152901 -2402590 + Copia2_I LTR Copia 521 696 -3466 4 586 18255 2 0 0 chr3LHet 152951 154993 -2400498 - G6_DM LINE Jockey 0 2042 1 4 586 2993 313 59 32 chr3LHet 155104 157010 -2398481 + Copia2_I LTR Copia 833 2789 -1373 4 586 558 286 22 0 chr3LHet 156999 157184 -2398307 + Copia2_I LTR Copia 3877 4065 -97 4 586 2962 203 32 15 chr3LHet 157474 159666 -2395825 - SAR_DM Satellite Satellite -1116 2229 1 4 586 3730 212 25 18 chr3LHet 159700 164111 -2391380 - SAR_DM Satellite Satellite -378 4441 1 4 586 2280 180 25 3 chr3LHet 164138 164770 -2390721 - SAR_DM Satellite Satellite -634 646 1 4 586 1473 204 16 4 chr3LHet 164793 165283 -2390208 - SAR_DM Satellite Satellite -630 496 1 4 586 3251 207 48 28 chr3LHet 165306 168568 -2386923 - SAR_DM Satellite Satellite -378 3326 1 4 586 1860 183 40 2 chr3LHet 168593 169148 -2386343 - SAR_DM Satellite Satellite -994 576 1 4 586 1035 141 21 39 chr3LHet 169160 169578 -2385913 - DNAREP1_DM LINE Penelope -262 332 90 4 586 6125 50 126 1 chr3LHet 169591 171013 -2384478 + Baggins1 LINE LOA 243 1843 -3610 4 586 3635 39 14 0 chr3LHet 171027 171462 -2384029 + Baggins1 LINE LOA 2128 2568 -2885 4 586 4882 54 74 0 chr3LHet 171459 172541 -2382950 + DMCR1A LINE CR1 328 1489 -2981 4 586 1289 39 0 0 chr3LHet 172540 172694 -2382797 + DMCR1A LINE CR1 1760 1913 -2557 4 586 43102 2 0 0 chr3LHet 172694 177414 -2378077 + BS2 LINE Jockey 1 4721 0 4 586 1204 66 0 0 chr3LHet 177431 177582 -2377909 + DMCR1A LINE CR1 1905 2055 -2415 4 586 13013 27 40 2 chr3LHet 177586 179597 -2375894 + DMCR1A LINE CR1 2384 4470 0 4 586 8697 50 84 0 chr3LHet 179598 180887 -2374604 + Baggins1 LINE LOA 2575 3972 -1481 4 586 7403 46 13 1 chr3LHet 180885 181794 -2373697 + Baggins1 LINE LOA 4534 5453 0 4 586 845 212 35 25 chr3LHet 181796 182166 -2373325 - DNAREP1_DM LINE Penelope -262 332 60 4 586 873 160 87 24 chr3LHet 182150 182611 -2372880 - DNAREP1_DM LINE Penelope -267 327 86 4 586 1042 147 66 31 chr3LHet 182614 183129 -2372362 - DNAREP1_DM LINE Penelope -262 332 87 4 586 1020 161 34 62 chr3LHet 183200 183862 -2371629 - DNAREP1_DM LINE Penelope -262 332 79 4 586 904 131 17 22 chr3LHet 183837 184017 -2371474 - DNAREP1_DM LINE Penelope -275 319 141 4 586 33 0 0 0 chr3LHet 184334 184367 -2371124 + AT_rich Low_complexity Low_complexity 1 33 0 4 586 769 357 38 16 chr3LHet 185198 185751 -2369740 + HMSBEAGLE_I LTR Gypsy 1509 2073 -4456 4 586 286 245 73 28 chr3LHet 186263 186372 -2369119 + HMSBEAGLE_I LTR Gypsy 2650 2763 -3766 4 586 1877 318 39 21 chr3LHet 186652 187649 -2367842 + HMSBEAGLE_I LTR Gypsy 2272 3994 -2535 4 586 628 351 52 44 chr3LHet 187651 189139 -2366352 + HMSBEAGLE_I LTR Gypsy 4245 5743 -786 4 586 24 0 0 0 chr3LHet 189404 189428 -2366063 + AT_rich Low_complexity Low_complexity 1 24 0 4 586 385 181 122 19 chr3LHet 190877 190984 -2364507 - DNAREP1_DM LINE Penelope -356 238 121 4 586 572 130 0 0 chr3LHet 190968 191060 -2364431 - DNAREP1_DM LINE Penelope -361 233 142 4 586 1013 169 51 35 chr3LHet 191070 191574 -2363917 - DNAREP1_DM LINE Penelope -262 332 86 4 586 930 123 23 10 chr3LHet 191549 191746 -2363745 - DNAREP1_DM LINE Penelope -262 332 141 4 586 2911 56 81 0 chr3LHet 191773 192167 -2363324 + Baggins1 LINE LOA 1 426 -5027 4 586 7932 44 77 0 chr3LHet 192165 193162 -2362329 + Baggins1 LINE LOA 1404 2477 -2976 4 586 434 66 16 0 chr3LHet 193296 193357 -2362134 + Jockey2 LINE Jockey 249 310 -3118 4 586 455 333 40 28 chr3LHet 193661 193911 -2361580 + LINEJ1_DM LINE Jockey 954 1206 -3814 4 586 873 87 495 0 chr3LHet 193910 194160 -2361331 + Jockey2 LINE Jockey 386 759 -2669 4 586 2034 86 93 27 chr3LHet 194159 194459 -2361032 + Jockey2 LINE Jockey 864 1183 -2245 4 586 474 62 0 0 chr3LHet 194473 194538 -2360953 + Jockey2 LINE Jockey 3206 3270 -158 4 586 13648 42 18 2 chr3LHet 194551 196230 -2359261 + DMCR1A LINE CR1 2 1707 -2763 4 586 12884 27 42 2 chr3LHet 196229 198237 -2357254 + DMCR1A LINE CR1 2382 4470 0 4 586 8649 52 84 0 chr3LHet 198238 199527 -2355964 + Baggins1 LINE LOA 2575 3972 -1481 4 586 7460 44 16 0 chr3LHet 199525 200431 -2355060 + Baggins1 LINE LOA 4534 5453 0 4 586 755 207 55 26 chr3LHet 200433 200796 -2354695 - DNAREP1_DM LINE Penelope -262 332 60 4 586 850 164 87 24 chr3LHet 200780 201241 -2354250 - DNAREP1_DM LINE Penelope -267 327 86 4 586 1042 146 66 31 chr3LHet 201244 201759 -2353732 - DNAREP1_DM LINE Penelope -262 332 87 4 586 1084 157 55 18 chr3LHet 201830 202541 -2352950 - DNAREP1_DM LINE Penelope -262 332 86 4 586 938 164 27 8 chr3LHet 202521 202879 -2352612 - DNAREP1_DM LINE Penelope -262 332 91 4 586 522 121 103 8 chr3LHet 202880 202997 -2352494 - DNAREP1_DM LINE Penelope -261 333 206 4 586 251 322 48 52 chr3LHet 203320 203592 -2351899 - DM176_I LTR Gypsy -2229 3734 3464 4 586 317 263 0 0 chr3LHet 203882 203988 -2351503 - DM176_I LTR Gypsy -2714 3706 3621 4 586 1750 137 200 36 chr3LHet 203982 204409 -2351082 - DNAREP1_DM LINE Penelope -6 588 119 4 586 271 211 0 66 chr3LHet 204834 204895 -2350596 + DNAREP1_DM LINE Penelope 10 66 -528 4 586 227 200 157 0 chr3LHet 204896 204966 -2350525 + DNAREP1_DM LINE Penelope 514 594 0 4 586 1867 119 132 33 chr3LHet 205227 205737 -2349754 - DNAREP1_DM LINE Penelope -136 458 1 4 586 261 120 0 91 chr3LHet 205817 205872 -2349619 + DNAREP1_DM LINE Penelope 544 593 -1 4 586 1727 112 137 18 chr3LHet 206294 206622 -2348869 + DNAREP1_DM LINE Penelope 228 594 0 4 586 21 36 0 0 chr3LHet 206691 206719 -2348772 + AT_rich Low_complexity Low_complexity 1 28 0 4 586 21 0 0 0 chr3LHet 207705 207726 -2347765 + AT_rich Low_complexity Low_complexity 1 21 0 4 586 1466 125 112 4 chr3LHet 208619 209094 -2346397 - DNAREP1_DM LINE Penelope 0 594 1 4 586 555 269 20 20 chr3LHet 209849 209997 -2345494 + DNAREP1_DM LINE Penelope 294 441 -153 4 586 296 93 0 0 chr3LHet 209994 210037 -2345454 + DNAREP1_DM LINE Penelope 542 584 -10 4 586 698 109 0 0 chr3LHet 210376 210477 -2345014 + DNAREP1_DM LINE Penelope 1 101 -493 4 586 24 32 0 0 chr3LHet 210811 210842 -2344649 + AT_rich Low_complexity Low_complexity 1 31 0 4 586 278 200 15 0 chr3LHet 211003 211068 -2344423 - DNAREP1_DM LINE Penelope -11 583 518 4 586 24 0 0 0 chr3LHet 211450 211474 -2344017 + AT_rich Low_complexity Low_complexity 1 24 0 4 586 24 67 0 0 chr3LHet 211985 212030 -2343461 + AT_rich Low_complexity Low_complexity 1 45 0 4 586 38 39 0 0 chr3LHet 212077 212129 -2343362 + AT_rich Low_complexity Low_complexity 1 52 0 4 586 342 137 0 0 chr3LHet 212517 212568 -2342923 - DNAREP1_DM LINE Penelope -2 592 542 4 586 235 228 0 17 chr3LHet 212695 212753 -2342738 + DNAREP1_DM LINE Penelope 285 341 -253 4 586 248 197 0 32 chr3LHet 212848 212911 -2342580 + DNAREP1_DM LINE Penelope 534 594 0 4 586 257 246 202 0 chr3LHet 213002 213116 -2342375 + DNAREP1_DM LINE Penelope 414 550 -44 4 586 24 32 0 0 chr3LHet 213423 213454 -2342037 + AT_rich Low_complexity Low_complexity 1 31 0 4 586 298 87 22 0 chr3LHet 215229 215275 -2340216 + DNAREP1_DM LINE Penelope 1 47 -547 4 586 247 125 25 89 chr3LHet 215325 215404 -2340087 + DNAREP1_DM LINE Penelope 218 291 -303 4 586 467 174 347 18 chr3LHet 215995 216165 -2339326 - DNAREP1_DM LINE Penelope -62 532 307 4 586 551 179 0 62 chr3LHet 216222 216335 -2339156 - DNAREP1_DM LINE Penelope -487 107 2 4 586 1968 157 124 34 chr3LHet 216333 216802 -2338689 - DNAREP1_DM LINE Penelope 0 594 84 4 586 1434 140 60 20 chr3LHet 216804 217103 -2338388 - DNAREP1_DM LINE Penelope -283 311 1 4 586 232 264 154 0 chr3LHet 217153 217244 -2338247 - DNAREP1_DM LINE Penelope -45 549 445 4 586 22 88 0 0 chr3LHet 217307 217364 -2338127 + AT_rich Low_complexity Low_complexity 1 57 0 4 586 23 0 0 0 chr3LHet 219116 219139 -2336352 + AT_rich Low_complexity Low_complexity 1 23 0 4 586 511 195 8 0 chr3LHet 219714 219832 -2335659 + DNAREP1_DM LINE Penelope 88 206 -388 4 586 821 155 10 73 chr3LHet 219860 220228 -2335263 + DNAREP1_DM LINE Penelope 86 332 -262 4 586 44 20 0 0 chr3LHet 220306 220357 -2335134 + AT_rich Low_complexity Low_complexity 1 51 0 4 586 37 0 0 0 chr3LHet 220424 220461 -2335030 + AT_rich Low_complexity Low_complexity 1 37 0 4 586 266 100 0 0 chr3LHet 220508 220548 -2334943 - PROTOP_B DNA P -888 265 226 4 586 318 164 0 0 chr3LHet 220551 220606 -2334885 + DMRP1 Unknown Unknown 74 128 -218 4 586 23 0 0 0 chr3LHet 220827 220850 -2334641 + AT_rich Low_complexity Low_complexity 1 23 0 4 586 12921 24 32 16 chr3LHet 220943 222585 -2332906 + TRANSIB1 DNA Transib 1 1667 -1347 4 586 1545 30 15 0 chr3LHet 222583 222786 -2332705 + TRANSIB1 DNA Transib 2809 3014 0 4 586 251 174 0 0 chr3LHet 223892 223938 -2331553 - DNAREP1_DM LINE Penelope 0 594 549 4 586 3196 150 25 10 chr3LHet 224922 225520 -2329971 - DMCR1A LINE CR1 -307 4163 3557 4 586 715 185 38 0 chr3LHet 225550 225707 -2329784 - DMCR1A LINE CR1 -1029 3441 3279 4 586 876 160 11 27 chr3LHet 225914 226100 -2329391 - DMCR1A LINE CR1 -1171 3299 3117 4 586 1086 138 0 0 chr3LHet 226101 226282 -2329209 - DMCR1A LINE CR1 -1833 2637 2457 4 586 707 138 46 0 chr3LHet 226279 226409 -2329082 - DMCR1A LINE CR1 -2210 2260 2125 4 586 2038 130 14 22 chr3LHet 226421 226791 -2328700 - DMCR1A LINE CR1 -2907 1563 1197 4 586 373 149 81 0 chr3LHet 226823 226897 -2328594 - DMCR1A LINE CR1 -3450 1020 941 4 586 691 204 225 26 chr3LHet 226943 227245 -2328246 - DMCR1A LINE CR1 -3684 786 425 4 586 1251 69 65 60 chr3LHet 227251 227466 -2328025 - DNAREP1_DM LINE Penelope -9 585 370 4 586 569 121 196 39 chr3LHet 227484 227649 -2327842 + DNAREP1_DM LINE Penelope 431 574 -20 4 586 232 111 0 62 chr3LHet 227646 227694 -2327797 + PROTOP_A DNA P 506 550 -555 4 586 26 0 0 0 chr3LHet 228415 228441 -2327050 + AT_rich Low_complexity Low_complexity 1 26 0 4 586 1410 126 137 38 chr3LHet 228590 228962 -2326529 - TC1-2_DM DNA Tc1 -11 1633 1225 4 586 1869 147 4 124 chr3LHet 228967 229434 -2326057 - DNAREP1_DM LINE Penelope -150 444 34 4 586 971 76 97 0 chr3LHet 229421 229565 -2325926 + DNAREP1_DM LINE Penelope 397 554 -40 4 586 1305 145 136 14 chr3LHet 229556 229842 -2325649 + DNAREP1_DM LINE Penelope 271 591 -3 4 586 287 175 79 0 chr3LHet 229894 229957 -2325534 + DNAREP1_DM LINE Penelope 498 565 -29 4 586 716 156 130 81 chr3LHet 230865 231088 -2324403 - DNAREP1_DM LINE Penelope -2 592 359 4 586 677 149 0 0 chr3LHet 231093 231214 -2324277 - DNAREP1_DM LINE Penelope -473 121 1 4 586 372 244 55 38 chr3LHet 231439 231622 -2323869 + DNAREP1_DM LINE Penelope 380 565 -29 4 586 826 175 148 23 chr3LHet 232183 232399 -2323092 + DNAREP1_DM LINE Penelope 222 464 -130 4 586 662 138 100 14 chr3LHet 232395 232535 -2322956 + DNAREP1_DM LINE Penelope 207 358 -236 4 586 22 35 0 0 chr3LHet 233258 233287 -2322204 + AT_rich Low_complexity Low_complexity 1 29 0 4 586 400 271 71 33 chr3LHet 235327 235510 -2319981 + BLASTOPIA_I LTR Gypsy 4292 4481 0 4 586 32 0 0 0 chr3LHet 235788 235820 -2319671 + AT_rich Low_complexity Low_complexity 1 32 0 4 586 7710 172 90 8 chr3LHet 236214 237805 -2317686 - Invader3_I LTR Gypsy -2297 2591 871 4 586 3540 143 113 8 chr3LHet 237805 239127 -2316364 - FW_DM LINE Jockey -4 4688 3229 4 586 1149 198 97 0 chr3LHet 239132 239380 -2316111 - Invader3_I LTR Gypsy -4013 875 604 4 586 1627 259 54 4 chr3LHet 239418 239899 -2315592 - Invader3_I LTR Gypsy -4357 531 27 4 586 305 272 50 42 chr3LHet 239909 240028 -2315463 - R1_DM LINE R1 -12 5344 5225 4 586 534 189 82 0 chr3LHet 240089 240211 -2315280 - Invader3_LTR LTR Gypsy -84 214 83 4 586 455 133 0 88 chr3LHet 240290 240381 -2315110 + DNAREP1_DM LINE Penelope 388 470 -124 4 586 25 0 0 0 chr3LHet 241341 241366 -2314125 + AT_rich Low_complexity Low_complexity 1 25 0 4 586 1290 112 253 0 chr3LHet 241600 241885 -2313606 - DNAREP1_DM LINE Penelope 0 594 111 4 586 295 137 0 0 chr3LHet 242025 242076 -2313415 + HMSBEAGLE_I LTR Gypsy 1628 1678 -4851 4 586 472 246 144 10 chr3LHet 242079 242280 -2313211 + HMSBEAGLE_I LTR Gypsy 1648 1875 -4654 4 586 5554 81 87 88 chr3LHet 243146 244301 -2311190 - PROTOP_B DNA P 0 1153 1 4 586 263 275 46 0 chr3LHet 244994 245103 -2310388 + TRAM_I LTR Pao 2111 2224 -484 4 586 253 353 54 13 chr3LHet 245766 245990 -2309501 + DIVER2_I LTR Pao 3522 3754 -393 4 586 2637 112 167 8 chr3LHet 246230 246823 -2308668 + FB4_DM DNA Tc1 47 733 -3356 4 586 281 29 0 0 chr3LHet 246903 246937 -2308554 + FB4_DM DNA Tc1 1042 1075 -3014 4 586 631 129 177 14 chr3LHet 247479 247620 -2307871 + DNAREP1_DM LINE Penelope 139 302 -292 4 586 49 32 0 0 chr3LHet 247779 247842 -2307649 + AT_rich Low_complexity Low_complexity 1 63 0 4 586 6049 98 41 57 chr3LHet 248162 249334 -2306157 + PROTOP_B DNA P 1 1153 0 4 586 300 186 92 11 chr3LHet 249849 249936 -2305555 + DNAREP1_DM LINE Penelope 1 94 -500 4 586 1400 110 18 22 chr3LHet 249969 250247 -2305244 + DNAREP1_DM LINE Penelope 76 327 -267 4 586 24 0 0 0 chr3LHet 250647 250671 -2304820 + AT_rich Low_complexity Low_complexity 1 24 0 4 586 36 0 0 0 chr3LHet 250848 250884 -2304607 + AT_rich Low_complexity Low_complexity 1 36 0 4 586 469 132 60 0 chr3LHet 251462 251545 -2303946 + DNAREP1_DM LINE Penelope 1 88 -506 4 586 744 125 0 30 chr3LHet 251582 251714 -2303777 + DNAREP1_DM LINE Penelope 342 469 -125 4 586 359 77 0 0 chr3LHet 251729 251781 -2303710 + DNAREP1_DM LINE Penelope 543 594 0 4 586 1432 140 23 55 chr3LHet 251904 252214 -2303277 + DM297_LTR LTR Gypsy 3 302 -112 4 586 16708 88 44 18 chr3LHet 252230 254979 -2300512 + DM297_I LTR Gypsy 107 2928 -3239 4 586 2423 75 96 90 chr3LHet 254978 255491 -2300000 + DM297_I LTR Gypsy 3712 4227 -1940 4 586 3448 71 81 0 chr3LHet 255463 255982 -2299509 + DM297_I LTR Gypsy 4804 5364 -803 4 586 1587 144 34 82 chr3LHet 255982 256397 -2299094 + DM297_LTR LTR Gypsy 20 414 0 4 586 1275 113 94 137 chr3LHet 257365 257694 -2297797 + HOBO DNA hAT 1 315 -2701 4 586 2853 99 5 9 chr3LHet 257696 258143 -2297348 + PROTOP DNA P 17 461 -4019 4 586 1476 142 152 15 chr3LHet 258144 258480 -2297011 + HOBO DNA hAT 2635 3016 0 4 586 31 68 0 0 chr3LHet 259499 259558 -2295933 + AT_rich Low_complexity Low_complexity 1 59 0 4 586 581 276 29 24 chr3LHet 259642 259919 -2295572 - GTWIN_I LTR Gypsy -1699 5313 5161 4 586 845 308 34 0 chr3LHet 259940 260266 -2295225 - GTWIN_I LTR Gypsy -2782 3639 3303 4 586 1581 118 111 0 chr3LHet 260266 260555 -2294936 - MAX_LTR LTR Pao 0 321 1 4 73 15141 32 6 17 chr3LHet 260561 262514 -2292977 - MAX_I LTR Pao -2 7912 5983 4 587 14823 25 21 1 chr3LHet 262509 264332 -2291159 - MAX_I LTR Pao -2526 5388 3529 4 587 10654 79 167 177 chr3LHet 264337 267452 -2288039 - MAX_I LTR Pao -4829 3085 1 4 587 1730 117 70 0 chr3LHet 267452 267752 -2287739 - MAX_LTR LTR Pao 0 321 1 4 587 2159 307 21 21 chr3LHet 267752 268702 -2286789 - Gypsy_I LTR Gypsy -3114 3393 2444 4 587 374 299 22 30 chr3LHet 268957 269215 -2286276 - Gypsy4_I LTR Gypsy -4438 1850 1654 4 587 775 299 49 18 chr3LHet 269633 270182 -2285309 - Gypsy3_I LTR Gypsy -4631 1546 882 4 587 659 143 22 8 chr3LHet 271286 271420 -2284071 + DNAREP1_DM LINE Penelope 200 335 -259 4 587 2736 139 84 6 chr3LHet 271441 271989 -2283502 + DNAREP1_DM LINE Penelope 4 594 0 4 587 855 162 0 12 chr3LHet 272005 272167 -2283324 + DMCR1A LINE CR1 1966 2125 -2345 4 587 324 143 0 0 chr3LHet 274789 274845 -2280646 + DNAREP1_DM LINE Penelope 536 591 -3 4 587 30706 1 0 0 chr3LHet 275278 280002 -2275489 + DOC LINE Jockey 4 4725 0 4 587 2071 158 123 125 chr3LHet 280069 280663 -2274828 - DNAREP1_DM LINE Penelope 0 594 2 4 587 22 0 0 0 chr3LHet 280953 280975 -2274516 + AT_rich Low_complexity Low_complexity 1 22 0 4 587 16426 168 102 88 chr3LHet 281028 285225 -2270266 - Gypsy3_I LTR Gypsy -1919 4258 1 4 587 1899 114 68 54 chr3LHet 285309 285848 -2269643 - IDEFIX_LTR LTR Gypsy 0 594 1 4 587 278 119 0 0 chr3LHet 285816 285858 -2269633 + BARI1 DNA Tc1 3 44 -1706 4 587 2940 94 12 33 chr3LHet 285866 286334 -2269157 - QUASIMODO_LTR LTR Gypsy 0 658 63 4 587 2694 13 0 0 chr3LHet 286584 286882 -2268609 - DIVER2_LTR LTR Pao -36 349 52 4 587 3594 30 44 0 chr3LHet 286882 287313 -2268178 - DIVER2_I LTR Pao -75 4072 3623 4 587 3463 27 7 0 chr3LHet 287313 287716 -2267775 - PROTOP_A DNA P 0 1105 700 4 587 5747 25 52 14 chr3LHet 287743 288560 -2266931 - PROTOP DNA P -3727 753 1 4 587 4267 29 6 0 chr3LHet 288560 289048 -2266443 - DIVER2_I LTR Pao -518 3629 3139 4 587 5721 40 55 18 chr3LHet 289045 289786 -2265705 - DIVER2_I LTR Pao -1553 2594 1826 4 587 1310 169 17 53 chr3LHet 289786 290086 -2265405 + Gypsy5_LTR LTR Gypsy 1 289 -141 4 587 23 33 0 0 chr3LHet 290119 290149 -2265342 + AT_rich Low_complexity Low_complexity 1 30 0 4 587 10773 42 39 18 chr3LHet 290227 291598 -2263893 - DIVER2_I LTR Pao -2318 1829 429 4 587 3432 52 33 0 chr3LHet 291836 292261 -2263230 - DIVER2_I LTR Pao -3708 439 1 4 587 3138 48 16 0 chr3LHet 292261 292640 -2262851 - DIVER2_LTR LTR Pao 0 385 1 4 587 28 0 0 0 chr3LHet 292787 292815 -2262676 + AT_rich Low_complexity Low_complexity 1 28 0 4 587 24 53 0 0 chr3LHet 294553 294591 -2260900 + AT_rich Low_complexity Low_complexity 1 38 0 4 587 31 0 0 0 chr3LHet 294615 294646 -2260845 + AT_rich Low_complexity Low_complexity 1 31 0 4 587 5442 45 55 7 chr3LHet 294646 295332 -2260159 - DMCR1A LINE CR1 0 4470 3752 4 587 5711 60 23 27 chr3LHet 295331 296099 -2259392 - DMCR1A LINE CR1 -1144 3326 2562 4 587 1480 67 161 0 chr3LHet 296095 296398 -2259093 - DMCR1A LINE CR1 -2375 2095 1744 4 587 339 105 0 0 chr3LHet 296414 296471 -2259020 + (TAA)n Simple_repeat Simple_repeat 3 59 0 4 587 2018 97 74 3 chr3LHet 296473 296771 -2258720 + MDG1_LTR LTR Gypsy 94 412 -30 4 587 431 168 103 34 chr3LHet 296771 296888 -2258603 + MDG1_I LTR Gypsy 1 125 -6471 4 587 47423 37 16 16 chr3LHet 296888 302805 -2252686 + MDG1_I LTR Gypsy 382 6296 -300 4 587 755 89 6 76 chr3LHet 302774 302932 -2252559 + MDG1_I LTR Gypsy 6450 6596 0 4 587 2397 95 112 10 chr3LHet 302932 303316 -2252175 + MDG1_LTR LTR Gypsy 1 423 -19 4 587 1755 46 32 0 chr3LHet 303306 303523 -2251968 - DMCR1A LINE CR1 -2724 1746 1523 4 587 259 160 60 0 chr3LHet 303569 303619 -2251872 - DM297_LTR LTR Gypsy 0 414 362 4 587 522 104 0 0 chr3LHet 303623 303690 -2251801 + DNAREP1_DM LINE Penelope 13 79 -515 4 587 216 0 0 0 chr3LHet 304823 304847 -2250644 + (AATAG)n Simple_repeat Simple_repeat 4 27 0 4 587 1846 114 77 0 chr3LHet 304914 305212 -2250279 - MAX_LTR LTR Pao 0 321 1 4 587 37087 29 12 8 chr3LHet 305216 309583 -2245908 - MAX_I LTR Pao 0 7914 3529 4 587 2295 52 0 7 chr3LHet 309588 309880 -2245611 - MAX_I LTR Pao -4829 3085 2796 4 587 8569 87 91 53 chr3LHet 309893 311361 -2244130 - MAX_I LTR Pao -5528 2386 864 4 587 845 65 9 0 chr3LHet 311360 311468 -2244023 - MAX_I LTR Pao -7249 665 557 4 587 316 237 0 30 chr3LHet 311714 311814 -2243677 + (TATATG)n Simple_repeat Simple_repeat 6 102 0 4 587 310 326 24 89 chr3LHet 311838 312084 -2243407 - ACCORD2_I LTR Gypsy -6457 755 526 4 587 2180 327 8 17 chr3LHet 312699 313542 -2241949 - MICROPIA_I LTR Gypsy -583 3893 3058 4 587 715 346 34 17 chr3LHet 313548 314072 -2241419 - MICROPIA_I LTR Gypsy -3037 1439 907 4 587 296 286 68 85 chr3LHet 314153 314329 -2241162 - MICROPIA_I LTR Gypsy -4303 173 1 4 587 295 323 41 91 chr3LHet 314356 314598 -2240893 - ACCORD2_I LTR Gypsy -6457 755 526 4 587 6063 5 0 0 chr3LHet 314620 315285 -2240206 - FW_DM LINE Jockey 0 4692 4028 4 587 22218 3 0 0 chr3LHet 315282 317709 -2237782 - FW_DM LINE Jockey -2187 2505 86 4 587 2202 326 8 17 chr3LHet 318270 319113 -2236378 - MICROPIA_I LTR Gypsy -583 3893 3058 4 587 758 292 36 28 chr3LHet 319136 319523 -2235968 + QUASIMODO_I LTR Gypsy 1340 1729 -4331 4 587 683 266 117 31 chr3LHet 319816 320107 -2235384 + IDEFIX_I LTR Gypsy 1429 1744 -3884 4 587 1376 288 70 49 chr3LHet 320100 321018 -2234473 + QUASIMODO_I LTR Gypsy 4505 5441 -619 4 587 24 0 0 0 chr3LHet 321164 321188 -2234303 + AT_rich Low_complexity Low_complexity 1 24 0 4 587 615 170 0 0 chr3LHet 321631 321731 -2233760 - NOMAD_I LTR Gypsy 0 6572 6473 4 587 330 160 0 0 chr3LHet 321747 321797 -2233694 - NOMAD_I LTR Gypsy -491 6081 6032 4 587 5164 162 107 41 chr3LHet 322532 323637 -2231854 - NOMAD_I LTR Gypsy -741 5831 4653 4 587 1985 241 71 50 chr3LHet 323637 324517 -2230974 + Gypsy12A_LTR LTR Gypsy 1 820 -1516 4 587 5530 43 56 1 chr3LHet 324517 325199 -2230292 - DMCR1A LINE CR1 0 4470 3752 4 587 5739 59 32 7 chr3LHet 325198 325878 -2229613 - DMCR1A LINE CR1 -1144 3326 2638 4 587 253 0 54 0 chr3LHet 325878 325915 -2229576 + (TAGTG)n Simple_repeat Simple_repeat 3 41 0 4 587 5739 59 32 7 chr3LHet 325915 325980 -2229511 - DMCR1A LINE CR1 -1833 2637 2562 4 587 6856 57 60 0 chr3LHet 325976 326936 -2228555 - DMCR1A LINE CR1 -2375 2095 1078 4 587 6232 31 11 3 chr3LHet 326934 327671 -2227820 - DMCR1A LINE CR1 -3727 743 1 4 587 2495 175 53 61 chr3LHet 327709 328386 -2227105 + Gypsy12A_LTR LTR Gypsy 760 1431 -849 4 587 2943 114 15 71 chr3LHet 328400 328919 -2226572 + Gypsy12_LTR LTR Gypsy 1847 2336 0 4 587 1710 143 12 0 chr3LHet 328919 329178 -2226313 - NOMAD_I LTR Gypsy -1916 4656 4395 4 587 3402 159 67 2 chr3LHet 329179 329758 -2225733 - NOMAD_I LTR Gypsy -2441 4131 3515 4 587 4102 153 73 4 chr3LHet 329750 330789 -2224702 - NOMAD_I LTR Gypsy -3210 3362 2056 4 587 426 100 14 28 chr3LHet 332432 332504 -2222987 - DMTOM1_LTR LTR Gypsy 0 410 340 4 587 611 180 50 61 chr3LHet 332495 332705 -2222786 - DMTOM1_LTR LTR Gypsy -19 488 284 4 587 859 126 0 77 chr3LHet 332928 333083 -2222408 - DM176_I LTR Gypsy 0 6420 6278 4 587 1115 146 0 5 chr3LHet 333082 333275 -2222216 - DM297_I LTR Gypsy -486 5681 5490 4 587 2792 216 9 9 chr3LHet 333273 333956 -2221535 - DM297_I LTR Gypsy -1433 4734 4052 4 587 1213 313 23 17 chr3LHet 333960 334487 -2221004 - ROVER-I_DM LTR Gypsy -2237 4347 3818 4 587 3297 156 126 1 chr3LHet 334488 335328 -2220163 - NOMAD_I LTR Gypsy -3571 3001 2056 4 587 426 100 14 28 chr3LHet 336971 337043 -2218448 - DMTOM1_LTR LTR Gypsy 0 410 340 4 587 611 180 50 61 chr3LHet 337034 337244 -2218247 - DMTOM1_LTR LTR Gypsy -19 488 284 4 587 859 126 0 77 chr3LHet 337467 337622 -2217869 - DM176_I LTR Gypsy 0 6420 6278 4 587 1115 146 0 5 chr3LHet 337621 337814 -2217677 - DM297_I LTR Gypsy -486 5681 5490 4 587 2811 214 9 9 chr3LHet 337812 338495 -2216996 - DM297_I LTR Gypsy -1433 4734 4052 4 587 7576 294 38 31 chr3LHet 338499 341933 -2213558 - ROVER-I_DM LTR Gypsy -2237 4347 890 4 587 4022 0 0 0 chr3LHet 341988 342416 -2213075 - ROO_LTR LTR Pao 0 428 1 4 587 262 191 43 43 chr3LHet 342441 342556 -2212935 + T-rich Low_complexity Low_complexity 3 117 0 4 587 243 264 116 77 chr3LHet 342774 343127 -2212364 - ROVER-I_DM LTR Gypsy -6217 367 1 4 587 426 100 14 28 chr3LHet 343127 343190 -2212301 - DMTOM1_LTR LTR Gypsy 0 410 349 4 587 585 156 40 16 chr3LHet 343190 343314 -2212177 - DMTOM1_LTR LTR Gypsy 0 410 284 4 587 263 152 87 43 chr3LHet 343331 343400 -2212091 - DM176_LTR LTR Gypsy -141 366 295 4 587 233 200 52 52 chr3LHet 343965 344023 -2211468 - MAX_I LTR Pao -1205 6709 6652 4 587 1299 328 47 22 chr3LHet 344122 344896 -2210595 - DIVER2_I LTR Pao -488 3659 2867 4 587 3493 10 0 3 chr3LHet 345089 345473 -2210018 - DIVER2_LTR LTR Pao 0 385 3 4 587 293 372 13 0 chr3LHet 346341 346494 -2208997 - TRAM_I LTR Pao -550 2158 2004 4 587 192 97 0 0 chr3LHet 346546 346577 -2208914 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 4 587 444 121 0 0 chr3LHet 346609 346675 -2208816 - G3_DM LINE Jockey -20 4585 4520 4 587 3199 0 3 0 chr3LHet 346675 347020 -2208471 + Invader4_LTR LTR Gypsy 1 346 0 4 587 10200 8 0 2 chr3LHet 347020 348131 -2207360 + Invader4_I LTR Gypsy 1 1109 -1304 4 587 6546 8 38 0 chr3LHet 348112 348853 -2206638 + Invader4_I LTR Gypsy 1246 2014 -399 4 587 180 0 0 0 chr3LHet 348853 348873 -2206618 + (G)n Simple_repeat Simple_repeat 1 20 0 4 587 3167 14 24 0 chr3LHet 348873 349136 -2206355 + Invader4_I LTR Gypsy 2141 2411 -2 4 587 3239 0 0 0 chr3LHet 349136 349482 -2206009 + Invader4_LTR LTR Gypsy 1 346 0 4 587 2094 33 0 0 chr3LHet 349482 349723 -2205768 - G3_DM LINE Jockey -82 4523 4283 4 587 36488 18 12 5 chr3LHet 349738 353933 -2201558 - G3_DM LINE Jockey -379 4226 1 4 587 4185 288 91 60 chr3LHet 354909 357822 -2197669 + Gypsy4_I LTR Gypsy 674 3852 -2569 4 587 8345 63 92 10 chr3LHet 357851 359752 -2195739 + DMCR1A LINE CR1 2346 4401 -69 4 587 1853 68 109 0 chr3LHet 360155 360475 -2195016 + DOC5_DM LINE Jockey 1 355 -4327 4 587 664 110 15 23 chr3LHet 360474 360604 -2194887 + DOC5_DM LINE Jockey 588 716 -3966 4 587 21434 53 74 39 chr3LHet 360596 363750 -2191741 + DOC5_DM LINE Jockey 1419 4682 0 4 587 24 0 0 0 chr3LHet 363750 363774 -2191717 + AT_rich Low_complexity Low_complexity 1 24 0 4 587 2368 36 45 23 chr3LHet 364482 364791 -2190700 - NINJA_LTR LTR Pao -1 316 1 4 587 23389 26 27 13 chr3LHet 364791 369530 -2185961 - NINJA_I LTR Pao 0 6011 1 4 587 2525 47 0 22 chr3LHet 369531 369854 -2185637 - NINJA_LTR LTR Pao -1 316 1 4 587 1221 321 46 37 chr3LHet 370404 371106 -2184385 - DIVER2_I LTR Pao -508 3639 2932 4 587 298 346 38 22 chr3LHet 372352 372535 -2182956 - DIVER2_I LTR Pao -550 2158 2004 4 587 3391 81 34 4 chr3LHet 372605 373076 -2182415 - G3_DM LINE Jockey -4039 566 82 4 587 5274 56 108 2 chr3LHet 373401 375139 -2180352 + G4_DM LINE Jockey 1902 3856 0 4 587 390 315 13 26 chr3LHet 375366 375519 -2179972 + DIVER2_I LTR Pao 2239 2389 -1758 4 587 511 155 92 15 chr3LHet 375867 375998 -2179493 + Gypsy6_LTR LTR Gypsy 156 296 -111 4 587 482 160 97 22 chr3LHet 376600 376734 -2178757 + Gypsy6_LTR LTR Gypsy 156 299 -108 4 587 795 308 24 24 chr3LHet 377226 377605 -2177886 + DIVER2_I LTR Pao 2981 3359 -788 4 587 2698 69 66 11 chr3LHet 377689 378055 -2177436 + DMCR1A LINE CR1 3584 3969 -501 4 587 396 77 0 0 chr3LHet 378763 378815 -2176676 + DMCR1A LINE CR1 3433 3484 -986 4 587 656 97 0 11 chr3LHet 378818 378912 -2176579 + DMCR1A LINE CR1 3674 3766 -704 4 587 44 63 0 0 chr3LHet 379674 379753 -2175738 + AT_rich Low_complexity Low_complexity 1 79 0 4 587 17298 43 36 7 chr3LHet 379838 382003 -2173488 + DMCR1A LINE CR1 2110 4338 -132 4 587 3345 103 174 0 chr3LHet 382024 382691 -2172800 - ACCORD2_I LTR Gypsy -747 6465 5650 4 587 2695 66 11 0 chr3LHet 382714 383062 -2172429 + Baggins1 LINE LOA 298 649 -4804 4 587 5739 41 88 0 chr3LHet 383095 383807 -2171684 + Baggins1 LINE LOA 2868 3642 -1811 4 587 1675 67 9 0 chr3LHet 383806 384016 -2171475 + Baggins1 LINE LOA 3769 3980 -1473 4 587 345 70 0 0 chr3LHet 384011 384054 -2171437 + Baggins1 LINE LOA 4495 4537 -916 4 587 5543 53 42 1 chr3LHet 384051 384744 -2170747 + Baggins1 LINE LOA 4733 5453 0 4 587 18749 78 119 13 chr3LHet 384756 387561 -2167930 - ACCORD2_I LTR Gypsy -1584 5628 2528 4 587 617 103 62 0 chr3LHet 387735 387832 -2167659 - DMRT1A LINE R1 -1 5182 5080 4 587 1374 110 250 0 chr3LHet 387843 388307 -2167184 - DMRT1A LINE R1 -258 4925 4346 4 587 4749 105 184 18 chr3LHet 388304 389125 -2166366 - DMRT1A LINE R1 -953 4230 3274 4 587 7905 100 58 0 chr3LHet 389140 390285 -2165206 - DMRT1A LINE R1 -2974 2209 999 4 587 308 131 0 16 chr3LHet 390283 390345 -2165146 - DMRT1A LINE R1 -4596 587 527 4 587 6019 63 50 0 chr3LHet 390340 391147 -2164344 - DMRT1B LINE R1 -216 4967 4121 4 587 808 97 0 9 chr3LHet 391135 391249 -2164242 - DMRT1B LINE R1 -2121 3062 2950 4 587 230 65 0 0 chr3LHet 391262 391293 -2164198 - DMRT1A LINE R1 -5150 33 3 4 587 1379 117 56 65 chr3LHet 391309 391630 -2163861 - ACCORD2_I LTR Gypsy -5338 1874 1557 4 587 30 0 0 0 chr3LHet 391662 391692 -2163799 + AT_rich Low_complexity Low_complexity 1 30 0 4 587 5892 87 1 31 chr3LHet 391754 392623 -2162868 - ACCORD2_I LTR Gypsy -4619 2593 1751 4 587 1931 138 142 21 chr3LHet 392634 393186 -2162305 - ACCORD2_I LTR Gypsy -5845 1367 517 4 73 6969 150 20 4 chr3LHet 393164 394279 -2161212 - Gypsy5_I LTR Gypsy -3006 3503 2371 4 588 926 207 105 67 chr3LHet 394270 394642 -2160849 - Gypsy5_I LTR Gypsy -6086 423 38 4 588 328 115 19 37 chr3LHet 395685 395739 -2159752 - Gypsy5_I LTR Gypsy -6456 53 1 4 588 24 32 0 0 chr3LHet 395816 395847 -2159644 + AT_rich Low_complexity Low_complexity 1 31 0 4 588 15177 57 46 38 chr3LHet 395860 398062 -2157429 - DOC5_DM LINE Jockey -1045 3637 1419 4 588 2791 70 3 8 chr3LHet 398054 398441 -2157050 - DOC5_DM LINE Jockey -3966 716 332 4 588 9868 15 0 0 chr3LHet 398441 399546 -2155945 - PROTOP_A DNA P 0 1105 1 4 588 2163 51 72 19 chr3LHet 399546 399865 -2155626 - DOC5_DM LINE Jockey -4344 338 3 4 588 767 339 58 24 chr3LHet 400214 400715 -2154776 + NINJA_I LTR Pao 4781 5298 -713 4 588 564 78 0 0 chr3LHet 400961 401038 -2154453 - DMRT1B LINE R1 0 5183 5107 4 588 2153 142 120 2 chr3LHet 401047 401973 -2153518 - DMRT1B LINE R1 -418 4765 3703 4 588 2520 56 44 0 chr3LHet 401971 402292 -2153199 - DMRT1B LINE R1 -1899 3284 2950 4 588 230 65 0 0 chr3LHet 402305 402336 -2153155 - DMRT1A LINE R1 -5150 33 3 4 588 1238 132 47 89 chr3LHet 402350 402731 -2152760 - ACCORD2_I LTR Gypsy -5338 1874 1510 4 588 5892 87 1 31 chr3LHet 402794 403663 -2151828 - ACCORD2_I LTR Gypsy -4619 2593 1751 4 588 932 127 20 61 chr3LHet 403674 403870 -2151621 - ACCORD2_I LTR Gypsy -5845 1367 1204 4 588 868 142 0 7 chr3LHet 403869 404004 -2151487 - ACCORD2_I LTR Gypsy -6584 628 495 4 588 3284 164 134 25 chr3LHet 404008 405404 -2150087 + FW3_DM LINE Jockey 1 2171 -2554 4 588 11096 43 19 1 chr3LHet 405404 406740 -2148751 + TC1_DM DNA Tc1 1 1360 -306 4 588 832 29 10 0 chr3LHet 406730 406832 -2148659 + TC1_DM DNA Tc1 1564 1666 0 4 588 6820 71 31 83 chr3LHet 406832 407899 -2147592 + FW3_DM LINE Jockey 1302 2312 -820 4 588 729 79 20 0 chr3LHet 407900 408001 -2147490 - FW3_DM LINE Jockey -707 2425 2323 4 588 1091 139 139 5 chr3LHet 408937 409146 -2146345 + DNAREP1_DM LINE Penelope 209 445 -149 4 588 291 302 18 36 chr3LHet 409147 409257 -2146234 + Gypsy10_I LTR Gypsy 2369 2476 -2802 4 588 470 323 119 20 chr3LHet 409310 409664 -2145827 + Gypsy_DS LTR Gypsy 3296 3684 -3838 4 588 1448 134 65 16 chr3LHet 409937 410244 -2145247 + DNAREP1_DM LINE Penelope 1 360 -234 4 588 201 74 0 0 chr3LHet 410874 410901 -2144590 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 588 526 51 13 13 chr3LHet 411278 411357 -2144134 + (TA)n Simple_repeat Simple_repeat 1 79 0 4 588 1003 153 6 0 chr3LHet 411359 411522 -2143969 - Gypsy2_LTR LTR Gypsy -161 192 29 4 588 939 123 97 0 chr3LHet 411526 411681 -2143810 - Gypsy2_I LTR Gypsy -175 5960 5791 4 588 9428 12 29 0 chr3LHet 411681 412755 -2142736 - PROTOP_A DNA P 0 1105 1 4 588 2651 88 22 6 chr3LHet 412755 413120 -2142371 - Gypsy2_I LTR Gypsy -338 5797 5427 4 588 1035 97 13 13 chr3LHet 413119 413276 -2142215 - Gypsy2_I LTR Gypsy -864 5271 5115 4 588 3955 107 278 62 chr3LHet 413265 414077 -2141414 - Gypsy2_I LTR Gypsy -1390 4745 3758 4 588 12821 175 83 61 chr3LHet 414076 417236 -2138255 - Gypsy2_I LTR Gypsy -2587 3548 319 4 588 747 186 162 0 chr3LHet 417229 417396 -2138095 - Gypsy2_LTR LTR Gypsy -159 194 1 4 588 2231 66 65 19 chr3LHet 417940 418263 -2137228 + DOC3_DM LINE Jockey 3374 3711 -1029 4 588 5777 49 14 3 chr3LHet 418261 418974 -2136517 - DMCR1A LINE CR1 -1837 2633 1913 4 588 559 343 57 16 chr3LHet 419064 419449 -2136042 + Gypsy12_I LTR Gypsy 2959 3359 -2187 4 588 6768 42 71 1 chr3LHet 419690 420679 -2134812 - DMCR1A LINE CR1 -1098 3372 2315 4 588 2297 63 123 0 chr3LHet 421571 421888 -2133603 - HELENA_RT LINE Jockey -327 990 635 4 588 302 176 53 26 chr3LHet 421993 422069 -2133422 - DM412B_LTR LTR Gypsy -262 309 232 4 588 423 365 42 11 chr3LHet 422110 422395 -2133096 - Ulysses_I LTR Gypsy -637 5744 5451 4 588 315 269 130 8 chr3LHet 422815 422946 -2132545 - Ulysses_I LTR Gypsy -1614 4767 4621 4 588 590 153 248 25 chr3LHet 423832 423993 -2131498 + DMCR1A LINE CR1 1272 1468 -3002 4 588 483 182 0 0 chr3LHet 423999 424076 -2131415 + DMCR1A LINE CR1 1698 1774 -2696 4 588 1199 114 180 0 chr3LHet 424073 424284 -2131207 + DMCR1A LINE CR1 1994 2242 -2228 4 588 14110 66 65 10 chr3LHet 424289 426237 -2129254 + DMCR1A LINE CR1 2346 4401 -69 4 588 2245 66 109 0 chr3LHet 426640 426960 -2128531 + DOC5_DM LINE Jockey 1 355 -4327 4 588 664 110 15 23 chr3LHet 426959 427089 -2128402 + DOC5_DM LINE Jockey 588 716 -3966 4 588 21277 49 85 41 chr3LHet 427081 430206 -2125285 + DOC5_DM LINE Jockey 1419 4682 0 4 588 1006 318 117 25 chr3LHet 431110 431836 -2123655 - DIVER2_I LTR Pao -488 3659 2867 4 588 374 359 116 5 chr3LHet 432919 433291 -2122200 - DIVER2_I LTR Pao -2325 1822 1410 4 588 3034 95 75 2 chr3LHet 433191 433643 -2121848 - G3_DM LINE Jockey -4039 566 82 4 588 16539 26 20 1 chr3LHet 433773 435708 -2119783 + TRANSIB2 DNA Transib 1 1973 -871 4 588 3063 26 0 0 chr3LHet 435705 436054 -2119437 + TRANSIB2 DNA Transib 1763 2111 -733 4 588 1533 23 0 0 chr3LHet 436102 436275 -2119216 + TRANSIB2 DNA Transib 2672 2844 0 4 588 22 0 0 0 chr3LHet 436400 436422 -2119069 + AT_rich Low_complexity Low_complexity 1 22 0 4 588 4986 69 63 0 chr3LHet 436464 437127 -2118364 + DMRT1B LINE R1 3371 4075 -1108 4 588 8658 51 71 2 chr3LHet 437124 438225 -2117266 + DMCR1A LINE CR1 13 1189 -3281 4 588 4685 54 12 0 chr3LHet 438230 438804 -2116687 + DMCR1A LINE CR1 1878 2458 -2012 4 588 1345 72 0 0 chr3LHet 439055 439221 -2116270 + DMCR1A LINE CR1 1024 1189 -3281 4 588 4685 54 12 0 chr3LHet 439226 439800 -2115691 + DMCR1A LINE CR1 1878 2458 -2012 4 588 12738 62 24 10 chr3LHet 444258 446021 -2109470 + DMCR1A LINE CR1 2455 4242 -228 4 588 1371 172 19 4 chr3LHet 446088 446350 -2109141 + MICROPIA_I LTR Gypsy 273 538 -3938 4 588 8930 39 2 0 chr3LHet 446544 447695 -2107796 + PROTOP_B DNA P 1 1153 0 4 588 1943 80 0 0 chr3LHet 447851 448137 -2107354 - Jockey2 LINE Jockey -21 3407 3122 4 588 2520 56 96 8 chr3LHet 448135 448512 -2106979 - Jockey2 LINE Jockey -513 2915 2506 4 588 12738 62 24 10 chr3LHet 451698 453461 -2102030 + DMCR1A LINE CR1 2455 4242 -228 4 588 1371 172 19 4 chr3LHet 453528 453790 -2101701 + MICROPIA_I LTR Gypsy 273 538 -3938 4 588 8930 39 2 0 chr3LHet 453984 455135 -2100356 + PROTOP_B DNA P 1 1153 0 4 588 1943 80 0 0 chr3LHet 455291 455577 -2099914 - Jockey2 LINE Jockey -21 3407 3122 4 588 4095 54 156 0 chr3LHet 455575 456264 -2099227 - Jockey2 LINE Jockey -513 2915 2120 4 588 2424 107 21 3 chr3LHet 456275 456659 -2098832 - Jockey2 LINE Jockey -1477 1951 1561 4 588 905 113 9 8 chr3LHet 457015 457192 -2098299 - Jockey2 LINE Jockey -2111 1317 1187 4 588 348 43 0 0 chr3LHet 457220 457266 -2098225 - Jockey2 LINE Jockey -2852 576 531 4 588 1469 304 45 30 chr3LHet 457263 457976 -2097515 - LINEJ1_DM LINE Jockey -3342 1678 955 4 588 201 74 0 0 chr3LHet 459956 459983 -2095508 + (TA)n Simple_repeat Simple_repeat 1 27 0 4 588 444 19 0 0 chr3LHet 460359 460412 -2095079 + (TA)n Simple_repeat Simple_repeat 1 53 0 4 588 930 153 6 0 chr3LHet 460414 460577 -2094914 - Gypsy2_LTR LTR Gypsy -161 192 29 4 588 865 123 97 0 chr3LHet 460581 460736 -2094755 - Gypsy2_I LTR Gypsy -175 5960 5791 4 588 4814 38 75 28 chr3LHet 460736 461709 -2093782 - PROTOP_A DNA P 0 1105 87 4 588 805 122 20 13 chr3LHet 461692 461842 -2093649 - Gypsy2_I LTR Gypsy -870 5265 5115 4 588 332 125 31 15 chr3LHet 461831 461896 -2093595 - Gypsy2_I LTR Gypsy -1390 4745 4680 4 588 4817 282 98 19 chr3LHet 461939 463882 -2091609 - Gypsy3_I LTR Gypsy -1612 4565 2470 4 588 989 154 39 59 chr3LHet 464034 464289 -2091202 - Gypsy5_LTR LTR Gypsy -180 250 1 4 588 5106 155 12 0 chr3LHet 464289 465205 -2090286 - Gypsy5_I LTR Gypsy 0 6509 5583 4 588 10564 151 63 3 chr3LHet 465206 467195 -2088296 - Gypsy5_I LTR Gypsy -1485 5024 2917 4 588 1933 132 149 0 chr3LHet 467197 467707 -2087784 - Gypsy5_I LTR Gypsy -3747 2762 2177 4 588 7078 186 16 17 chr3LHet 467705 469245 -2086246 - Gypsy5_I LTR Gypsy -4934 1575 38 4 588 2182 24 13 0 chr3LHet 469362 469884 -2085607 - TRANSIB2 DNA Transib 0 2844 2235 4 588 6543 33 12 1 chr3LHet 469884 470728 -2084763 - TRANSIB2 DNA Transib -1991 853 1 4 588 336 77 19 37 chr3LHet 471498 471552 -2083939 - Gypsy5_I LTR Gypsy -6456 53 1 4 588 24 32 0 0 chr3LHet 471630 471661 -2083830 + AT_rich Low_complexity Low_complexity 1 31 0 4 588 1025 184 20 53 chr3LHet 471694 471993 -2083498 - Gypsy5_LTR LTR Gypsy -141 289 1 4 588 10539 39 6 5 chr3LHet 471993 473335 -2082156 + G5A_DM LINE Jockey 1496 2838 -3 4 588 1046 115 93 93 chr3LHet 473375 473719 -2081772 - STALKER4_I LTR Gypsy -55 6475 6132 4 588 3907 34 0 2 chr3LHet 473719 474218 -2081273 - PROTOP_A DNA P 0 1105 608 4 588 2272 11 0 0 chr3LHet 474218 474484 -2081007 + Invader2_LTR LTR Gypsy 1 266 0 4 588 477 47 47 0 chr3LHet 474499 474584 -2080907 - PROTOP DNA P -3733 747 659 4 588 4361 25 26 19 chr3LHet 474583 475151 -2080340 - PROTOP_A DNA P -533 572 1 4 588 12623 87 32 3 chr3LHet 475151 477081 -2078410 - STALKER4_I LTR Gypsy -388 6142 4155 4 588 4366 61 102 29 chr3LHet 477096 478033 -2077458 - PROTOP_B DNA P -194 959 20 4 588 234 62 0 0 chr3LHet 478033 478065 -2077426 + (TTA)n Simple_repeat Simple_repeat 2 33 0 4 588 336 77 19 37 chr3LHet 478140 478194 -2077297 - Gypsy5_I LTR Gypsy -6456 53 1 4 588 24 32 0 0 chr3LHet 478272 478303 -2077188 + AT_rich Low_complexity Low_complexity 1 31 0 4 588 1096 180 20 53 chr3LHet 478336 478635 -2076856 - Gypsy5_LTR LTR Gypsy -141 289 1 4 588 1497 107 134 0 chr3LHet 478676 478929 -2076562 - Gypsy2_I LTR Gypsy -4442 1693 1407 4 588 729 184 150 6 chr3LHet 479045 479225 -2076266 - Gypsy2_LTR LTR Gypsy -147 206 1 4 588 25 31 0 0 chr3LHet 479446 479478 -2076013 + AT_rich Low_complexity Low_complexity 1 32 0 4 588 358 270 18 9 chr3LHet 479773 479885 -2075606 + PROTOP_B DNA P 64 176 -977 4 588 5387 99 57 1 chr3LHet 480225 481084 -2074407 - S_DM DNA Tc1 -637 1099 193 4 588 450 138 0 0 chr3LHet 481076 481156 -2074335 + S_DM DNA Tc1 1657 1736 0 4 588 1148 167 139 43 chr3LHet 481156 481593 -2073898 - DNAREP1_DM LINE Penelope -108 486 8 4 588 2037 138 107 114 chr3LHet 481649 482247 -2073244 - DNAREP1_DM LINE Penelope 0 594 1 4 588 45 69 0 0 chr3LHet 482259 482346 -2073145 + AT_rich Low_complexity Low_complexity 1 87 0 4 588 5516 48 15 7 chr3LHet 482600 483330 -2072161 - DMCR1A LINE CR1 -2909 1561 826 4 588 5506 42 0 11 chr3LHet 483328 484050 -2071441 - DMCR1A LINE CR1 -3755 715 2 4 588 461 62 0 0 chr3LHet 484063 484128 -2071363 - Jockey2 LINE Jockey -158 3270 3206 4 588 1909 89 93 27 chr3LHet 484142 484442 -2071049 - Jockey2 LINE Jockey -2245 1183 864 4 588 822 87 495 0 chr3LHet 484441 484691 -2070800 - Jockey2 LINE Jockey -2669 759 386 4 588 383 333 40 28 chr3LHet 484690 484940 -2070551 - LINEJ1_DM LINE Jockey -3814 1206 954 4 588 412 66 16 0 chr3LHet 485244 485305 -2070186 - Jockey2 LINE Jockey -3118 310 249 4 588 539 165 17 0 chr3LHet 485418 485533 -2069958 - Jockey2 LINE Jockey -2017 1411 1295 4 588 480 141 0 0 chr3LHet 485511 485596 -2069895 - Jockey2 LINE Jockey -3178 250 166 4 588 268 182 7 219 chr3LHet 485638 485793 -2069698 - R1-2_DM LINE R1 -338 5018 4897 4 588 6200 140 50 4 chr3LHet 486141 487447 -2068044 - R1-2_DM LINE R1 -930 4426 2356 4 588 3703 107 197 6 chr3LHet 487503 488730 -2066761 - R1-2_DM LINE R1 -3135 2221 365 4 588 1557 79 13 17 chr3LHet 488706 488937 -2066554 - R1-2_DM LINE R1 -2986 230 1 4 588 2963 100 106 19 chr3LHet 489007 489536 -2065955 - DNAREP1_DM LINE Penelope -19 575 1 4 588 28 48 0 0 chr3LHet 490343 490385 -2065106 + AT_rich Low_complexity Low_complexity 1 42 0 4 588 272 240 78 64 chr3LHet 490385 490666 -2064825 + MAX_LTR LTR Pao 3 287 -34 4 588 494 207 60 0 chr3LHet 490769 490885 -2064606 + MAX_I LTR Pao 66 188 -7726 4 588 247 269 26 80 chr3LHet 491009 491122 -2064369 + BS3_DM LINE Jockey 822 928 -862 4 588 252 109 0 21 chr3LHet 491673 491720 -2063771 + DM297_LTR LTR Gypsy 283 328 -86 4 588 663 184 44 40 chr3LHet 491772 491998 -2063493 + DM297_I LTR Gypsy 1 227 -5940 4 588 946 125 0 0 chr3LHet 492121 492281 -2063210 + DNAREP1_DM LINE Penelope 99 258 -336 4 588 1819 76 11 11 chr3LHet 492288 492554 -2062937 + R1-2_DM LINE R1 1026 1291 -1925 4 588 4209 183 15 22 chr3LHet 492553 493492 -2061999 + DM297_I LTR Gypsy 520 1451 -4716 4 588 419 147 10 21 chr3LHet 493532 493629 -2061862 + Invader2_LTR LTR Gypsy 132 227 -39 4 588 787 108 0 0 chr3LHet 493648 493768 -2061723 + Invader2_I LTR Gypsy 495 614 -3978 4 588 3325 86 113 6 chr3LHet 493770 494308 -2061183 + Invader2_I LTR Gypsy 886 1481 -3111 4 588 4433 87 52 42 chr3LHet 494510 495282 -2060209 + Invader2_I LTR Gypsy 3450 4229 -363 4 588 1829 51 157 25 chr3LHet 495300 495839 -2059652 + DMCR1A LINE CR1 7 665 -3805 4 588 8894 16 0 0 chr3LHet 495843 496904 -2058587 - FW_DM LINE Jockey 0 4692 3632 4 588 1047 98 110 85 chr3LHet 496908 497154 -2058337 + Invader2_I LTR Gypsy 3978 4229 -363 4 588 1829 51 157 25 chr3LHet 497172 497711 -2057780 + DMCR1A LINE CR1 7 665 -3805 4 588 5882 17 53 1 chr3LHet 497714 499105 -2056386 - FW_DM LINE Jockey 0 4692 3229 4 588 7358 8 22 3 chr3LHet 499110 500000 -2055491 + DMRT1A LINE R1 1280 2186 -2997 4 588 25628 18 28 0 chr3LHet 500000 502909 -2052582 + DMRT1A LINE R1 2187 5176 -7 4 588 14854 25 39 0 chr3LHet 502908 504675 -2050816 - FW_DM LINE Jockey -1459 3233 1398 4 588 6701 17 0 3 chr3LHet 504671 505429 -2050062 - FW_DM LINE Jockey -3936 756 1 4 588 835 11 0 0 chr3LHet 505456 505546 -2049945 + DMCR1A LINE CR1 654 743 -3727 4 588 5480 48 18 5 chr3LHet 505544 506855 -2048636 + DMCR1A LINE CR1 1078 2485 -1985 4 588 11833 62 73 11 chr3LHet 506872 508478 -2047013 + DMCR1A LINE CR1 2537 4242 -228 4 588 1481 171 19 4 chr3LHet 508545 508803 -2046688 + MICROPIA_I LTR Gypsy 273 534 -3942 4 588 3268 29 5 0 chr3LHet 508803 509180 -2046311 + STALKER4_LTR LTR Gypsy 1 379 -23 4 588 28 48 0 0 chr3LHet 509318 509360 -2046131 + AT_rich Low_complexity Low_complexity 1 42 0 4 588 2137 185 51 29 chr3LHet 509367 509879 -2045612 + Stalker2_I LTR Gypsy 291 813 -6589 4 588 31063 8 6 1 chr3LHet 509876 509888 -2045603 + STALKER4_I LTR Gypsy 2990 3002 -3528 4 588 281 47 0 23 chr3LHet 509888 509932 -2045559 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 4 588 31063 8 6 1 chr3LHet 509932 513445 -2042046 + STALKER4_I LTR Gypsy 3003 6530 0 4 588 3393 51 1 14 chr3LHet 513445 513884 -2041607 + STALKER4_LTR LTR Gypsy 1 399 -3 4 588 3456 19 0 48 chr3LHet 514032 514470 -2041021 - ROO_I LTR Pao -6167 2089 1673 4 588 1835 123 70 0 chr3LHet 514470 514770 -2040721 + MAX_LTR LTR Pao 1 321 0 4 588 2856 47 36 87 chr3LHet 514770 515209 -2040282 + MAX_I LTR Pao 1 417 -7497 4 588 1807 112 19 60 chr3LHet 515241 515556 -2039935 + Gypsy6A_LTR LTR Gypsy 1 302 -118 4 588 34 24 0 0 chr3LHet 515783 515824 -2039667 + AT_rich Low_complexity Low_complexity 1 41 0 4 588 2296 314 12 14 chr3LHet 516070 516867 -2038624 + Gypsy6_I LTR Gypsy 910 1705 -5307 4 588 3578 276 9 18 chr3LHet 516891 517903 -2037588 + Gypsy6_I LTR Gypsy 1984 2986 -4026 4 589 909 181 106 0 chr3LHet 531907 532106 -2023385 + MAX_LTR LTR Pao 102 321 0 4 589 9166 37 80 36 chr3LHet 532106 533094 -2022397 - ROO_I LTR Pao -6579 1677 730 4 589 492 132 0 0 chr3LHet 533094 533177 -2022314 + (CTG)n Simple_repeat Simple_repeat 1 83 0 4 589 9166 84 55 47 chr3LHet 533177 533766 -2021725 - ROO_I LTR Pao -7527 729 1 4 589 3443 24 41 12 chr3LHet 533766 534182 -2021309 - ROO_LTR LTR Pao 0 428 1 4 589 8349 48 15 0 chr3LHet 534182 535201 -2020290 + DMCR1A LINE CR1 2318 3351 -1119 4 589 1867 120 70 0 chr3LHet 535201 535501 -2019990 - MAX_LTR LTR Pao 0 321 1 4 589 58586 45 13 59 chr3LHet 535507 543927 -2011564 - MAX_I LTR Pao -2 7912 1 4 589 1855 123 70 0 chr3LHet 543927 544227 -2011264 - MAX_LTR LTR Pao 0 321 1 4 589 259 294 47 0 chr3LHet 544443 544528 -2010963 - Gypsy12_I LTR Gypsy -2139 3407 3319 4 589 16968 47 42 9 chr3LHet 544962 547115 -2008376 + DMCR1A LINE CR1 1913 4136 -334 4 589 1202 313 51 16 chr3LHet 548128 548677 -2006814 + Gypsy4_I LTR Gypsy 576 1143 -5145 4 589 1114 115 88 16 chr3LHet 548700 548894 -2006597 + DMCR1A LINE CR1 454 661 -3809 4 589 804 314 119 32 chr3LHet 548896 549636 -2005855 + Gypsy4_I LTR Gypsy 1220 2220 -3058 4 589 7088 279 65 12 chr3LHet 549646 552049 -2003442 + Gypsy4_I LTR Gypsy 2144 4673 -1615 4 589 2473 318 48 18 chr3LHet 552123 553320 -2002171 + Gypsy4_I LTR Gypsy 4871 6102 -186 4 589 24 0 0 0 chr3LHet 553591 553615 -2001876 + AT_rich Low_complexity Low_complexity 1 24 0 4 589 1387 79 164 4 chr3LHet 553682 553963 -2001528 + DMCR1A LINE CR1 4145 4470 0 4 589 1735 130 115 0 chr3LHet 553951 554289 -2001202 + Invader2_I LTR Gypsy 4216 4592 0 4 589 712 145 136 140 chr3LHet 554289 554554 -2000937 + Invader2_LTR LTR Gypsy 1 264 -2 4 589 379 189 0 0 chr3LHet 554554 554619 -2000872 + DM297_I LTR Gypsy 1931 1995 -4172 4 589 746 304 90 19 chr3LHet 554645 555023 -2000468 - NINJA_I LTR Pao -768 5243 4839 4 589 2769 320 69 10 chr3LHet 555138 556349 -1999142 - NINJA_I LTR Pao -1313 4698 3416 4 589 2243 315 78 29 chr3LHet 556384 558488 -1997003 - NINJA_I LTR Pao -2672 3339 1045 4 589 1195 106 0 0 chr3LHet 559518 559706 -1995785 + DM297_I LTR Gypsy 2137 2324 -3843 4 589 347 259 46 9 chr3LHet 560349 560458 -1995033 - FW_DM LINE Jockey -2306 2386 2274 4 589 628 287 44 9 chr3LHet 560496 560813 -1994678 - TOM_I LTR Gypsy -567 5545 5218 4 589 8895 17 2 14 chr3LHet 560830 561949 -1993542 + PROTOP_A DNA P 1 1105 0 4 589 489 153 9 43 chr3LHet 562091 562207 -1993284 - DNAREP1_DM LINE Penelope -260 334 223 4 589 215 0 67 0 chr3LHet 562529 562559 -1992932 + (TTTAA)n Simple_repeat Simple_repeat 1 32 0 4 589 238 238 94 47 chr3LHet 562559 562687 -1992804 - QUASIMODO_LTR LTR Gypsy -446 212 79 4 589 7705 32 54 23 chr3LHet 562759 563831 -1991660 - PROTOP_A DNA P 0 1105 1 4 589 24 32 0 0 chr3LHet 564338 564369 -1991122 + AT_rich Low_complexity Low_complexity 1 31 0 4 589 21 36 0 0 chr3LHet 564504 564532 -1990959 + AT_rich Low_complexity Low_complexity 1 28 0 4 589 21 0 0 0 chr3LHet 564765 564786 -1990705 + AT_rich Low_complexity Low_complexity 1 21 0 4 589 8094 18 9 0 chr3LHet 565918 566904 -1988587 + ROO_I LTR Pao 1673 2667 -5589 4 589 2257 4 4 0 chr3LHet 566904 567170 -1988321 - MDG3_LTR LTR Gypsy 0 267 1 4 589 42377 1 7 0 chr3LHet 567170 572124 -1983367 - MDG3_I LTR Gypsy 0 4986 1 4 589 2257 4 4 0 chr3LHet 572123 572389 -1983102 - MDG3_LTR LTR Gypsy 0 267 1 4 589 32337 24 19 1 chr3LHet 572389 577885 -1977606 + ROO_I LTR Pao 2664 8256 0 4 589 3338 21 21 16 chr3LHet 577885 578311 -1977180 + ROO_LTR LTR Pao 1 428 0 4 589 5297 57 121 0 chr3LHet 578311 579421 -1976070 - DMCR1A LINE CR1 -2148 2322 1078 4 589 3419 31 62 10 chr3LHet 579419 580107 -1975384 - DMCR1A LINE CR1 -3727 743 20 4 589 55 29 0 0 chr3LHet 580123 580192 -1975299 + AT_rich Low_complexity Low_complexity 1 69 0 4 589 234 160 60 0 chr3LHet 580250 580300 -1975191 - DM297_LTR LTR Gypsy 0 414 362 4 589 516 73 0 0 chr3LHet 580308 580376 -1975115 + DNAREP1_DM LINE Penelope 17 84 -510 4 589 961 221 5 0 chr3LHet 580511 580715 -1974776 - Gypsy3_I LTR Gypsy -299 5878 5674 4 589 3702 232 65 1 chr3LHet 580732 581650 -1973841 - Gypsy3_I LTR Gypsy -396 6616 4936 4 589 585 99 11 11 chr3LHet 581638 581730 -1973761 - Gypsy3_I LTR Gypsy -1549 4628 4537 4 589 1630 103 103 0 chr3LHet 581738 582009 -1973482 - Gypsy3_I LTR Gypsy -1745 4432 4134 4 589 556 111 0 22 chr3LHet 582008 582100 -1973391 - Gypsy3_I LTR Gypsy -2936 3241 3152 4 589 237 33 0 0 chr3LHet 582078 582108 -1973383 - Gypsy3_I LTR Gypsy -3426 2751 2722 4 589 2004 141 300 12 chr3LHet 582127 582932 -1972559 - Gypsy3_I LTR Gypsy -4223 1954 918 4 589 1402 215 55 91 chr3LHet 582943 583506 -1971985 - Gypsy3_I LTR Gypsy -5460 717 175 4 589 36 62 0 0 chr3LHet 583506 583570 -1971921 + AT_rich Low_complexity Low_complexity 1 64 0 4 589 665 170 30 133 chr3LHet 583620 583884 -1971607 - Gypsy3_LTR LTR Gypsy -161 237 1 4 589 790 109 229 37 chr3LHet 584020 584286 -1971205 - DNAREP1_DM LINE Penelope -44 550 196 4 589 1679 53 136 0 chr3LHet 584305 584548 -1970943 - DOC3_DM LINE Jockey -441 4299 4024 4 589 13750 46 21 0 chr3LHet 584544 586324 -1969167 - DOC3_DM LINE Jockey -1153 3587 1771 4 589 11220 20 20 0 chr3LHet 586318 587698 -1967793 - FW_DM LINE Jockey 0 4692 3286 4 589 9033 17 28 0 chr3LHet 587697 588568 -1966923 - FW_DM LINE Jockey -1595 3097 2203 4 589 180 0 0 0 chr3LHet 588568 588588 -1966903 + (G)n Simple_repeat Simple_repeat 1 20 0 4 589 15060 26 37 7 chr3LHet 588588 590721 -1964770 - FW_DM LINE Jockey -2490 2202 5 4 589 4728 58 69 8 chr3LHet 590727 591672 -1963819 - DOC3_DM LINE Jockey -2969 1771 770 4 589 662 128 250 0 chr3LHet 591709 591865 -1963626 + DNAREP1_DM LINE Penelope 138 332 -262 4 589 1334 112 137 65 chr3LHet 592240 592547 -1962944 - DNAREP1_DM LINE Penelope -264 330 2 4 589 25 31 0 0 chr3LHet 592842 592874 -1962617 + AT_rich Low_complexity Low_complexity 1 32 0 4 589 23 33 0 0 chr3LHet 593214 593244 -1962247 + AT_rich Low_complexity Low_complexity 1 30 0 4 589 180 0 114 0 chr3LHet 594157 594192 -1961299 + (TTATA)n Simple_repeat Simple_repeat 1 39 0 4 589 29 60 0 0 chr3LHet 594507 594557 -1960934 + AT_rich Low_complexity Low_complexity 1 50 0 4 589 28 0 0 0 chr3LHet 594569 594597 -1960894 + AT_rich Low_complexity Low_complexity 1 28 0 4 589 21 71 0 0 chr3LHet 594651 594693 -1960798 + AT_rich Low_complexity Low_complexity 1 42 0 4 589 1421 95 133 0 chr3LHet 599059 599463 -1956028 - DNAREP1_DM LINE Penelope 0 594 1 4 589 35 54 0 0 chr3LHet 600436 600492 -1954999 + AT_rich Low_complexity Low_complexity 1 56 0 4 589 1631 108 104 7 chr3LHet 601915 602214 -1953277 - DOC LINE Jockey -199 4526 4199 4 589 2078 178 94 1 chr3LHet 602224 602817 -1952674 - DOC LINE Jockey -967 3773 3071 4 589 614 108 0 0 chr3LHet 602862 602955 -1952536 - DOC LINE Jockey -1976 2749 2657 4 589 281 26 0 0 chr3LHet 602959 602997 -1952494 - DOC LINE Jockey -2254 2471 2434 4 589 2937 98 221 0 chr3LHet 602996 603556 -1951935 - DOC LINE Jockey -2472 2253 1570 4 589 294 0 0 0 chr3LHet 603566 603601 -1951890 - DOC LINE Jockey -3322 1403 1369 4 589 1791 123 147 27 chr3LHet 603598 603966 -1951525 - DOC LINE Jockey -4063 662 251 4 589 244 367 29 18 chr3LHet 603958 604230 -1951261 + DIVER2_I LTR Pao 1482 1756 -2391 4 589 460 58 0 68 chr3LHet 604358 604432 -1951059 + DMCR1A LINE CR1 4402 4470 0 4 589 670 186 115 26 chr3LHet 604512 604854 -1950637 - DNAREP1_DM LINE Penelope -262 332 88 4 589 227 274 0 0 chr3LHet 605145 605196 -1950295 + NINJA_I LTR Pao 2991 3041 -2970 4 589 2060 92 67 12 chr3LHet 606832 607173 -1948318 - TC1-2_DM DNA Tc1 -409 1235 876 4 589 287 120 40 0 chr3LHet 607178 607228 -1948263 + FB4_DM DNA Tc1 27 78 -4011 4 589 474 182 27 27 chr3LHet 607455 607602 -1947889 - Gypsy11_I LTR Gypsy -266 3258 3112 4 589 1431 197 135 12 chr3LHet 607612 608131 -1947360 - Gypsy11_I LTR Gypsy -523 3001 2579 4 589 261 138 35 0 chr3LHet 608143 608201 -1947290 - TABOR_I LTR Gypsy -1623 4713 4654 4 589 1177 226 66 0 chr3LHet 608249 608567 -1946924 - Gypsy11_I LTR Gypsy -1733 5164 4826 4 589 2442 290 70 17 chr3LHet 608913 610160 -1945331 + Gypsy4_I LTR Gypsy 1864 3191 -2087 4 589 987 313 48 36 chr3LHet 610154 610942 -1944549 + Gypsy4_I LTR Gypsy 3751 4744 -1544 4 589 497 327 38 6 chr3LHet 611127 611544 -1943947 + Gypsy4_I LTR Gypsy 5098 5394 -894 4 589 478 171 9 0 chr3LHet 611639 611744 -1943747 + DNAREP1_DM LINE Penelope 489 594 0 4 589 628 69 58 19 chr3LHet 611924 612027 -1943464 + HMSBEAGLE_I LTR Gypsy 40 146 -6383 4 589 3553 149 26 0 chr3LHet 612046 612628 -1942863 + HMSBEAGLE_I LTR Gypsy 1910 2506 -4023 4 589 9179 169 47 47 chr3LHet 612685 614464 -1941027 + HMSBEAGLE_I LTR Gypsy 2679 4458 -2071 4 589 4805 136 44 0 chr3LHet 614468 615211 -1940280 + HMSBEAGLE_I LTR Gypsy 4758 5533 -996 4 589 47325 8 5 0 chr3LHet 615225 620502 -1934989 - R1_DM LINE R1 -55 5301 1 4 589 227 0 0 0 chr3LHet 620502 620527 -1934964 - LSU-rRNA_Dme rRNA rRNA -1268 2632 2608 4 589 1096 135 54 0 chr3LHet 620526 620711 -1934780 + HMSBEAGLE_I LTR Gypsy 5522 5716 -813 4 589 289 146 11 68 chr3LHet 620714 620802 -1934689 + HMSBEAGLE_I LTR Gypsy 6180 6262 -267 4 589 394 99 141 0 chr3LHet 620801 620872 -1934619 + HMSBEAGLE_I LTR Gypsy 5636 5716 -813 4 589 648 140 5 105 chr3LHet 620875 621066 -1934425 + HMSBEAGLE_I LTR Gypsy 6180 6351 -178 4 589 3176 40 5 3 chr3LHet 621125 621503 -1933988 + STALKER4_LTR LTR Gypsy 1 379 -23 4 589 28 48 0 0 chr3LHet 621641 621683 -1933808 + AT_rich Low_complexity Low_complexity 1 42 0 4 589 36410 75 32 16 chr3LHet 621690 628163 -1927328 + STALKER4_I LTR Gypsy 291 6530 0 4 589 3280 29 5 0 chr3LHet 628163 628540 -1926951 + STALKER4_LTR LTR Gypsy 1 379 -23 4 589 487 366 16 25 chr3LHet 628857 629174 -1926317 + DIVER2_I LTR Pao 2029 2342 -1805 4 589 7795 62 17 0 chr3LHet 629176 630164 -1925327 + BS2 LINE Jockey 3717 4721 0 4 589 265 230 136 11 chr3LHet 630182 630270 -1925221 + DIVER2_I LTR Pao 2333 2431 -1716 4 589 344 357 44 16 chr3LHet 631378 631694 -1923797 + DIVER2_I LTR Pao 2596 2920 -1227 4 589 416 299 156 29 chr3LHet 631871 632109 -1923382 + DIVER2_I LTR Pao 3323 3590 -557 4 589 299 286 9 19 chr3LHet 632237 632344 -1923147 + DIVER2_I LTR Pao 3847 3952 -195 4 589 36 0 0 0 chr3LHet 632679 632715 -1922776 + AT_rich Low_complexity Low_complexity 1 36 0 4 589 183 42 0 0 chr3LHet 633592 633616 -1921875 + (TTATA)n Simple_repeat Simple_repeat 4 27 0 4 589 3188 327 69 42 chr3LHet 634624 637006 -1918485 - Gypsy12_I LTR Gypsy -178 5368 2923 4 589 22 35 0 0 chr3LHet 637638 637667 -1917824 + AT_rich Low_complexity Low_complexity 1 29 0 4 589 741 141 0 16 chr3LHet 638488 638611 -1916880 + DNAREP1_DM LINE Penelope 1 121 -473 4 589 1408 182 58 96 chr3LHet 638650 639027 -1916464 - DM176_LTR LTR Gypsy -14 493 131 4 589 1832 146 18 79 chr3LHet 639405 639748 -1915743 - DMRT1A LINE R1 -71 5112 4791 4 589 676 145 8 31 chr3LHet 639750 639878 -1915613 + STALKER4_I LTR Gypsy 604 728 -5802 4 589 1279 52 93 0 chr3LHet 639859 640031 -1915460 + Baggins1 LINE LOA 196 383 -5070 4 589 3759 40 0 0 chr3LHet 640030 640476 -1915015 + Baggins1 LINE LOA 722 1167 -4286 4 589 3295 47 64 1 chr3LHet 640484 641145 -1914346 + Baggins1 LINE LOA 2399 3130 -2323 4 589 638 95 0 0 chr3LHet 641144 641228 -1914263 + STALKER4_I LTR Gypsy 2003 2086 -4444 4 589 33521 57 36 9 chr3LHet 641235 645738 -1909753 + FW_DM LINE Jockey 1 4793 0 4 589 2194 110 9 0 chr3LHet 645738 646055 -1909436 + STALKER4_I LTR Gypsy 2074 2393 -4137 4 589 7933 98 93 6 chr3LHet 646055 647370 -1908121 + STALKER4_I LTR Gypsy 4763 6216 -380 4 589 23 92 0 0 chr3LHet 647370 647435 -1908056 + AT_rich Low_complexity Low_complexity 1 65 0 4 589 307 274 27 0 chr3LHet 647517 647590 -1907901 + (CGG)n Simple_repeat Simple_repeat 3 77 0 4 589 1719 116 99 0 chr3LHet 648771 649063 -1906428 + MAX_LTR LTR Pao 1 321 0 4 589 2245 31 3 94 chr3LHet 649063 649383 -1906108 + MAX_I LTR Pao 1 291 -7623 4 589 189 0 0 0 chr3LHet 649781 649802 -1905689 + (A)n Simple_repeat Simple_repeat 1 21 0 4 589 252 322 0 0 chr3LHet 652244 652334 -1903157 + BLASTOPIA_I LTR Gypsy 2646 2735 -1746 4 589 296 358 44 0 chr3LHet 652657 652861 -1902630 + Invader3_I LTR Gypsy 3981 4193 -695 4 589 613 147 167 69 chr3LHet 653612 653742 -1901749 + MAX_I LTR Pao 282 434 -7480 4 589 4995 7 35 0 chr3LHet 653742 654316 -1901175 + IDEFIX_LTR LTR Gypsy 1 594 0 4 589 25 0 0 0 chr3LHet 654505 654530 -1900961 + AT_rich Low_complexity Low_complexity 1 25 0 4 73 49735 9 0 1 chr3LHet 654911 660546 -1894945 + IDEFIX_I LTR Gypsy 1 5628 0 4 590 5270 8 3 0 chr3LHet 660546 661138 -1894353 + IDEFIX_LTR LTR Gypsy 1 594 0 4 590 252 183 9 80 chr3LHet 661138 661251 -1894240 + MAX_I LTR Pao 463 567 -7347 4 590 3214 6 0 0 chr3LHet 661257 661603 -1893888 + Invader4_LTR LTR Gypsy 1 346 0 4 590 19917 59 54 76 chr3LHet 661834 664903 -1890588 + MAX_I LTR Pao 557 3560 -4354 4 590 12355 30 4 22 chr3LHet 664901 666424 -1889067 + MAX_I LTR Pao 6418 7912 -2 4 590 1396 45 0 6 chr3LHet 666429 666602 -1888889 + MAX_LTR LTR Pao 1 172 -149 4 590 2468 0 0 0 chr3LHet 666602 666878 -1888613 + Copia_LTR LTR Copia 1 276 0 4 590 39264 1 0 0 chr3LHet 666878 671472 -1884019 + Copia_I LTR Copia 1 4593 0 4 590 2297 0 0 0 chr3LHet 671472 671748 -1883743 + Copia_LTR LTR Copia 1 276 0 4 590 21 0 0 0 chr3LHet 672013 672034 -1883457 + AT_rich Low_complexity Low_complexity 1 21 0 4 590 29 0 0 0 chr3LHet 672485 672514 -1882977 + AT_rich Low_complexity Low_complexity 1 29 0 4 590 1516 292 92 12 chr3LHet 672516 673504 -1881987 - HMSBEAGLE_I LTR Gypsy -757 5772 4707 4 590 3389 299 43 4 chr3LHet 673577 674939 -1880552 - HMSBEAGLE_I LTR Gypsy -1935 4594 3179 4 590 506 307 35 41 chr3LHet 675146 675462 -1880029 - HMSBEAGLE_I LTR Gypsy -3601 2928 2615 4 590 8402 37 14 0 chr3LHet 675602 676692 -1878799 + PROTOP_A DNA P 1 1105 0 4 590 549 340 4 4 chr3LHet 676839 677119 -1878372 - HMSBEAGLE_I LTR Gypsy -4741 1788 1509 4 590 2023 43 0 0 chr3LHet 677798 678056 -1877435 - DMCR1A LINE CR1 -10 4460 4203 4 590 1367 42 12 32 chr3LHet 678068 678280 -1877211 - BATUMI_LTR LTR Pao -57 215 35 4 590 4770 65 0 5 chr3LHet 678280 678944 -1876547 - BATUMI_I LTR Pao 0 7963 7303 4 590 2347 43 9 9 chr3LHet 678967 679292 -1876199 + BATUMI_I LTR Pao 6427 6751 -1212 4 590 24814 38 12 46 chr3LHet 679285 682880 -1872611 - BATUMI_I LTR Pao -4489 3474 1 4 590 1708 46 4 40 chr3LHet 682880 683130 -1872361 - BATUMI_LTR LTR Pao 0 272 32 4 590 15499 30 10 1 chr3LHet 683151 685071 -1870420 - DMCR1A LINE CR1 -262 4208 2270 4 590 279 172 154 81 chr3LHet 685261 685507 -1869984 + STALKER4_I LTR Gypsy 6217 6480 -50 4 590 493 114 0 136 chr3LHet 685540 685672 -1869819 + STALKER4_LTR LTR Gypsy 1 114 -288 4 590 712 89 55 39 chr3LHet 685687 685815 -1869676 + STALKER4_LTR LTR Gypsy 233 362 -40 4 590 1624 290 48 7 chr3LHet 686397 687297 -1868194 - QUASIMODO_I LTR Gypsy 0 6060 5124 4 590 434 225 113 0 chr3LHet 688817 688968 -1866523 - TV1I LTR Gypsy -1072 4891 4724 4 590 4513 262 65 16 chr3LHet 689072 690933 -1864558 - TV1I LTR Gypsy -1471 4492 2541 4 590 876 261 4 4 chr3LHet 690932 691204 -1864287 - TV1I LTR Gypsy -3824 1804 1543 4 590 561 290 87 24 chr3LHet 691218 691713 -1863778 - QUASIMODO_I LTR Gypsy -4331 1729 1204 4 590 27 29 0 0 chr3LHet 692494 692528 -1862963 + AT_rich Low_complexity Low_complexity 1 34 0 4 590 541 307 42 27 chr3LHet 693076 693247 -1862244 + Gypsy4_I LTR Gypsy 2480 2768 -3520 4 590 1006 119 33 0 chr3LHet 693247 693457 -1862034 + TLD2 Unknown Unknown 2 218 0 4 590 5003 40 3 2 chr3LHet 694293 694927 -1860564 - DMCR1A LINE CR1 -3361 1109 475 4 590 598 53 97 0 chr3LHet 694936 695049 -1860442 - PROTOP_B DNA P -479 674 551 4 590 54 16 0 0 chr3LHet 695845 695906 -1859585 + AT_rich Low_complexity Low_complexity 1 61 0 4 590 2492 69 60 0 chr3LHet 700332 700696 -1854795 - ROOA_LTR LTR Pao 0 386 1 4 590 467 157 9 0 chr3LHet 701306 701414 -1854077 + TART LINE telomeric 2973 3081 -11396 4 590 619 234 15 81 chr3LHet 701442 701725 -1853766 + TART LINE telomeric 7806 8046 -2608 4 590 849 183 12 52 chr3LHet 701705 701999 -1853492 + TART LINE telomeric 5700 5874 -8603 4 590 2096 184 142 62 chr3LHet 702004 702871 -1852620 + TART LINE telomeric 12546 13481 -996 4 590 847 193 184 49 chr3LHet 702886 703311 -1852180 + TART LINE telomeric 13992 14473 -4 4 590 1396 139 71 47 chr3LHet 703299 703639 -1851852 + TAHRE LINE telomeric 284 631 -9832 4 590 743 340 66 28 chr3LHet 703957 704659 -1850832 + MICROPIA_I LTR Gypsy 1 710 -3389 4 590 2492 69 60 0 chr3LHet 707393 707757 -1847734 - ROOA_LTR LTR Pao 0 386 1 4 590 467 157 9 0 chr3LHet 708367 708475 -1847016 + TART LINE telomeric 2973 3081 -11396 4 590 619 234 15 81 chr3LHet 708503 708786 -1846705 + TART LINE telomeric 7806 8046 -2608 4 590 849 185 23 52 chr3LHet 708766 709078 -1846413 + TART LINE telomeric 5700 5874 -8603 4 590 2633 187 142 62 chr3LHet 709065 709932 -1845559 + TART LINE telomeric 12546 13481 -996 4 590 847 193 184 49 chr3LHet 709947 710372 -1845119 + TART LINE telomeric 13992 14473 -4 4 590 1396 139 71 47 chr3LHet 710360 710700 -1844791 + TAHRE LINE telomeric 284 631 -9832 4 590 231 276 12 132 chr3LHet 710745 710912 -1844579 + ACCORD2_I LTR Gypsy 526 672 -6540 4 590 6359 321 40 32 chr3LHet 711019 714862 -1840629 + MICROPIA_I LTR Gypsy 1 3850 -626 4 590 2283 193 89 29 chr3LHet 715428 716024 -1839467 + TAHRE LINE telomeric 778 1409 -9054 4 590 32 43 0 0 chr3LHet 716093 716139 -1839352 + AT_rich Low_complexity Low_complexity 1 46 0 4 590 29 28 0 0 chr3LHet 717263 717299 -1838192 + AT_rich Low_complexity Low_complexity 1 36 0 4 590 1014 129 0 6 chr3LHet 717408 717580 -1837911 + Gypsy12_I LTR Gypsy 1353 1523 -4023 4 590 7445 177 103 80 chr3LHet 717577 720203 -1835288 + Gypsy8_I LTR Gypsy 300 2984 -1363 4 590 3264 194 74 5 chr3LHet 720361 721101 -1834390 + Gypsy12_I LTR Gypsy 1644 2434 -3112 4 590 5951 169 111 11 chr3LHet 721101 722328 -1833163 + Gypsy12_I LTR Gypsy 4197 5546 0 4 590 30 0 0 0 chr3LHet 722382 722412 -1833079 + AT_rich Low_complexity Low_complexity 1 30 0 4 590 29 47 0 0 chr3LHet 722720 722763 -1832728 + AT_rich Low_complexity Low_complexity 1 43 0 4 590 1335 57 268 5 chr3LHet 723441 723831 -1831660 - DM297_I LTR Gypsy -1784 4383 3892 4 590 5393 115 38 63 chr3LHet 723847 724955 -1830536 + Gypsy12A_LTR LTR Gypsy 1 1080 -1200 4 590 4164 81 58 43 chr3LHet 725015 725752 -1829739 + Gypsy12A_LTR LTR Gypsy 1523 2270 -10 4 590 3421 119 145 9 chr3LHet 725760 726515 -1828976 - DM297_I LTR Gypsy -2542 3625 2768 4 590 1471 183 10 0 chr3LHet 726511 726823 -1828668 - DM297_I LTR Gypsy -3930 2237 1923 4 590 911 166 11 16 chr3LHet 726823 727013 -1828478 - Invader2_LTR LTR Gypsy 0 266 78 4 590 1260 168 46 0 chr3LHet 727035 727297 -1828194 - DM297_I LTR Gypsy -4347 1820 1547 4 590 712 152 0 7 chr3LHet 727323 727469 -1828022 - DM297_I LTR Gypsy -5111 1056 912 4 590 1758 145 38 14 chr3LHet 727462 728075 -1827416 - DM297_I LTR Gypsy -5459 708 1 4 590 1838 134 63 61 chr3LHet 728076 728488 -1827003 - DM297_LTR LTR Gypsy -1 413 1 4 590 1683 115 77 29 chr3LHet 728496 728846 -1826645 - ROVER-LTR_DM LTR Gypsy 0 367 1 4 590 250 138 653 0 chr3LHet 728849 728962 -1826529 + DNAREP1_DM LINE Penelope 17 201 -393 4 590 37 62 0 0 chr3LHet 729188 729253 -1826238 + AT_rich Low_complexity Low_complexity 1 65 0 4 590 301 122 35 46 chr3LHet 729462 729550 -1825941 + DNAREP1_DM LINE Penelope 224 301 -293 4 590 2822 103 121 2 chr3LHet 729582 730087 -1825404 + DNAREP1_DM LINE Penelope 1 565 -29 4 590 1443 147 110 3 chr3LHet 730126 730454 -1825037 - DM297_I LTR Gypsy -4640 1527 1165 4 590 1920 123 3 50 chr3LHet 730464 730823 -1824668 - DM297_I LTR Gypsy -5482 685 344 4 590 192 60 106 24 chr3LHet 731109 731194 -1824297 + (TATAA)n Simple_repeat Simple_repeat 2 93 0 4 590 1714 62 17 31 chr3LHet 731197 731482 -1824009 - BATUMI_LTR LTR Pao 0 272 32 4 590 30987 117 13 31 chr3LHet 731540 739466 -1816025 - BATUMI_I LTR Pao -78 7836 1 4 590 1704 58 0 28 chr3LHet 739466 739714 -1815777 - BATUMI_LTR LTR Pao 0 272 32 4 590 42 36 0 0 chr3LHet 739735 739791 -1815700 + AT_rich Low_complexity Low_complexity 1 56 0 4 590 57 39 0 0 chr3LHet 740048 740126 -1815365 + AT_rich Low_complexity Low_complexity 1 78 0 4 590 29 0 0 0 chr3LHet 740919 740948 -1814543 + AT_rich Low_complexity Low_complexity 1 29 0 4 590 723 129 55 12 chr3LHet 740974 741147 -1814344 - DNAREP1_DM LINE Penelope -262 332 89 4 590 563 83 320 0 chr3LHet 741135 741260 -1814231 - DNAREP1_DM LINE Penelope -429 165 1 4 590 22 0 0 0 chr3LHet 741398 741420 -1814071 + AT_rich Low_complexity Low_complexity 1 22 0 4 590 264 136 0 0 chr3LHet 741962 742006 -1813485 + Copia_I LTR Copia 3169 3212 -1381 4 590 1557 102 36 40 chr3LHet 742023 742299 -1813192 + BURDOCK_LTR LTR Gypsy 1 275 0 4 590 35089 61 27 19 chr3LHet 742299 747917 -1807574 + BURDOCK_I LTR Gypsy 1 5860 0 4 590 1623 98 32 40 chr3LHet 747918 748195 -1807296 + BURDOCK_LTR LTR Gypsy 1 275 0 4 590 461 197 164 0 chr3LHet 748210 748332 -1807159 + Copia_I LTR Copia 3229 3370 -1223 4 590 318 253 0 0 chr3LHet 748701 748796 -1806695 + Copia_I LTR Copia 3377 3471 -1122 4 590 465 336 40 0 chr3LHet 749222 749472 -1806019 - Gypsy12_I LTR Gypsy -2139 3407 3148 4 590 12469 45 22 1 chr3LHet 749969 751584 -1803907 + DMCR1A LINE CR1 837 2485 -1985 4 590 14082 30 60 4 chr3LHet 751601 753432 -1802059 + DMCR1A LINE CR1 2537 4470 0 4 590 341 247 40 35 chr3LHet 753732 753913 -1801578 + Gypsy3_LTR LTR Gypsy 21 201 -206 4 590 25 0 0 0 chr3LHet 754276 754301 -1801190 + AT_rich Low_complexity Low_complexity 1 25 0 4 590 2391 232 149 34 chr3LHet 754408 756029 -1799462 + Gypsy3_I LTR Gypsy 330 2137 -4040 4 590 28 79 0 0 chr3LHet 756460 756523 -1798968 + AT_rich Low_complexity Low_complexity 1 63 0 4 590 254 119 0 0 chr3LHet 756766 756808 -1798683 - PROTOP_B DNA P 0 1153 1112 4 590 1953 17 0 0 chr3LHet 756791 757022 -1798469 - PROTOP_B DNA P -922 231 1 4 590 24 53 0 0 chr3LHet 757047 757085 -1798406 + AT_rich Low_complexity Low_complexity 1 38 0 4 590 1839 87 89 18 chr3LHet 757291 757618 -1797873 + DNAREP1_DM LINE Penelope 50 399 -195 4 590 12774 86 30 3 chr3LHet 758080 760015 -1795476 + STALKER4_I LTR Gypsy 4155 6142 -388 4 590 4345 27 26 19 chr3LHet 760015 760583 -1794908 + PROTOP_A DNA P 1 572 -533 4 590 517 62 42 0 chr3LHet 760580 760676 -1794815 + PROTOP DNA P 648 747 -3733 4 590 2216 23 0 0 chr3LHet 760691 760957 -1794534 - Invader2_LTR LTR Gypsy 0 266 1 4 590 3907 34 0 2 chr3LHet 760957 761456 -1794035 + PROTOP_A DNA P 608 1105 0 4 590 1046 115 93 93 chr3LHet 761456 761800 -1793691 + STALKER4_I LTR Gypsy 6132 6475 -55 4 590 10627 36 5 5 chr3LHet 761840 763183 -1792308 - G5A_DM LINE Jockey -3 2838 1496 4 590 1025 184 20 53 chr3LHet 763183 763482 -1792009 + Gypsy5_LTR LTR Gypsy 1 289 -141 4 590 24 32 0 0 chr3LHet 763515 763546 -1791945 + AT_rich Low_complexity Low_complexity 1 31 0 4 590 336 77 19 37 chr3LHet 763624 763678 -1791813 + Gypsy5_I LTR Gypsy 1 53 -6456 4 590 1091 181 80 10 chr3LHet 764712 765014 -1790477 + Gypsy5_I LTR Gypsy 99 421 -6088 4 590 22338 158 16 3 chr3LHet 765007 769082 -1786409 + Gypsy5_I LTR Gypsy 2371 6499 -10 4 590 9113 124 46 9 chr3LHet 769080 770921 -1784570 - G5A_DM LINE Jockey -1987 2869 1 4 590 845 234 5 5 chr3LHet 770921 771123 -1784368 - G5A_DM LINE Jockey -3536 1320 1119 4 590 788 311 43 14 chr3LHet 771293 771711 -1783780 - G5A_DM LINE Jockey -4019 837 408 4 590 1184 81 6 0 chr3LHet 771815 771989 -1783502 + STALKER4_LTR LTR Gypsy 1 175 -227 4 590 14913 155 6 9 chr3LHet 772587 777029 -1778462 - G6_DM LINE Jockey 0 4346 3 4 590 6261 314 48 46 chr3LHet 778563 782476 -1773015 - HMSBEAGLE_I LTR Gypsy -757 5772 1852 4 590 21 0 0 0 chr3LHet 783065 783086 -1772405 + AT_rich Low_complexity Low_complexity 1 21 0 4 590 468 220 70 85 chr3LHet 783153 783352 -1772139 - HMSBEAGLE_I LTR Gypsy -6110 419 224 4 590 3051 205 4 26 chr3LHet 783882 784582 -1770909 + DM297_I LTR Gypsy 651 1335 -4832 4 590 637 153 0 8 chr3LHet 784581 784700 -1770791 + DM297_I LTR Gypsy 1703 1820 -4347 4 590 534 114 0 175 chr3LHet 784740 784900 -1770591 + DM297_I LTR Gypsy 2057 2188 -3979 4 590 2614 26 0 0 chr3LHet 784900 785206 -1770285 - DM1731_LTR LTR Copia 0 336 31 4 590 1913 5 0 22 chr3LHet 785208 785433 -1770058 - DM1731_I LTR Copia 0 3976 3757 4 590 3603 17 0 0 chr3LHet 785427 785835 -1769656 - DM1731_I LTR Copia -1206 2770 2363 4 590 796 86 0 0 chr3LHet 785826 785931 -1769560 - DM1731_I LTR Copia -2195 1781 1677 4 73 6142 12 0 0 chr3LHet 785929 786621 -1768870 - DM1731_I LTR Copia -3284 692 1 4 591 2749 16 0 0 chr3LHet 786621 786933 -1768558 - DM1731_LTR LTR Copia 0 336 25 4 591 640 108 59 0 chr3LHet 786928 787030 -1768461 + DM297_I LTR Gypsy 2183 2290 -3877 4 591 763 87 9 0 chr3LHet 787031 787146 -1768345 + BS3_DM LINE Jockey 1617 1732 -58 4 591 2273 154 159 6 chr3LHet 787168 787652 -1767839 + DM297_I LTR Gypsy 2308 2865 -3302 4 591 446 266 0 0 chr3LHet 787656 787769 -1767722 + DM297_I LTR Gypsy 3055 3167 -3000 4 591 1291 137 14 0 chr3LHet 787783 787995 -1767496 + DM297_I LTR Gypsy 3256 3470 -2697 4 591 651 339 51 48 chr3LHet 787987 788916 -1766575 + MICROPIA_I LTR Gypsy 2346 3276 -1200 4 591 434 149 118 10 chr3LHet 790008 790110 -1765381 + DNAREP1_DM LINE Penelope 220 332 -262 4 591 238 189 0 54 chr3LHet 790129 790185 -1765306 - DNAREP1_DM LINE Penelope -154 440 388 4 591 247 112 268 87 chr3LHet 790164 790291 -1765200 - DNAREP1_DM LINE Penelope -21 573 424 4 591 3236 52 76 3 chr3LHet 790331 791186 -1764305 + PROTOP_B DNA P 1 917 -236 4 591 625 73 0 0 chr3LHet 791183 791265 -1764226 + PROTOP_B DNA P 1072 1153 0 4 591 397 316 170 15 chr3LHet 791340 791681 -1763810 + HMSBEAGLE_I LTR Gypsy 3890 4283 -2246 4 591 472 238 40 20 chr3LHet 791698 791848 -1763643 + HMSBEAGLE_I LTR Gypsy 4343 4495 -2034 4 591 22 56 0 0 chr3LHet 791887 791923 -1763568 + AT_rich Low_complexity Low_complexity 1 36 0 4 591 2141 26 0 11 chr3LHet 791949 792225 -1763266 + DMCR1A LINE CR1 1 273 -4197 4 591 16543 36 38 1 chr3LHet 792235 794266 -1761225 + DMCR1A LINE CR1 381 2485 -1985 4 591 6844 27 9 0 chr3LHet 794283 795093 -1760398 + DMCR1A LINE CR1 2537 3353 -1117 4 591 281 197 0 62 chr3LHet 795071 795136 -1760355 - DMCR1A LINE CR1 -1457 3013 2953 4 591 1210 141 60 18 chr3LHet 795134 795351 -1760140 - DMCR1A LINE CR1 -1909 2561 2336 4 591 976 136 268 24 chr3LHet 795353 795669 -1759822 - DNAREP1_DM LINE Penelope -288 306 2 4 591 337 80 120 0 chr3LHet 795757 795807 -1759684 - DNAREP1_DM LINE Penelope -537 57 2 4 591 22 35 0 0 chr3LHet 795859 795888 -1759603 + AT_rich Low_complexity Low_complexity 1 29 0 4 591 4110 70 44 0 chr3LHet 795954 796524 -1758967 + DOC3_DM LINE Jockey 136 730 -4010 4 591 1246 28 0 0 chr3LHet 796542 796687 -1758804 + DOC3_DM LINE Jockey 956 1100 -3640 4 591 508 91 0 0 chr3LHet 796691 796768 -1758723 + DOC3_DM LINE Jockey 1324 1400 -3340 4 591 2150 146 61 54 chr3LHet 796775 797367 -1758124 + STALKER4_I LTR Gypsy 2179 2898 -3632 4 591 634 71 0 0 chr3LHet 797360 797445 -1758046 + STALKER4_I LTR Gypsy 3091 3175 -3355 4 591 3351 98 33 2 chr3LHet 797441 797962 -1757529 + Stalker2_I LTR Gypsy 3515 4051 -3351 4 591 39543 16 21 1 chr3LHet 797977 802577 -1752914 + FW_DM LINE Jockey 1 4691 -1 4 591 9660 71 80 7 chr3LHet 802576 804717 -1750774 + STALKER4_I LTR Gypsy 2832 5990 -540 4 591 548 132 12 85 chr3LHet 804719 804884 -1750607 + STALKER4_I LTR Gypsy 3372 3524 0 4 591 2406 85 161 8 chr3LHet 804884 805276 -1750215 + Gypsy11_LTR LTR Gypsy 1 452 0 4 591 11133 30 26 1 chr3LHet 805276 806619 -1748872 + DOC3_DM LINE Jockey 2205 3581 -1159 4 591 2802 26 12 0 chr3LHet 806624 806965 -1748526 + DOC3_DM LINE Jockey 4394 4738 -2 4 591 674 281 50 25 chr3LHet 806969 807210 -1748281 - DIVER2_I LTR Pao -497 3650 3404 4 591 49 0 0 0 chr3LHet 807246 807295 -1748196 + AT_rich Low_complexity Low_complexity 1 49 0 4 591 824 87 87 0 chr3LHet 808911 809038 -1746453 - Baggins1 LINE LOA -83 5370 5233 4 591 35 0 0 0 chr3LHet 809679 809714 -1745777 + AT_rich Low_complexity Low_complexity 1 35 0 4 591 1180 122 19 0 chr3LHet 809744 809957 -1745534 - TLD2 Unknown Unknown 0 218 2 4 591 528 306 37 37 chr3LHet 809798 810097 -1745394 - Gypsy4_I LTR Gypsy -3510 2778 2480 4 591 1219 281 83 7 chr3LHet 810213 810672 -1744819 - FROGGER_I LTR Copia -957 1120 627 4 591 1111 199 25 14 chr3LHet 811818 812093 -1743398 + DNAREP1_DM LINE Penelope 1 278 -316 4 591 777 173 123 20 chr3LHet 812097 812292 -1743199 + DNAREP1_DM LINE Penelope 203 417 -177 4 591 32834 17 9 1 chr3LHet 812362 816173 -1739318 - FW_DM LINE Jockey -2 4690 848 4 591 2973 34 31 0 chr3LHet 816172 816530 -1738961 - FW_DM LINE Jockey -4323 369 1 4 591 458 219 70 9 chr3LHet 816808 816923 -1738568 - DIVER2_I LTR Pao -5 4142 4021 4 591 361 0 0 39 chr3LHet 817152 817203 -1738288 + (TA)n Simple_repeat Simple_repeat 1 49 0 4 591 25 31 0 0 chr3LHet 819181 819213 -1736278 + AT_rich Low_complexity Low_complexity 1 32 0 4 591 1173 314 4 9 chr3LHet 819280 819737 -1735754 - Gypsy4_I LTR Gypsy -5157 1131 677 4 591 924 273 18 39 chr3LHet 820936 821363 -1734128 - TV1I LTR Gypsy -1940 4227 3649 4 591 644 283 96 40 chr3LHet 821480 821959 -1733532 - TV1I LTR Gypsy -2595 3368 2863 4 591 449 258 3 35 chr3LHet 822002 822146 -1733345 - TV1I LTR Gypsy -3659 2304 2177 4 591 264 313 51 34 chr3LHet 822151 822408 -1733083 - QUASIMODO_I LTR Gypsy -3973 2087 1905 4 591 1951 57 172 16 chr3LHet 823107 823528 -1731963 + PROTOP_B DNA P 183 669 -484 4 591 17273 38 23 1 chr3LHet 823537 825639 -1729852 + DMCR1A LINE CR1 474 2620 -1850 4 591 31 26 0 0 chr3LHet 825890 825928 -1729563 + AT_rich Low_complexity Low_complexity 1 38 0 4 591 1683 79 122 15 chr3LHet 825998 826268 -1729223 - DNAREP1_DM LINE Penelope 0 594 296 4 591 656 113 203 14 chr3LHet 826442 826585 -1728906 + DNAREP1_DM LINE Penelope 185 354 -240 4 591 568 334 77 7 chr3LHet 826586 826884 -1728607 - DM1731_I LTR Copia -2131 1845 1527 4 591 329 311 10 0 chr3LHet 827185 827288 -1728203 - DM1731_I LTR Copia -3026 950 847 4 591 34 24 0 0 chr3LHet 827323 827364 -1728127 + AT_rich Low_complexity Low_complexity 1 41 0 4 591 320 263 50 50 chr3LHet 827513 827613 -1727878 - DM1731_I LTR Copia -3388 588 489 4 591 4164 56 66 26 chr3LHet 827708 828316 -1727175 - DOC5_DM LINE Jockey -875 3807 3176 4 591 32 43 0 0 chr3LHet 829774 829820 -1725671 + AT_rich Low_complexity Low_complexity 1 46 0 4 591 390 368 0 0 chr3LHet 831533 831699 -1723792 - HMSBEAGLE_I LTR Gypsy -2989 3540 3375 4 591 373 215 21 0 chr3LHet 831718 831811 -1723680 - HMSBEAGLE_I LTR Gypsy -3205 3324 3230 4 591 13781 48 100 1 chr3LHet 832290 835401 -1720090 + Baggins1 LINE LOA 1 3536 -1917 4 591 6523 51 116 6 chr3LHet 835398 836278 -1719213 + Baggins1 LINE LOA 4158 5134 -319 4 591 410 279 253 9 chr3LHet 836326 836556 -1718935 - HMSBEAGLE_I LTR Gypsy -4576 1953 1668 4 591 2352 132 104 49 chr3LHet 836614 837355 -1718136 - DNAREP1_DM LINE Penelope -31 563 1 4 591 300 298 16 16 chr3LHet 838443 838569 -1716922 - Ulysses_I LTR Gypsy -1747 4634 4509 4 591 18006 36 20 4 chr3LHet 841286 843421 -1712070 + DMCR1A LINE CR1 728 2896 -1574 4 591 2548 73 142 5 chr3LHet 843427 844055 -1711436 + DMCR1A LINE CR1 3495 4208 -262 4 591 1494 96 4 62 chr3LHet 844076 844332 -1711159 + BATUMI_LTR LTR Pao 32 272 0 4 591 5482 58 81 94 chr3LHet 844334 845390 -1710101 + BATUMI_I LTR Pao 1 1043 -6920 4 591 38531 89 39 42 chr3LHet 845388 851681 -1703810 + BATUMI_I LTR Pao 1365 7836 -78 4 591 1825 68 17 31 chr3LHet 851739 852024 -1703467 + BATUMI_LTR LTR Pao 32 272 0 4 591 192 60 106 24 chr3LHet 852027 852112 -1703379 + (TTATA)n Simple_repeat Simple_repeat 2 93 0 4 591 240 83 0 53 chr3LHet 852120 852158 -1703333 - DNAREP1_DM LINE Penelope -4 590 555 4 591 2114 123 18 49 chr3LHet 852298 852683 -1702808 + DM297_I LTR Gypsy 315 687 -5480 4 591 1559 150 110 3 chr3LHet 852691 853019 -1702472 + DM297_I LTR Gypsy 1165 1527 -4640 4 591 3035 103 121 2 chr3LHet 853058 853563 -1701928 - DNAREP1_DM LINE Penelope -29 565 1 4 591 323 139 11 102 chr3LHet 853595 853683 -1701808 - DNAREP1_DM LINE Penelope -293 301 224 4 591 57 39 0 0 chr3LHet 853887 853965 -1701526 + AT_rich Low_complexity Low_complexity 1 78 0 4 591 3120 0 0 0 chr3LHet 854127 854463 -1701028 + DM1731_LTR LTR Copia 1 336 0 4 591 36930 1 1 1 chr3LHet 854463 858441 -1697050 + DM1731_I LTR Copia 1 3976 0 4 591 2866 39 0 0 chr3LHet 858441 858777 -1696714 + DM1731_LTR LTR Copia 1 336 0 4 591 40 37 0 0 chr3LHet 858840 858894 -1696597 + AT_rich Low_complexity Low_complexity 1 54 0 4 591 1768 39 42 25 chr3LHet 858917 859154 -1696337 + BATUMI_LTR LTR Pao 32 272 0 4 591 6609 45 39 73 chr3LHet 859154 860234 -1695257 + BATUMI_I LTR Pao 1 1043 -6920 4 591 27740 40 45 56 chr3LHet 860232 864023 -1691468 + BATUMI_I LTR Pao 1365 5115 -2848 4 591 6927 43 34 9 chr3LHet 864017 864863 -1690628 + BATUMI_I LTR Pao 5392 6258 -1705 4 591 268 81 0 0 chr3LHet 864862 864899 -1690592 + BATUMI_I LTR Pao 6387 6423 -1540 4 591 4586 44 7 9 chr3LHet 864922 865498 -1689993 - BATUMI_I LTR Pao -962 7001 6427 4 591 1816 90 10 9 chr3LHet 865521 866020 -1689471 + BATUMI_I LTR Pao 7303 7963 0 4 591 1602 75 4 62 chr3LHet 866042 866298 -1689193 + BATUMI_LTR LTR Pao 32 272 0 4 591 2245 34 4 0 chr3LHet 866298 866565 -1688926 + DMCR1A LINE CR1 4203 4470 0 4 591 1145 70 0 0 chr3LHet 866998 867154 -1688337 + FW2_DM LINE Jockey 1 156 -3805 4 591 4391 52 48 0 chr3LHet 867156 867717 -1687774 + FW2_DM LINE Jockey 384 971 -2990 4 591 6633 78 129 53 chr3LHet 867696 868828 -1686663 + FW2_DM LINE Jockey 1328 2545 -1416 4 591 4049 42 4 0 chr3LHet 868837 869316 -1686175 + FW2_DM LINE Jockey 2807 3287 -674 4 591 247 50 175 0 chr3LHet 869326 869366 -1686125 + FW2_DM LINE Jockey 3761 3807 -154 4 591 615 331 30 22 chr3LHet 869441 869808 -1685683 - DIVER2_I LTR Pao -1758 2389 2020 4 591 351 238 46 28 chr3LHet 869838 869946 -1685545 - DIVER2_I LTR Pao -2334 1813 1704 4 591 357 229 46 28 chr3LHet 870277 870385 -1685106 + DIVER2_I LTR Pao 1704 1813 -2334 4 591 569 336 62 14 chr3LHet 870415 870768 -1684723 + DIVER2_I LTR Pao 2020 2389 -1758 4 591 269 302 28 19 chr3LHet 871747 871855 -1683636 + DIVER2_I LTR Pao 2390 2498 -1649 4 591 1499 340 95 15 chr3LHet 872241 873329 -1682162 + DIVER2_I LTR Pao 2867 4041 -106 4 591 29 28 0 0 chr3LHet 874355 874391 -1681100 + AT_rich Low_complexity Low_complexity 1 36 0 4 591 810 202 153 12 chr3LHet 874697 874938 -1680553 - MDG1_I LTR Gypsy -4090 2506 2232 4 591 227 259 56 0 chr3LHet 876705 876759 -1678732 + Gypsy12_I LTR Gypsy 3273 3329 -2217 4 591 638 26 13 0 chr3LHet 877051 877128 -1678363 - TRANSIB2 DNA Transib -2328 516 439 4 591 1708 24 14 0 chr3LHet 877126 877334 -1678157 - TRANSIB2 DNA Transib -2594 250 40 4 591 4039 45 51 2 chr3LHet 877333 877846 -1677645 - DMCR1A LINE CR1 0 4470 3933 4 591 43591 1 0 0 chr3LHet 877844 882568 -1672923 + DOC LINE Jockey 3 4725 0 4 591 1059 40 0 0 chr3LHet 882570 882695 -1672796 - DMCR1A LINE CR1 -523 3947 3823 4 591 14426 28 44 2 chr3LHet 882692 884469 -1671022 - DMCR1A LINE CR1 -2619 1851 1 4 591 309 24 0 67 chr3LHet 884478 884523 -1670968 - TRANSIB2 DNA Transib -2800 44 3 4 591 37 23 0 0 chr3LHet 885859 885903 -1669588 + AT_rich Low_complexity Low_complexity 1 44 0 4 591 318 161 0 0 chr3LHet 885935 885991 -1669500 - MDG1_I LTR Gypsy -4496 2100 2045 4 591 2030 106 127 3 chr3LHet 886059 886390 -1669101 - DNAREP1_DM LINE Penelope -21 573 202 4 591 2070 47 0 4 chr3LHet 886986 887240 -1668251 + PROTOP DNA P 1317 1569 -2911 4 591 3647 53 41 11 chr3LHet 887237 887921 -1667570 + PROTOP DNA P 1717 2468 -2012 4 591 893 206 136 29 chr3LHet 888192 888502 -1666989 - Gypsy3_LTR LTR Gypsy -25 373 31 4 591 9340 204 70 52 chr3LHet 888488 891528 -1663963 - Gypsy3_I LTR Gypsy -817 6195 3739 4 591 10247 159 29 54 chr3LHet 891548 893716 -1661775 - Gypsy3_I LTR Gypsy -3882 2295 254 4 591 1195 78 90 40 chr3LHet 893734 893934 -1661557 + DNAREP1_DM LINE Penelope 364 573 -21 4 591 374 301 0 0 chr3LHet 894218 894321 -1661170 + OSVALDO_I LTR Gypsy 508 610 -6043 4 591 269 301 26 17 chr3LHet 895062 895177 -1660314 + OSVALDO_I LTR Gypsy 2105 2220 -4433 4 591 186 71 0 0 chr3LHet 896361 896389 -1659102 + (GAA)n Simple_repeat Simple_repeat 3 30 0 4 591 46 0 0 0 chr3LHet 898540 898586 -1656905 + AT_rich Low_complexity Low_complexity 1 46 0 4 591 368 293 34 34 chr3LHet 899399 899634 -1655857 + BURDOCK_I LTR Gypsy 850 992 -4868 4 591 30 45 0 0 chr3LHet 900426 900470 -1655021 + AT_rich Low_complexity Low_complexity 1 44 0 4 591 308 307 0 0 chr3LHet 901319 901420 -1654071 + Gypsy_DS LTR Gypsy 3235 3335 -4187 4 591 1283 35 79 0 chr3LHet 901351 901553 -1653938 + TLD2 Unknown Unknown 1 218 0 4 591 382 271 70 32 chr3LHet 901388 901700 -1653791 + DM297_I LTR Gypsy 2668 2991 -3176 4 591 509 335 25 11 chr3LHet 901826 902107 -1653384 + GTWIN_I LTR Gypsy 3254 3538 -2883 4 591 25 0 0 0 chr3LHet 903421 903446 -1652045 + AT_rich Low_complexity Low_complexity 1 25 0 4 591 47 0 0 0 chr3LHet 905268 905315 -1650176 + AT_rich Low_complexity Low_complexity 1 47 0 4 591 292 360 33 32 chr3LHet 905544 906264 -1649227 + Invader3_I LTR Gypsy 2309 3029 -1859 4 591 327 328 16 10 chr3LHet 907019 907213 -1648278 + BLASTOPIA_I LTR Gypsy 3541 3735 -746 4 591 213 39 0 0 chr3LHet 908263 908289 -1647202 + (CAAAT)n Simple_repeat Simple_repeat 3 28 0 4 591 4681 57 170 3 chr3LHet 908298 909237 -1646254 + DMCR1A LINE CR1 3375 4470 0 4 591 852 200 28 32 chr3LHet 910250 910498 -1644993 + DM412 LTR Gypsy 5728 5974 -923 4 591 427 173 246 21 chr3LHet 910475 910617 -1644874 + DM412 LTR Gypsy 6121 6294 -603 4 591 2761 114 122 15 chr3LHet 910625 911159 -1644332 + DNAREP1_DM LINE Penelope 1 591 -3 4 591 601 149 141 90 chr3LHet 911188 911365 -1644126 + DNAREP1_DM LINE Penelope 370 555 -39 4 591 22 0 0 0 chr3LHet 911774 911796 -1643695 + AT_rich Low_complexity Low_complexity 1 22 0 4 591 212 125 50 0 chr3LHet 911796 911836 -1643655 + (CATA)n Simple_repeat Simple_repeat 2 43 0 4 591 306 226 71 57 chr3LHet 911868 912009 -1643482 + DNAREP1_DM LINE Penelope 20 162 -432 4 591 567 186 47 0 chr3LHet 912509 912635 -1642856 - DMCR1A LINE CR1 -289 4181 4050 4 591 290 74 278 0 chr3LHet 912635 912689 -1642802 + DNAREP1_DM LINE Penelope 1 69 -525 4 591 1305 114 4 35 chr3LHet 912682 912909 -1642582 + DNAREP1_DM LINE Penelope 375 594 0 4 591 862 213 128 16 chr3LHet 912864 913170 -1642321 - DMCR1A LINE CR1 -375 4095 3756 4 591 289 160 390 0 chr3LHet 913188 913288 -1642203 - DMCR1A LINE CR1 -1562 2908 2770 4 591 512 174 18 0 chr3LHet 913296 913405 -1642086 - DMCR1A LINE CR1 -1988 2482 2372 4 591 23 0 0 0 chr3LHet 913523 913546 -1641945 + AT_rich Low_complexity Low_complexity 1 23 0 4 591 363 157 125 19 chr3LHet 913869 913973 -1641518 + DM297_LTR LTR Gypsy 282 396 -18 4 591 331 78 45 30 chr3LHet 913989 914055 -1641436 + DM297_I LTR Gypsy 1 67 -6100 4 591 1617 166 48 34 chr3LHet 914061 914669 -1640822 + DNAREP1_DM LINE Penelope 2 491 -103 4 591 311 298 26 26 chr3LHet 915578 915733 -1639758 - BLASTOPIA_I LTR Gypsy -773 3708 3554 4 591 25 31 0 0 chr3LHet 916296 916328 -1639163 + AT_rich Low_complexity Low_complexity 1 32 0 4 591 1634 125 58 32 chr3LHet 916449 916797 -1638694 - Gypsy12A_LTR LTR Gypsy -995 1285 929 4 591 537 56 0 0 chr3LHet 916828 916899 -1638592 - Mariner2_DM DNA Tc1 0 912 842 4 591 2687 68 31 5 chr3LHet 916898 917282 -1638209 - Mariner2_DM DNA Tc1 -195 717 324 4 591 25 0 0 0 chr3LHet 917291 917316 -1638175 + AT_rich Low_complexity Low_complexity 1 25 0 4 73 2278 176 103 83 chr3LHet 917316 918096 -1637395 - Gypsy12A_LTR LTR Gypsy -1485 795 1 4 592 1442 119 13 9 chr3LHet 918099 918327 -1637164 - Gypsy12_I LTR Gypsy -5 5541 5313 4 592 2861 170 81 2 chr3LHet 918328 918871 -1636620 - Gypsy12_I LTR Gypsy -433 5113 4528 4 592 3267 42 59 0 chr3LHet 918890 919361 -1636130 - DOC5_DM LINE Jockey 0 4682 4184 4 592 8014 60 134 49 chr3LHet 919360 920730 -1634761 - DOC5_DM LINE Jockey -657 4025 2540 4 592 1672 41 0 0 chr3LHet 920752 920973 -1634518 + DOC5_DM LINE Jockey 1712 1932 -2750 4 592 6088 44 29 0 chr3LHet 920967 921807 -1633684 - DOC5_DM LINE Jockey -2974 1708 845 4 592 3912 26 78 0 chr3LHet 921802 922330 -1633161 - DOC5_DM LINE Jockey -4113 569 1 4 592 3035 191 185 1 chr3LHet 922327 923165 -1632326 - Gypsy12_I LTR Gypsy -1002 4544 3553 4 592 711 131 20 68 chr3LHet 924117 924264 -1631227 - Invader1_LTR LTR Gypsy -281 142 3 4 592 255 167 0 0 chr3LHet 924266 924308 -1631183 - Invader1_I LTR Gypsy 0 3186 3145 4 592 13393 112 110 44 chr3LHet 924370 924505 -1630986 - Invader1_I LTR Gypsy -49 3137 2975 4 592 339 44 0 0 chr3LHet 924505 924550 -1630941 + (TAA)n Simple_repeat Simple_repeat 2 46 0 4 592 13393 112 110 44 chr3LHet 924550 927092 -1628399 - Invader1_I LTR Gypsy -212 2974 283 4 592 920 117 7 7 chr3LHet 927092 927238 -1628253 - Invader1_LTR LTR Gypsy -3 420 275 4 592 378 241 7 58 chr3LHet 927781 927935 -1627556 - Gypsy8_I LTR Gypsy -4118 229 84 4 592 342 162 75 0 chr3LHet 928038 928118 -1627373 - Gypsy8_I LTR Gypsy -4261 86 1 4 592 590 186 1 128 chr3LHet 928149 928362 -1627129 - Gypsy8_LTR LTR Gypsy -3 301 67 4 592 646 133 26 0 chr3LHet 928396 928509 -1626982 - Invader1_LTR LTR Gypsy -281 142 27 4 592 852 189 47 0 chr3LHet 928515 928705 -1626786 - DNAREP1_DM LINE Penelope -115 479 281 4 592 714 58 135 0 chr3LHet 929196 929300 -1626191 + DNAREP1_DM LINE Penelope 374 491 -103 4 592 1194 115 55 0 chr3LHet 929455 929655 -1625836 + Gypsy12A_LTR LTR Gypsy 30 240 -2040 4 592 1240 129 142 36 chr3LHet 929654 929984 -1625507 + Gypsy12A_LTR LTR Gypsy 883 1247 -1033 4 592 307 307 100 31 chr3LHet 931138 931427 -1624064 + BLASTOPIA_I LTR Gypsy 2824 3132 -1349 4 592 402 329 35 21 chr3LHet 931496 931779 -1623712 + BLASTOPIA_I LTR Gypsy 3366 3652 -829 4 592 26 30 0 0 chr3LHet 934145 934178 -1621313 + AT_rich Low_complexity Low_complexity 1 33 0 4 592 1542 296 26 31 chr3LHet 934252 935057 -1620434 - HMSBEAGLE_I LTR Gypsy -753 5776 4976 4 592 2317 305 64 30 chr3LHet 935127 938163 -1617328 - HMSBEAGLE_I LTR Gypsy -1939 4590 1450 4 592 26 50 0 0 chr3LHet 938588 938628 -1616863 + AT_rich Low_complexity Low_complexity 1 40 0 4 592 25 80 0 39 chr3LHet 938693 938797 -1616694 + AT_rich Low_complexity Low_complexity 1 100 0 4 592 1498 167 69 29 chr3LHet 939891 940237 -1615254 - DMCR1A LINE CR1 -301 4169 3810 4 592 1607 159 179 6 chr3LHet 940311 940664 -1614827 + DMRT1B LINE R1 2111 2524 -2659 4 592 1217 189 75 4 chr3LHet 940653 940918 -1614573 + DMRT1B LINE R1 4458 4741 -442 4 592 530 134 80 9 chr3LHet 940925 941038 -1614453 + DNAREP1_DM LINE Penelope 162 282 -312 4 592 205 51 50 25 chr3LHet 941339 941379 -1614112 + (TAATG)n Simple_repeat Simple_repeat 1 41 0 4 592 265 321 9 9 chr3LHet 942168 942278 -1613213 - NOMAD_I LTR Gypsy -283 6289 6180 4 592 327 346 58 0 chr3LHet 942750 942993 -1612498 - NOMAD_I LTR Gypsy -1823 4749 4493 4 592 384 294 126 8 chr3LHet 943134 943486 -1612005 - NOMAD_I LTR Gypsy -2375 4197 3768 4 592 402 325 15 10 chr3LHet 943612 943817 -1611674 - NOMAD_I LTR Gypsy -3055 3517 3312 4 592 308 254 113 73 chr3LHet 943954 944158 -1611333 - NOMAD_I LTR Gypsy -3960 2612 2401 4 592 413 136 173 0 chr3LHet 944946 945027 -1610464 + DNAREP1_DM LINE Penelope 440 534 -60 4 592 280 303 189 0 chr3LHet 945919 946104 -1609387 - Invader6_I LTR Gypsy -1480 2619 2400 4 592 212 194 56 0 chr3LHet 946651 946723 -1608768 + (TTA)n Simple_repeat Simple_repeat 1 76 0 4 592 1056 166 43 31 chr3LHet 946726 946981 -1608510 - ROO_I LTR Pao -390 7866 7609 4 592 994 51 14 0 chr3LHet 946988 947126 -1608365 - G_DM LINE Jockey 0 4346 4207 4 592 1367 163 70 0 chr3LHet 947116 947373 -1608118 - ROO_I LTR Pao -641 7615 7341 4 592 485 120 0 0 chr3LHet 947371 947446 -1608045 - ROO_I LTR Pao -1357 6899 6825 4 592 894 196 40 5 chr3LHet 947529 947729 -1607762 - DNAREP1_DM LINE Penelope -376 218 12 4 592 2268 134 39 29 chr3LHet 947740 948044 -1607447 - DNAREP1_DM LINE Penelope -40 554 247 4 592 207 69 0 0 chr3LHet 948044 948073 -1607418 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4 592 2268 142 37 27 chr3LHet 948073 948200 -1607291 - DNAREP1_DM LINE Penelope -262 332 136 4 592 308 269 159 19 chr3LHet 948899 949157 -1606334 - Ulysses_I LTR Gypsy -221 6160 5867 4 592 308 295 59 46 chr3LHet 949205 949443 -1606048 - Ulysses_I LTR Gypsy -2994 3387 3147 4 592 1083 208 120 24 chr3LHet 949670 950094 -1605397 + ROO_I LTR Pao 6357 6821 -1435 4 592 2164 119 167 0 chr3LHet 950134 950554 -1604937 + DNAREP1_DM LINE Penelope 1 490 -104 4 592 3123 132 61 20 chr3LHet 950557 951144 -1604347 - QUASIMODO_LTR LTR Gypsy -3 655 45 4 592 40965 35 33 1 chr3LHet 951159 956048 -1599443 - DMRT1B LINE R1 0 5183 143 4 592 180 0 0 0 chr3LHet 956048 956068 -1599423 + (TTAAA)n Simple_repeat Simple_repeat 3 22 0 4 592 40965 35 33 1 chr3LHet 956068 956197 -1599294 - DMRT1B LINE R1 -5041 142 2 4 592 5731 11 3 1 chr3LHet 956252 956909 -1598582 + QUASIMODO_LTR LTR Gypsy 1 658 0 4 592 3062 14 0 8 chr3LHet 956909 957268 -1598223 + QUASIMODO_I LTR Gypsy 1 356 -5704 4 592 44693 11 13 0 chr3LHet 957265 962595 -1592896 + QUASIMODO_I LTR Gypsy 662 6060 0 4 592 5866 5 0 1 chr3LHet 962595 963254 -1592237 + QUASIMODO_LTR LTR Gypsy 1 658 0 4 592 1152 81 91 0 chr3LHet 963274 963460 -1592031 + QUASIMODO_LTR LTR Gypsy 1 203 -455 4 592 4829 34 2 2 chr3LHet 963462 964056 -1591435 + IDEFIX_LTR LTR Gypsy 1 594 0 4 592 24 0 0 0 chr3LHet 964246 964270 -1591221 + AT_rich Low_complexity Low_complexity 1 24 0 4 592 28831 48 12 4 chr3LHet 964583 968304 -1587187 + IDEFIX_I LTR Gypsy 1 3750 -1878 4 592 1419 71 0 0 chr3LHet 968302 968498 -1586993 + IDEFIX_I LTR Gypsy 3951 4146 -1482 4 592 366 245 0 0 chr3LHet 968488 968590 -1586901 + ROO_I LTR Pao 7797 7898 -358 4 592 6454 334 33 33 chr3LHet 970134 974216 -1581275 - GTWIN_I LTR Gypsy -1534 4887 804 4 592 24 96 0 0 chr3LHet 975527 975600 -1579891 + AT_rich Low_complexity Low_complexity 1 73 0 4 592 25 0 0 0 chr3LHet 976839 976864 -1578627 + AT_rich Low_complexity Low_complexity 1 25 0 4 592 511 313 45 71 chr3LHet 978222 978894 -1576597 - BURDOCK_I LTR Gypsy -2932 3489 2668 4 592 1342 35 79 0 chr3LHet 978729 978931 -1576560 - TLD2 Unknown Unknown 0 218 1 4 592 325 275 0 0 chr3LHet 978862 978942 -1576549 - Gypsy_DS LTR Gypsy -4187 3335 3256 4 592 403 335 33 40 chr3LHet 980462 980870 -1574621 - Gypsy3_I LTR Gypsy -5228 1784 1179 4 592 9311 23 0 10 chr3LHet 981000 982116 -1573375 - PROTOP_A DNA P 0 1105 1 4 592 2105 28 12 0 chr3LHet 982116 982368 -1573123 - Invader2_LTR LTR Gypsy -11 255 1 4 592 47 0 0 0 chr3LHet 983177 983224 -1572267 + AT_rich Low_complexity Low_complexity 1 47 0 4 592 22707 39 9 2 chr3LHet 983667 986473 -1569018 - STALKER4_I LTR Gypsy -694 5836 3013 4 592 7128 150 114 24 chr3LHet 986472 987983 -1567508 - STALKER4_I LTR Gypsy -4256 2274 627 4 592 503 271 0 7 chr3LHet 987999 988140 -1567351 - STALKER4_I LTR Gypsy -6155 375 236 4 592 24 67 0 0 chr3LHet 988771 988816 -1566675 + AT_rich Low_complexity Low_complexity 1 45 0 4 592 310 167 24 0 chr3LHet 989075 989159 -1566332 + (TA)n Simple_repeat Simple_repeat 2 87 0 4 592 272 173 0 19 chr3LHet 990362 990415 -1565076 + Gypsy8_LTR LTR Gypsy 1 52 -252 4 592 8013 97 71 2 chr3LHet 991131 992726 -1562765 - S_DM DNA Tc1 -31 1705 1 4 592 25 99 0 0 chr3LHet 993012 993093 -1562398 + AT_rich Low_complexity Low_complexity 1 81 0 4 592 622 95 29 9 chr3LHet 993293 993409 -1562082 + DNAREP1_DM LINE Penelope 137 332 -262 4 592 3426 38 14 12 chr3LHet 993424 993846 -1561645 - G5_DM LINE Jockey 0 4856 4434 4 592 359 18 0 0 chr3LHet 993909 993965 -1561526 - FW_DM LINE Jockey -4 4688 4633 4 592 389 347 65 65 chr3LHet 994391 995523 -1559968 - Copia2_I LTR Copia -283 3879 2748 4 592 333 340 29 59 chr3LHet 996203 996704 -1558787 - Copia2_I LTR Copia -2263 1899 1497 4 592 6663 13 26 0 chr3LHet 998126 998897 -1556594 - DMRT1A LINE R1 -2 5181 4391 4 592 9876 6 5 0 chr3LHet 998897 1000000 -1555491 - DMRT1A LINE R1 -2714 2469 1361 4 592 3598 18 29 0 chr3LHet 1000000 1000454 -1555037 - DMRT1A LINE R1 -3823 1360 894 4 592 202 143 0 28 chr3LHet 1000454 1000490 -1555001 + (TATG)n Simple_repeat Simple_repeat 2 36 0 4 592 10154 33 30 0 chr3LHet 1000673 1001962 -1553529 - FW_DM LINE Jockey -3360 1332 5 4 592 706 126 67 0 chr3LHet 1001984 1002103 -1553388 + DNAREP1_DM LINE Penelope 338 464 -130 4 592 1632 65 4 0 chr3LHet 1003003 1003251 -1552240 - DM297_I LTR Gypsy -343 5824 5576 4 592 1987 46 0 0 chr3LHet 1003262 1003521 -1551970 - DM297_I LTR Gypsy -785 5382 5124 4 592 7056 59 18 21 chr3LHet 1003514 1004570 -1550921 - DM297_I LTR Gypsy -1862 4305 3253 4 592 2669 70 133 4 chr3LHet 1004577 1005049 -1550442 - DM297_I LTR Gypsy -3749 2418 1886 4 592 3687 70 84 23 chr3LHet 1005064 1006120 -1549371 - DM297_I LTR Gypsy -5045 1122 2 4 592 1741 104 119 57 chr3LHet 1006123 1006511 -1548980 - DM297_LTR LTR Gypsy -2 412 1 4 592 21 0 0 0 chr3LHet 1007169 1007190 -1548301 + AT_rich Low_complexity Low_complexity 1 21 0 4 592 21 0 0 0 chr3LHet 1007227 1007248 -1548243 + AT_rich Low_complexity Low_complexity 1 21 0 4 592 22 0 0 0 chr3LHet 1007374 1007396 -1548095 + AT_rich Low_complexity Low_complexity 1 22 0 4 592 21 0 0 0 chr3LHet 1007811 1007832 -1547659 + AT_rich Low_complexity Low_complexity 1 21 0 4 592 274 297 87 64 chr3LHet 1010251 1010517 -1544974 + BLASTOPIA_I LTR Gypsy 2668 2939 -1542 4 592 40529 1 0 0 chr3LHet 1011266 1015957 -1539534 + FW_DM LINE Jockey 1 4692 0 4 592 370 321 0 0 chr3LHet 1016241 1016381 -1539110 + BLASTOPIA_I LTR Gypsy 4237 4376 -105 4 592 3927 47 68 0 chr3LHet 1016598 1017189 -1538302 - PROTOP_B DNA P 0 1153 523 4 592 743 43 0 0 chr3LHet 1017193 1017285 -1538206 - PROTOP_B DNA P -1060 93 2 4 592 21 0 0 0 chr3LHet 1017807 1017828 -1537663 + AT_rich Low_complexity Low_complexity 1 21 0 4 592 27 29 0 0 chr3LHet 1018471 1018505 -1536986 + AT_rich Low_complexity Low_complexity 1 34 0 4 592 21 0 0 0 chr3LHet 1019156 1019177 -1536314 + AT_rich Low_complexity Low_complexity 1 21 0 4 592 26 50 0 0 chr3LHet 1019226 1019266 -1536225 + AT_rich Low_complexity Low_complexity 1 40 0 4 592 1330 111 81 0 chr3LHet 1020059 1020293 -1535198 - DNAREP1_DM LINE Penelope -337 257 5 4 592 518 170 0 0 chr3LHet 1020710 1020804 -1534687 - DMRT1B LINE R1 -258 4925 4832 4 592 31759 20 33 1 chr3LHet 1020805 1024760 -1530731 - DMRT1B LINE R1 -388 4795 713 4 592 448 0 0 0 chr3LHet 1024761 1024815 -1530676 - QUASIMODO_LTR LTR Gypsy -604 54 1 4 592 48500 10 13 2 chr3LHet 1024815 1030808 -1524683 - QUASIMODO_I LTR Gypsy 0 6060 1 4 592 5653 3 0 0 chr3LHet 1030808 1031465 -1524026 - QUASIMODO_LTR LTR Gypsy 0 658 2 4 592 401 103 15 0 chr3LHet 1031465 1031533 -1523958 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 592 222 231 0 0 chr3LHet 1031610 1031675 -1523816 + (TA)n Simple_repeat Simple_repeat 2 66 0 4 592 21 0 0 0 chr3LHet 1031769 1031790 -1523701 + AT_rich Low_complexity Low_complexity 1 21 0 4 592 236 253 90 50 chr3LHet 1031863 1031963 -1523528 + DNAREP1_DM LINE Penelope 489 592 -2 4 592 350 149 10 147 chr3LHet 1032202 1032304 -1523187 - DNAREP1_DM LINE Penelope -6 588 501 4 592 1069 50 12 12 chr3LHet 1032308 1032471 -1523020 + S2_DM DNA Tc1 1 163 -1572 4 592 314 173 0 58 chr3LHet 1032497 1032583 -1522908 - DNAREP1_DM LINE Penelope -26 568 488 4 592 284 155 117 58 chr3LHet 1032706 1032809 -1522682 - Gypsy2_LTR LTR Gypsy -150 203 95 4 592 3941 233 7 40 chr3LHet 1032823 1033814 -1521677 - Gypsy2_I LTR Gypsy -91 6044 5087 4 592 240 353 0 0 chr3LHet 1033966 1034068 -1521423 - G2_DM LINE Jockey -2720 382 281 4 592 24 32 0 0 chr3LHet 1035023 1035054 -1520437 + AT_rich Low_complexity Low_complexity 1 31 0 4 592 245 279 0 0 chr3LHet 1035060 1035128 -1520363 + Invader4_I LTR Gypsy 1235 1302 -1111 4 592 932 342 61 29 chr3LHet 1035153 1036090 -1519401 + Invader6_I LTR Gypsy 1629 2595 -1504 4 592 249 278 22 11 chr3LHet 1036506 1036597 -1518894 + Invader4_I LTR Gypsy 1783 1874 -539 4 592 828 139 375 0 chr3LHet 1037408 1037620 -1517871 + DNAREP1_DM LINE Penelope 304 594 0 4 592 195 42 0 0 chr3LHet 1037909 1037933 -1517558 + (TA)n Simple_repeat Simple_repeat 2 25 0 4 592 282 56 0 0 chr3LHet 1037969 1038005 -1517486 + (TA)n Simple_repeat Simple_repeat 1 36 0 4 592 4577 4 2 0 chr3LHet 1038005 1038539 -1516952 - QUASIMODO_LTR LTR Gypsy 0 658 124 4 592 614 313 23 30 chr3LHet 1038620 1039015 -1516476 + Invader5_I LTR Gypsy 1228 1619 -1715 4 592 2867 306 19 21 chr3LHet 1039078 1040345 -1515146 + Invader1_I LTR Gypsy 1301 2564 -622 4 592 600 0 0 0 chr3LHet 1041380 1041453 -1514038 - QUASIMODO_LTR LTR Gypsy -531 127 55 4 592 6465 16 4 0 chr3LHet 1041455 1042227 -1513264 - DMRT1B LINE R1 0 5183 4409 4 592 1476 294 2 2 chr3LHet 1042227 1042700 -1512791 + Invader1_I LTR Gypsy 1744 2216 -970 4 592 18759 13 0 0 chr3LHet 1042697 1044925 -1510566 - DMRT1B LINE R1 -89 5094 2866 4 592 3574 37 2 0 chr3LHet 1044918 1045374 -1510117 - DMRT1B LINE R1 -2498 2685 2229 4 592 1273 139 151 0 chr3LHet 1045370 1045622 -1509869 - DMRT1B LINE R1 -3113 2070 1781 4 592 498 178 259 0 chr3LHet 1045619 1045754 -1509737 - DMRT1B LINE R1 -3534 1649 1480 4 592 698 165 0 15 chr3LHet 1045922 1046057 -1509434 + DMLTR5 LTR Gypsy 134 266 0 4 592 573 149 70 9 chr3LHet 1046056 1046171 -1509320 + HMSBEAGLE_I LTR Gypsy 1 122 -6407 4 592 552 183 56 103 chr3LHet 1046152 1046365 -1509126 + HMSBEAGLE_I LTR Gypsy 279 481 -6048 4 592 242 200 59 10 chr3LHet 1046330 1046431 -1509060 + ROO_I LTR Pao 648 753 -7503 4 592 7829 109 23 2 chr3LHet 1046448 1047652 -1507839 + HMSBEAGLE_I LTR Gypsy 1143 2372 -4157 4 592 2900 87 26 0 chr3LHet 1047650 1048074 -1507417 + HMSBEAGLE_I LTR Gypsy 2521 2955 -3574 4 592 363 119 17 0 chr3LHet 1048074 1048133 -1507358 + HMSBEAGLE_I LTR Gypsy 3952 4011 -2518 4 9 7754 109 77 9 chr3LHet 1048123 1049783 -1505708 + HMSBEAGLE_I LTR Gypsy 4183 5955 -574 4 593 675 111 183 144 chr3LHet 1049779 1050063 -1505428 + HMSBEAGLE_I LTR Gypsy 6072 6366 -163 4 593 315 87 0 0 chr3LHet 1050284 1050330 -1505161 + HMSBEAGLE_I LTR Gypsy 6360 6405 -124 4 593 186 174 0 0 chr3LHet 1050382 1050428 -1505063 + A-rich Low_complexity Low_complexity 1 46 0 4 593 302 87 0 0 chr3LHet 1050450 1050496 -1504995 + HMSBEAGLE_I LTR Gypsy 6404 6449 -80 4 593 276 211 0 14 chr3LHet 1050494 1050566 -1504925 + DMLTR5 LTR Gypsy 188 258 -8 4 593 1209 116 76 36 chr3LHet 1050561 1050784 -1504707 - DNAREP1_DM LINE Penelope -15 579 348 4 593 34 24 0 0 chr3LHet 1050861 1050902 -1504589 + AT_rich Low_complexity Low_complexity 1 41 0 4 593 580 105 0 0 chr3LHet 1050902 1050988 -1504503 - DNAREP1_DM LINE Penelope -493 101 16 4 593 365 280 0 0 chr3LHet 1051745 1051845 -1503646 + DIVER2_I LTR Pao 3506 3605 -542 4 593 890 214 101 7 chr3LHet 1051846 1052158 -1503333 - PROTOP DNA P 0 4480 4137 4 593 29 0 0 0 chr3LHet 1052344 1052373 -1503118 + AT_rich Low_complexity Low_complexity 1 29 0 4 593 1470 38 0 0 chr3LHet 1052993 1053290 -1502201 + (TAA)n Simple_repeat Simple_repeat 1 297 0 4 593 11221 94 135 5 chr3LHet 1054221 1056854 -1498637 - DMCR1A LINE CR1 -68 4402 1426 4 593 576 107 52 35 chr3LHet 1057260 1057376 -1498115 + DM297_LTR LTR Gypsy 279 396 -18 4 593 740 132 100 8 chr3LHet 1057360 1057626 -1497865 - DNAREP1_DM LINE Penelope -170 424 8 4 593 1638 141 61 82 chr3LHet 1058246 1058625 -1496866 + MICROPIA_LTR LTR Gypsy 93 463 -13 4 593 1512 138 171 121 chr3LHet 1059448 1059952 -1495539 + DNAREP1_DM LINE Penelope 1 529 -65 4 593 270 241 92 9 chr3LHet 1059992 1060101 -1495390 - IDEFIX_I LTR Gypsy -985 4643 4526 4 593 999 233 0 4 chr3LHet 1060097 1060343 -1495148 - IDEFIX_I LTR Gypsy -1422 4206 3962 4 593 3521 55 91 0 chr3LHet 1060375 1060890 -1494601 + DMCR1A LINE CR1 3909 4470 0 4 593 2785 246 123 14 chr3LHet 1060982 1062017 -1493474 - IDEFIX_I LTR Gypsy -1968 3660 2513 4 593 482 183 0 0 chr3LHet 1062046 1062139 -1493352 - IDEFIX_I LTR Gypsy -3188 2440 2348 4 593 1959 237 63 2 chr3LHet 1062140 1062660 -1492831 - IDEFIX_I LTR Gypsy -3404 2224 1673 4 593 6957 25 7 0 chr3LHet 1062669 1063513 -1491978 - DOC3_DM LINE Jockey -1765 2975 2126 4 593 2667 37 11 11 chr3LHet 1063514 1063869 -1491622 - DOC3_DM LINE Jockey -2874 1866 1512 4 593 2884 40 33 2 chr3LHet 1063851 1064247 -1491244 - DOC3_DM LINE Jockey -3690 1050 643 4 593 615 0 0 0 chr3LHet 1064245 1064316 -1491175 - DOC3_DM LINE Jockey -4669 71 1 4 593 831 256 169 6 chr3LHet 1064333 1064659 -1490832 - IDEFIX_I LTR Gypsy -4574 1054 676 4 593 850 239 11 18 chr3LHet 1064689 1064966 -1490525 - IDEFIX_I LTR Gypsy -5111 517 243 4 593 21 36 0 0 chr3LHet 1065359 1065387 -1490104 + AT_rich Low_complexity Low_complexity 1 28 0 4 593 299 101 58 0 chr3LHet 1065544 1065613 -1489878 - IDEFIX_LTR LTR Gypsy -18 576 504 4 593 2675 66 13 10 chr3LHet 1065614 1065999 -1489492 - DMTOM1_LTR LTR Gypsy -23 387 2 4 593 1050 270 39 28 chr3LHet 1065998 1066508 -1488983 - DM297_I LTR Gypsy 0 6112 5597 4 593 1334 239 120 16 chr3LHet 1066522 1067191 -1488300 - DM297_I LTR Gypsy -1112 5000 4307 4 593 519 202 0 0 chr3LHet 1067201 1067300 -1488191 - DM297_I LTR Gypsy -2078 4034 3936 4 593 1158 200 60 16 chr3LHet 1067310 1067700 -1487791 - DM297_I LTR Gypsy -2771 3396 2908 4 593 1275 213 40 0 chr3LHet 1067699 1067999 -1487492 - DM297_I LTR Gypsy -3522 2645 2334 4 593 1884 261 82 58 chr3LHet 1068008 1069105 -1486386 - TOM_I LTR Gypsy -3894 2218 1096 4 593 2969 57 57 0 chr3LHet 1069133 1069539 -1485952 - Baggins1 LINE LOA -45 5408 4980 4 593 2875 49 159 5 chr3LHet 1069543 1069977 -1485514 - Baggins1 LINE LOA -980 4473 3973 4 593 1975 41 79 0 chr3LHet 1069971 1070237 -1485254 - Baggins1 LINE LOA -1645 3808 3522 4 593 9265 37 9 0 chr3LHet 1070250 1071479 -1484012 - MDG1_I LTR Gypsy -381 6215 4976 4 593 19589 96 79 29 chr3LHet 1071478 1075599 -1479892 - MDG1_I LTR Gypsy -2027 4569 242 4 593 9377 40 32 0 chr3LHet 1075614 1076809 -1478682 - Baggins1 LINE LOA -2130 3323 2091 4 593 5786 52 52 0 chr3LHet 1076810 1077585 -1477906 - Baggins1 LINE LOA -3643 1810 996 4 593 2630 89 28 4 chr3LHet 1077583 1078052 -1477439 - Baggins1 LINE LOA -4856 597 3 4 593 1325 259 68 30 chr3LHet 1078074 1078864 -1476627 - DM297_I LTR Gypsy -311 5801 5065 4 593 2789 65 111 9 chr3LHet 1078893 1079537 -1475954 + I_DM LINE I 4750 5459 -772 4 593 1314 47 366 77 chr3LHet 1079537 1079783 -1475708 + NINJA_LTR LTR Pao 1 317 0 4 593 16355 78 68 14 chr3LHet 1079783 1082484 -1473007 + NINJA_I LTR Pao 1 2847 -3164 4 593 16183 26 1 1 chr3LHet 1082461 1084473 -1471018 + NINJA_I LTR Pao 3999 6011 0 4 593 2358 44 3 28 chr3LHet 1084473 1084798 -1470693 + NINJA_LTR LTR Pao 1 317 0 4 593 3089 146 81 84 chr3LHet 1084817 1085720 -1469771 - DM297_I LTR Gypsy -1307 4805 3924 4 593 377 69 17 0 chr3LHet 1085796 1085854 -1469637 - DNAREP1_DM LINE Penelope 0 594 536 4 593 1360 139 48 0 chr3LHet 1085860 1086133 -1469358 - DNAREP1_DM LINE Penelope -263 331 46 4 593 6191 50 14 17 chr3LHet 1086253 1087152 -1468339 - DM297_I LTR Gypsy -2018 4149 3253 4 593 2481 81 146 7 chr3LHet 1087159 1087592 -1467899 - DM297_I LTR Gypsy -3749 2418 1926 4 593 4814 45 0 0 chr3LHet 1087590 1088208 -1467283 - FW_DM LINE Jockey -4070 622 5 4 593 706 126 67 0 chr3LHet 1088230 1088349 -1467142 + DNAREP1_DM LINE Penelope 338 464 -130 4 593 1632 65 4 0 chr3LHet 1089247 1089495 -1465996 - DM297_I LTR Gypsy -343 5824 5576 4 593 1987 46 0 0 chr3LHet 1089506 1089765 -1465726 - DM297_I LTR Gypsy -785 5382 5124 4 593 2810 87 0 5 chr3LHet 1089758 1090187 -1465304 - DM297_I LTR Gypsy -1862 4305 3879 4 593 3109 128 64 0 chr3LHet 1090188 1090751 -1464740 - DM297_I LTR Gypsy -2885 3282 2684 4 593 1318 179 155 14 chr3LHet 1090747 1091121 -1464370 - DM297_I LTR Gypsy -3815 2352 1926 4 593 772 177 0 0 chr3LHet 1092259 1092417 -1463074 + MDG1_I LTR Gypsy 5090 5247 -1349 4 593 502 168 0 99 chr3LHet 1092438 1092583 -1462908 + MAX_I LTR Pao 36 165 -7749 4 593 1036 209 34 36 chr3LHet 1092583 1092940 -1462551 - IDEFIX_LTR LTR Gypsy 0 594 239 4 593 331 65 0 0 chr3LHet 1093092 1093138 -1462353 - IDEFIX_LTR LTR Gypsy -548 46 1 4 593 1216 219 47 12 chr3LHet 1093138 1093540 -1461951 - IDEFIX_I LTR Gypsy 0 5628 5213 4 593 1151 225 124 0 chr3LHet 1093759 1094123 -1461368 - IDEFIX_I LTR Gypsy -1260 4368 3960 4 593 299 231 44 0 chr3LHet 1094132 1094223 -1461268 - IDEFIX_I LTR Gypsy -1772 3856 3762 4 593 2623 253 102 12 chr3LHet 1094243 1095222 -1460269 - IDEFIX_I LTR Gypsy -2050 3578 2513 4 593 482 183 0 0 chr3LHet 1095251 1095344 -1460147 - IDEFIX_I LTR Gypsy -3188 2440 2348 4 593 1959 237 63 2 chr3LHet 1095345 1095865 -1459626 - IDEFIX_I LTR Gypsy -3404 2224 1673 4 593 6942 26 7 0 chr3LHet 1095874 1096718 -1458773 - DOC3_DM LINE Jockey -1765 2975 2126 4 593 2667 37 11 11 chr3LHet 1096719 1097074 -1458417 - DOC3_DM LINE Jockey -2874 1866 1512 4 593 2884 40 33 2 chr3LHet 1097056 1097452 -1458039 - DOC3_DM LINE Jockey -3690 1050 643 4 593 446 30 72 43 chr3LHet 1097450 1097519 -1457972 - DOC3_DM LINE Jockey -4669 71 1 4 593 817 259 169 6 chr3LHet 1097536 1097862 -1457629 - IDEFIX_I LTR Gypsy -4574 1054 676 4 593 869 235 11 18 chr3LHet 1097892 1098169 -1457322 - IDEFIX_I LTR Gypsy -5111 517 243 4 593 21 36 0 0 chr3LHet 1098562 1098590 -1456901 + AT_rich Low_complexity Low_complexity 1 28 0 4 593 299 101 58 0 chr3LHet 1098747 1098816 -1456675 - IDEFIX_LTR LTR Gypsy -18 576 504 4 593 2675 66 13 10 chr3LHet 1098817 1099202 -1456289 - DMTOM1_LTR LTR Gypsy -23 387 2 4 593 1050 270 39 28 chr3LHet 1099201 1099711 -1455780 - TOM_I LTR Gypsy 0 6112 5597 4 593 1676 272 115 3 chr3LHet 1099725 1100404 -1455087 - TOM_I LTR Gypsy -1112 5000 4246 4 593 519 202 0 0 chr3LHet 1100414 1100513 -1454978 - TOM_I LTR Gypsy -2078 4034 3936 4 593 1158 200 60 16 chr3LHet 1100523 1100913 -1454578 - TOM_I LTR Gypsy -2771 3396 2908 4 593 1275 213 40 0 chr3LHet 1100912 1101212 -1454279 - TOM_I LTR Gypsy -3522 2645 2334 4 593 1885 261 82 58 chr3LHet 1101220 1102317 -1453174 - TOM_I LTR Gypsy -3894 2218 1096 4 593 2969 57 57 0 chr3LHet 1102345 1102751 -1452740 - Baggins1 LINE LOA -45 5408 4980 4 593 12149 40 64 2 chr3LHet 1102755 1104370 -1451121 - Baggins1 LINE LOA -980 4473 2759 4 593 40 21 0 0 chr3LHet 1104814 1104861 -1450630 + AT_rich Low_complexity Low_complexity 1 47 0 4 593 350 322 14 16 chr3LHet 1105854 1106095 -1449396 + BURDOCK_I LTR Gypsy 850 997 -4863 4 593 26 0 0 0 chr3LHet 1106858 1106884 -1448607 + AT_rich Low_complexity Low_complexity 1 26 0 4 593 308 307 0 0 chr3LHet 1107761 1107862 -1447629 + Gypsy_DS LTR Gypsy 3235 3335 -4187 4 593 1425 28 28 0 chr3LHet 1107793 1108005 -1447486 + TLD2 Unknown Unknown 1 218 0 4 593 7369 37 158 1 chr3LHet 1109974 1110578 -1444913 + DMCR1A LINE CR1 2219 2894 -1576 4 593 213 65 0 0 chr3LHet 1110578 1110609 -1444882 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 4 593 7369 46 86 1 chr3LHet 1110609 1111343 -1444148 + DMCR1A LINE CR1 2895 3713 -757 4 593 2231 28 88 0 chr3LHet 1111341 1111806 -1443685 + DMCR1A LINE CR1 3965 4470 0 4 593 5799 3 3 3 chr3LHet 1114291 1114949 -1440542 - QUASIMODO_LTR LTR Gypsy 0 658 1 4 593 747 112 0 15 chr3LHet 1114974 1115110 -1440381 - S_DM DNA Tc1 0 1736 1603 4 593 9398 97 5 6 chr3LHet 1115123 1116486 -1439005 - S_DM DNA Tc1 -374 1362 1 4 593 219 69 0 0 chr3LHet 1116979 1117008 -1438483 + (TA)n Simple_repeat Simple_repeat 1 29 0 4 593 3303 84 14 10 chr3LHet 1117008 1117502 -1437989 + ACCORD2_I LTR Gypsy 1874 2369 -4843 4 593 658 90 0 0 chr3LHet 1117503 1117592 -1437899 + ACCORD2_I LTR Gypsy 2676 2764 -4448 4 593 742 320 33 18 chr3LHet 1117607 1117944 -1437547 + Gypsy_DS LTR Gypsy 2994 3335 -4187 4 593 878 44 66 0 chr3LHet 1117880 1118017 -1437474 + TLD2 Unknown Unknown 1 146 -72 4 593 305 268 32 29 chr3LHet 1118171 1118311 -1437180 + BURDOCK_I LTR Gypsy 3296 3400 -2460 4 593 1176 65 0 194 chr3LHet 1119059 1119307 -1436184 + ACCORD2_I LTR Gypsy 2895 3094 -4118 4 593 2778 0 6 0 chr3LHet 1119317 1119636 -1435855 - QUASIMODO_LTR LTR Gypsy -337 321 1 4 593 783 112 0 0 chr3LHet 1119661 1119795 -1435696 - S_DM DNA Tc1 0 1736 1603 4 593 9451 95 5 6 chr3LHet 1119808 1121171 -1434320 - S_DM DNA Tc1 -374 1362 1 4 593 246 112 0 263 chr3LHet 1121538 1121671 -1433820 + ACCORD2_I LTR Gypsy 1931 2028 -5184 4 593 4490 6 0 0 chr3LHet 1121682 1122189 -1433302 + DM176_LTR LTR Gypsy 1 507 0 4 593 27973 3 8 21 chr3LHet 1122189 1125535 -1429956 + DM176_I LTR Gypsy 1 3301 -3119 4 593 427 0 0 0 chr3LHet 1125548 1125595 -1429896 + DM176_I LTR Gypsy 3582 3628 -2792 4 593 16526 1 0 0 chr3LHet 1125587 1127495 -1427996 + DM176_I LTR Gypsy 4513 6420 0 4 593 4490 6 0 0 chr3LHet 1127495 1128002 -1427489 + DM176_LTR LTR Gypsy 1 507 0 4 593 3374 86 14 10 chr3LHet 1128009 1128516 -1426975 + ACCORD2_I LTR Gypsy 1861 2369 -4843 4 593 658 90 0 0 chr3LHet 1128517 1128606 -1426885 + ACCORD2_I LTR Gypsy 2676 2764 -4448 4 593 742 320 33 18 chr3LHet 1128621 1128958 -1426533 + Gypsy_DS LTR Gypsy 2994 3335 -4187 4 593 878 44 66 0 chr3LHet 1128894 1129031 -1426460 + TLD2 Unknown Unknown 1 146 -72 4 593 355 226 57 48 chr3LHet 1129170 1129324 -1426167 + Gypsy4_I LTR Gypsy 3232 3400 -2460 4 593 12673 64 76 38 chr3LHet 1130072 1131999 -1423492 + ACCORD2_I LTR Gypsy 2895 4895 -2317 4 593 482 78 0 0 chr3LHet 1131997 1132061 -1423430 + ACCORD2_I LTR Gypsy 5383 5446 -1766 4 593 5688 49 12 15 chr3LHet 1132054 1132794 -1422697 + ACCORD2_I LTR Gypsy 5699 6436 -776 4 593 23 0 0 0 chr3LHet 1132855 1132878 -1422613 + AT_rich Low_complexity Low_complexity 1 23 0 4 593 1922 121 7 10 chr3LHet 1132969 1133279 -1422212 + DNAREP1_DM LINE Penelope 24 332 -262 4 593 2043 144 3 29 chr3LHet 1133301 1133681 -1421810 + DNAREP1_DM LINE Penelope 116 485 -109 4 593 34 42 0 0 chr3LHet 1134539 1134587 -1420904 + AT_rich Low_complexity Low_complexity 1 48 0 4 593 25 0 0 0 chr3LHet 1136336 1136361 -1419130 + AT_rich Low_complexity Low_complexity 1 25 0 4 593 29 28 0 0 chr3LHet 1138242 1138278 -1417213 + AT_rich Low_complexity Low_complexity 1 36 0 4 593 34 0 0 0 chr3LHet 1140438 1140472 -1415019 + AT_rich Low_complexity Low_complexity 1 34 0 4 593 33 0 0 0 chr3LHet 1142799 1142832 -1412659 + AT_rich Low_complexity Low_complexity 1 33 0 4 593 34 55 0 0 chr3LHet 1143371 1143426 -1412065 + AT_rich Low_complexity Low_complexity 1 55 0 4 593 21 71 0 0 chr3LHet 1144028 1144070 -1411421 + AT_rich Low_complexity Low_complexity 1 42 0 4 593 22 35 0 0 chr3LHet 1144081 1144110 -1411381 + AT_rich Low_complexity Low_complexity 1 29 0 4 593 61 45 0 0 chr3LHet 1144243 1144332 -1411159 + AT_rich Low_complexity Low_complexity 1 89 0 4 593 1173 97 109 18 chr3LHet 1144362 1144582 -1410909 + DNAREP1_DM LINE Penelope 2 241 -353 4 593 660 191 61 0 chr3LHet 1145050 1145181 -1410310 - DNAREP1_DM LINE Penelope -185 409 271 4 593 27 49 0 0 chr3LHet 1145387 1145428 -1410063 + AT_rich Low_complexity Low_complexity 1 41 0 4 593 22 0 0 0 chr3LHet 1145768 1145790 -1409701 + AT_rich Low_complexity Low_complexity 1 22 0 4 593 21 0 0 0 chr3LHet 1145921 1145942 -1409549 + AT_rich Low_complexity Low_complexity 1 21 0 4 593 1072 148 205 26 chr3LHet 1146179 1146577 -1408914 + DNAREP1_DM LINE Penelope 1 591 -3 4 593 279 287 169 0 chr3LHet 1146725 1146861 -1408630 - DIVER2_I LTR Pao -1400 2747 2589 4 593 960 299 65 29 chr3LHet 1147418 1147803 -1407688 - DIVER2_I LTR Pao -1831 2316 1918 4 593 643 316 8 8 chr3LHet 1147807 1148053 -1407438 - DIVER2_I LTR Pao -2344 1803 1558 4 593 580 75 92 51 chr3LHet 1148137 1148235 -1407256 - DNAREP1_DM LINE Penelope 0 594 493 4 593 216 0 0 0 chr3LHet 1149233 1149257 -1406234 + (TTA)n Simple_repeat Simple_repeat 2 25 0 4 593 1661 318 95 22 chr3LHet 1149406 1150844 -1404647 - Invader1_I LTR Gypsy -1222 3254 1301 4 593 25695 168 28 11 chr3LHet 1151070 1155572 -1399919 + Gypsy_I LTR Gypsy 1926 6504 -3 4 593 228 153 77 92 chr3LHet 1155601 1155666 -1399825 + Gypsy_DS LTR Gypsy 77 140 -7382 4 593 679 186 59 40 chr3LHet 1155718 1155920 -1399571 + Gypsy_LTR LTR Gypsy 257 462 -20 4 593 2880 89 25 62 chr3LHet 1155958 1156446 -1399045 - DOC5_DM LINE Jockey -1636 3046 2577 4 593 271 288 58 62 chr3LHet 1156444 1156703 -1398788 + Transib5 DNA Transib 26 283 -2718 4 593 23 54 0 0 chr3LHet 1156716 1156753 -1398738 + AT_rich Low_complexity Low_complexity 1 37 0 4 593 264 159 73 73 chr3LHet 1156896 1156964 -1398527 + Gypsy4_I LTR Gypsy 4324 4391 -1897 4 593 25 0 0 0 chr3LHet 1157328 1157353 -1398138 + AT_rich Low_complexity Low_complexity 1 25 0 4 593 39 92 0 0 chr3LHet 1158318 1158427 -1397064 + AT_rich Low_complexity Low_complexity 1 109 0 4 593 43 20 0 0 chr3LHet 1158981 1159031 -1396460 + AT_rich Low_complexity Low_complexity 1 50 0 4 593 2309 117 13 2 chr3LHet 1159047 1159443 -1396048 + STALKER4_I LTR Gypsy 5833 6232 -298 4 593 3198 47 25 14 chr3LHet 1159791 1160220 -1395271 - STALKER4_LTR LTR Gypsy -3 399 1 4 593 42074 9 1 1 chr3LHet 1160220 1165073 -1390418 - STALKER4_I LTR Gypsy 0 6530 1681 4 593 2386 176 47 34 chr3LHet 1165116 1165674 -1389817 - Stalker2_I LTR Gypsy -6547 855 291 4 593 25 0 0 0 chr3LHet 1165698 1165723 -1389768 + AT_rich Low_complexity Low_complexity 1 25 0 4 593 1287 66 0 6 chr3LHet 1165755 1165923 -1389568 - STALKER4_LTR LTR Gypsy -38 364 198 4 593 565 62 12 36 chr3LHet 1165902 1165985 -1389506 - STALKER4_LTR LTR Gypsy -321 81 1 4 593 948 234 0 0 chr3LHet 1165987 1166179 -1389312 - Gypsy6_I LTR Gypsy -4605 2407 2216 4 593 2877 299 16 17 chr3LHet 1166437 1167410 -1388081 - Gypsy6_I LTR Gypsy -5143 1869 642 4 593 21 57 0 0 chr3LHet 1167571 1167606 -1387885 + AT_rich Low_complexity Low_complexity 1 35 0 4 593 31 44 0 0 chr3LHet 1167644 1167689 -1387802 + AT_rich Low_complexity Low_complexity 1 45 0 4 593 182 91 0 29 chr3LHet 1167829 1167863 -1387628 + (TGG)n Simple_repeat Simple_repeat 2 34 0 4 593 515 18 0 0 chr3LHet 1167936 1167993 -1387498 - Gypsy6A_LTR LTR Gypsy -118 302 246 4 593 43190 1 0 0 chr3LHet 1168009 1172701 -1382790 - FW_DM LINE Jockey 0 4692 1 4 593 1520 96 64 44 chr3LHet 1172713 1172964 -1382527 - Gypsy6A_LTR LTR Gypsy -164 256 1 4 593 2357 97 112 157 chr3LHet 1172964 1173510 -1381981 - CIRCE LINE Composite -2185 4171 3651 4 593 488 36 0 0 chr3LHet 1173505 1173561 -1381930 - G3_DM LINE Jockey -4360 245 190 4 593 6597 175 109 91 chr3LHet 1173710 1176066 -1379425 - DOC4_DM LINE Jockey 0 4793 627 4 593 352 114 21 4 chr3LHet 1176084 1176147 -1379344 - DNAREP1_DM LINE Penelope -101 493 448 4 593 4478 255 54 33 chr3LHet 1176165 1179056 -1376435 + Gypsy8_I LTR Gypsy 435 3430 -3223 4 593 2342 109 34 34 chr3LHet 1179082 1179498 -1375993 + Gypsy8_I LTR Gypsy 3421 3836 -511 4 74 1462 68 50 110 chr3LHet 1179492 1179774 -1375717 + Gypsy8_I LTR Gypsy 4039 4303 -44 4 594 597 117 9 19 chr3LHet 1179761 1179866 -1375625 + Gypsy8_LTR LTR Gypsy 72 175 -129 4 594 905 85 0 0 chr3LHet 1180167 1180285 -1375206 - CIRCE LINE Composite -2102 4254 4137 4 594 352 148 0 0 chr3LHet 1180330 1180384 -1375107 - CIRCE LINE Composite -2219 4137 4084 4 594 494 311 49 11 chr3LHet 1180398 1180665 -1374826 + OSVALDO_I LTR Gypsy 2447 2723 -3930 4 594 2602 91 0 46 chr3LHet 1180667 1181060 -1374431 + Gypsy8_I LTR Gypsy 1074 1448 -2899 4 594 25 65 0 0 chr3LHet 1181758 1181804 -1373687 + AT_rich Low_complexity Low_complexity 1 46 0 4 594 265 299 0 33 chr3LHet 1181905 1181995 -1373496 + DMCR1A LINE CR1 3832 3918 -552 4 594 616 111 11 0 chr3LHet 1182078 1182168 -1373323 + DM176_LTR LTR Gypsy 130 220 -287 4 594 349 162 27 0 chr3LHet 1182165 1182239 -1373252 + DM297_LTR LTR Gypsy 190 265 -149 4 594 1498 39 0 6 chr3LHet 1182245 1182425 -1373066 + PROTOP_B DNA P 8 186 -967 4 594 45 0 0 0 chr3LHet 1182829 1182874 -1372617 + AT_rich Low_complexity Low_complexity 1 45 0 4 594 24 0 0 0 chr3LHet 1183280 1183304 -1372187 + AT_rich Low_complexity Low_complexity 1 24 0 4 594 439 330 34 39 chr3LHet 1183484 1184012 -1371479 + Gypsy3_I LTR Gypsy 846 1784 -5228 4 594 23 0 0 0 chr3LHet 1184807 1184830 -1370661 + AT_rich Low_complexity Low_complexity 1 23 0 4 594 1973 153 6 8 chr3LHet 1184917 1185324 -1370167 + Gypsy8_I LTR Gypsy 1503 1831 -2516 4 594 1610 37 11 0 chr3LHet 1185325 1185516 -1369975 + Gypsy6A_LTR LTR Gypsy 212 404 -16 4 594 416 181 12 0 chr3LHet 1185808 1185891 -1369600 + Gypsy_LTR LTR Gypsy 1 84 -398 4 594 8472 28 40 48 chr3LHet 1185891 1187005 -1368486 - PROTOP_A DNA P 0 1105 1 4 594 5992 18 0 0 chr3LHet 1187035 1187714 -1367777 - PROTOP DNA P 0 4480 3802 4 594 6558 30 22 6 chr3LHet 1187709 1188519 -1366972 - PROTOP DNA P -3657 823 1 4 594 1304 199 10 24 chr3LHet 1188521 1188814 -1366677 + Gypsy_LTR LTR Gypsy 102 390 -92 4 594 497 224 109 23 chr3LHet 1188956 1189130 -1366361 - I_DM LINE I -3292 2939 2751 4 594 230 131 48 32 chr3LHet 1189117 1189178 -1366313 - I_DM LINE I -4246 1985 1924 4 594 1631 145 75 10 chr3LHet 1189178 1189471 -1366020 - DNAREP1_DM LINE Penelope 0 594 283 4 594 2030 146 255 18 chr3LHet 1190325 1190713 -1364778 + DMCR1A LINE CR1 2930 3409 -1061 4 594 697 163 170 0 chr3LHet 1190738 1190885 -1364606 + DMCR1A LINE CR1 4284 4455 -15 4 594 364 300 0 0 chr3LHet 1191687 1191777 -1363714 + Gypsy8_I LTR Gypsy 1035 1124 -3223 4 594 422 353 75 0 chr3LHet 1191828 1192069 -1363422 + OSVALDO_I LTR Gypsy 3608 3866 -2787 4 594 309 265 57 29 chr3LHet 1192467 1192572 -1362919 - MDG1_I LTR Gypsy -6322 274 184 4 594 531 162 442 25 chr3LHet 1192573 1192766 -1362725 - DNAREP1_DM LINE Penelope -106 488 228 4 594 294 208 110 40 chr3LHet 1192941 1193041 -1362450 - Gypsy2_LTR LTR Gypsy -150 203 97 4 594 9902 222 43 36 chr3LHet 1193140 1195618 -1359873 - Gypsy2_I LTR Gypsy -250 5885 3434 4 594 5895 287 39 19 chr3LHet 1195631 1197678 -1357813 - Gypsy6_I LTR Gypsy -3568 3444 1357 4 594 817 171 148 121 chr3LHet 1197743 1198108 -1357383 - TIRANT_LTR LTR Gypsy -42 375 1 4 594 34635 190 22 8 chr3LHet 1198108 1204308 -1351183 - TIRANT_I LTR Gypsy 0 7692 1401 4 594 204 270 13 13 chr3LHet 1204366 1204441 -1351050 + (TA)n Simple_repeat Simple_repeat 1 75 0 4 594 22 0 0 0 chr3LHet 1204514 1204536 -1350955 + AT_rich Low_complexity Low_complexity 1 22 0 4 594 876 280 36 43 chr3LHet 1204625 1204927 -1350564 - TIRANT_I LTR Gypsy -6342 1350 1051 4 594 251 135 143 86 chr3LHet 1204968 1205073 -1350418 - TIRANT_I LTR Gypsy -6748 944 834 4 594 319 343 73 32 chr3LHet 1205191 1205507 -1349984 - TIRANT_I LTR Gypsy -6748 944 616 4 594 2421 22 0 0 chr3LHet 1205530 1205806 -1349685 - DOC2_DM LINE Jockey -34 4759 4484 4 594 1490 22 54 16 chr3LHet 1205813 1205997 -1349494 - DOC2_DM LINE Jockey -982 3811 3621 4 594 7762 11 16 0 chr3LHet 1205985 1206863 -1348628 - DOC2_DM LINE Jockey -2223 2570 1679 4 594 318 0 0 0 chr3LHet 1206862 1206899 -1348592 - DOC2_DM LINE Jockey -3816 977 941 4 594 406 225 103 82 chr3LHet 1206892 1207076 -1348415 - TIRANT_I LTR Gypsy -7504 188 1 4 594 273 224 81 75 chr3LHet 1207147 1207321 -1348170 - TIRANT_LTR LTR Gypsy -42 375 201 4 594 729 301 31 31 chr3LHet 1207400 1207654 -1347837 - Gypsy2_I LTR Gypsy -4838 1297 1044 4 594 711 187 118 89 chr3LHet 1207691 1207961 -1347530 - Gypsy2_I LTR Gypsy -5566 569 292 4 594 806 156 85 53 chr3LHet 1208186 1208375 -1347116 - Gypsy2_LTR LTR Gypsy -150 203 9 4 594 4604 59 48 8 chr3LHet 1208705 1209304 -1346187 + Baggins1 LINE LOA 3987 4609 -844 4 594 5177 33 85 0 chr3LHet 1209302 1209940 -1345551 + Baggins1 LINE LOA 4752 5443 -10 4 594 254 38 57 19 chr3LHet 1209940 1209993 -1345498 + (TAA)n Simple_repeat Simple_repeat 1 55 0 4 594 24 32 0 0 chr3LHet 1210920 1210951 -1344540 + AT_rich Low_complexity Low_complexity 1 31 0 4 594 482 297 45 21 chr3LHet 1210951 1211214 -1344277 - Gypsy4_I LTR Gypsy -2921 3500 3232 4 594 470 216 39 31 chr3LHet 1211207 1211336 -1344155 - Gypsy4_I LTR Gypsy -3628 2660 2531 4 594 7600 43 3 0 chr3LHet 1211336 1212232 -1343259 - FW2_DM LINE Jockey -46 3915 3017 4 594 1029 42 0 0 chr3LHet 1212232 1212351 -1343140 - FW2_DM LINE Jockey -2584 1377 1259 4 594 3730 28 5 0 chr3LHet 1212351 1212777 -1342714 - ROO_LTR LTR Pao 0 428 1 4 594 42806 22 35 1 chr3LHet 1212777 1219385 -1336106 - ROO_I LTR Pao 0 8256 1426 4 594 3637 41 121 63 chr3LHet 1219379 1219950 -1335541 - ROO_I LTR Pao -7096 1160 557 4 594 2277 52 15 52 chr3LHet 1219933 1220259 -1335232 - ROO_I LTR Pao -7942 314 1 4 594 3498 29 39 0 chr3LHet 1220259 1220671 -1334820 - ROO_LTR LTR Pao 0 428 1 4 594 4961 29 92 0 chr3LHet 1220671 1221283 -1334208 - FW2_DM LINE Jockey -2698 1263 596 4 594 920 57 167 0 chr3LHet 1221283 1221518 -1333973 - FW2_DM LINE Jockey -3560 401 128 4 594 25 65 0 0 chr3LHet 1221712 1221758 -1333733 + AT_rich Low_complexity Low_complexity 1 46 0 4 594 282 328 11 20 chr3LHet 1222867 1223103 -1332388 - Gypsy4_I LTR Gypsy -5289 999 846 4 594 24 53 0 0 chr3LHet 1223475 1223513 -1331978 + AT_rich Low_complexity Low_complexity 1 38 0 4 594 43 26 0 50 chr3LHet 1223997 1224077 -1331414 + AT_rich Low_complexity Low_complexity 1 76 0 4 594 1316 103 0 5 chr3LHet 1224627 1224813 -1330678 - PROTOP_B DNA P -968 185 1 4 594 384 176 39 23 chr3LHet 1225405 1225533 -1329958 + PROTOP DNA P 1696 1825 -2655 4 594 33 56 0 0 chr3LHet 1225613 1225667 -1329824 + AT_rich Low_complexity Low_complexity 1 54 0 4 594 324 68 186 0 chr3LHet 1225667 1225726 -1329765 + DNAREP1_DM LINE Penelope 233 302 -292 4 594 1581 155 7 3 chr3LHet 1227064 1227356 -1328135 + DNAREP1_DM LINE Penelope 1 293 -301 4 594 1582 139 92 75 chr3LHet 1227379 1228074 -1327417 + DNAREP1_DM LINE Penelope 1 592 -2 4 594 2619 156 127 32 chr3LHet 1228080 1228696 -1326795 + Mariner2_DM DNA Tc1 2 675 -237 4 594 22 0 0 0 chr3LHet 1228725 1228747 -1326744 + AT_rich Low_complexity Low_complexity 1 22 0 4 594 431 191 35 97 chr3LHet 1229052 1229197 -1326294 + Stalker2_I LTR Gypsy 3920 4055 -3347 4 594 239 248 257 0 chr3LHet 1229190 1229295 -1326196 + DM412 LTR Gypsy 4155 4286 -2611 4 594 650 280 164 28 chr3LHet 1230187 1230474 -1325017 - DIVER2_I LTR Pao -355 3792 3467 4 594 1217 172 108 68 chr3LHet 1230513 1230838 -1324653 + G7_DM LINE Jockey 498 835 -357 4 594 3294 41 0 3 chr3LHet 1230838 1231230 -1324261 - Gypsy6A_LTR LTR Gypsy 0 420 30 4 594 227 54 0 51 chr3LHet 1231230 1231269 -1324222 + G7_DM LINE Jockey 932 968 -224 4 594 1299 144 45 0 chr3LHet 1231269 1231491 -1324000 - HOBO DNA hAT 0 3016 2785 4 594 868 67 0 49 chr3LHet 1231495 1231637 -1323854 - PROTOP_B DNA P -706 447 313 4 594 233 29 0 29 chr3LHet 1231640 1231675 -1323816 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 594 832 49 0 47 chr3LHet 1231685 1231813 -1323678 - PROTOP_B DNA P -719 434 313 4 594 233 29 0 29 chr3LHet 1231816 1231851 -1323640 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 594 339 43 0 0 chr3LHet 1231852 1231898 -1323593 + PROTOP_B DNA P 313 358 -795 4 594 199 0 65 0 chr3LHet 1231898 1231929 -1323562 + (TA)n Simple_repeat Simple_repeat 1 33 0 4 594 809 87 0 23 chr3LHet 1231942 1232072 -1323419 - PROTOP_B DNA P -714 439 313 4 594 412 32 0 87 chr3LHet 1232106 1232175 -1323316 + PROTOP_B DNA P 317 379 -774 4 594 311 60 78 29 chr3LHet 1232178 1232281 -1323210 + (TATAA)n Simple_repeat Simple_repeat 5 112 0 4 594 684 126 413 0 chr3LHet 1232282 1232437 -1323054 - PROTOP_B DNA P -918 235 17 4 594 1577 121 29 123 chr3LHet 1232438 1232787 -1322704 - HOBO DNA hAT -2700 316 1 4 594 1134 132 17 52 chr3LHet 1232787 1233017 -1322474 + G7_DM LINE Jockey 961 1182 -10 4 594 294 290 0 0 chr3LHet 1233034 1233103 -1322388 - DIVER2_I LTR Pao -761 3386 3318 4 594 25 0 0 0 chr3LHet 1233656 1233681 -1321810 + AT_rich Low_complexity Low_complexity 1 25 0 4 594 34 42 0 0 chr3LHet 1233917 1233965 -1321526 + AT_rich Low_complexity Low_complexity 1 48 0 4 594 37 39 0 0 chr3LHet 1234131 1234182 -1321309 + AT_rich Low_complexity Low_complexity 1 51 0 4 594 774 342 8 51 chr3LHet 1234304 1234794 -1320697 + HMSBEAGLE_I LTR Gypsy 1729 2197 -4332 4 594 351 261 0 11 chr3LHet 1235283 1235372 -1320119 + HMSBEAGLE_I LTR Gypsy 2646 2733 -3796 4 594 5443 283 72 14 chr3LHet 1235637 1237729 -1317762 + HMSBEAGLE_I LTR Gypsy 3129 5341 -1188 4 594 3616 17 0 0 chr3LHet 1237746 1238153 -1317338 + Gypsy6_LTR LTR Gypsy 1 407 0 4 594 267 0 22 44 chr3LHet 1238153 1238198 -1317293 + (TA)n Simple_repeat Simple_repeat 1 44 0 4 594 4500 33 19 3 chr3LHet 1238198 1238768 -1316723 + IDEFIX_LTR LTR Gypsy 1 579 -15 4 594 2315 18 3 36 chr3LHet 1238770 1239085 -1316406 + ROVER-LTR_DM LTR Gypsy 1 367 0 4 594 10882 4 0 72 chr3LHet 1239085 1240539 -1314952 + ROVER-I_DM LTR Gypsy 1 1349 -5235 4 594 30867 55 4 4 chr3LHet 1240538 1245419 -1310072 + ROVER-I_DM LTR Gypsy 1775 6584 0 4 594 2253 28 3 39 chr3LHet 1245419 1245734 -1309757 + ROVER-LTR_DM LTR Gypsy 1 367 0 4 594 24 0 0 0 chr3LHet 1245950 1245974 -1309517 + AT_rich Low_complexity Low_complexity 1 24 0 4 594 5776 32 1 1 chr3LHet 1246287 1247001 -1308490 + IDEFIX_I LTR Gypsy 1 714 -4914 4 594 34507 46 9 2 chr3LHet 1247002 1251408 -1304083 + IDEFIX_I LTR Gypsy 1192 5628 0 4 594 4655 39 5 2 chr3LHet 1251408 1252000 -1303491 + IDEFIX_LTR LTR Gypsy 1 594 0 4 594 32 0 0 0 chr3LHet 1252000 1252032 -1303459 + AT_rich Low_complexity Low_complexity 1 32 0 4 594 329 239 0 0 chr3LHet 1253461 1253528 -1301963 + HMSBEAGLE_I LTR Gypsy 6463 6529 0 4 594 1594 136 73 7 chr3LHet 1254490 1254793 -1300698 + DNAREP1_DM LINE Penelope 10 332 -262 4 594 1202 113 233 24 chr3LHet 1255622 1255875 -1299616 - DMCR1A LINE CR1 -3542 928 623 4 594 1581 144 144 123 chr3LHet 1255959 1256481 -1299010 - DNAREP1_DM LINE Penelope -60 534 2 4 594 285 73 0 0 chr3LHet 1256476 1256517 -1298974 - DNAREP1_DM LINE Penelope -345 249 209 4 594 29 70 0 0 chr3LHet 1257170 1257227 -1298264 + AT_rich Low_complexity Low_complexity 1 57 0 4 594 6399 30 21 6 chr3LHet 1257242 1258053 -1297438 + PROTOP DNA P 1 823 -3657 4 594 5793 19 0 0 chr3LHet 1258048 1258727 -1296764 + PROTOP DNA P 3802 4480 0 4 594 341 143 16 0 chr3LHet 1258735 1258798 -1296693 + DNAREP1_DM LINE Penelope 531 594 0 4 594 541 195 90 39 chr3LHet 1259312 1259467 -1296024 + CIRCE LINE Composite 4138 4300 -2056 4 594 25 51 0 0 chr3LHet 1259473 1259512 -1295979 + AT_rich Low_complexity Low_complexity 1 39 0 4 594 3870 65 48 6 chr3LHet 1259526 1260049 -1295442 - G5A_DM LINE Jockey -24 2817 2273 4 594 267 157 20 0 chr3LHet 1260057 1260108 -1295383 + CIRCE LINE Composite 4292 4343 -2013 4 594 1088 207 36 22 chr3LHet 1260220 1260496 -1294995 - Gypsy6A_LTR LTR Gypsy -29 391 112 4 594 29 94 0 0 chr3LHet 1261056 1261141 -1294350 + AT_rich Low_complexity Low_complexity 1 85 0 4 594 6235 315 45 24 chr3LHet 1261640 1264588 -1290903 + Gypsy4_I LTR Gypsy 674 3683 -2605 4 594 1648 299 33 8 chr3LHet 1264657 1265285 -1290206 + Gypsy4_I LTR Gypsy 4101 4744 -1544 4 594 497 289 56 21 chr3LHet 1265533 1265819 -1289672 + Gypsy4_I LTR Gypsy 5103 5398 -890 4 594 3158 55 8 10 chr3LHet 1265840 1266259 -1289232 - STALKER4_LTR LTR Gypsy -23 379 1 4 594 275 75 25 0 chr3LHet 1266841 1266881 -1288610 - Gypsy6A_LTR LTR Gypsy -379 41 1 4 594 627 330 61 70 chr3LHet 1266910 1267513 -1287978 - Gypsy3_I LTR Gypsy -1 6176 5579 4 594 810 25 271 0 chr3LHet 1267537 1267655 -1287836 - DMCR1A LINE CR1 -2100 2370 2221 4 594 1223 102 6 0 chr3LHet 1267653 1267829 -1287662 - DMCR1A LINE CR1 -2631 1839 1663 4 594 2060 68 11 7 chr3LHet 1267821 1268102 -1287389 - DMCR1A LINE CR1 -3100 1370 1089 4 594 2238 130 100 18 chr3LHet 1268371 1268889 -1286602 - DNAREP1_DM LINE Penelope -29 565 89 4 594 290 335 17 17 chr3LHet 1268947 1269126 -1286365 + DMRT1C LINE R1 36 214 -5229 4 594 280 350 34 29 chr3LHet 1269153 1269359 -1286132 + DMRT1C LINE R1 40 246 -5197 4 594 268 270 137 7 chr3LHet 1269412 1269565 -1285926 + DMRT1C LINE R1 375 547 -4896 4 594 464 256 104 8 chr3LHet 1269836 1270076 -1285415 + M4DM DNA Transib 910 1172 -263 4 594 394 91 0 0 chr3LHet 1270815 1270870 -1284621 + DNAREP1_DM LINE Penelope 540 594 0 4 594 454 153 319 0 chr3LHet 1270866 1271010 -1284481 + DMRT1C LINE R1 791 980 -4463 4 594 471 153 0 12 chr3LHet 1271008 1271094 -1284397 + DMRT1C LINE R1 1800 1884 -3559 4 594 1982 124 91 0 chr3LHet 1271082 1271412 -1284079 + DMRT1C LINE R1 2206 2565 -2878 4 594 741 127 148 0 chr3LHet 1271460 1271602 -1283889 + DMRT1C LINE R1 2794 2956 -2487 4 594 225 73 0 211 chr3LHet 1271707 1271759 -1283732 + Gypsy8_LTR LTR Gypsy 232 272 -32 4 594 281 297 66 18 chr3LHet 1271875 1272101 -1283390 - QUASIMODO_I LTR Gypsy 0 6060 5824 4 594 3115 280 37 18 chr3LHet 1272129 1273505 -1281986 - QUASIMODO_I LTR Gypsy -306 5754 4353 4 594 4301 251 24 12 chr3LHet 1273533 1274891 -1280600 - QUASIMODO_I LTR Gypsy -1824 4236 2862 4 594 2997 256 17 18 chr3LHet 1274890 1276020 -1279471 - QUASIMODO_I LTR Gypsy -3378 2682 1512 4 594 9304 57 15 5 chr3LHet 1276046 1277327 -1278164 + I_DM LINE I 100 1393 -4838 4 594 1681 25 0 24 chr3LHet 1277329 1277537 -1277954 + FROGGER_LTR LTR Copia 1 203 0 4 594 1122 37 0 0 chr3LHet 1277537 1277673 -1277818 + FROGGER_I LTR Copia 1 136 -1941 4 594 180 0 0 0 chr3LHet 1277678 1277698 -1277793 + (A)n Simple_repeat Simple_repeat 1 20 0 4 594 228 321 0 28 chr3LHet 1278125 1278234 -1277257 + Copia2_I LTR Copia 567 672 -3490 4 594 3911 25 4 4 chr3LHet 1279110 1279592 -1275899 - Gypsy_LTR LTR Gypsy 0 482 1 4 594 56394 7 1 0 chr3LHet 1279592 1286095 -1269396 - Gypsy_I LTR Gypsy 0 6507 1 4 594 3911 25 4 4 chr3LHet 1286093 1286575 -1268916 - Gypsy_LTR LTR Gypsy 0 482 1 4 594 14489 25 1 13 chr3LHet 1287141 1288951 -1266540 + FROGGER_I LTR Copia 289 2077 0 4 594 1698 15 0 0 chr3LHet 1288951 1289154 -1266337 + FROGGER_LTR LTR Copia 1 203 0 4 594 4150 70 32 27 chr3LHet 1289154 1289847 -1265644 + I_DM LINE I 1389 2084 -4147 4 594 253 0 0 0 chr3LHet 1289857 1289892 -1265599 + I_DM LINE I 2143 2177 -4054 4 594 17371 68 11 19 chr3LHet 1289898 1292505 -1262986 + I_DM LINE I 2869 5456 -775 4 594 231 254 0 0 chr3LHet 1292530 1292601 -1262890 - QUASIMODO_I LTR Gypsy -4559 1501 1431 4 594 1425 48 0 0 chr3LHet 1292624 1292810 -1262681 + LOOPER1_DM DNA PiggyBac 1 186 -1695 4 594 1324 52 0 0 chr3LHet 1293278 1293469 -1262022 + LOOPER1_DM DNA PiggyBac 186 376 -1505 4 594 3888 36 147 13 chr3LHet 1293468 1294163 -1261328 + LOOPER1_DM DNA PiggyBac 720 1507 -374 4 594 2338 53 40 20 chr3LHet 1294768 1295115 -1260376 + LOOPER1_DM DNA PiggyBac 1527 1880 -1 4 594 282 273 35 35 chr3LHet 1295145 1295316 -1260175 - QUASIMODO_I LTR Gypsy -4686 1374 1204 4 594 754 316 41 36 chr3LHet 1295479 1296090 -1259401 - QUASIMODO_I LTR Gypsy -5068 992 379 4 594 28 0 0 0 chr3LHet 1296863 1296891 -1258600 + AT_rich Low_complexity Low_complexity 1 28 0 4 594 237 247 36 24 chr3LHet 1296971 1297054 -1258437 + TV1I LTR Gypsy 3678 3761 -2202 4 594 1149 39 123 0 chr3LHet 1297085 1297239 -1258252 - Baggins1 LINE LOA 0 5453 5281 4 594 353 253 22 17 chr3LHet 1297260 1297441 -1258050 + IDEFIX_I LTR Gypsy 3576 3757 -1871 4 594 192 77 0 0 chr3LHet 1297450 1297476 -1258015 + (TAA)n Simple_repeat Simple_repeat 2 27 0 4 594 3237 39 29 0 chr3LHet 1297512 1297928 -1257563 - ROO_LTR LTR Pao 0 428 1 4 594 6194 25 0 1 chr3LHet 1297928 1298714 -1256777 - ROO_I LTR Pao 0 8256 7472 4 594 47601 18 7 5 chr3LHet 1298711 1304615 -1250876 - ROO_I LTR Pao -2336 5920 1 4 594 3261 39 29 0 chr3LHet 1304615 1305031 -1250460 - ROO_LTR LTR Pao 0 428 1 4 594 290 256 0 0 chr3LHet 1305067 1305149 -1250342 + QUASIMODO_I LTR Gypsy 4250 4331 -1729 4 594 823 201 8 38 chr3LHet 1305224 1305462 -1250029 + DNAREP1_DM LINE Penelope 72 302 -292 4 594 574 110 37 108 chr3LHet 1305437 1305646 -1249845 + DNAREP1_DM LINE Penelope 117 312 -282 4 594 759 161 30 24 chr3LHet 1305646 1305811 -1249680 + DNAREP1_DM LINE Penelope 1 166 -428 4 594 685 95 335 23 chr3LHet 1305896 1306078 -1249413 + DNAREP1_DM LINE Penelope 356 594 0 4 594 798 232 23 27 chr3LHet 1306081 1306302 -1249189 + DNAREP1_DM LINE Penelope 270 489 -105 4 594 313 222 43 43 chr3LHet 1306452 1306546 -1248945 + R1_DM LINE R1 4596 4689 -667 4 594 414 301 43 0 chr3LHet 1307440 1307603 -1247888 - BURDOCK_I LTR Gypsy -1261 4599 4430 4 594 2958 91 158 0 chr3LHet 1307608 1308217 -1247274 + PROTOP DNA P 1 707 -3773 4 594 283 152 0 57 chr3LHet 1308218 1308288 -1247203 + PROTOP DNA P 1009 1074 -3406 4 594 3271 74 49 25 chr3LHet 1308294 1308877 -1246614 + PROTOP_B DNA P 669 1153 0 4 594 26 30 0 0 chr3LHet 1309225 1309258 -1246233 + AT_rich Low_complexity Low_complexity 1 33 0 4 594 692 303 22 28 chr3LHet 1309791 1310265 -1245226 - Gypsy4_I LTR Gypsy -470 5818 5411 4 74 4379 45 45 0 chr3LHet 1310277 1310860 -1244631 + DOC3_DM LINE Jockey 2677 3285 -1455 4 595 8403 42 87 2 chr3LHet 1310845 1312000 -1243491 + DOC3_DM LINE Jockey 3395 4648 -92 4 595 579 170 692 29 chr3LHet 1312053 1312397 -1243094 + DMCR1A LINE CR1 110 682 -3788 4 595 1405 169 0 0 chr3LHet 1312417 1312660 -1242831 + DMCR1A LINE CR1 1659 1901 -2569 4 595 687 183 320 4 chr3LHet 1312666 1312913 -1242578 + DMCR1A LINE CR1 2135 2459 -2011 4 595 232 39 569 0 chr3LHet 1312914 1312965 -1242526 + DMCR1A LINE CR1 809 888 -3582 4 595 428 95 0 0 chr3LHet 1312980 1313043 -1242448 + DMCR1A LINE CR1 1275 1337 -3133 4 595 895 76 8 0 chr3LHet 1313040 1313172 -1242319 + DMCR1A LINE CR1 1707 1839 -2631 4 595 3794 51 0 0 chr3LHet 1313170 1313662 -1241829 + DMCR1A LINE CR1 2221 2712 -1758 4 595 1383 109 124 3 chr3LHet 1313857 1314197 -1241294 + DNAREP1_DM LINE Penelope 1 381 -213 4 595 2033 95 72 6 chr3LHet 1314253 1314602 -1240889 - STALKER4_LTR LTR Gypsy -29 373 2 4 595 1292 103 69 0 chr3LHet 1314602 1314803 -1240688 + DNAREP1_DM LINE Penelope 380 594 0 4 595 1135 138 233 24 chr3LHet 1314801 1315167 -1240324 + DNAREP1_DM LINE Penelope 2 444 -150 4 595 353 152 245 21 chr3LHet 1316258 1316352 -1239139 + DNAREP1_DM LINE Penelope 2 116 -478 4 595 490 343 22 9 chr3LHet 1316681 1317002 -1238489 - DIVER2_I LTR Pao -104 4043 3719 4 595 305 322 108 25 chr3LHet 1317198 1317402 -1238089 - DIVER2_I LTR Pao -902 3245 3025 4 595 547 345 26 21 chr3LHet 1318754 1319177 -1236314 - DIVER2_I LTR Pao -1758 2389 1965 4 595 1835 119 158 49 chr3LHet 1319546 1319951 -1235540 - G3_DM LINE Jockey -4026 579 131 4 595 3591 244 121 25 chr3LHet 1320046 1322178 -1233313 - DOC4_DM LINE Jockey -637 4103 2081 4 595 852 165 33 0 chr3LHet 1322193 1322395 -1233096 - DOC4_DM LINE Jockey -914 1877 1735 4 595 295 366 19 12 chr3LHet 1322798 1323055 -1232436 - DIVER2_I LTR Pao -170 3977 3719 4 595 264 342 25 25 chr3LHet 1323296 1323455 -1232036 - DIVER2_I LTR Pao -964 3183 3025 4 595 582 345 77 31 chr3LHet 1324811 1325574 -1229917 - DIVER2_I LTR Pao -1758 2389 1592 4 595 5856 55 148 8 chr3LHet 1325607 1326531 -1228960 + DMCR1A LINE CR1 1590 2643 -1827 4 595 3933 75 23 2 chr3LHet 1326532 1327107 -1228384 + DMCR1A LINE CR1 2875 3461 -1009 4 595 12384 47 24 8 chr3LHet 1327107 1328814 -1226677 + S2_DM DNA Tc1 1 1735 0 4 595 1350 56 94 0 chr3LHet 1328814 1329154 -1226337 + DMCR1A LINE CR1 3460 3831 -639 4 595 2317 64 128 18 chr3LHet 1329140 1329524 -1225967 + DMCR1A LINE CR1 4043 4468 -2 4 595 314 130 0 42 chr3LHet 1329814 1329886 -1225605 - DOC LINE Jockey -33 4692 4624 4 595 222 100 15 91 chr3LHet 1330694 1330760 -1224731 + (TATAA)n Simple_repeat Simple_repeat 4 64 0 4 595 28 48 0 0 chr3LHet 1331030 1331072 -1224419 + AT_rich Low_complexity Low_complexity 1 42 0 4 595 230 119 0 0 chr3LHet 1331101 1331143 -1224348 - Transib5 DNA Transib -2709 292 251 4 595 3374 205 152 34 chr3LHet 1331392 1332797 -1222694 - DOC4_DM LINE Jockey -767 3973 2081 4 595 258 222 56 0 chr3LHet 1332954 1333008 -1222483 - DOC2_DM LINE Jockey -2207 2586 2530 4 595 1031 204 85 0 chr3LHet 1332995 1333351 -1222140 - DOC4_DM LINE Jockey -2357 2436 1871 4 595 4481 63 74 9 chr3LHet 1333352 1333997 -1221494 - DOC4_DM LINE Jockey -1175 1616 930 4 595 2270 74 85 40 chr3LHet 1334030 1334610 -1220881 - DOC4_DM LINE Jockey -1981 810 1 4 595 22 0 0 0 chr3LHet 1335299 1335321 -1220170 + AT_rich Low_complexity Low_complexity 1 22 0 4 595 474 35 0 0 chr3LHet 1335411 1335468 -1220023 - G3_DM LINE Jockey -4548 57 1 4 595 997 207 88 4 chr3LHet 1335706 1335944 -1219547 - Gypsy2_LTR LTR Gypsy -86 267 10 4 595 3154 100 23 19 chr3LHet 1335931 1336408 -1219083 - Gypsy2_I LTR Gypsy -523 5612 5134 4 595 440 139 12 25 chr3LHet 1336399 1336480 -1219011 - Gypsy2_I LTR Gypsy -1419 4716 4637 4 595 361 82 0 0 chr3LHet 1336496 1336545 -1218946 - Gypsy2_I LTR Gypsy -1797 4338 4290 4 595 961 81 0 0 chr3LHet 1336556 1336680 -1218811 - Gypsy2_I LTR Gypsy -2072 4063 3940 4 595 367 23 0 0 chr3LHet 1336920 1336964 -1218527 + G4_DM LINE Jockey 1 44 -3812 4 595 13848 41 19 1 chr3LHet 1336962 1338691 -1216800 + G4_DM LINE Jockey 2097 3856 0 4 595 11822 146 29 2 chr3LHet 1338704 1340931 -1214560 - Gypsy2_I LTR Gypsy -2785 4737 1713 4 595 12395 42 11 1 chr3LHet 1340930 1342611 -1212880 + DMCR1A LINE CR1 2742 4470 0 4 595 501 189 0 0 chr3LHet 1342826 1342916 -1212575 - Gypsy2_I LTR Gypsy -5815 320 231 4 595 337 107 107 0 chr3LHet 1342952 1343008 -1212483 - Gypsy2_I LTR Gypsy -6073 62 1 4 595 283 136 17 17 chr3LHet 1343160 1343220 -1212271 - Gypsy2_LTR LTR Gypsy -153 200 141 4 595 341 94 0 0 chr3LHet 1343530 1343583 -1211908 + DNAREP1_DM LINE Penelope 122 174 -420 4 595 685 186 78 10 chr3LHet 1343609 1343815 -1211676 + DNAREP1_DM LINE Penelope 137 356 -238 4 595 236 154 0 0 chr3LHet 1343818 1343857 -1211634 + DNAREP1_DM LINE Penelope 510 548 -46 4 595 21 0 0 0 chr3LHet 1343955 1343976 -1211515 + AT_rich Low_complexity Low_complexity 1 21 0 4 595 25 31 0 0 chr3LHet 1344354 1344386 -1211105 + AT_rich Low_complexity Low_complexity 1 32 0 4 595 353 127 0 0 chr3LHet 1344430 1344485 -1211006 - DNAREP1_DM LINE Penelope 0 594 540 4 595 2523 118 31 0 chr3LHet 1344492 1344875 -1210616 + Gypsy12A_LTR LTR Gypsy 1 395 -1885 4 595 477 91 0 13 chr3LHet 1344950 1345028 -1210463 - Gypsy12A_LTR LTR Gypsy -175 2105 2029 4 595 4432 295 46 37 chr3LHet 1345026 1347417 -1208074 - ROVER-I_DM LTR Gypsy -2658 3926 1515 4 595 646 96 21 0 chr3LHet 1347442 1347536 -1207955 + Gypsy12A_LTR LTR Gypsy 300 395 -1885 4 595 726 113 0 9 chr3LHet 1347611 1347727 -1207764 - Gypsy12A_LTR LTR Gypsy -175 2105 1991 4 595 371 153 0 53 chr3LHet 1347723 1347799 -1207692 + Gypsy12A_LTR LTR Gypsy 1960 2031 -249 4 595 1062 116 171 34 chr3LHet 1347795 1348000 -1207491 + Gypsy12A_LTR LTR Gypsy 420 652 -1628 4 595 1792 150 82 50 chr3LHet 1348045 1348507 -1206984 + Gypsy12A_LTR LTR Gypsy 759 1235 -1045 4 595 4335 160 199 2 chr3LHet 1348639 1349702 -1205789 + DMRT1B LINE R1 1693 2964 -2219 4 595 6480 119 99 0 chr3LHet 1349701 1350766 -1204725 + DMRT1B LINE R1 4011 5181 -2 4 595 660 196 74 70 chr3LHet 1351005 1351290 -1204201 - DNAREP1_DM LINE Penelope -287 307 22 4 595 32 98 0 0 chr3LHet 1351303 1351405 -1204086 + AT_rich Low_complexity Low_complexity 1 102 0 4 595 25 0 0 0 chr3LHet 1351488 1351513 -1203978 + AT_rich Low_complexity Low_complexity 1 25 0 4 595 25 0 0 0 chr3LHet 1351587 1351612 -1203879 + AT_rich Low_complexity Low_complexity 1 25 0 4 595 24 67 0 0 chr3LHet 1352662 1352707 -1202784 + AT_rich Low_complexity Low_complexity 1 45 0 4 595 1422 128 122 24 chr3LHet 1352873 1353161 -1202330 + DNAREP1_DM LINE Penelope 1 316 -278 4 595 449 111 14 0 chr3LHet 1353175 1353247 -1202244 + DNAREP1_DM LINE Penelope 254 326 -268 4 595 26 0 0 0 chr3LHet 1353791 1353817 -1201674 + AT_rich Low_complexity Low_complexity 1 26 0 4 595 423 235 115 46 chr3LHet 1354220 1354394 -1201097 + Stalker2_I LTR Gypsy 3869 4054 -3348 4 595 638 216 139 13 chr3LHet 1354408 1354638 -1200853 + DM412 LTR Gypsy 4206 4464 -2433 4 595 235 191 0 0 chr3LHet 1354663 1354710 -1200781 - DNAREP1_DM LINE Penelope -109 485 439 4 595 616 175 301 20 chr3LHet 1354973 1355222 -1200269 + DMCR1A LINE CR1 1241 1559 -2911 4 595 254 160 0 20 chr3LHet 1355917 1355968 -1199523 + Gypsy8_LTR LTR Gypsy 1 50 -254 4 595 294 156 46 15 chr3LHet 1356024 1356089 -1199402 + NINJA_LTR LTR Pao 116 182 -135 4 595 240 179 0 0 chr3LHet 1356361 1356400 -1199091 - Invader6_LTR LTR Gypsy -188 205 167 4 595 257 191 46 31 chr3LHet 1356572 1356637 -1198854 - Invader1_I LTR Gypsy 0 3186 3121 4 595 1083 271 145 32 chr3LHet 1357265 1357896 -1197595 - Invader6_I LTR Gypsy -2017 2082 1381 4 595 938 325 56 5 chr3LHet 1357930 1358356 -1197135 - Invader6_I LTR Gypsy -2904 1195 748 4 595 806 320 100 24 chr3LHet 1358445 1358986 -1196505 - Invader6_I LTR Gypsy -3479 620 39 4 595 1535 73 9 40 chr3LHet 1359358 1359585 -1195906 + PROTOP DNA P 1 221 -4259 4 595 666 116 50 8 chr3LHet 1360226 1360394 -1195097 + DNAREP1_DM LINE Penelope 135 332 -262 4 595 264 118 169 42 chr3LHet 1360447 1360518 -1194973 + DNAREP1_DM LINE Penelope 515 594 0 4 595 29 28 0 0 chr3LHet 1360893 1360929 -1194562 + AT_rich Low_complexity Low_complexity 1 36 0 4 595 1621 132 76 9 chr3LHet 1361081 1361499 -1193992 + DNAREP1_DM LINE Penelope 1 324 -270 4 595 235 132 19 19 chr3LHet 1361506 1361560 -1193931 + DNAREP1_DM LINE Penelope 239 292 -302 4 595 337 71 250 0 chr3LHet 1361571 1361627 -1193864 + DNAREP1_DM LINE Penelope 466 535 -59 4 595 1218 245 115 44 chr3LHet 1361625 1362103 -1193388 - Invader6_I LTR Gypsy -2111 1988 1477 4 595 6710 142 70 44 chr3LHet 1362139 1363400 -1192091 + DMRT1B LINE R1 3880 5173 -10 4 595 3649 57 92 8 chr3LHet 1363577 1364108 -1191383 + PROTOP DNA P 1 576 -3904 4 595 12335 29 18 8 chr3LHet 1364098 1365623 -1189868 + PROTOP DNA P 2215 3754 -726 4 595 2151 39 100 0 chr3LHet 1365638 1365919 -1189572 + PROTOP DNA P 4172 4480 0 4 595 3947 168 30 19 chr3LHet 1366008 1366821 -1188670 - Invader3_I LTR Gypsy -1 4887 4066 4 595 1249 158 188 6 chr3LHet 1366829 1367170 -1188321 - Invader3_I LTR Gypsy -1083 3805 3403 4 595 1791 133 0 3 chr3LHet 1367204 1367490 -1188001 - Invader3_I LTR Gypsy -2063 2825 2541 4 595 1115 225 162 33 chr3LHet 1367488 1367847 -1187644 - Invader3_I LTR Gypsy -2681 2207 1803 4 595 1277 127 22 7 chr3LHet 1367850 1368129 -1187362 - HELENA_RT LINE Jockey -2 1315 1172 4 595 373 66 98 0 chr3LHet 1368127 1368188 -1187303 - DNAREP1_DM LINE Penelope -478 116 50 4 595 1301 328 41 26 chr3LHet 1368964 1369702 -1185789 - DIVER2_I LTR Pao -80 4067 3319 4 595 365 322 108 25 chr3LHet 1369726 1369930 -1185561 - DIVER2_I LTR Pao -902 3245 3025 4 595 305 333 8 8 chr3LHet 1370348 1370475 -1185016 - DIVER2_I LTR Pao -2056 2091 1965 4 595 2793 115 59 41 chr3LHet 1370869 1371359 -1184132 - G3_DM LINE Jockey -4025 580 82 4 595 380 330 42 84 chr3LHet 1370938 1371414 -1184077 - DIVER2_I LTR Pao -2675 1472 1017 4 595 285 228 0 0 chr3LHet 1371640 1371697 -1183794 - TRAM_I LTR Pao -1540 1168 1112 4 595 625 108 0 11 chr3LHet 1372414 1372508 -1182983 - G3_DM LINE Jockey -4512 93 1 4 595 3359 46 1 14 chr3LHet 1372583 1373022 -1182469 - STALKER4_LTR LTR Gypsy -3 399 1 4 595 41901 9 4 1 chr3LHet 1373022 1377857 -1177634 - STALKER4_I LTR Gypsy 0 6530 1681 4 595 1999 129 45 21 chr3LHet 1377860 1378241 -1177250 - STALKER4_I LTR Gypsy -5577 953 564 4 595 2468 14 0 0 chr3LHet 1378255 1378537 -1176954 - STALKER4_LTR LTR Gypsy -120 282 1 4 595 31 82 0 0 chr3LHet 1379242 1379315 -1176176 + AT_rich Low_complexity Low_complexity 1 73 0 4 595 251 266 88 61 chr3LHet 1379533 1379681 -1175810 - DIVER2_I LTR Pao -707 3440 3289 4 595 237 0 0 0 chr3LHet 1380784 1380810 -1174681 - DNAREP1_DM LINE Penelope -1 593 568 4 595 5656 121 38 76 chr3LHet 1380810 1382009 -1173482 + PROTOP_B DNA P 1 1153 0 4 595 809 126 154 0 chr3LHet 1382009 1382152 -1173339 - DNAREP1_DM LINE Penelope -20 574 410 4 595 503 100 0 0 chr3LHet 1382146 1382216 -1173275 - DNAREP1_DM LINE Penelope -490 104 35 4 595 365 164 62 18 chr3LHet 1383159 1383271 -1172220 + DMCR1A LINE CR1 7 123 -4347 4 595 1339 121 172 8 chr3LHet 1383298 1383548 -1171943 + DMCR1A LINE CR1 451 741 -3729 4 595 595 158 0 82 chr3LHet 1383558 1383668 -1171823 + DMCR1A LINE CR1 929 1029 -3441 4 595 1231 110 166 114 chr3LHet 1383687 1383995 -1171496 + DMCR1A LINE CR1 1219 1542 -2928 4 595 26 88 0 0 chr3LHet 1384878 1384946 -1170545 + AT_rich Low_complexity Low_complexity 1 68 0 4 595 623 101 0 57 chr3LHet 1385397 1385502 -1169989 - DNAREP1_DM LINE Penelope 0 594 496 4 595 32 67 0 0 chr3LHet 1385686 1385746 -1169745 + AT_rich Low_complexity Low_complexity 1 60 0 4 595 1578 83 65 0 chr3LHet 1385771 1386001 -1169490 - DNAREP1_DM LINE Penelope -106 488 244 4 595 23 0 0 0 chr3LHet 1386001 1386024 -1169467 + AT_rich Low_complexity Low_complexity 1 23 0 4 595 892 310 106 63 chr3LHet 1386884 1388054 -1167437 + QUASIMODO_I LTR Gypsy 379 1589 -4374 4 595 2663 237 11 9 chr3LHet 1388068 1388716 -1166775 + IDEFIX_I LTR Gypsy 1641 2289 -3339 4 595 3312 252 24 8 chr3LHet 1388715 1389734 -1165757 + QUASIMODO_I LTR Gypsy 2862 3896 -2164 4 595 3306 47 2 12 chr3LHet 1389735 1390147 -1165344 + G5_DM LINE Jockey 4449 4856 0 4 595 1149 213 62 16 chr3LHet 1390142 1390447 -1165044 + TV1I LTR Gypsy 3782 4100 -1863 4 595 416 162 457 12 chr3LHet 1390515 1390689 -1164802 - DNAREP1_DM LINE Penelope -342 252 2 4 595 31 44 0 0 chr3LHet 1390906 1390951 -1164540 + AT_rich Low_complexity Low_complexity 1 45 0 4 595 1661 84 225 6 chr3LHet 1392278 1392614 -1162877 + DNAREP1_DM LINE Penelope 184 594 0 4 595 239 297 20 10 chr3LHet 1393082 1393184 -1162307 + Invader2_I LTR Gypsy 3052 3154 -1438 4 595 31 0 0 0 chr3LHet 1394224 1394255 -1161236 + AT_rich Low_complexity Low_complexity 1 31 0 4 595 2446 61 52 19 chr3LHet 1394675 1395486 -1160005 - PROTOP_B DNA P -225 928 1 4 595 226 191 60 0 chr3LHet 1395501 1395585 -1159906 + PROTOP DNA P 3528 3616 -864 4 595 969 84 0 6 chr3LHet 1395574 1395741 -1159750 + S_DM DNA Tc1 1531 1696 -40 4 595 33 73 0 0 chr3LHet 1395952 1396020 -1159471 + AT_rich Low_complexity Low_complexity 1 68 0 4 595 39 74 0 0 chr3LHet 1397223 1397304 -1158187 + AT_rich Low_complexity Low_complexity 1 81 0 4 595 3210 6 0 0 chr3LHet 1398499 1398845 -1156646 - Invader4_LTR LTR Gypsy 0 346 1 4 595 21575 4 16 0 chr3LHet 1398845 1401221 -1154270 - Invader4_I LTR Gypsy 0 2413 1 4 595 3210 6 0 0 chr3LHet 1401221 1401567 -1153924 - Invader4_LTR LTR Gypsy 0 346 1 4 595 1487 73 0 120 chr3LHet 1401567 1401817 -1153674 - DNAREP1_DM LINE Penelope -96 498 279 4 595 27 0 0 0 chr3LHet 1401861 1401888 -1153603 + AT_rich Low_complexity Low_complexity 1 27 0 4 595 279 246 0 0 chr3LHet 1402028 1402089 -1153402 + TRAM_I LTR Pao 1108 1168 -1540 4 595 382 314 62 104 chr3LHet 1402315 1402784 -1152707 + DIVER2_I LTR Pao 1017 1465 -2682 4 595 2844 117 59 41 chr3LHet 1402370 1402860 -1152631 + G3_DM LINE Jockey 82 580 -4025 4 595 9266 78 51 70 chr3LHet 1403222 1404715 -1150776 + CIRCE LINE Composite 3516 4980 -1376 4 595 324 353 95 24 chr3LHet 1404898 1405235 -1150256 + DIVER2_I LTR Pao 2029 2389 -1758 4 595 1227 87 5 31 chr3LHet 1406204 1406395 -1149096 - Gypsy8_LTR LTR Gypsy -47 257 72 4 595 1486 57 77 106 chr3LHet 1406382 1406655 -1148836 - Gypsy8_I LTR Gypsy -44 4303 4039 4 595 2237 113 67 30 chr3LHet 1406649 1407050 -1148441 - Gypsy8_I LTR Gypsy -511 3836 3421 4 595 3935 198 47 23 chr3LHet 1407076 1408427 -1147064 - Gypsy8_I LTR Gypsy -3510 3143 1036 4 595 3539 66 7 0 chr3LHet 1408484 1408938 -1146553 - Gypsy8_I LTR Gypsy -3311 1036 580 4 595 2714 50 3 38 chr3LHet 1408970 1409343 -1146148 - Gypsy8_I LTR Gypsy -3758 589 230 4 595 2340 50 248 12 chr3LHet 1410135 1410541 -1144950 + DOC4_DM LINE Jockey 968 1469 -1322 4 595 2495 301 121 25 chr3LHet 1410550 1412139 -1143352 + DOC3_DM LINE Jockey 2981 4721 -19 4 595 1228 108 83 5 chr3LHet 1412330 1412534 -1142957 + G3_DM LINE Jockey 82 301 -4304 4 595 901 67 0 0 chr3LHet 1412975 1413095 -1142396 - Gypsy8_I LTR Gypsy -4227 120 1 4 595 1140 123 17 9 chr3LHet 1413095 1413304 -1142187 - Gypsy8_LTR LTR Gypsy 0 304 6 4 595 870 70 77 83 chr3LHet 1413291 1413447 -1142044 - Gypsy8_I LTR Gypsy -20 4327 4173 4 595 1535 101 190 23 chr3LHet 1413451 1413762 -1141729 - Gypsy8_I LTR Gypsy -293 4054 3658 4 595 44 0 0 0 chr3LHet 1413989 1414033 -1141458 + AT_rich Low_complexity Low_complexity 1 44 0 4 595 1390 176 4 26 chr3LHet 1414136 1414405 -1141086 + DMRT1C LINE R1 6 268 -5175 4 595 1095 37 0 7 chr3LHet 1414409 1414546 -1140945 + DMRT1C LINE R1 1743 1878 -3565 4 595 2341 89 53 4 chr3LHet 1414544 1415120 -1140371 + DMRT1C LINE R1 2183 2485 -2958 4 595 847 133 35 108 chr3LHet 1415355 1415558 -1139933 - DMCR1A LINE CR1 -2839 1631 1444 4 595 2293 71 14 0 chr3LHet 1415553 1415850 -1139641 + DMRT1C LINE R1 2333 2633 -2810 4 595 14117 70 46 8 chr3LHet 1415912 1418537 -1136954 + DMRT1C LINE R1 2635 5359 -84 4 595 514 100 0 0 chr3LHet 1419318 1419388 -1136103 + DNAREP1_DM LINE Penelope 35 104 -490 4 595 843 119 154 0 chr3LHet 1419382 1419525 -1135966 + DNAREP1_DM LINE Penelope 410 574 -20 4 595 4138 57 7 11 chr3LHet 1419525 1420168 -1135323 - PROTOP_A DNA P 0 1105 520 4 595 1931 42 0 0 chr3LHet 1420187 1420425 -1135066 - PROTOP_A DNA P -561 544 307 4 595 19514 70 46 5 chr3LHet 1420508 1423125 -1132366 + DMRT1C LINE R1 2635 5359 -84 4 595 514 100 0 0 chr3LHet 1423906 1423976 -1131515 + DNAREP1_DM LINE Penelope 35 104 -490 4 595 843 119 154 0 chr3LHet 1423970 1424113 -1131378 + DNAREP1_DM LINE Penelope 410 574 -20 4 595 4118 60 11 10 chr3LHet 1424113 1424756 -1130735 - PROTOP_A DNA P 0 1105 520 4 595 3578 48 0 0 chr3LHet 1424775 1425214 -1130277 - PROTOP_A DNA P -561 544 106 4 595 2926 56 56 6 chr3LHet 1425230 1425796 -1129695 - PROTOP_B DNA P -181 972 336 4 595 1372 32 6 0 chr3LHet 1425804 1425961 -1129530 - PROTOP_A DNA P -947 158 1 4 595 243 0 0 0 chr3LHet 1425961 1425987 -1129504 + DNAREP1_DM LINE Penelope 568 593 -1 4 595 2385 136 38 46 chr3LHet 1426975 1427392 -1128099 + G3_DM LINE Jockey 166 579 -4026 4 595 986 338 79 37 chr3LHet 1427171 1428198 -1127293 + DIVER2_I LTR Pao 1320 2389 -1758 4 595 368 322 108 25 chr3LHet 1429554 1429758 -1125733 + DIVER2_I LTR Pao 3025 3245 -902 4 595 369 370 19 11 chr3LHet 1429954 1430222 -1125269 + DIVER2_I LTR Pao 3719 3988 -159 4 595 922 179 46 7 chr3LHet 1430587 1430816 -1124675 + DOC4_DM LINE Jockey 1735 2056 -2636 4 595 384 246 65 34 chr3LHet 1430816 1431036 -1124455 + FW3_DM LINE Jockey 1526 1622 -1510 4 595 3685 201 153 35 chr3LHet 1431095 1432478 -1123013 + DOC4_DM LINE Jockey 2081 3973 -767 4 595 28 48 0 0 chr3LHet 1432798 1432840 -1122651 + AT_rich Low_complexity Low_complexity 1 42 0 4 595 222 100 15 91 chr3LHet 1433110 1433176 -1122315 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 4 595 228 229 45 54 chr3LHet 1433522 1433633 -1121858 + Transib5 DNA Transib 960 1069 -1932 4 595 336 130 0 42 chr3LHet 1433984 1434056 -1121435 + DOC LINE Jockey 4624 4692 -33 4 595 240 292 52 52 chr3LHet 1434084 1434239 -1121252 - MICROPIA_I LTR Gypsy -707 3769 3615 4 595 2504 64 128 18 chr3LHet 1434346 1434730 -1120761 - DMCR1A LINE CR1 -2 4468 4043 4 595 1448 56 94 0 chr3LHet 1434716 1435056 -1120435 - DMCR1A LINE CR1 -639 3831 3460 4 595 13262 47 24 8 chr3LHet 1435056 1436763 -1118728 - S2_DM DNA Tc1 0 1735 1 4 595 4229 75 23 2 chr3LHet 1436763 1437338 -1118153 - DMCR1A LINE CR1 -1009 3461 2875 4 595 6275 55 148 8 chr3LHet 1437339 1438263 -1117228 - DMCR1A LINE CR1 -1827 2643 1590 4 595 5147 59 159 7 chr3LHet 1438269 1439196 -1116295 - DMCR1A LINE CR1 -3215 1255 188 4 595 1188 305 74 8 chr3LHet 1439252 1439850 -1115641 - MICROPIA_I LTR Gypsy -1271 3205 2569 4 595 248 310 50 25 chr3LHet 1440300 1440419 -1115072 - MICROPIA_I LTR Gypsy -4309 167 46 4 595 4167 62 26 0 chr3LHet 1440756 1441289 -1114202 + DMCR1A LINE CR1 2424 2970 -1500 4 595 1090 102 11 57 chr3LHet 1441256 1441433 -1114058 + DMCR1A LINE CR1 3309 3477 -993 4 74 4545 33 6 2 chr3LHet 1441453 1441996 -1113495 + DMCR1A LINE CR1 3918 4462 -8 4 596 530 143 311 15 chr3LHet 1441997 1442132 -1113359 + DOC LINE Jockey 362 536 -4189 4 596 3485 119 6 4 chr3LHet 1442115 1442631 -1112860 + DOC LINE Jockey 1120 1636 -3089 4 596 1452 138 9 0 chr3LHet 1442627 1442851 -1112640 + DOC LINE Jockey 1752 1977 -2748 4 596 7780 67 124 2 chr3LHet 1442870 1444143 -1111348 - BS3_DM LINE Jockey -127 1663 235 4 596 341 286 0 0 chr3LHet 1444150 1444262 -1111229 - BS2 LINE Jockey -1837 2884 2773 4 596 757 19 38 0 chr3LHet 1444263 1444369 -1111122 - DOC3_DM LINE Jockey -1 4739 4630 4 596 7491 198 89 94 chr3LHet 1444366 1447127 -1108364 - DOC3_DM LINE Jockey -244 4496 1751 4 596 6001 40 4 0 chr3LHet 1447107 1447852 -1107639 - DMRT1B LINE R1 0 5183 4436 4 596 31417 27 17 3 chr3LHet 1447849 1451705 -1103786 - DMRT1B LINE R1 -1312 3871 1 4 596 2914 47 62 0 chr3LHet 1451882 1452288 -1103203 - DOC3_DM LINE Jockey -2950 1790 1360 4 596 1456 270 21 19 chr3LHet 1452284 1452770 -1102721 - BS2 LINE Jockey -1937 2784 2298 4 596 3277 65 152 0 chr3LHet 1452774 1453374 -1102117 - BS3_DM LINE Jockey -759 1031 341 4 596 675 47 37 0 chr3LHet 1453410 1453517 -1101974 - DOC3_DM LINE Jockey 0 4740 4630 4 596 7726 33 80 1 chr3LHet 1453514 1454897 -1100594 - DOC3_DM LINE Jockey -244 4496 3005 4 596 2628 39 9 3 chr3LHet 1454896 1455229 -1100262 - DOC3_DM LINE Jockey -1886 2854 2520 4 596 4314 35 13 2 chr3LHet 1455215 1455760 -1099731 - DOC3_DM LINE Jockey -2439 2301 1751 4 596 3099 38 86 0 chr3LHet 1455740 1456263 -1099228 - DMRT1B LINE R1 0 5183 4616 4 596 2997 39 5 18 chr3LHet 1481265 1481661 -1073830 - BATUMI_I LTR Pao -5788 2175 1785 4 596 2066 35 3 34 chr3LHet 1481680 1481974 -1073517 - BATUMI_I LTR Pao -679 7284 7000 4 596 4909 29 97 11 chr3LHet 1481972 1482641 -1072850 - DOC3_DM LINE Jockey -1009 3731 3005 4 596 2564 43 21 0 chr3LHet 1482640 1482968 -1072523 - DOC3_DM LINE Jockey -1886 2854 2520 4 596 4339 28 9 6 chr3LHet 1482954 1483491 -1072000 - DOC3_DM LINE Jockey -2439 2301 1763 4 596 5421 39 65 0 chr3LHet 1483476 1484178 -1071313 - DMRT1B LINE R1 0 5183 4436 4 596 20496 28 27 3 chr3LHet 1484175 1487992 -1067499 - DMRT1B LINE R1 -1312 3871 1 4 596 2941 49 59 0 chr3LHet 1488169 1488576 -1066915 - DOC3_DM LINE Jockey -2950 1790 1360 4 596 1480 264 21 19 chr3LHet 1488572 1489058 -1066433 - BS2 LINE Jockey -1937 2784 2298 4 596 5303 48 11 0 chr3LHet 1489075 1489742 -1065749 - BS3_DM LINE Jockey -776 1014 341 4 596 712 37 37 0 chr3LHet 1489778 1489885 -1065606 - DOC3_DM LINE Jockey 0 4740 4630 4 596 7660 32 75 5 chr3LHet 1489882 1491277 -1064214 - DOC3_DM LINE Jockey -244 4496 3005 4 596 2168 44 11 0 chr3LHet 1491296 1491570 -1063921 - DOC3_DM LINE Jockey -1944 2796 2520 4 596 4339 28 9 6 chr3LHet 1491556 1492093 -1063398 - DOC3_DM LINE Jockey -2439 2301 1763 4 596 5421 39 65 0 chr3LHet 1492078 1492780 -1062711 - DMRT1B LINE R1 0 5183 4436 4 596 3470 24 0 0 chr3LHet 1492777 1493187 -1062304 - DMRT1B LINE R1 -1312 3871 3462 4 596 12793 111 48 2 chr3LHet 1493186 1495174 -1060317 - BS2 LINE Jockey -2637 2084 6 4 596 307 151 23 0 chr3LHet 1495179 1495265 -1060226 + DOC LINE Jockey 4636 4723 -2 4 596 15129 84 37 11 chr3LHet 1495263 1497451 -1058040 - G5A_DM LINE Jockey -37 2804 559 4 596 258 221 90 13 chr3LHet 1498185 1498263 -1057228 + DIVER2_I LTR Pao 3049 3132 -1015 4 596 257 200 0 0 chr3LHet 1498268 1498323 -1057168 + DIVER2_I LTR Pao 3367 3421 -726 4 596 285 179 0 18 chr3LHet 1498857 1498914 -1056577 - Gypsy8_LTR LTR Gypsy -248 56 1 4 596 343 230 12 90 chr3LHet 1498915 1499082 -1056409 - Gypsy8_I LTR Gypsy 0 4347 4194 4 596 363 166 541 14 chr3LHet 1499311 1499457 -1056034 - Gypsy8_I LTR Gypsy -529 3818 3596 4 596 527 168 426 30 chr3LHet 1499478 1499703 -1055788 - DNAREP1_DM LINE Penelope -230 364 50 4 596 1977 45 8 0 chr3LHet 1499754 1500000 -1055491 - STALKER4_LTR LTR Gypsy -23 379 132 4 596 1055 30 0 8 chr3LHet 1500000 1500132 -1055359 - STALKER4_LTR LTR Gypsy -271 131 1 4 596 256 108 0 0 chr3LHet 1500151 1500188 -1055303 - DNAREP1_DM LINE Penelope -557 37 1 4 596 1160 161 33 4 chr3LHet 1500185 1500428 -1055063 - DM176_I LTR Gypsy -685 5735 5486 4 596 258 185 0 0 chr3LHet 1500687 1500741 -1054750 - DM297_I LTR Gypsy -922 5245 5192 4 596 1807 166 87 111 chr3LHet 1501003 1501807 -1053684 - PROTOP_A DNA P -56 1097 183 4 596 2075 189 9 25 chr3LHet 1501823 1502262 -1053229 + Gypsy_LTR LTR Gypsy 25 456 -26 4 596 2774 278 126 12 chr3LHet 1502482 1503717 -1051774 + BS2 LINE Jockey 402 1777 -2944 4 596 23243 48 12 0 chr3LHet 1503716 1506521 -1048970 + BS2 LINE Jockey 1884 4721 0 4 596 604 185 261 15 chr3LHet 1506519 1506849 -1048642 + Gypsy_I LTR Gypsy 122 532 -5975 4 596 38293 1 0 1 chr3LHet 1506849 1511029 -1044462 - FW_DM LINE Jockey 0 4692 518 4 596 21767 76 0 0 chr3LHet 1511037 1513776 -1041715 + Gypsy_I LTR Gypsy 508 3246 -3261 4 596 20071 17 1 0 chr3LHet 1513778 1516036 -1039455 - FW_DM LINE Jockey 0 4692 2433 4 596 7034 21 0 0 chr3LHet 1516035 1516840 -1038651 - FW_DM LINE Jockey -2561 2131 1327 4 596 10228 24 0 14 chr3LHet 1516839 1518040 -1037451 - FW_DM LINE Jockey -3504 1188 5 4 596 21918 134 7 14 chr3LHet 1518052 1521343 -1034148 + Gypsy_I LTR Gypsy 3239 6507 0 4 596 2072 189 7 26 chr3LHet 1521359 1521788 -1033703 + Gypsy_LTR LTR Gypsy 25 445 -37 4 596 1376 71 11 16 chr3LHet 1521798 1521985 -1033506 - PROTOP_B DNA P -967 186 1 4 596 692 265 29 25 chr3LHet 1522673 1522913 -1032578 + Invader6_I LTR Gypsy 955 1195 -2904 4 596 310 255 9 64 chr3LHet 1522947 1523056 -1032435 + Invader6_I LTR Gypsy 1381 1483 -2616 4 596 20032 17 1 0 chr3LHet 1523058 1525311 -1030180 - FW_DM LINE Jockey -5 4687 2433 4 596 6234 18 22 0 chr3LHet 1525310 1526029 -1029462 - FW_DM LINE Jockey -2561 2131 1397 4 596 6858 7 0 0 chr3LHet 1526028 1526784 -1028707 - FW_DM LINE Jockey -3562 1130 375 4 596 1076 271 118 25 chr3LHet 1526833 1527344 -1028147 + Invader6_I LTR Gypsy 1525 2082 -2017 4 596 267 191 46 31 chr3LHet 1527972 1528037 -1027454 + Invader1_I LTR Gypsy 3121 3186 0 4 596 246 195 0 0 chr3LHet 1528207 1528248 -1027243 + Invader6_LTR LTR Gypsy 165 205 -188 4 596 298 141 46 15 chr3LHet 1528520 1528585 -1026906 - NINJA_LTR LTR Pao -135 182 116 4 596 256 173 0 19 chr3LHet 1528639 1528692 -1026799 - Gypsy8_LTR LTR Gypsy -252 52 1 4 596 228 271 0 28 chr3LHet 1528693 1528765 -1026726 - Gypsy8_I LTR Gypsy 0 4347 4278 4 596 628 177 298 20 chr3LHet 1529392 1529644 -1025847 - DMCR1A LINE CR1 -2911 1559 1238 4 596 240 191 0 0 chr3LHet 1529904 1529951 -1025540 + DNAREP1_DM LINE Penelope 439 485 -109 4 596 654 206 144 18 chr3LHet 1529976 1530198 -1025293 - DM412 LTR Gypsy -2433 4464 4215 4 596 370 192 150 60 chr3LHet 1530220 1530353 -1025138 - STALKER4_I LTR Gypsy -2777 3753 3667 4 596 26 0 0 0 chr3LHet 1530765 1530791 -1024700 + AT_rich Low_complexity Low_complexity 1 26 0 4 596 255 328 38 4 chr3LHet 1530862 1531098 -1024393 - Stalker2_I LTR Gypsy -4168 3234 2991 4 596 458 127 25 0 chr3LHet 1531334 1531413 -1024078 - DNAREP1_DM LINE Penelope -268 326 246 4 596 1487 124 122 24 chr3LHet 1531420 1531708 -1023783 - DNAREP1_DM LINE Penelope -278 316 1 4 596 24 67 0 0 chr3LHet 1531874 1531919 -1023572 + AT_rich Low_complexity Low_complexity 1 45 0 4 596 25 0 0 0 chr3LHet 1532990 1533015 -1022476 + AT_rich Low_complexity Low_complexity 1 25 0 4 596 26 93 0 0 chr3LHet 1533066 1533141 -1022350 + AT_rich Low_complexity Low_complexity 1 75 0 4 596 606 248 52 38 chr3LHet 1533160 1533449 -1022042 + DNAREP1_DM LINE Penelope 1 293 -301 4 596 12877 89 44 63 chr3LHet 1533450 1535603 -1019888 - DIVER2_I LTR Pao -2035 2112 1 4 596 3499 18 0 0 chr3LHet 1535603 1535988 -1019503 - DIVER2_LTR LTR Pao 0 385 1 4 596 1648 122 53 10 chr3LHet 1535988 1536280 -1019211 - DNAREP1_DM LINE Penelope -289 305 1 4 596 22 56 0 0 chr3LHet 1536417 1536453 -1019038 + AT_rich Low_complexity Low_complexity 1 36 0 4 596 792 98 8 12 chr3LHet 1536931 1537105 -1018386 - DNAREP1_DM LINE Penelope -262 332 120 4 596 427 221 65 52 chr3LHet 1537663 1537911 -1017580 - Gypsy12A_LTR LTR Gypsy -446 1834 1584 4 596 3238 63 8 14 chr3LHet 1537940 1538376 -1017115 + STALKER4_LTR LTR Gypsy 1 399 -3 4 596 25 0 0 0 chr3LHet 1538464 1538489 -1017002 + AT_rich Low_complexity Low_complexity 1 25 0 4 596 45775 31 18 7 chr3LHet 1538513 1544203 -1011288 + STALKER4_I LTR Gypsy 291 6089 -441 4 596 1688 21 67 0 chr3LHet 1544220 1544458 -1011033 + STALKER4_I LTR Gypsy 6277 6530 0 4 596 3248 51 25 15 chr3LHet 1544458 1544887 -1010604 + STALKER4_LTR LTR Gypsy 1 391 -11 4 596 1379 169 25 98 chr3LHet 1544898 1545288 -1010203 - Gypsy12_LTR LTR Gypsy -826 1510 1040 4 596 1188 134 53 0 chr3LHet 1545304 1545491 -1010000 - Gypsy12A_LTR LTR Gypsy -2083 197 1 4 596 363 127 0 0 chr3LHet 1545498 1545553 -1009938 + DNAREP1_DM LINE Penelope 540 594 0 4 596 25 31 0 0 chr3LHet 1545597 1545629 -1009862 + AT_rich Low_complexity Low_complexity 1 32 0 4 596 27 73 0 0 chr3LHet 1545691 1545746 -1009745 + AT_rich Low_complexity Low_complexity 1 55 0 4 596 21 0 0 0 chr3LHet 1546016 1546037 -1009454 + AT_rich Low_complexity Low_complexity 1 21 0 4 596 1906 74 6 109 chr3LHet 1546767 1547087 -1008404 + Gypsy4_LTR LTR Gypsy 1 287 0 4 596 40152 37 44 16 chr3LHet 1547087 1552141 -1003350 + Gypsy4_I LTR Gypsy 1 5294 -994 4 596 4621 49 5 0 chr3LHet 1552138 1552694 -1002797 + Gypsy4_I LTR Gypsy 5532 6090 -198 4 596 705 130 145 0 chr3LHet 1552705 1552843 -1002648 + Gypsy4_LTR LTR Gypsy 1 158 -129 4 596 808 211 41 73 chr3LHet 1553029 1553249 -1002242 - DM176_LTR LTR Gypsy -122 385 173 4 596 2094 236 111 13 chr3LHet 1553918 1554555 -1000936 + Invader3_I LTR Gypsy 56 845 -4043 4 596 248 94 0 0 chr3LHet 1554559 1554591 -1000900 + Invader3_I LTR Gypsy 1440 1471 -3417 4 596 679 87 47 37 chr3LHet 1554592 1554699 -1000792 + PROTOP_B DNA P 1046 1153 0 4 596 1597 232 120 2 chr3LHet 1554699 1555148 -1000343 + Invader3_I LTR Gypsy 1706 2207 -2681 4 596 1900 138 0 0 chr3LHet 1555146 1555435 -1000056 + Invader3_I LTR Gypsy 2541 2829 -2059 4 596 1098 164 377 0 chr3LHet 1555462 1555846 -999645 + Invader3_I LTR Gypsy 3399 3927 -961 4 596 1520 153 66 0 chr3LHet 1555848 1556135 -999356 - Invader3_I LTR Gypsy -92 4796 4491 4 596 310 89 0 0 chr3LHet 1556333 1556378 -999113 - DMRT1B LINE R1 -14 5169 5125 4 596 3826 35 71 12 chr3LHet 1556381 1557401 -998090 + PROTOP DNA P 1 1161 -3319 4 596 1413 16 0 0 chr3LHet 1557399 1557581 -997910 + PROTOP DNA P 3761 3942 -538 4 596 760 219 139 20 chr3LHet 1559637 1559888 -995603 + Invader6_I LTR Gypsy 1708 1988 -2111 4 596 305 89 250 0 chr3LHet 1559886 1559942 -995549 - DNAREP1_DM LINE Penelope -59 535 466 4 596 704 158 55 30 chr3LHet 1559962 1560164 -995327 - DNAREP1_DM LINE Penelope -270 324 118 4 596 376 69 0 17 chr3LHet 1560699 1560758 -994733 - DNAREP1_DM LINE Penelope 0 594 537 4 596 340 155 0 0 chr3LHet 1561103 1561161 -994330 + DIVER2_I LTR Pao 4088 4145 -2 4 596 244 167 0 0 chr3LHet 1561473 1561527 -993964 - DM297_I LTR Gypsy -922 5245 5192 4 596 1645 123 122 30 chr3LHet 1561546 1562063 -993428 - PROTOP_A DNA P -4 1101 570 4 596 203 189 0 0 chr3LHet 1562316 1562353 -993138 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 596 378 0 0 0 chr3LHet 1562727 1562769 -992722 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 596 665 75 0 0 chr3LHet 1564526 1564619 -990872 + PROTOP DNA P 3937 4029 -451 4 596 2038 152 3 21 chr3LHet 1564629 1565012 -990479 - DMRT1B LINE R1 -103 5080 4705 4 596 2869 152 14 2 chr3LHet 1565019 1565520 -989971 - DMRT1B LINE R1 -789 4394 3888 4 596 696 274 173 12 chr3LHet 1565520 1566014 -989477 + Invader6_I LTR Gypsy 928 1869 -2230 4 596 305 89 250 0 chr3LHet 1566019 1566075 -989416 - DNAREP1_DM LINE Penelope -59 535 466 4 596 704 158 55 30 chr3LHet 1566095 1566297 -989194 - DNAREP1_DM LINE Penelope -270 324 118 4 596 376 69 0 17 chr3LHet 1566832 1566891 -988600 - DNAREP1_DM LINE Penelope 0 594 537 4 596 340 155 0 0 chr3LHet 1567236 1567294 -988197 + DIVER2_I LTR Pao 4088 4145 -2 4 596 244 167 0 0 chr3LHet 1567606 1567660 -987831 - DM297_I LTR Gypsy -922 5245 5192 4 596 1645 123 122 30 chr3LHet 1567679 1568196 -987295 - PROTOP_A DNA P -4 1101 570 4 596 203 189 0 0 chr3LHet 1568449 1568486 -987005 + (TA)n Simple_repeat Simple_repeat 2 38 0 4 596 378 0 0 0 chr3LHet 1568860 1568902 -986589 + (TA)n Simple_repeat Simple_repeat 2 43 0 4 596 388 102 371 38 chr3LHet 1569807 1569939 -985552 - DNAREP1_DM LINE Penelope -34 560 385 4 596 257 206 59 93 chr3LHet 1570107 1570225 -985266 - DNAREP1_DM LINE Penelope -275 319 206 4 596 1672 99 53 21 chr3LHet 1570473 1570849 -984642 - DNAREP1_DM LINE Penelope -303 291 1 4 596 21 0 0 0 chr3LHet 1570856 1570877 -984614 + AT_rich Low_complexity Low_complexity 1 21 0 4 596 22 56 0 0 chr3LHet 1570929 1570965 -984526 + AT_rich Low_complexity Low_complexity 1 36 0 4 596 23 0 0 0 chr3LHet 1571167 1571190 -984301 + AT_rich Low_complexity Low_complexity 1 23 0 4 596 32 75 0 0 chr3LHet 1572483 1572550 -982941 + AT_rich Low_complexity Low_complexity 1 67 0 4 596 303 253 10 21 chr3LHet 1572688 1572785 -982706 - DNAREP1_DM LINE Penelope -154 440 345 4 74 1299 126 80 120 chr3LHet 1572846 1573197 -982294 - DNAREP1_DM LINE Penelope 0 594 258 4 597 444 224 174 0 chr3LHet 1573197 1573267 -982224 - DNAREP1_DM LINE Penelope -65 529 445 4 597 270 81 0 0 chr3LHet 1573267 1573304 -982187 + (TCTG)n Simple_repeat Simple_repeat 4 40 0 4 597 444 224 174 0 chr3LHet 1573304 1573394 -982097 - DNAREP1_DM LINE Penelope -150 444 342 4 597 699 65 131 0 chr3LHet 1573457 1573564 -981927 - DNAREP1_DM LINE Penelope -9 585 465 4 597 548 275 38 0 chr3LHet 1574387 1574547 -980944 - DIVER2_I LTR Pao -1723 2424 2259 4 597 864 136 11 16 chr3LHet 1575171 1575372 -980119 + DNAREP1_DM LINE Penelope 120 332 -262 4 597 1145 143 72 16 chr3LHet 1575351 1575600 -979891 + DNAREP1_DM LINE Penelope 183 445 -149 4 597 3643 49 8 0 chr3LHet 1575600 1576089 -979402 + G4_DM LINE Jockey 3363 3855 -1 4 597 608 199 69 91 chr3LHet 1576127 1576359 -979132 + FB4_DM DNA Tc1 1460 1686 -2403 4 597 4998 64 113 3 chr3LHet 1576482 1577386 -978105 + FB4_DM DNA Tc1 1110 2112 -1977 4 597 668 71 205 0 chr3LHet 1577392 1577519 -977972 + FB4_DM DNA Tc1 2606 2758 -1331 4 597 1375 126 5 0 chr3LHet 1577890 1578112 -977379 - Gypsy12A_LTR LTR Gypsy -2057 223 1 4 597 2176 152 62 7 chr3LHet 1578112 1578531 -976960 - Gypsy12_I LTR Gypsy 0 5546 5105 4 597 8724 182 65 4 chr3LHet 1578524 1580302 -975189 - Gypsy12_I LTR Gypsy -1165 4381 2495 4 597 5411 172 75 10 chr3LHet 1580307 1581419 -974072 - Gypsy12_I LTR Gypsy -3407 2139 955 4 597 3454 24 9 0 chr3LHet 1581419 1581843 -973648 - ROO_LTR LTR Pao 0 428 1 4 597 46421 20 39 3 chr3LHet 1581843 1584534 -970957 - ROO_I LTR Pao 0 8256 5490 4 597 216 0 0 0 chr3LHet 1584534 1584558 -970933 + (CATAA)n Simple_repeat Simple_repeat 2 25 0 4 597 46421 18 24 2 chr3LHet 1584558 1589545 -965946 - ROO_I LTR Pao -2767 5489 275 4 597 1248 13 0 65 chr3LHet 1589542 1589712 -965779 - ROO_I LTR Pao -8097 159 1 4 597 3505 28 2 0 chr3LHet 1589712 1590139 -965352 - ROO_LTR LTR Pao 0 428 1 4 597 1368 193 180 90 chr3LHet 1590139 1591019 -964472 - Gypsy12_I LTR Gypsy -4587 959 1 4 597 2927 91 35 7 chr3LHet 1591019 1591471 -964020 - Gypsy12A_LTR LTR Gypsy 0 2280 1816 4 597 389 182 65 39 chr3LHet 1591495 1591649 -963842 - Gypsy12A_LTR LTR Gypsy -525 1755 1598 4 597 942 181 145 58 chr3LHet 1591881 1592280 -963211 + Gypsy_LTR LTR Gypsy 29 462 -20 4 597 294 222 83 62 chr3LHet 1592371 1592563 -962928 + Gypsy_I LTR Gypsy 63 258 -6249 4 597 26 0 0 67 chr3LHet 1592563 1592608 -962883 + AT_rich Low_complexity Low_complexity 1 42 0 4 597 4194 69 7 0 chr3LHet 1592614 1593194 -962297 - BS2 LINE Jockey -6 4715 4132 4 597 1009 272 57 0 chr3LHet 1593250 1593551 -961940 + BS2 LINE Jockey 788 1105 -3616 4 597 14649 62 26 0 chr3LHet 1593672 1595647 -959844 + BS2 LINE Jockey 1591 3616 -1105 4 597 4838 208 5 4 chr3LHet 1595679 1596670 -958821 + Gypsy_I LTR Gypsy 452 1443 -5064 4 597 686 203 20 0 chr3LHet 1596670 1596818 -958673 + Gypsy_I LTR Gypsy 2276 2426 -4081 4 597 9722 147 62 0 chr3LHet 1596815 1598525 -956966 + Gypsy_I LTR Gypsy 3040 4855 -1652 4 597 275 211 0 0 chr3LHet 1598791 1598848 -956643 - DOC LINE Jockey -1878 2847 2791 4 597 4827 202 29 0 chr3LHet 1598848 1599862 -955629 - Gypsy_I LTR Gypsy -269 6238 5196 4 597 10128 145 61 0 chr3LHet 1599864 1601645 -953846 - Gypsy_I LTR Gypsy -1578 4929 3040 4 597 686 203 20 0 chr3LHet 1601642 1601790 -953701 - Gypsy_I LTR Gypsy -4081 2426 2276 4 597 4363 216 3 3 chr3LHet 1601790 1602703 -952788 - Gypsy_I LTR Gypsy -5064 1443 531 4 597 5674 133 6 3 chr3LHet 1602703 1603620 -951871 - Gypsy_I LTR Gypsy -5137 1370 452 4 597 14567 61 26 1 chr3LHet 1603652 1605629 -949862 - BS2 LINE Jockey -1105 3616 1591 4 597 1916 89 14 0 chr3LHet 1605655 1605946 -949545 + BS2 LINE Jockey 4427 4721 0 4 597 24 0 0 0 chr3LHet 1605946 1605970 -949521 + AT_rich Low_complexity Low_complexity 1 24 0 4 597 446 214 23 126 chr3LHet 1605975 1606189 -949302 - BS2 LINE Jockey -4458 263 72 4 597 3269 163 206 79 chr3LHet 1606240 1607748 -947743 - Gypsy12_I LTR Gypsy -3842 1704 6 4 597 1584 87 4 0 chr3LHet 1607748 1607977 -947514 - Gypsy12A_LTR LTR Gypsy 0 2280 2051 4 597 4412 169 65 52 chr3LHet 1607987 1609207 -946284 - Gypsy12A_LTR LTR Gypsy -525 1755 520 4 597 3716 18 50 3 chr3LHet 1609207 1610231 -945260 - PROTOP DNA P 0 1105 2 4 597 989 131 8 133 chr3LHet 1610232 1610487 -945004 - Gypsy12A_LTR LTR Gypsy -1754 526 304 4 597 261 146 0 0 chr3LHet 1610491 1610532 -944959 - Gypsy12_I LTR Gypsy -401 5145 5105 4 597 2844 192 23 15 chr3LHet 1610525 1611552 -943939 - Gypsy12_I LTR Gypsy -1165 4381 3245 4 597 590 124 208 8 chr3LHet 1611562 1611692 -943799 + DOC LINE Jockey 2891 3046 -1679 4 597 4339 108 43 4 chr3LHet 1611687 1612400 -943091 + DOC LINE Jockey 2855 3595 -1130 4 597 21 36 0 0 chr3LHet 1612413 1612441 -943050 + AT_rich Low_complexity Low_complexity 1 28 0 4 597 248 82 198 30 chr3LHet 1612479 1612580 -942911 - Gypsy12A_LTR LTR Gypsy -465 1815 1698 4 597 1375 126 5 0 chr3LHet 1612621 1612843 -942648 - Gypsy12A_LTR LTR Gypsy -2057 223 1 4 597 2393 153 23 9 chr3LHet 1612843 1613279 -942212 - Gypsy12_I LTR Gypsy 0 5546 5105 4 597 8673 182 67 4 chr3LHet 1613272 1615047 -940444 - Gypsy12_I LTR Gypsy -1165 4381 2495 4 597 2844 196 5 0 chr3LHet 1615052 1615609 -939882 - Gypsy12_I LTR Gypsy -3407 2139 1580 4 597 2990 157 109 14 chr3LHet 1615627 1616294 -939197 - Gypsy12_I LTR Gypsy -4082 1464 734 4 597 38 22 0 0 chr3LHet 1616294 1616339 -939152 + AT_rich Low_complexity Low_complexity 1 45 0 4 597 903 201 24 14 chr3LHet 1616344 1616551 -938940 - Gypsy12_I LTR Gypsy -5048 498 290 4 597 37 0 0 0 chr3LHet 1616867 1616904 -938587 + AT_rich Low_complexity Low_complexity 1 37 0 4 597 2154 119 0 0 chr3LHet 1617441 1617786 -937705 - DOC LINE Jockey -1878 2847 2503 4 597 831 186 55 62 chr3LHet 1617856 1618148 -937343 - Gypsy_LTR LTR Gypsy -92 390 101 4 597 582 239 94 0 chr3LHet 1618138 1618297 -937194 - Gypsy_I LTR Gypsy -133 6374 6201 4 597 920 145 42 12 chr3LHet 1618270 1618438 -937053 - Gypsy_I LTR Gypsy -1139 5368 5196 4 597 6885 179 54 1 chr3LHet 1618438 1620187 -935304 - Gypsy_I LTR Gypsy -1578 4929 2948 4 597 686 203 20 0 chr3LHet 1620185 1620333 -935158 - Gypsy_I LTR Gypsy -4081 2426 2276 4 597 4872 207 5 4 chr3LHet 1620333 1621324 -934167 - Gypsy_I LTR Gypsy -5064 1443 452 4 597 14747 62 23 0 chr3LHet 1621356 1623336 -932155 - BS2 LINE Jockey -1105 3616 1591 4 597 1009 272 57 0 chr3LHet 1623457 1623758 -931733 - BS2 LINE Jockey -3616 1105 788 4 597 3942 66 48 2 chr3LHet 1623814 1624268 -931223 + BS2 LINE Jockey 4132 4612 -109 4 597 180 77 0 0 chr3LHet 1624268 1624294 -931197 + (TTA)n Simple_repeat Simple_repeat 2 27 0 4 597 3942 66 48 2 chr3LHet 1624294 1624403 -931088 + BS2 LINE Jockey 4613 4721 0 4 597 941 177 213 0 chr3LHet 1624414 1624742 -930749 + Gypsy12_I LTR Gypsy 1669 2066 -3480 4 597 284 240 13 0 chr3LHet 1624762 1624837 -930654 + Gypsy12_I LTR Gypsy 2495 2570 -2976 4 597 1243 100 35 39 chr3LHet 1625329 1625559 -929932 - Gypsy8_I LTR Gypsy -4111 236 8 4 597 383 105 0 0 chr3LHet 1625573 1625630 -929861 - Gypsy8_LTR LTR Gypsy -247 57 1 4 597 8033 186 80 3 chr3LHet 1625632 1627325 -928166 + Gypsy12_I LTR Gypsy 2558 4381 -1165 4 597 2423 153 23 7 chr3LHet 1627318 1627753 -927738 + Gypsy12_I LTR Gypsy 5105 5546 0 4 597 1375 126 5 0 chr3LHet 1627753 1627975 -927516 + Gypsy12A_LTR LTR Gypsy 1 223 -2057 4 597 248 82 198 30 chr3LHet 1628016 1628117 -927374 + Gypsy12A_LTR LTR Gypsy 1698 1815 -465 4 597 21 36 0 0 chr3LHet 1628155 1628183 -927308 + AT_rich Low_complexity Low_complexity 1 28 0 4 597 4339 107 43 4 chr3LHet 1628196 1628909 -926582 - DOC LINE Jockey -1130 3595 2855 4 597 364 164 0 0 chr3LHet 1628904 1628965 -926526 - DOC LINE Jockey -1679 3046 2986 4 597 371 154 0 0 chr3LHet 1628969 1629034 -926457 - DOC LINE Jockey -1806 2919 2855 4 597 3159 118 108 0 chr3LHet 1629029 1629596 -925895 - DOC LINE Jockey -1679 3046 2419 4 597 411 187 51 39 chr3LHet 1629898 1630054 -925437 + Gypsy12A_LTR LTR Gypsy 1598 1755 -525 4 597 2940 89 35 7 chr3LHet 1630078 1630530 -924961 + Gypsy12A_LTR LTR Gypsy 1816 2280 0 4 597 3186 170 170 59 chr3LHet 1630530 1632456 -923035 + Gypsy12_I LTR Gypsy 1 2139 -3407 4 597 7220 173 73 5 chr3LHet 1632461 1633892 -921599 + Gypsy12_I LTR Gypsy 2495 4023 -1523 4 597 981 219 14 0 chr3LHet 1633889 1634108 -921383 + Gypsy12_I LTR Gypsy 4160 4381 -1165 4 597 2422 155 23 7 chr3LHet 1634101 1634536 -920955 + Gypsy12_I LTR Gypsy 5105 5546 0 4 597 1359 131 5 0 chr3LHet 1634536 1634758 -920733 + Gypsy12A_LTR LTR Gypsy 1 223 -2057 4 597 22 80 0 0 chr3LHet 1634823 1634873 -920618 + AT_rich Low_complexity Low_complexity 1 50 0 4 597 24 53 0 0 chr3LHet 1634928 1634966 -920525 + AT_rich Low_complexity Low_complexity 1 38 0 4 597 1807 122 19 10 chr3LHet 1634979 1635286 -920205 - DOC LINE Jockey -1130 3595 3286 4 597 577 181 7 101 chr3LHet 1635354 1635502 -919989 + DM176_LTR LTR Gypsy 151 284 -223 4 597 32 0 0 0 chr3LHet 1635642 1635674 -919817 + AT_rich Low_complexity Low_complexity 1 32 0 4 597 381 85 0 0 chr3LHet 1636433 1636492 -918999 + ZAM_LTR LTR Gypsy 1 59 -413 4 597 231 167 18 18 chr3LHet 1636700 1636755 -918736 + ZAM_LTR LTR Gypsy 296 350 -122 4 597 1069 115 138 5 chr3LHet 1636997 1637207 -918284 - DNAREP1_DM LINE Penelope -356 238 1 4 597 1686 180 101 106 chr3LHet 1638928 1639523 -915968 - DNAREP1_DM LINE Penelope 0 594 3 4 597 552 321 9 0 chr3LHet 1640135 1640359 -915132 + DIVER2_I LTR Pao 535 760 -3387 4 597 8913 57 46 22 chr3LHet 1640592 1641932 -913559 + G4_DM LINE Jockey 1 1372 -2484 4 597 270 234 0 0 chr3LHet 1641936 1642000 -913491 + DM176_LTR LTR Gypsy 221 284 -223 4 597 368 52 17 0 chr3LHet 1642191 1642249 -913242 + ZAM_LTR LTR Gypsy 1 59 -413 4 597 231 167 18 18 chr3LHet 1642474 1642529 -912962 + ZAM_LTR LTR Gypsy 296 350 -122 4 597 1069 115 138 5 chr3LHet 1642769 1642979 -912512 - DNAREP1_DM LINE Penelope -356 238 1 4 597 775 268 93 26 chr3LHet 1643574 1643842 -911649 + DIVER2_I LTR Pao 3697 3982 -165 4 597 294 244 240 18 chr3LHet 1644127 1644298 -911193 + BATUMI_I LTR Pao 5878 6086 -1877 4 597 237 229 0 0 chr3LHet 1644367 1644415 -911076 + BATUMI_I LTR Pao 6208 6255 -1708 4 597 337 280 17 0 chr3LHet 1645273 1645391 -910100 + DMCR1A LINE CR1 3575 3694 -776 4 597 258 278 51 10 chr3LHet 1645405 1645503 -909988 + DMCR1A LINE CR1 3753 3854 -616 4 597 26 82 0 0 chr3LHet 1645655 1645716 -909775 + AT_rich Low_complexity Low_complexity 1 61 0 4 597 24 53 0 0 chr3LHet 1646317 1646355 -909136 + AT_rich Low_complexity Low_complexity 1 38 0 4 597 1727 110 123 53 chr3LHet 1646385 1646798 -908693 - DNAREP1_DM LINE Penelope 0 594 153 4 597 837 195 35 71 chr3LHet 1646775 1647057 -908434 - DNAREP1_DM LINE Penelope -268 326 55 4 597 7225 158 25 42 chr3LHet 1647252 1649139 -906352 + FW3_DM LINE Jockey 1 1809 -982 4 597 374 69 0 65 chr3LHet 1649175 1649233 -906258 + FW3_DM LINE Jockey 1246 1299 -1833 4 597 10582 46 3 0 chr3LHet 1649233 1650589 -904902 + TC1_DM DNA Tc1 1 1360 -306 4 597 789 0 0 0 chr3LHet 1650588 1650681 -904810 + TC1_DM DNA Tc1 1574 1666 0 4 597 9056 69 125 60 chr3LHet 1650681 1652261 -903230 + FW3_DM LINE Jockey 1302 2986 -146 4 597 561 251 20 30 chr3LHet 1653767 1654035 -901456 + DNAREP1_DM LINE Penelope 1 390 -204 4 597 27 0 0 0 chr3LHet 1655142 1655169 -900322 + AT_rich Low_complexity Low_complexity 1 27 0 4 597 540 238 41 14 chr3LHet 1655954 1656099 -899392 - DMCR1A LINE CR1 -3472 998 850 4 597 26 30 0 0 chr3LHet 1656194 1656227 -899264 + AT_rich Low_complexity Low_complexity 1 33 0 4 597 333 281 7 7 chr3LHet 1656243 1656379 -899112 + DNAREP1_DM LINE Penelope 168 303 -291 4 597 542 216 23 29 chr3LHet 1656375 1656547 -898944 - DNAREP1_DM LINE Penelope -278 316 146 4 597 28 29 0 0 chr3LHet 1657059 1657094 -898397 + AT_rich Low_complexity Low_complexity 1 35 0 4 597 1660 37 98 55 chr3LHet 1657517 1657773 -897718 - MDG3_LTR LTR Gypsy 0 267 1 4 597 39436 15 29 3 chr3LHet 1657773 1662633 -892858 - MDG3_I LTR Gypsy 0 4986 1 4 597 1928 45 4 50 chr3LHet 1662632 1662912 -892579 - MDG3_LTR LTR Gypsy 0 267 1 4 597 1287 39 0 0 chr3LHet 1663239 1663395 -892096 + PROTOP_B DNA P 1 156 -997 4 597 1544 188 22 12 chr3LHet 1663394 1663956 -891535 - IDEFIX_I LTR Gypsy -4823 805 202 4 597 335 238 0 0 chr3LHet 1663957 1664037 -891454 - IDEFIX_I LTR Gypsy -5548 80 1 4 597 23 0 0 0 chr3LHet 1664277 1664300 -891191 + AT_rich Low_complexity Low_complexity 1 23 0 4 597 2008 29 0 0 chr3LHet 1664459 1664704 -890787 + G5_DM LINE Jockey 4420 4664 -192 4 597 1481 123 59 36 chr3LHet 1664702 1665006 -890485 - IDEFIX_LTR LTR Gypsy -283 311 1 4 597 2208 7 0 78 chr3LHet 1665019 1665326 -890165 + DM176_LTR LTR Gypsy 1 283 -224 4 597 1203 31 25 0 chr3LHet 1665327 1665487 -890004 + DM176_LTR LTR Gypsy 251 414 -93 4 597 19901 15 6 0 chr3LHet 1665491 1665651 -889840 + DM176_I LTR Gypsy 329 502 -5918 4 597 181 30 29 57 chr3LHet 1665651 1665686 -889805 + (TAA)n Simple_repeat Simple_repeat 3 36 0 4 597 48690 6 2 0 chr3LHet 1665686 1671593 -883898 + DM176_I LTR Gypsy 503 6420 0 4 597 3841 10 18 104 chr3LHet 1671593 1672148 -883343 + DM176_LTR LTR Gypsy 1 507 0 4 597 1475 126 134 0 chr3LHet 1672405 1672666 -882825 - ROO_I LTR Pao -790 7466 7171 4 597 444 77 0 71 chr3LHet 1672679 1672749 -882742 - Gypsy3_I LTR Gypsy -3661 2516 2452 4 597 228 226 21 0 chr3LHet 1672757 1672827 -882664 - Gypsy3_I LTR Gypsy -4178 2834 2770 4 597 334 154 665 0 chr3LHet 1672824 1672931 -882560 - Gypsy3_I LTR Gypsy -4162 2015 1867 4 597 1201 102 250 39 chr3LHet 1672935 1673191 -882300 - BEL_I LTR Pao -810 4594 4285 4 597 4723 47 79 17 chr3LHet 1673206 1673903 -881588 - DOC5_DM LINE Jockey 0 4682 3943 4 597 5284 67 74 74 chr3LHet 1673902 1674808 -880683 - DOC5_DM LINE Jockey -1158 3524 2619 4 597 6372 51 105 2 chr3LHet 1674777 1675654 -879837 - ZAM_I LTR Gypsy -2529 4961 3995 4 597 1026 84 217 0 chr3LHet 1675645 1675821 -879670 - DOC5_DM LINE Jockey -2817 1865 1651 4 597 2878 51 32 3 chr3LHet 1675821 1676196 -879295 - ROOA_LTR LTR Pao 0 386 1 4 597 3649 50 195 5 chr3LHet 1676196 1676757 -878734 - DOC5_DM LINE Jockey -3027 1655 987 4 597 5790 8 0 3 chr3LHet 1676757 1677417 -878074 - QUASIMODO_LTR LTR Gypsy 0 658 1 4 597 51415 12 2 0 chr3LHet 1677417 1683468 -872023 - QUASIMODO_I LTR Gypsy 0 6060 1 4 597 5703 8 8 3 chr3LHet 1683468 1684123 -871368 - QUASIMODO_LTR LTR Gypsy 0 658 1 4 597 51096 14 2 1 chr3LHet 1684123 1690174 -865317 - QUASIMODO_I LTR Gypsy 0 6060 1 4 597 5418 8 36 3 chr3LHet 1690174 1690811 -864680 - QUASIMODO_LTR LTR Gypsy 0 658 1 4 597 5566 66 151 6 chr3LHet 1690811 1691679 -863812 - DOC5_DM LINE Jockey -3687 995 1 4 597 1442 157 43 25 chr3LHet 1691676 1691957 -863534 - BEL_I LTR Pao -1121 4283 3998 4 597 303 73 0 0 chr3LHet 1691970 1692011 -863480 + DMCR1A LINE CR1 1932 1972 -2498 4 597 657 200 13 13 chr3LHet 1692027 1692184 -863307 - BEL_LTR LTR Pao 0 361 205 4 597 1896 169 110 108 chr3LHet 1692900 1693491 -862000 - DNAREP1_DM LINE Penelope 0 594 3 4 597 618 321 9 0 chr3LHet 1694103 1694327 -861164 + DIVER2_I LTR Pao 535 760 -3387 4 597 8684 46 47 23 chr3LHet 1694558 1695772 -859719 + G4_DM LINE Jockey 1 1243 -2613 4 597 13462 35 13 1 chr3LHet 1695763 1697402 -858089 + G4_DM LINE Jockey 2198 3856 0 4 597 417 226 0 11 chr3LHet 1697514 1697608 -857883 + DIVER2_I LTR Pao 888 980 -3167 4 597 309 358 20 90 chr3LHet 1697633 1697977 -857514 + DIVER2_I LTR Pao 1145 1464 -2683 4 597 876 345 73 14 chr3LHet 1698197 1698823 -856668 + DIVER2_I LTR Pao 1762 2424 -1723 4 597 540 284 88 15 chr3LHet 1699154 1699358 -856133 + DIVER2_I LTR Pao 3448 3666 -481 4 597 444 233 192 0 chr3LHet 1699396 1699516 -855975 + DIVER2_I LTR Pao 3840 3982 -165 4 597 339 238 240 18 chr3LHet 1699801 1699972 -855519 + BATUMI_I LTR Pao 5878 6086 -1877 4 597 372 280 17 0 chr3LHet 1700959 1701077 -854414 + DMCR1A LINE CR1 3575 3694 -776 4 597 286 278 51 10 chr3LHet 1701091 1701189 -854302 + DMCR1A LINE CR1 3753 3854 -616 4 597 26 82 0 0 chr3LHet 1701345 1701406 -854085 + AT_rich Low_complexity Low_complexity 1 61 0 4 597 24 53 0 0 chr3LHet 1702007 1702045 -853446 + AT_rich Low_complexity Low_complexity 1 38 0 4 597 1869 110 123 53 chr3LHet 1702075 1702488 -853003 - DNAREP1_DM LINE Penelope 0 594 153 4 597 697 175 49 24 chr3LHet 1702465 1702629 -852862 - DNAREP1_DM LINE Penelope -268 326 159 4 597 315 114 82 41 chr3LHet 1702719 1702792 -852699 - DNAREP1_DM LINE Penelope -459 135 60 4 597 44 80 0 0 chr3LHet 1702804 1702904 -852587 + AT_rich Low_complexity Low_complexity 1 100 0 4 597 32 0 0 0 chr3LHet 1702969 1703001 -852490 + AT_rich Low_complexity Low_complexity 1 32 0 4 598 8952 27 104 0 chr3LHet 1704136 1706544 -848947 - DMCR1A LINE CR1 0 4470 1813 4 598 1396 35 6 0 chr3LHet 1706548 1706718 -848773 - DMCR1A LINE CR1 -3104 1366 1196 4 598 2492 25 3 0 chr3LHet 1706718 1707004 -848487 - Gypsy4_LTR LTR Gypsy 0 287 1 4 598 52089 16 19 3 chr3LHet 1707004 1713078 -842413 - Gypsy4_I LTR Gypsy 0 6288 117 4 598 2339 31 3 37 chr3LHet 1713094 1713391 -842100 - Gypsy4_LTR LTR Gypsy 0 287 1 4 598 1940 40 0 0 chr3LHet 1713391 1713619 -841872 - DMCR1A LINE CR1 -3271 1199 972 4 598 6064 37 34 11 chr3LHet 1713616 1714401 -841090 - DMCR1A LINE CR1 -3667 803 1 4 598 610 251 20 30 chr3LHet 1714720 1714988 -840503 + DNAREP1_DM LINE Penelope 1 390 -204 4 598 21 100 0 0 chr3LHet 1715462 1715532 -839959 + AT_rich Low_complexity Low_complexity 1 70 0 4 598 27 0 0 0 chr3LHet 1716096 1716123 -839368 + AT_rich Low_complexity Low_complexity 1 27 0 4 598 587 238 41 14 chr3LHet 1716900 1717045 -838446 - DMCR1A LINE CR1 -3472 998 850 4 598 26 30 0 0 chr3LHet 1717140 1717173 -838318 + AT_rich Low_complexity Low_complexity 1 33 0 4 598 372 281 7 7 chr3LHet 1717189 1717325 -838166 + DNAREP1_DM LINE Penelope 168 303 -291 4 598 580 216 24 30 chr3LHet 1717321 1717488 -838003 - DNAREP1_DM LINE Penelope -278 316 151 4 598 191 88 0 29 chr3LHet 1717625 1717660 -837831 + (CTATA)n Simple_repeat Simple_repeat 2 35 0 4 598 28 29 0 0 chr3LHet 1718043 1718078 -837413 + AT_rich Low_complexity Low_complexity 1 35 0 4 598 545 96 92 126 chr3LHet 1719126 1719245 -836246 + Gypsy12A_LTR LTR Gypsy 1 115 -2165 4 598 906 92 14 7 chr3LHet 1719243 1719386 -836105 + Gypsy12A_LTR LTR Gypsy 226 369 -1911 4 598 378 167 143 0 chr3LHet 1719416 1719500 -835991 + Gypsy12A_LTR LTR Gypsy 1432 1527 -753 4 598 4111 47 72 29 chr3LHet 1719500 1720211 -835280 + PROTOP DNA P 1 671 -3809 4 598 587 69 0 43 chr3LHet 1720215 1720354 -835137 + PROTOP DNA P 4302 4479 -1 4 598 3872 111 46 71 chr3LHet 1720356 1721133 -834358 + Gypsy12A_LTR LTR Gypsy 1523 2280 0 4 598 237 198 148 65 chr3LHet 1721133 1721232 -834259 - DNAREP1_DM LINE Penelope -275 319 212 4 598 3043 120 25 21 chr3LHet 1721477 1722173 -833318 + Gypsy12A_LTR LTR Gypsy 1595 2290 -46 4 598 30 27 0 0 chr3LHet 1722928 1722965 -832526 + AT_rich Low_complexity Low_complexity 1 37 0 4 598 225 36 0 0 chr3LHet 1723278 1723306 -832185 - P_DG DNA P -109 2779 2752 4 598 606 177 95 0 chr3LHet 1723562 1723709 -831782 + MDG1_I LTR Gypsy 2895 3055 -3541 4 598 21 36 0 0 chr3LHet 1723722 1723750 -831741 + AT_rich Low_complexity Low_complexity 1 28 0 4 598 23 54 0 0 chr3LHet 1724186 1724223 -831268 + AT_rich Low_complexity Low_complexity 1 37 0 4 598 9410 26 0 2 chr3LHet 1726100 1727271 -828220 + TRANSIB2 DNA Transib 1 1169 -1675 4 598 3416 19 21 5 chr3LHet 1727270 1727703 -827788 + TRANSIB2 DNA Transib 2405 2844 0 4 598 845 160 32 110 chr3LHet 1728159 1728405 -827086 + DMLTR5 LTR Gypsy 40 266 0 4 598 1247 121 84 25 chr3LHet 1728419 1728656 -826835 + HMSBEAGLE_I LTR Gypsy 109 359 -6170 4 598 44 20 0 0 chr3LHet 1728667 1728718 -826773 + AT_rich Low_complexity Low_complexity 1 51 0 4 598 27332 141 17 8 chr3LHet 1728880 1733444 -822047 + HMSBEAGLE_I LTR Gypsy 1212 5814 -715 4 598 6871 49 9 26 chr3LHet 1733753 1734742 -820749 - Gypsy7_I LTR Gypsy -4012 972 1 4 598 430 112 67 0 chr3LHet 1734742 1734831 -820660 - Gypsy7_LTR LTR Gypsy 0 251 157 4 598 631 2 129 4 chr3LHet 1734844 1735362 -820129 + (TA)n Simple_repeat Simple_repeat 1 582 0 4 598 2660 39 0 0 chr3LHet 1735362 1735697 -819794 + DM1731_LTR LTR Copia 2 336 0 4 598 1369 0 6 0 chr3LHet 1735697 1735858 -819633 + DM1731_I LTR Copia 1 162 -3814 4 598 15581 12 0 5 chr3LHet 1735958 1737850 -817641 - QUASIMODO_I LTR Gypsy -4177 1883 1 4 598 5655 5 0 0 chr3LHet 1737850 1738507 -816984 - QUASIMODO_LTR LTR Gypsy 0 658 2 4 598 401 103 15 0 chr3LHet 1738507 1738575 -816916 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 598 276 231 0 0 chr3LHet 1738651 1738729 -816762 + (TA)n Simple_repeat Simple_repeat 2 79 0 4 598 22 0 0 0 chr3LHet 1738823 1738845 -816646 + AT_rich Low_complexity Low_complexity 1 22 0 4 598 236 253 90 50 chr3LHet 1738918 1739018 -816473 + DNAREP1_DM LINE Penelope 489 592 -2 4 598 350 149 10 147 chr3LHet 1739257 1739359 -816132 - DNAREP1_DM LINE Penelope -6 588 501 4 598 953 43 11 125 chr3LHet 1739363 1739547 -815944 + S2_DM DNA Tc1 1 163 -1572 4 598 314 173 0 58 chr3LHet 1739573 1739659 -815832 - DNAREP1_DM LINE Penelope -26 568 488 4 598 269 165 117 58 chr3LHet 1739782 1739885 -815606 - Gypsy2_LTR LTR Gypsy -150 203 95 4 598 3941 233 7 40 chr3LHet 1739899 1740890 -814601 - Gypsy2_I LTR Gypsy -91 6044 5087 4 598 240 353 0 0 chr3LHet 1741042 1741144 -814347 - G2_DM LINE Jockey -2720 382 281 4 598 24 32 0 0 chr3LHet 1742098 1742129 -813362 + AT_rich Low_complexity Low_complexity 1 31 0 4 598 245 279 0 0 chr3LHet 1742135 1742203 -813288 + Invader4_I LTR Gypsy 1235 1302 -1111 4 598 1031 337 61 29 chr3LHet 1742282 1743219 -812272 + Invader6_I LTR Gypsy 1629 2595 -1504 4 598 249 278 22 11 chr3LHet 1743635 1743726 -811765 + Invader4_I LTR Gypsy 1783 1874 -539 4 598 491 145 0 0 chr3LHet 1744490 1744572 -810919 + DNAREP1_DM LINE Penelope 304 385 -209 4 598 1699 0 0 0 chr3LHet 1744572 1744770 -810721 + Copia2_LTR_DM LTR Copia 1 198 0 4 598 371 147 577 0 chr3LHet 1744770 1744905 -810586 + DNAREP1_DM LINE Penelope 381 594 0 4 598 25 31 0 0 chr3LHet 1745169 1745201 -810290 + AT_rich Low_complexity Low_complexity 1 32 0 4 598 219 188 0 0 chr3LHet 1745514 1745562 -809929 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 4 598 3253 28 0 0 chr3LHet 1745564 1745957 -809534 - Invader6_LTR LTR Gypsy 0 393 1 4 598 6478 46 21 12 chr3LHet 1745957 1746870 -808621 - Invader6_I LTR Gypsy 0 4099 3219 4 598 16990 12 9 0 chr3LHet 1746861 1748853 -806638 - Invader6_I LTR Gypsy -2089 2010 1 4 598 3291 25 0 0 chr3LHet 1748853 1749246 -806245 - Invader6_LTR LTR Gypsy 0 393 1 4 598 485 125 11 0 chr3LHet 1749246 1749334 -806157 + (TA)n Simple_repeat Simple_repeat 2 90 0 4 598 267 234 0 0 chr3LHet 1749411 1749488 -806003 + (TA)n Simple_repeat Simple_repeat 2 78 0 4 598 22 0 0 0 chr3LHet 1749582 1749604 -805887 + AT_rich Low_complexity Low_complexity 1 22 0 4 598 350 149 10 147 chr3LHet 1750016 1750118 -805373 - DNAREP1_DM LINE Penelope -6 588 501 4 598 1109 43 12 6 chr3LHet 1750122 1750284 -805207 + S2_DM DNA Tc1 1 163 -1572 4 598 347 185 0 36 chr3LHet 1750310 1750394 -805097 - DNAREP1_DM LINE Penelope -26 568 488 4 598 242 194 48 58 chr3LHet 1750516 1750620 -804871 - Gypsy2_LTR LTR Gypsy -156 197 95 4 598 233 286 0 0 chr3LHet 1750634 1750704 -804787 - Gypsy2_I LTR Gypsy -91 6044 5975 4 598 337 224 0 0 chr3LHet 1750713 1750789 -804702 - Gypsy3_I LTR Gypsy -172 6005 5930 4 598 1923 273 8 4 chr3LHet 1750755 1751259 -804232 - Gypsy2_I LTR Gypsy -174 5961 5456 4 598 2410 267 19 10 chr3LHet 1751259 1751962 -803529 - Gypsy6_I LTR Gypsy -1715 5297 4589 4 598 395 96 106 24 chr3LHet 1751967 1752052 -803439 - DNAREP1_DM LINE Penelope -336 258 167 4 598 684 176 216 9 chr3LHet 1752024 1752385 -803106 - DNAREP1_DM LINE Penelope -272 322 5 4 598 379 133 36 12 chr3LHet 1753052 1753136 -802355 - DNAREP1_DM LINE Penelope -256 338 253 4 598 9824 42 58 3 chr3LHet 1753141 1756191 -799300 - DMCR1A LINE CR1 -16 4454 1197 4 598 1794 34 0 0 chr3LHet 1756186 1756424 -799067 - DMCR1A LINE CR1 -4191 279 42 4 598 1161 171 120 0 chr3LHet 1756432 1756706 -798785 - DNAREP1_DM LINE Penelope -287 307 1 4 598 484 161 119 16 chr3LHet 1756703 1756829 -798662 - DNAREP1_DM LINE Penelope -336 258 120 4 598 918 138 84 51 chr3LHet 1756833 1757183 -798308 - DNAREP1_DM LINE Penelope -262 332 86 4 598 23 33 0 0 chr3LHet 1757830 1757860 -797631 + AT_rich Low_complexity Low_complexity 1 30 0 4 598 1890 120 36 16 chr3LHet 1758169 1758580 -796911 + QUASIMODO_LTR LTR Gypsy 1 554 -104 4 598 2255 129 31 10 chr3LHet 1758688 1759102 -796389 - Invader1_LTR LTR Gypsy 0 423 1 4 598 1978 101 10 0 chr3LHet 1759132 1759440 -796051 - Invader1_I LTR Gypsy -158 3028 2718 4 598 25 31 0 0 chr3LHet 1759476 1759508 -795983 + AT_rich Low_complexity Low_complexity 1 32 0 4 598 26 50 0 0 chr3LHet 1759989 1760029 -795462 + AT_rich Low_complexity Low_complexity 1 40 0 4 598 347 217 62 67 chr3LHet 1760189 1760367 -795124 + Gypsy3_LTR LTR Gypsy 109 285 -113 4 598 2464 228 9 8 chr3LHet 1760410 1761041 -794450 + Gypsy_I LTR Gypsy 2363 2994 -3513 4 598 189 0 0 0 chr3LHet 1761041 1761062 -794429 + (T)n Simple_repeat Simple_repeat 1 21 0 4 598 6523 0 0 0 chr3LHet 1761067 1761817 -793674 - FW_DM LINE Jockey -2243 2449 1700 4 598 1974 287 18 4 chr3LHet 1761889 1762565 -792926 + Gypsy_I LTR Gypsy 3147 3831 -2676 4 598 726 272 45 14 chr3LHet 1762585 1762872 -792619 + Gypsy_DS LTR Gypsy 4441 4736 -2786 4 598 38417 19 7 0 chr3LHet 1762868 1767513 -787978 - FW_DM LINE Jockey -13 4679 3 4 598 427 239 27 6 chr3LHet 1767496 1767681 -787810 + BURDOCK_I LTR Gypsy 4146 4480 -2027 4 598 1384 316 36 9 chr3LHet 1767681 1768377 -787114 + GTWIN_I LTR Gypsy 3534 4476 -2053 4 598 5741 20 1 0 chr3LHet 1768371 1769069 -786422 - FW_DM LINE Jockey -13 4679 3981 4 598 28872 25 9 2 chr3LHet 1769078 1772639 -782852 - FW_DM LINE Jockey -1105 3587 3 4 598 1703 314 71 20 chr3LHet 1772638 1773587 -781904 + Gypsy_I LTR Gypsy 4312 5308 -1199 4 598 2960 45 5 0 chr3LHet 1773639 1774016 -781475 - STALKER4_LTR LTR Gypsy -23 379 1 4 598 1069 52 0 0 chr3LHet 1774016 1774169 -781322 - STALKER4_I LTR Gypsy 0 6530 6378 4 598 13423 146 48 40 chr3LHet 1774178 1777159 -778332 - Stalker2_I LTR Gypsy -301 6295 3325 4 598 18427 55 24 24 chr3LHet 1777153 1779762 -775729 - STALKER4_I LTR Gypsy -3504 3026 163 4 598 28 48 0 0 chr3LHet 1779769 1779811 -775680 + AT_rich Low_complexity Low_complexity 1 42 0 4 598 2987 61 0 0 chr3LHet 1779915 1780290 -775201 - STALKER4_LTR LTR Gypsy -27 375 1 4 598 1258 332 45 51 chr3LHet 1780392 1781472 -774019 + Gypsy_I LTR Gypsy 5447 6922 -600 4 598 26 50 0 0 chr3LHet 1781537 1781577 -773914 + AT_rich Low_complexity Low_complexity 1 40 0 4 598 47 0 0 0 chr3LHet 1781724 1781771 -773720 + AT_rich Low_complexity Low_complexity 1 47 0 4 598 21 57 0 0 chr3LHet 1782391 1782426 -773065 + AT_rich Low_complexity Low_complexity 1 35 0 4 598 24 0 0 0 chr3LHet 1783636 1783660 -771831 + AT_rich Low_complexity Low_complexity 1 24 0 4 598 648 299 68 23 chr3LHet 1784948 1785595 -769896 - DM176_I LTR Gypsy -2298 3562 3027 4 598 1559 33 19 0 chr3LHet 1785523 1785737 -769754 - TLD2 Unknown Unknown 0 218 1 4 598 337 307 0 0 chr3LHet 1785668 1785769 -769722 - Gypsy_DS LTR Gypsy -4187 3335 3235 4 598 380 316 15 15 chr3LHet 1787486 1787715 -767776 - DM176_I LTR Gypsy -4868 992 850 4 598 47 0 0 0 chr3LHet 1788761 1788808 -766683 + AT_rich Low_complexity Low_complexity 1 47 0 4 598 432 247 53 83 chr3LHet 1789298 1789563 -765928 + Gypsy3_LTR LTR Gypsy 112 368 -30 4 598 7536 295 25 13 chr3LHet 1790457 1793767 -761724 + Gypsy_I LTR Gypsy 916 4666 -2856 4 598 1170 283 13 13 chr3LHet 1793759 1794138 -761353 + GTWIN_I LTR Gypsy 4284 4662 -1759 4 598 1697 334 39 45 chr3LHet 1794191 1795476 -760015 + Gypsy_I LTR Gypsy 5243 6922 -600 4 598 26 50 0 0 chr3LHet 1795541 1795581 -759910 + AT_rich Low_complexity Low_complexity 1 40 0 4 598 293 217 151 75 chr3LHet 1795743 1795982 -759509 + Gypsy3_LTR LTR Gypsy 112 368 -30 4 598 6275 314 32 27 chr3LHet 1796043 1799101 -756390 - MICROPIA_I LTR Gypsy -632 3844 772 4 598 1262 331 24 19 chr3LHet 1799136 1799759 -755732 - MICROPIA_I LTR Gypsy -3850 626 1 4 598 198 0 0 0 chr3LHet 1799765 1799787 -755704 + (TTC)n Simple_repeat Simple_repeat 1 22 0 4 598 1659 138 30 3 chr3LHet 1799827 1800124 -755367 - Invader1_LTR LTR Gypsy -118 305 1 4 598 283 193 11 74 chr3LHet 1800385 1800480 -755011 + (CAA)n Simple_repeat Simple_repeat 2 90 0 4 598 3001 282 96 48 chr3LHet 1800501 1802739 -752752 + QUASIMODO_I LTR Gypsy 448 2793 -3267 4 598 2373 257 51 24 chr3LHet 1802772 1804094 -751397 + QUASIMODO_I LTR Gypsy 3247 4705 -1355 4 598 687 176 0 0 chr3LHet 1804180 1804316 -751175 + QUASIMODO_I LTR Gypsy 5141 5276 -784 4 598 835 235 34 0 chr3LHet 1804360 1804594 -750897 + QUASIMODO_I LTR Gypsy 5506 5747 -313 4 598 23 0 0 0 chr3LHet 1804594 1804617 -750874 + AT_rich Low_complexity Low_complexity 1 23 0 4 598 225 0 0 0 chr3LHet 1804617 1804642 -750849 + (TAA)n Simple_repeat Simple_repeat 1 25 0 4 598 642 181 57 117 chr3LHet 1804826 1805057 -750434 + Gypsy8_LTR LTR Gypsy 1 304 0 4 598 345 157 122 11 chr3LHet 1805377 1805467 -750024 - DNAREP1_DM LINE Penelope -323 271 172 4 598 879 178 27 46 chr3LHet 1805467 1805795 -749696 - DNAREP1_DM LINE Penelope -264 330 86 4 598 2801 55 222 2 chr3LHet 1805815 1806270 -749221 - IDEFIX_LTR LTR Gypsy 0 594 40 4 598 41884 46 17 23 chr3LHet 1806268 1811893 -743598 - IDEFIX_I LTR Gypsy -37 5591 1 4 598 25 0 0 0 chr3LHet 1812208 1812233 -743258 + AT_rich Low_complexity Low_complexity 1 25 0 4 598 3152 3 0 0 chr3LHet 1812430 1812776 -742715 + Invader4_LTR LTR Gypsy 1 346 0 4 598 8277 2 0 0 chr3LHet 1812776 1813681 -741810 + Invader4_I LTR Gypsy 1 905 -1508 4 598 11653 5 22 0 chr3LHet 1813681 1815014 -740477 + Invader4_I LTR Gypsy 1052 2413 0 4 598 3152 3 0 0 chr3LHet 1815014 1815360 -740131 + Invader4_LTR LTR Gypsy 1 346 0 4 598 4080 43 7 11 chr3LHet 1815360 1815901 -739590 - IDEFIX_LTR LTR Gypsy -16 578 40 4 598 3302 39 2 2 chr3LHet 1815899 1816337 -739154 - IDEFIX_I LTR Gypsy -37 5591 5154 4 598 310 100 0 0 chr3LHet 1816332 1816392 -739099 - IDEFIX_I LTR Gypsy -385 5243 5184 4 598 3329 26 55 0 chr3LHet 1816417 1816833 -738658 - IDEFIX_LTR LTR Gypsy -155 439 1 4 598 255 125 0 0 chr3LHet 1816801 1816841 -738650 + BARI1 DNA Tc1 3 42 -1708 4 598 760 150 196 12 chr3LHet 1816841 1817101 -738390 - FW_DM LINE Jockey -11 4681 4374 4 598 2050 194 49 2 chr3LHet 1817110 1817588 -737903 - FW_DM LINE Jockey -577 4115 3795 4 598 4180 158 138 36 chr3LHet 1817589 1818969 -736522 - FW_DM LINE Jockey -2275 2518 824 4 598 414 92 0 30 chr3LHet 1818981 1819048 -736443 - FW_DM LINE Jockey -4525 167 103 4 598 26 64 0 0 chr3LHet 1819543 1819590 -735901 + AT_rich Low_complexity Low_complexity 1 47 0 4 598 452 277 63 45 chr3LHet 1819833 1820056 -735435 - GTWIN_I LTR Gypsy -2997 3424 3125 4 598 1702 271 2 2 chr3LHet 1820106 1820565 -734926 + Copia2_I LTR Copia 2457 2915 -1247 4 598 11842 38 30 1 chr3LHet 1820565 1822183 -733308 + TC1_DM DNA Tc1 1 1666 0 4 598 1476 259 70 2 chr3LHet 1822195 1822636 -732855 + Copia2_I LTR Copia 2930 3400 -762 4 598 2251 238 46 2 chr3LHet 1822638 1823185 -732306 + Copia2_I LTR Copia 3507 4077 -85 4 598 4014 45 12 0 chr3LHet 1823315 1823807 -731684 - Baggins1 LINE LOA -1158 4295 3798 4 598 14332 46 87 0 chr3LHet 1823814 1826082 -729409 - Baggins1 LINE LOA -1922 3531 1069 4 598 2703 36 258 9 chr3LHet 1826071 1826493 -728998 - Baggins1 LINE LOA -4701 752 226 4 598 212 137 20 0 chr3LHet 1826855 1826906 -728585 + (TA)n Simple_repeat Simple_repeat 2 53 0 4 598 432 124 39 55 chr3LHet 1826909 1827037 -728454 - FW_DM LINE Jockey -8 4684 4559 4 598 350 146 0 0 chr3LHet 1827010 1827065 -728426 - FW_DM LINE Jockey -251 4441 4387 4 598 6125 137 25 6 chr3LHet 1827096 1828091 -727400 - FW_DM LINE Jockey -577 4115 3102 4 598 2124 238 0 0 chr3LHet 1828089 1828581 -726910 - Gypsy5_I LTR Gypsy -1782 4727 4236 4 598 3587 167 124 34 chr3LHet 1828563 1829411 -726080 - Gypsy5_I LTR Gypsy -2624 3885 2961 4 598 4822 223 53 11 chr3LHet 1829421 1830596 -724895 - Gypsy5_I LTR Gypsy -4039 2470 1247 4 598 286 169 217 43 chr3LHet 1830631 1830792 -724699 - Transib-N1_DM DNA Transib -189 325 137 4 598 34 55 0 0 chr3LHet 1831016 1831071 -724420 + AT_rich Low_complexity Low_complexity 1 55 0 4 598 33 0 0 0 chr3LHet 1831142 1831175 -724316 + AT_rich Low_complexity Low_complexity 1 33 0 4 598 583 164 9 0 chr3LHet 1831232 1831342 -724149 - Transib-N1_DM DNA Transib -403 111 1 4 598 563 282 19 33 chr3LHet 1831459 1831672 -723819 + GTWIN_I LTR Gypsy 1395 1604 -4817 4 598 3628 190 64 11 chr3LHet 1831662 1832413 -723078 + GTWIN_I LTR Gypsy 1920 2710 -3711 4 598 1564 203 149 3 chr3LHet 1832411 1832795 -722696 + GTWIN_I LTR Gypsy 2881 3383 -3038 4 598 1364 44 0 16 chr3LHet 1832789 1832972 -722519 + IDEFIX_I LTR Gypsy 5449 5628 0 4 598 3218 53 204 2 chr3LHet 1832972 1833466 -722025 + IDEFIX_LTR LTR Gypsy 1 594 0 4 598 915 182 22 76 chr3LHet 1833480 1833815 -721676 + DNAREP1_DM LINE Penelope 59 325 -269 4 598 324 159 135 11 chr3LHet 1833815 1833904 -721587 + DNAREP1_DM LINE Penelope 172 271 -323 4 598 2468 0 0 0 chr3LHet 1834014 1834290 -721201 + Copia_LTR LTR Copia 1 276 0 4 74 41929 0 0 3 chr3LHet 1834290 1838895 -716596 + Copia_I LTR Copia 1 4593 0 4 599 2468 0 0 0 chr3LHet 1838895 1839171 -716320 + Copia_LTR LTR Copia 1 276 0 4 599 658 181 57 117 chr3LHet 1839386 1839617 -715874 - Gypsy8_LTR LTR Gypsy 0 304 1 4 599 198 0 0 0 chr3LHet 1839799 1839821 -715670 + (TTA)n Simple_repeat Simple_repeat 1 22 0 4 599 23 0 0 0 chr3LHet 1839821 1839844 -715647 + AT_rich Low_complexity Low_complexity 1 23 0 4 599 863 228 50 16 chr3LHet 1839844 1840102 -715389 - TV1I LTR Gypsy -313 5747 5481 4 599 714 183 18 0 chr3LHet 1840122 1840275 -715216 - TV1I LTR Gypsy -784 5276 5141 4 599 4320 251 97 42 chr3LHet 1840344 1844152 -711339 - TV1I LTR Gypsy -1355 4705 657 4 599 1547 174 5 80 chr3LHet 1844203 1844592 -710899 - Gypsy12A_LTR LTR Gypsy -835 1445 1032 4 599 274 127 154 31 chr3LHet 1844600 1844665 -710826 - Gypsy12A_LTR LTR Gypsy -1396 884 812 4 599 908 35 0 9 chr3LHet 1844675 1844789 -710702 - TC1_DM DNA Tc1 0 1666 1554 4 599 317 170 187 29 chr3LHet 1844796 1844935 -710556 - Gypsy12A_LTR LTR Gypsy -1482 798 638 4 599 5316 66 49 44 chr3LHet 1844936 1845747 -709744 + PROTOP_B DNA P 4 818 -335 4 599 670 154 66 7 chr3LHet 1845742 1845879 -709612 - DNAREP1_DM LINE Penelope -262 332 188 4 599 1086 96 42 0 chr3LHet 1846005 1846171 -709320 - Invader2_I LTR Gypsy -3217 1375 1203 4 599 2492 118 15 4 chr3LHet 1846167 1846592 -708899 - Invader2_I LTR Gypsy -3492 1100 620 4 599 1265 172 17 53 chr3LHet 1846592 1846892 -708599 + Gypsy5_LTR LTR Gypsy 1 289 -141 4 599 344 96 19 37 chr3LHet 1847033 1847087 -708404 + Gypsy5_I LTR Gypsy 1 53 -6456 4 599 9399 18 25 0 chr3LHet 1847312 1848390 -707101 + PROTOP_A DNA P 1 1105 0 4 599 281 168 45 98 chr3LHet 1849140 1849252 -706239 + Gypsy5_I LTR Gypsy 38 143 -6366 4 599 3573 18 0 0 chr3LHet 1849252 1849645 -705846 - Invader6_LTR LTR Gypsy 0 393 1 4 599 28409 60 12 3 chr3LHet 1849645 1854133 -701358 - Invader6_I LTR Gypsy 0 4099 1 4 599 3573 18 0 0 chr3LHet 1854133 1854526 -700965 - Invader6_LTR LTR Gypsy 0 393 1 4 599 28466 59 13 3 chr3LHet 1854526 1859013 -696478 - Invader6_I LTR Gypsy 0 4099 1 4 599 3573 18 0 0 chr3LHet 1859013 1859406 -696085 - Invader6_LTR LTR Gypsy 0 393 1 4 599 26832 92 18 11 chr3LHet 1859406 1863725 -691766 - Invader6_I LTR Gypsy 0 4099 167 4 599 4359 179 44 0 chr3LHet 1863710 1864556 -690935 + Gypsy5_I LTR Gypsy 4386 5268 -1241 4 599 1772 147 0 0 chr3LHet 1864555 1864861 -690630 + Gypsy5_I LTR Gypsy 5589 5894 -615 4 599 799 141 8 0 chr3LHet 1864863 1864984 -690507 + Gypsy5_I LTR Gypsy 6388 6509 0 4 599 1294 169 17 53 chr3LHet 1864984 1865284 -690207 + Gypsy5_LTR LTR Gypsy 1 289 -141 4 599 335 214 143 70 chr3LHet 1865425 1865724 -689767 - Invader2_I LTR Gypsy -3969 623 305 4 599 556 151 23 98 chr3LHet 1865933 1866065 -689426 - Gypsy5_LTR LTR Gypsy -232 198 77 4 599 5193 237 35 4 chr3LHet 1866084 1867330 -688161 - Gypsy5_I LTR Gypsy 0 6509 5226 4 599 3525 226 0 8 chr3LHet 1867330 1868091 -687400 - Gypsy5_I LTR Gypsy -1519 4990 4236 4 599 3272 170 171 35 chr3LHet 1868073 1868887 -686604 - Gypsy5_I LTR Gypsy -2624 3885 2961 4 599 4870 214 43 6 chr3LHet 1868894 1869968 -685523 - Gypsy5_I LTR Gypsy -4036 2473 1359 4 599 180 0 0 0 chr3LHet 1869968 1869988 -685503 + (TTA)n Simple_repeat Simple_repeat 3 22 0 4 599 3000 239 120 11 chr3LHet 1870024 1870959 -684532 - Gypsy5_I LTR Gypsy -5227 1282 246 4 599 189 0 0 0 chr3LHet 1871514 1871535 -683956 + (T)n Simple_repeat Simple_repeat 1 21 0 4 599 699 143 23 110 chr3LHet 1871535 1871708 -683783 - Gypsy5_LTR LTR Gypsy -196 234 77 4 599 1203 129 328 56 chr3LHet 1871777 1872105 -683386 - Invader2_I LTR Gypsy -4176 416 1 4 599 1128 158 39 103 chr3LHet 1872105 1872387 -683104 - Invader2_LTR LTR Gypsy 0 266 3 4 599 29 0 0 0 chr3LHet 1872968 1872997 -682494 + AT_rich Low_complexity Low_complexity 1 29 0 4 599 236 333 77 28 chr3LHet 1873709 1873891 -681600 + DIVER_I LTR Pao 711 901 -4742 4 599 338 349 33 7 chr3LHet 1873920 1874073 -681418 + DIVER_I LTR Pao 1088 1244 -4399 4 599 267 268 0 0 chr3LHet 1874230 1874301 -681190 + DIVER_I LTR Pao 1473 1543 -4100 4 599 18724 30 12 0 chr3LHet 1874577 1876741 -678750 - DOC3_DM LINE Jockey 0 4740 2552 4 599 3193 54 5 14 chr3LHet 1876721 1877136 -678355 - DOC3_DM LINE Jockey -2734 2006 1596 4 599 1316 19 0 25 chr3LHet 1877134 1877292 -678199 - DOC3_DM LINE Jockey -3247 1493 1340 4 599 30507 6 2 0 chr3LHet 1877419 1881479 -674012 + DMRT1B LINE R1 1064 5183 0 4 599 21732 6 15 0 chr3LHet 1881492 1883907 -671584 + DMRT1B LINE R1 2733 5183 0 4 599 13464 39 17 0 chr3LHet 1884007 1884148 -671343 + DMRT1B LINE R1 1 141 -5042 4 599 180 0 0 0 chr3LHet 1884148 1884168 -671323 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 4 599 13464 39 17 0 chr3LHet 1884168 1885647 -669844 + DMRT1B LINE R1 142 1647 -3536 4 599 17427 30 1 1 chr3LHet 1885639 1887658 -667833 + DMRT1B LINE R1 1835 3853 -1330 4 599 3488 37 47 0 chr3LHet 1887662 1888090 -667401 + DMRT1B LINE R1 4736 5183 0 4 599 2422 51 156 2 chr3LHet 1888090 1888559 -666932 - DOC3_DM LINE Jockey -3387 1353 813 4 599 3978 45 2 0 chr3LHet 1888566 1889077 -666414 - DOC3_DM LINE Jockey -4218 522 11 4 599 377 70 338 0 chr3LHet 1889626 1889697 -665794 - DNAREP1_DM LINE Penelope 0 594 500 4 599 907 183 89 97 chr3LHet 1889699 1890069 -665422 - ROVER-LTR_DM LTR Gypsy 0 367 1 4 599 1548 154 110 30 chr3LHet 1890069 1890632 -664859 - DNAREP1_DM LINE Penelope -107 487 1 4 599 370 320 0 17 chr3LHet 1893081 1893262 -662229 + Gypsy12_I LTR Gypsy 3165 3342 -2204 4 599 8824 29 1 0 chr3LHet 1893856 1894960 -660531 - PROTOP_A DNA P 0 1105 1 4 599 1941 28 0 4 chr3LHet 1894960 1895208 -660283 + NINJA_I LTR Pao 5469 5715 -296 4 599 1102 8 0 0 chr3LHet 1895212 1895340 -660151 - PROTOP_A DNA P -977 128 1 4 599 232 310 48 43 chr3LHet 1895728 1895937 -659554 + Gypsy12_I LTR Gypsy 4907 5116 -430 4 599 2336 94 80 5 chr3LHet 1895957 1896330 -659161 + MICROPIA_I LTR Gypsy 2027 2427 -2049 4 599 986 112 383 35 chr3LHet 1896329 1896584 -658907 + MICROPIA_I LTR Gypsy 2652 2995 -1481 4 599 1220 42 0 6 chr3LHet 1896584 1896750 -658741 + DMCR1A LINE CR1 1 165 -4305 4 599 9784 155 19 9 chr3LHet 1896756 1898934 -656557 - HELENA_RT LINE Jockey 0 1317 77 4 599 2041 299 8 6 chr3LHet 1898955 1899664 -655827 - BS LINE Jockey -2393 2733 2023 4 599 246 243 14 0 chr3LHet 1899702 1899772 -655719 + DIVER2_I LTR Pao 3058 3128 -1019 4 599 892 305 95 17 chr3LHet 1899775 1900185 -655306 + DIVER2_I LTR Pao 3432 3873 -274 4 599 289 289 11 0 chr3LHet 1900628 1900718 -654773 + BATUMI_I LTR Pao 6166 6256 -1707 4 599 337 280 17 0 chr3LHet 1901615 1901733 -653758 + DMCR1A LINE CR1 3575 3694 -776 4 599 258 278 51 10 chr3LHet 1901747 1901845 -653646 + DMCR1A LINE CR1 3753 3854 -616 4 599 26 82 0 0 chr3LHet 1901997 1902058 -653433 + AT_rich Low_complexity Low_complexity 1 61 0 4 599 1104 34 216 16 chr3LHet 1902614 1902915 -652576 + DMCR1A LINE CR1 2 362 -4108 4 599 9758 46 5 0 chr3LHet 1902953 1904188 -651303 - HELENA_RT LINE Jockey 0 1317 77 4 599 1236 337 16 37 chr3LHet 1904193 1904943 -650548 - BS LINE Jockey -1526 3600 2867 4 599 1033 288 14 9 chr3LHet 1904964 1905314 -650177 - BS LINE Jockey -2393 2733 2382 4 599 591 317 4 4 chr3LHet 1905316 1905547 -649944 - BS LINE Jockey -2873 2253 2023 4 599 246 243 14 0 chr3LHet 1905585 1905655 -649836 + DIVER2_I LTR Pao 3058 3128 -1019 4 599 892 305 95 17 chr3LHet 1905658 1906068 -649423 + DIVER2_I LTR Pao 3432 3873 -274 4 599 337 280 17 0 chr3LHet 1907498 1907616 -647875 + DMCR1A LINE CR1 3575 3694 -776 4 599 258 278 51 10 chr3LHet 1907630 1907728 -647763 + DMCR1A LINE CR1 3753 3854 -616 4 599 26 82 0 0 chr3LHet 1907880 1907941 -647550 + AT_rich Low_complexity Low_complexity 1 61 0 4 599 870 287 4 4 chr3LHet 1921491 1921760 -633731 + Gypsy6_I LTR Gypsy 6572 6840 -172 4 599 233 286 0 0 chr3LHet 1921771 1921841 -633650 + Gypsy2_I LTR Gypsy 5975 6044 -91 4 599 264 184 48 58 chr3LHet 1921855 1921959 -633532 + Gypsy2_LTR LTR Gypsy 95 197 -156 4 599 314 173 0 58 chr3LHet 1922081 1922167 -633324 + DNAREP1_DM LINE Penelope 488 568 -26 4 599 1085 50 12 6 chr3LHet 1922193 1922355 -633136 - S2_DM DNA Tc1 -1572 163 1 4 599 365 138 10 147 chr3LHet 1922359 1922461 -633030 + DNAREP1_DM LINE Penelope 501 588 -6 4 599 22 0 0 0 chr3LHet 1922873 1922895 -632596 + AT_rich Low_complexity Low_complexity 1 22 0 4 599 237 232 0 0 chr3LHet 1922997 1923066 -632425 + (TA)n Simple_repeat Simple_repeat 2 70 0 4 599 422 88 15 0 chr3LHet 1923143 1923211 -632280 + (TA)n Simple_repeat Simple_repeat 1 69 0 4 599 5220 2 50 0 chr3LHet 1923211 1923837 -631654 + QUASIMODO_LTR LTR Gypsy 2 658 0 4 599 3074 5 0 26 chr3LHet 1923837 1924214 -631277 + QUASIMODO_I LTR Gypsy 1 367 -5693 4 599 6065 69 67 6 chr3LHet 1924215 1925114 -630377 + DMCR1A LINE CR1 3198 4151 -319 4 599 472 56 0 0 chr3LHet 1925111 1925182 -630309 + DMCR1A LINE CR1 4288 4358 -112 4 599 1991 83 57 0 chr3LHet 1925196 1925497 -629994 + MICROPIA_I LTR Gypsy 2981 3298 -1178 4 599 1549 107 183 10 chr3LHet 1925498 1925810 -629681 + MICROPIA_I LTR Gypsy 3648 4013 -463 4 599 299 326 13 13 chr3LHet 1926002 1926151 -629340 - G2_DM LINE Jockey -200 2902 2754 4 599 987 305 56 39 chr3LHet 1926371 1927124 -628367 - G2_DM LINE Jockey -588 2514 1749 4 599 232 317 14 14 chr3LHet 1928242 1928389 -627102 - TAHRE LINE telomeric -7890 2573 2427 4 599 254 302 30 30 chr3LHet 1928265 1928398 -627093 - G_DM LINE Jockey -3179 1167 1035 4 599 2490 112 8 75 chr3LHet 1928919 1929440 -626051 + MICROPIA_I LTR Gypsy 3991 4476 0 4 599 760 153 0 14 chr3LHet 1929445 1929584 -625907 + MICROPIA_LTR LTR Gypsy 96 232 -244 4 599 301 213 0 16 chr3LHet 1929653 1929715 -625776 + MICROPIA_LTR LTR Gypsy 416 476 0 4 599 364 297 41 6 chr3LHet 1929741 1929962 -625529 - Gypsy5_I LTR Gypsy -1971 4538 4337 4 599 569 244 0 0 chr3LHet 1930292 1930411 -625080 + FW_DM LINE Jockey 1856 1974 -2718 4 599 2491 100 2 28 chr3LHet 1930450 1930872 -624619 + M4DM DNA Transib 1 411 -1024 4 599 320 301 16 16 chr3LHet 1930806 1931023 -624468 - TRANSIB2 DNA Transib -425 2419 2263 4 599 286 295 60 70 chr3LHet 1931268 1931552 -623939 - TRANSIB2 DNA Transib -871 1973 1693 4 599 228 234 78 0 chr3LHet 1931642 1931719 -623772 - TRANSIB1 DNA Transib -1442 1572 1490 4 599 6469 96 12 14 chr3LHet 1932223 1933247 -622244 + M4DM DNA Transib 406 1427 -8 4 599 569 244 0 0 chr3LHet 1933599 1933718 -621773 + FW_DM LINE Jockey 1856 1974 -2718 4 599 2545 97 0 31 chr3LHet 1933757 1934181 -621310 + M4DM DNA Transib 1 411 -1024 4 599 323 304 15 15 chr3LHet 1934107 1934332 -621159 - TRANSIB2 DNA Transib -417 2427 2263 4 599 286 295 60 70 chr3LHet 1934577 1934861 -620630 - TRANSIB2 DNA Transib -871 1973 1693 4 599 228 234 78 0 chr3LHet 1934951 1935028 -620463 - TRANSIB1 DNA Transib -1442 1572 1490 4 599 6485 95 12 14 chr3LHet 1935532 1936556 -618935 + M4DM DNA Transib 406 1427 -8 4 599 569 244 0 0 chr3LHet 1936908 1937027 -618464 + FW_DM LINE Jockey 1856 1974 -2718 4 599 2545 97 0 31 chr3LHet 1937066 1937490 -618001 + M4DM DNA Transib 1 411 -1024 4 599 323 304 15 15 chr3LHet 1937416 1937641 -617850 - TRANSIB2 DNA Transib -417 2427 2263 4 599 314 292 60 70 chr3LHet 1937886 1938170 -617321 - TRANSIB2 DNA Transib -871 1973 1693 4 599 1265 87 0 0 chr3LHet 1938226 1938409 -617082 + M4DM DNA Transib 1253 1435 0 4 599 259 252 69 69 chr3LHet 1938443 1938618 -616873 - MAX_LTR LTR Pao -29 292 118 4 599 2799 189 91 56 chr3LHet 1938644 1939399 -616092 - MAX_I LTR Pao -132 7782 7001 4 599 302 171 100 0 chr3LHet 1939502 1939570 -615921 - MAX_I LTR Pao -1841 6073 5999 4 599 1511 183 156 78 chr3LHet 1939570 1940121 -615370 - DNAREP1_DM LINE Penelope 0 594 1 4 599 624 148 73 69 chr3LHet 1940525 1940777 -614714 - DNAREP1_DM LINE Penelope -262 332 110 4 599 209 160 38 51 chr3LHet 1940781 1940860 -614631 + (TTATA)n Simple_repeat Simple_repeat 1 78 0 4 599 469 216 110 31 chr3LHet 1941414 1941605 -613886 + Invader3_LTR LTR Gypsy 1 206 -92 4 599 889 253 48 17 chr3LHet 1941610 1941900 -613591 + Invader3_I LTR Gypsy 3 301 -4587 4 599 1285 233 184 0 chr3LHet 1941917 1942425 -613066 + Invader3_I LTR Gypsy 383 983 -3905 4 599 543 173 0 0 chr3LHet 1942422 1942526 -612965 + HOBO DNA hAT 23 126 -2890 4 599 47 0 0 0 chr3LHet 1942540 1942587 -612904 + AT_rich Low_complexity Low_complexity 1 47 0 4 599 2871 158 142 23 chr3LHet 1943175 1943951 -611540 + Invader3_I LTR Gypsy 3875 4742 -146 4 599 523 200 8 23 chr3LHet 1944010 1944138 -611353 + Invader3_LTR LTR Gypsy 89 214 -84 4 599 328 246 173 19 chr3LHet 1944245 1944525 -610966 - QUASIMODO_I LTR Gypsy -3052 3008 2685 4 599 898 285 50 32 chr3LHet 1944529 1944932 -610559 - TOM_I LTR Gypsy -3352 2760 2351 4 599 259 119 0 0 chr3LHet 1945622 1945664 -609827 + DNAREP1_DM LINE Penelope 1 42 -552 4 599 407 121 0 0 chr3LHet 1945729 1945795 -609696 + DNAREP1_DM LINE Penelope 529 594 0 4 599 295 234 107 23 chr3LHet 1945773 1945904 -609587 + IDEFIX_I LTR Gypsy 3947 4088 -1540 4 599 411 259 17 12 chr3LHet 1946009 1946181 -609310 + TV1I LTR Gypsy 4627 4799 -1164 4 599 282 143 32 0 chr3LHet 1946368 1946431 -609060 - TIRANT_LTR LTR Gypsy -352 65 1 4 599 11041 169 64 28 chr3LHet 1946431 1948775 -606716 - TIRANT_I LTR Gypsy 0 7692 5266 4 599 7574 47 38 3 chr3LHet 1948775 1949804 -605687 + PROTOP_A DNA P 1 1065 -40 4 599 2558 43 3 0 chr3LHet 1949804 1950149 -605342 + TRANSIB2 DNA Transib 1 346 -2498 4 599 1279 13 0 0 chr3LHet 1950146 1950299 -605192 + TRANSIB2 DNA Transib 2692 2844 0 4 599 351 0 0 0 chr3LHet 1950299 1950341 -605150 + PROTOP_A DNA P 1062 1104 -1 4 599 5578 151 0 1 chr3LHet 1950341 1951259 -604232 - TIRANT_I LTR Gypsy -2420 5272 4356 4 599 5846 152 31 1 chr3LHet 1951261 1952959 -602532 - TIRANT_I LTR Gypsy -3549 4143 2395 4 599 1158 145 0 0 chr3LHet 1952954 1953133 -602358 - TIRANT_I LTR Gypsy -5684 2008 1830 4 599 1196 198 11 22 chr3LHet 1953124 1953392 -602099 - TIRANT_I LTR Gypsy -6034 1658 1394 4 599 1814 64 0 12 chr3LHet 1953482 1953736 -601755 - Gypsy7_LTR LTR Gypsy 0 251 1 4 599 878 28 0 0 chr3LHet 1953736 1953842 -601649 - Gypsy7_I LTR Gypsy 0 4984 4879 4 599 707 79 0 45 chr3LHet 1953984 1954116 -601375 - Gypsy7_I LTR Gypsy -109 4875 4750 4 599 19954 60 64 20 chr3LHet 1954095 1957047 -598444 - Gypsy7_I LTR Gypsy -563 4421 1342 4 599 8122 45 50 42 chr3LHet 1957040 1958259 -597232 - Gypsy7_I LTR Gypsy -3755 1229 1 4 599 1761 76 0 12 chr3LHet 1958259 1958512 -596979 - Gypsy7_LTR LTR Gypsy 0 251 2 4 599 1110 41 0 299 chr3LHet 1958512 1958823 -596668 - Gypsy7_I LTR Gypsy 0 4984 4767 4 599 9518 53 87 23 chr3LHet 1958849 1960264 -595227 - Gypsy7_I LTR Gypsy -566 4418 2914 4 599 35058 3 1 0 chr3LHet 1960270 1964369 -591122 - DOC LINE Jockey 0 4725 625 4 599 10392 67 41 22 chr3LHet 1964375 1965924 -589567 - Gypsy7_I LTR Gypsy -2064 2920 1342 4 74 8552 47 21 41 chr3LHet 1965917 1967170 -588321 - Gypsy7_I LTR Gypsy -3755 1229 1 4 600 1761 76 0 12 chr3LHet 1967170 1967423 -588068 - Gypsy7_LTR LTR Gypsy 0 251 2 4 600 598 55 165 0 chr3LHet 1967423 1967514 -587977 - Gypsy7_I LTR Gypsy 0 4984 4879 4 600 707 79 0 45 chr3LHet 1967609 1967741 -587750 - Gypsy7_I LTR Gypsy -109 4875 4750 4 600 20040 59 64 20 chr3LHet 1967720 1970672 -584819 - Gypsy7_I LTR Gypsy -563 4421 1342 4 600 8585 47 21 41 chr3LHet 1970665 1971919 -583572 - Gypsy7_I LTR Gypsy -3755 1229 1 4 600 1761 76 0 12 chr3LHet 1971919 1972172 -583319 - Gypsy7_LTR LTR Gypsy 0 251 2 4 600 878 28 0 0 chr3LHet 1972172 1972278 -583213 - Gypsy7_I LTR Gypsy 0 4984 4879 4 600 707 79 0 45 chr3LHet 1972373 1972505 -582986 - Gypsy7_I LTR Gypsy -109 4875 4750 4 600 20014 60 63 20 chr3LHet 1972484 1975437 -580054 - Gypsy7_I LTR Gypsy -563 4421 1342 4 600 8640 45 21 41 chr3LHet 1975430 1976684 -578807 - Gypsy7_I LTR Gypsy -3755 1229 1 4 600 1547 72 67 13 chr3LHet 1976684 1976922 -578569 - Gypsy7_LTR LTR Gypsy 0 251 1 4 600 709 217 43 63 chr3LHet 1976936 1977237 -578254 - TIRANT_I LTR Gypsy -6830 862 445 4 600 347 125 16 0 chr3LHet 1977483 1977547 -577944 - TIRANT_LTR LTR Gypsy -352 65 1 4 600 1074 199 73 13 chr3LHet 1977549 1977865 -577626 + BEL_LTR LTR Pao 27 361 0 4 600 22 35 0 0 chr3LHet 1978756 1978785 -576706 + AT_rich Low_complexity Low_complexity 1 29 0 4 600 232 51 32 48 chr3LHet 1978809 1978871 -576620 + (TTATA)n Simple_repeat Simple_repeat 4 64 0 4 600 2693 45 5 16 chr3LHet 1979227 1979607 -575884 + LOOPER1_DM DNA PiggyBac 1506 1881 0 4 600 518 220 113 60 chr3LHet 1980308 1980608 -574883 - NINJA_LTR LTR Pao -1 316 1 4 600 1035 138 33 0 chr3LHet 1980608 1980789 -574702 - NINJA_I LTR Pao 0 6011 5825 4 600 2499 81 62 3 chr3LHet 1980794 1981165 -574326 - NINJA_I LTR Pao -313 5698 5306 4 600 9214 93 41 3 chr3LHet 1981168 1982604 -572887 - NINJA_I LTR Pao -1040 4971 3146 4 600 273 0 0 0 chr3LHet 1982612 1982644 -572847 - NINJA_I LTR Pao -3204 2807 2776 4 600 2025 129 118 0 chr3LHet 1982642 1983101 -572390 - NINJA_I LTR Pao -3337 2674 2162 4 600 1191 287 14 6 chr3LHet 1983785 1984142 -571349 + Gypsy4_I LTR Gypsy 2530 2889 -3399 4 600 13830 53 25 11 chr3LHet 1984141 1986008 -569483 - DMCR1A LINE CR1 -2571 1899 7 4 600 676 250 75 0 chr3LHet 1986010 1986198 -569293 + Gypsy4_I LTR Gypsy 2906 3107 -3181 4 600 1125 254 130 20 chr3LHet 1986200 1986738 -568753 + Gypsy4_I LTR Gypsy 3351 3947 -2341 4 600 238 338 40 47 chr3LHet 1986740 1986889 -568602 + BURDOCK_I LTR Gypsy 4401 4548 -1312 4 600 23 0 0 0 chr3LHet 1986889 1986912 -568579 + AT_rich Low_complexity Low_complexity 1 23 0 4 600 2879 3 0 0 chr3LHet 1986912 1987242 -568249 + TRANSPAC_LTR LTR Gypsy 1 330 0 4 600 38684 2 0 0 chr3LHet 1987242 1991831 -563660 + TRANSPAC_I LTR Gypsy 1 4590 0 4 600 2853 6 0 0 chr3LHet 1991830 1992160 -563331 + TRANSPAC_LTR LTR Gypsy 1 330 0 4 600 22 35 0 0 chr3LHet 1992399 1992428 -563063 + AT_rich Low_complexity Low_complexity 1 29 0 4 600 532 45 0 0 chr3LHet 1992572 1992638 -562853 - DNAREP1_DM LINE Penelope -527 67 2 4 600 255 79 0 0 chr3LHet 1992636 1992674 -562817 - DNAREP1_DM LINE Penelope 0 594 557 4 600 263 323 0 0 chr3LHet 1993069 1993165 -562326 - LINEJ1_DM LINE Jockey -2350 2670 2575 4 600 29 47 0 0 chr3LHet 1993310 1993353 -562138 + AT_rich Low_complexity Low_complexity 1 43 0 4 600 6424 43 8 2 chr3LHet 1993696 1994542 -560949 + TC1-2_DM DNA Tc1 1 851 -793 4 600 377 183 10 61 chr3LHet 1994544 1994643 -560848 - DNAREP1_DM LINE Penelope -500 94 1 4 600 533 219 7 46 chr3LHet 1994688 1994841 -560650 + Gypsy2_LTR LTR Gypsy 1 147 -206 4 600 5133 289 62 17 chr3LHet 1994853 1997783 -557708 + Gypsy6_I LTR Gypsy 332 3442 -3570 4 600 4726 169 6 2 chr3LHet 1997787 1998628 -556863 + Gypsy2_I LTR Gypsy 2791 3634 -2501 4 600 2786 226 159 21 chr3LHet 1998633 1999533 -555958 + Gypsy2_I LTR Gypsy 4439 5462 -673 4 600 8294 38 1 2 chr3LHet 2001555 2002547 -552944 + TC1-2_DM DNA Tc1 1 991 -653 4 600 4146 22 40 4 chr3LHet 2002547 2003050 -552441 + TC1-2_DM DNA Tc1 1124 1644 0 4 600 2394 101 149 23 chr3LHet 2003821 2004455 -551036 + DNAREP1_DM LINE Penelope 10 594 0 4 600 50 18 0 0 chr3LHet 2004530 2004587 -550904 + AT_rich Low_complexity Low_complexity 1 57 0 4 600 322 91 0 0 chr3LHet 2004896 2004940 -550551 - DNAREP1_DM LINE Penelope -1 593 550 4 600 225 209 0 0 chr3LHet 2004936 2004979 -550512 - DNAREP1_DM LINE Penelope -202 392 350 4 600 1492 316 38 31 chr3LHet 2006527 2007180 -548311 + NINJA_I LTR Pao 954 1611 -4400 4 600 8901 310 43 15 chr3LHet 2007266 2011101 -544390 + NINJA_I LTR Pao 2066 6011 0 4 600 27 0 0 0 chr3LHet 2011507 2011534 -543957 + AT_rich Low_complexity Low_complexity 1 27 0 4 600 348 96 0 71 chr3LHet 2011534 2011590 -543901 - PROTOP_B DNA P -9 1144 1093 4 600 846 21 0 0 chr3LHet 2011776 2011871 -543620 - DNAREP1_DM LINE Penelope 0 594 500 4 600 2424 25 3 37 chr3LHet 2011872 2012169 -543322 + Gypsy4_LTR LTR Gypsy 1 287 0 4 600 21138 19 20 4 chr3LHet 2012169 2014626 -540865 + Gypsy4_I LTR Gypsy 1 2597 -3691 4 600 31128 15 9 0 chr3LHet 2014625 2018093 -537398 + Gypsy4_I LTR Gypsy 2791 6288 0 4 600 2351 18 10 44 chr3LHet 2018093 2018390 -537101 + Gypsy4_LTR LTR Gypsy 1 287 0 4 600 1090 104 115 6 chr3LHet 2018390 2018544 -536947 - DNAREP1_DM LINE Penelope -107 487 315 4 600 36 70 0 0 chr3LHet 2018900 2018971 -536520 + AT_rich Low_complexity Low_complexity 1 71 0 4 600 774 153 116 43 chr3LHet 2019221 2019456 -536035 - DNAREP1_DM LINE Penelope -267 327 88 4 600 43 20 0 0 chr3LHet 2021383 2021433 -534058 + AT_rich Low_complexity Low_complexity 1 50 0 4 600 25 83 0 0 chr3LHet 2023220 2023280 -532211 + AT_rich Low_complexity Low_complexity 1 60 0 4 600 32 103 0 0 chr3LHet 2023968 2024084 -531407 + AT_rich Low_complexity Low_complexity 1 116 0 4 600 339 156 112 20 chr3LHet 2024210 2024308 -531183 + Gypsy6_LTR LTR Gypsy 155 261 -146 4 600 28 0 0 0 chr3LHet 2024535 2024563 -530928 + AT_rich Low_complexity Low_complexity 1 28 0 4 600 371 83 132 53 chr3LHet 2024828 2024904 -530587 - DNAREP1_DM LINE Penelope -423 171 90 4 600 306 160 126 29 chr3LHet 2025512 2025615 -529876 - DNAREP1_DM LINE Penelope -273 321 209 4 600 644 81 0 0 chr3LHet 2026261 2026348 -529143 + STALKER4_LTR LTR Gypsy 1 87 -315 4 600 546 32 0 0 chr3LHet 2026365 2026427 -529064 + DMCR1A LINE CR1 4077 4138 -332 4 600 2450 60 26 38 chr3LHet 2027076 2027421 -528070 + DMCR1A LINE CR1 4130 4470 0 4 600 1982 75 38 31 chr3LHet 2027422 2027710 -527781 + STALKER4_LTR LTR Gypsy 84 373 -29 4 600 225 139 139 0 chr3LHet 2027747 2027783 -527708 + DM412 LTR Gypsy 291 331 -6566 4 600 2202 150 89 35 chr3LHet 2027884 2028492 -526999 + STALKER4_I LTR Gypsy 382 1086 -5444 4 600 1929 131 31 0 chr3LHet 2028505 2028825 -526666 + STALKER4_I LTR Gypsy 2990 3319 -3211 4 600 10847 47 71 7 chr3LHet 2028826 2030212 -525279 - Baggins1 LINE LOA -874 4579 3104 4 600 678 69 0 0 chr3LHet 2030228 2030315 -525176 + Invader2_LTR LTR Gypsy 1 87 -179 4 600 17251 11 6 1 chr3LHet 2030313 2032317 -523174 + Invader2_I LTR Gypsy 2579 4592 0 4 600 1790 30 144 17 chr3LHet 2032317 2032553 -522938 + Invader2_LTR LTR Gypsy 1 266 0 4 600 4979 48 51 0 chr3LHet 2032553 2033447 -522044 - Baggins1 LINE LOA -2450 3003 2064 4 600 9639 35 56 5 chr3LHet 2033445 2034646 -520845 - Baggins1 LINE LOA -4191 1262 1 4 600 1388 99 0 0 chr3LHet 2034638 2034829 -520662 + Stalker2_I LTR Gypsy 3867 4057 -3345 4 600 17040 84 32 5 chr3LHet 2034837 2037212 -518279 + STALKER4_I LTR Gypsy 3852 6289 -241 4 600 2859 140 107 30 chr3LHet 2037238 2037835 -517656 - QUASIMODO_LTR LTR Gypsy -15 643 1 4 600 263 211 0 17 chr3LHet 2037835 2037893 -517598 - QUASIMODO_I LTR Gypsy 0 6060 6004 4 600 368 249 27 27 chr3LHet 2037999 2038185 -517306 - QUASIMODO_I LTR Gypsy -561 5499 5314 4 600 2023 36 161 0 chr3LHet 2038186 2038460 -517031 + DOC3_DM LINE Jockey 972 1289 -3451 4 600 16832 47 60 8 chr3LHet 2038468 2042719 -512772 - DMCR1A LINE CR1 0 4470 1 4 600 1659 48 5 0 chr3LHet 2042731 2042937 -512554 + DOC3_DM LINE Jockey 1287 1493 -3247 4 600 12179 61 14 8 chr3LHet 2042935 2044493 -510998 + DOC3_DM LINE Jockey 1596 3161 -1579 4 600 1503 31 0 30 chr3LHet 2044390 2044587 -510904 - DMCR1A LINE CR1 -4279 191 1 4 600 42 48 0 0 chr3LHet 2044592 2044655 -510836 + AT_rich Low_complexity Low_complexity 1 63 0 4 600 259 160 60 0 chr3LHet 2044719 2044769 -510722 - DM297_LTR LTR Gypsy 0 414 362 4 600 549 73 0 0 chr3LHet 2044777 2044845 -510646 + DNAREP1_DM LINE Penelope 17 84 -510 4 600 343 26 0 0 chr3LHet 2045486 2045525 -509966 - DMCR1A LINE CR1 -864 3606 3568 4 600 29 84 0 0 chr3LHet 2045600 2045671 -509820 + AT_rich Low_complexity Low_complexity 1 71 0 4 600 264 342 8 8 chr3LHet 2046476 2046597 -508894 - Gypsy4_I LTR Gypsy -5322 966 846 4 600 30 27 0 0 chr3LHet 2046989 2047026 -508465 + AT_rich Low_complexity Low_complexity 1 37 0 4 600 1045 340 34 43 chr3LHet 2047318 2048364 -507127 + MICROPIA_I LTR Gypsy 59 1083 -3393 4 600 2473 48 6 25 chr3LHet 2048391 2048713 -506778 - NINJA_LTR LTR Pao -1 316 1 4 600 8094 28 62 2 chr3LHet 2048713 2049718 -505773 - NINJA_I LTR Pao 0 6011 4947 4 600 24362 25 0 21 chr3LHet 2049707 2052687 -502804 - NINJA_I LTR Pao -3092 2919 1 4 600 2476 51 6 25 chr3LHet 2052687 2053010 -502481 - NINJA_LTR LTR Pao 0 317 1 4 600 774 311 7 3 chr3LHet 2053256 2053553 -501938 + MICROPIA_I LTR Gypsy 1349 1646 -2830 4 600 4530 320 25 22 chr3LHet 2053548 2055666 -499825 + MICROPIA_I LTR Gypsy 1946 3894 -582 4 600 220 223 0 55 chr3LHet 2055889 2056017 -499474 + A-rich Low_complexity Low_complexity 5 125 0 4 600 2611 32 0 28 chr3LHet 2056851 2057174 -498317 - NINJA_LTR LTR Pao -3 314 1 4 600 5985 22 45 276 chr3LHet 2057174 2058559 -496932 - NINJA_I LTR Pao 0 6011 4947 4 600 11081 29 2 6 chr3LHet 2058548 2059859 -495632 - NINJA_I LTR Pao -3092 2919 1614 4 600 26543 33 17 6 chr3LHet 2059853 2063256 -492235 - NINJA_I LTR Pao -830 5181 1 4 600 2478 51 6 25 chr3LHet 2063256 2063579 -491912 - NINJA_LTR LTR Pao 0 317 1 4 600 767 311 7 3 chr3LHet 2063825 2064122 -491369 + MICROPIA_I LTR Gypsy 1349 1646 -2830 4 600 4437 314 29 26 chr3LHet 2064117 2066235 -489256 + MICROPIA_I LTR Gypsy 1946 3894 -582 4 600 220 223 0 55 chr3LHet 2066458 2066586 -488905 + A-rich Low_complexity Low_complexity 5 125 0 4 600 2583 35 3 25 chr3LHet 2067420 2067741 -487750 - NINJA_LTR LTR Pao -3 314 1 4 600 22 0 0 0 chr3LHet 2067858 2067880 -487611 + AT_rich Low_complexity Low_complexity 1 22 0 4 600 43812 3 0 0 chr3LHet 2067880 2072583 -482908 - BS2 LINE Jockey 0 4721 19 4 600 5670 312 38 31 chr3LHet 2072722 2075421 -480070 + MICROPIA_I LTR Gypsy 1349 3894 -582 4 600 226 239 14 28 chr3LHet 2075596 2075738 -479753 + GA-rich Low_complexity Low_complexity 1 140 0 4 600 2611 32 0 28 chr3LHet 2076559 2076882 -478609 - NINJA_LTR LTR Pao -3 314 1 4 600 4634 30 0 2 chr3LHet 2076882 2077426 -478065 - NINJA_I LTR Pao 0 6011 5469 4 600 9591 23 2 0 chr3LHet 2077426 2078529 -476962 + PROTOP_A DNA P 1 1105 0 4 600 29202 32 15 6 chr3LHet 2078529 2082229 -473262 - NINJA_I LTR Pao -536 5475 1 4 600 1664 62 5 5 chr3LHet 2082229 2082438 -473053 - NINJA_LTR LTR Pao 0 317 109 4 600 782 299 31 24 chr3LHet 2082543 2082958 -472533 + QUASIMODO_I LTR Gypsy 1204 1621 -4439 4 600 915 285 15 13 chr3LHet 2083025 2083371 -472120 + IDEFIX_I LTR Gypsy 1429 1737 -3891 4 600 3287 275 98 14 chr3LHet 2083379 2085070 -470421 + QUASIMODO_I LTR Gypsy 3609 5441 -619 4 600 24 0 0 0 chr3LHet 2085216 2085240 -470251 + AT_rich Low_complexity Low_complexity 1 24 0 4 600 601 180 0 0 chr3LHet 2085684 2085784 -469707 - NOMAD_I LTR Gypsy 0 6572 6473 4 600 332 160 0 0 chr3LHet 2085800 2085850 -469641 - NOMAD_I LTR Gypsy -491 6081 6032 4 600 5402 153 108 5 chr3LHet 2086546 2087621 -467870 - NOMAD_I LTR Gypsy -733 5839 4653 4 600 1144 167 86 4 chr3LHet 2087621 2087855 -467636 + Gypsy12A_LTR LTR Gypsy 1 253 -2027 4 600 770 201 119 13 chr3LHet 2087854 2088081 -467410 + Gypsy12A_LTR LTR Gypsy 518 768 -1512 4 600 3379 47 13 0 chr3LHet 2088082 2088607 -466884 - DMCR1A LINE CR1 0 4470 3909 4 600 11579 42 72 10 chr3LHet 2088607 2090206 -465285 - DMCR1A LINE CR1 -683 3787 2090 4 600 9497 22 2 8 chr3LHet 2090206 2091318 -464173 - PROTOP_A DNA P 0 1105 1 4 600 13546 34 34 5 chr3LHet 2091318 2092941 -462550 - DMCR1A LINE CR1 -2374 2096 427 4 600 32376 6 14 0 chr3LHet 2092938 2096488 -459003 - DMRT1A LINE R1 -2 5181 1582 4 9 11614 42 27 23 chr3LHet 2096485 2097959 -457532 + DIVER2_I LTR Pao 1312 2791 -1356 4 601 3270 22 0 0 chr3LHet 2097970 2098337 -457154 + DIVER2_I LTR Pao 3689 4055 -92 4 601 507 318 29 14 chr3LHet 2098371 2098649 -456842 - TV1I LTR Gypsy -5044 919 638 4 601 1966 169 16 75 chr3LHet 2098700 2099140 -456351 - Gypsy12A_LTR LTR Gypsy -835 1445 1032 4 601 347 133 65 26 chr3LHet 2099149 2099226 -456265 - Gypsy12A_LTR LTR Gypsy -1389 891 812 4 601 889 44 0 9 chr3LHet 2099236 2099350 -456141 - TC1_DM DNA Tc1 0 1666 1554 4 601 290 178 187 29 chr3LHet 2099357 2099496 -455995 - Gypsy12A_LTR LTR Gypsy -1482 798 638 4 601 2125 27 30 27 chr3LHet 2099497 2099760 -455731 + PROTOP DNA P 4 267 -4213 4 601 53 30 0 0 chr3LHet 2099877 2099944 -455547 + AT_rich Low_complexity Low_complexity 1 67 0 4 601 21 57 0 0 chr3LHet 2100097 2100132 -455359 + AT_rich Low_complexity Low_complexity 1 35 0 4 601 2578 327 72 53 chr3LHet 2100281 2102454 -453037 + HMSBEAGLE_I LTR Gypsy 1485 3699 -2830 4 601 3019 54 58 5 chr3LHet 2102594 2103017 -452474 + PROTOP DNA P 235 682 -3798 4 601 2832 64 8 3 chr3LHet 2103017 2103379 -452112 + Gypsy10_LTR LTR Gypsy 1 364 0 4 601 265 222 0 0 chr3LHet 2104368 2104422 -451069 + HMSBEAGLE_I LTR Gypsy 6476 6529 0 4 601 19431 7 16 9 chr3LHet 2104651 2106853 -448638 + Invader4_I LTR Gypsy 197 2413 0 4 601 3235 3 0 0 chr3LHet 2106853 2107199 -448292 + Invader4_LTR LTR Gypsy 1 346 0 4 601 442 66 0 0 chr3LHet 2107199 2107260 -448231 + STALKER4_LTR LTR Gypsy 259 319 -83 4 601 22 35 0 0 chr3LHet 2107273 2107302 -448189 + AT_rich Low_complexity Low_complexity 1 29 0 4 601 3788 5 2 0 chr3LHet 2107312 2107724 -447767 + Invader1_LTR LTR Gypsy 11 423 0 4 601 6453 75 6 7 chr3LHet 2107724 2109185 -446306 + Invader1_I LTR Gypsy 1 1571 -2528 4 601 3509 194 16 10 chr3LHet 2109176 2110210 -445281 + Invader1_I LTR Gypsy 1301 3051 -1048 4 601 12495 7 1 1 chr3LHet 2110212 2111581 -443910 + Invader1_I LTR Gypsy 1819 3186 0 4 601 2487 3 102 0 chr3LHet 2111581 2111926 -443565 + Invader1_LTR LTR Gypsy 1 380 -43 4 601 9355 65 9 2 chr3LHet 2111923 2113132 -442359 - IVK_DM LINE I -261 5141 3925 4 601 21 0 0 0 chr3LHet 2113132 2113153 -442338 + AT_rich Low_complexity Low_complexity 1 21 0 4 601 14007 59 77 25 chr3LHet 2113153 2116541 -438950 - IVK_DM LINE I -1836 3566 3 4 601 22 35 0 0 chr3LHet 2116596 2116625 -438866 + AT_rich Low_complexity Low_complexity 1 29 0 4 601 332 209 11 44 chr3LHet 2117051 2117141 -438350 - Gypsy8_LTR LTR Gypsy -119 185 99 4 601 854 177 178 19 chr3LHet 2117244 2117457 -438034 + Invader4_LTR LTR Gypsy 100 346 0 4 601 1666 86 76 22 chr3LHet 2117457 2117732 -437759 + Invader4_I LTR Gypsy 1 328 -2085 4 601 1177 44 13 6 chr3LHet 2117738 2117897 -437594 - FW2_DM LINE Jockey 0 3961 3802 4 601 1412 60 0 11 chr3LHet 2117897 2118083 -437408 - FW2_DM LINE Jockey -59 3902 3719 4 601 3965 69 111 5 chr3LHet 2118116 2118756 -436735 + M4DM DNA Transib 1 708 -727 4 601 2135 49 21 14 chr3LHet 2118754 2119044 -436447 + M4DM DNA Transib 833 1124 -311 4 601 3616 0 0 2 chr3LHet 2119070 2119473 -436018 - STALKER4_LTR LTR Gypsy 0 402 1 4 601 56313 11 1 2 chr3LHet 2119473 2126010 -429481 - STALKER4_I LTR Gypsy 0 6530 1 4 601 3616 0 0 2 chr3LHet 2126010 2126413 -429078 - STALKER4_LTR LTR Gypsy 0 402 1 4 601 2259 55 26 3 chr3LHet 2126413 2126722 -428769 + M4DM DNA Transib 1120 1435 0 4 601 9953 49 93 3 chr3LHet 2126722 2128062 -427429 - FW2_DM LINE Jockey -310 3651 2191 4 601 3948 63 23 8 chr3LHet 2128059 2128587 -426904 - FW2_DM LINE Jockey -3087 874 339 4 601 2099 320 44 27 chr3LHet 2128577 2129878 -425613 + MICROPIA_I LTR Gypsy 1428 3513 -963 4 601 1550 178 198 84 chr3LHet 2130341 2131078 -424413 + Invader4_I LTR Gypsy 1664 2560 -626 4 601 860 101 174 0 chr3LHet 2131078 2131216 -424275 + Invader4_LTR LTR Gypsy 1 162 -184 4 601 1133 88 5 0 chr3LHet 2131213 2131405 -424086 - S_DM DNA Tc1 -65 1671 1479 4 601 3612 44 122 0 chr3LHet 2131404 2132107 -423384 + DMCR1A LINE CR1 958 1746 -2724 4 601 6660 31 6 20 chr3LHet 2132122 2132952 -422539 + DMCR1A LINE CR1 3653 4470 0 4 601 521 239 13 25 chr3LHet 2132988 2133147 -422344 - QUASIMODO_LTR LTR Gypsy -69 589 433 4 601 4047 169 136 10 chr3LHet 2133149 2134026 -421465 - DMCR1A LINE CR1 -2290 2180 1194 4 601 924 235 155 3 chr3LHet 2134630 2134971 -420520 + Gypsy3_I LTR Gypsy 913 1305 -4872 4 601 708 61 10 0 chr3LHet 2135006 2135105 -420386 + PROTOP_A DNA P 196 295 -810 4 601 463 34 17 0 chr3LHet 2135146 2135205 -420286 + PROTOP_A DNA P 945 1005 -100 4 601 2335 258 57 5 chr3LHet 2135199 2135819 -419672 + Gypsy6_I LTR Gypsy 2210 2861 -4151 4 601 799 171 195 30 chr3LHet 2135828 2136040 -419451 + Gypsy3_I LTR Gypsy 2758 2993 -3184 4 601 245 57 0 79 chr3LHet 2136031 2136069 -419422 + Gypsy3_I LTR Gypsy 3322 3356 -2821 4 601 3239 184 117 50 chr3LHet 2136049 2136843 -418648 + Gypsy3_I LTR Gypsy 3473 4319 -1858 4 601 3680 26 2 0 chr3LHet 2136843 2137270 -418221 + ROO_LTR LTR Pao 1 428 0 4 601 66738 17 31 4 chr3LHet 2137270 2138336 -417155 + ROO_I LTR Pao 1 1162 -7094 4 601 198 0 0 0 chr3LHet 2138336 2138358 -417133 + (C)n Simple_repeat Simple_repeat 1 22 0 4 601 66738 17 31 4 chr3LHet 2138358 2145326 -410165 + ROO_I LTR Pao 1163 8255 -1 4 601 3743 19 2 0 chr3LHet 2145326 2145753 -409738 + ROO_LTR LTR Pao 1 428 0 4 601 1108 210 45 48 chr3LHet 2145763 2146053 -409438 + Gypsy3_I LTR Gypsy 4387 4675 -1502 4 601 16383 40 72 7 chr3LHet 2148180 2150814 -404677 - ROOA_I LTR Pao -2548 4301 1495 4 601 4569 44 2 2 chr3LHet 2150810 2151380 -404111 - ROOA_I LTR Pao -6183 666 11 4 601 2954 46 3 0 chr3LHet 2151385 2151753 -403738 - ROOA_LTR LTR Pao 0 386 18 4 601 400 202 32 48 chr3LHet 2151759 2151884 -403607 + M4DM DNA Transib 1 123 -1312 4 601 24 32 0 0 chr3LHet 2151905 2151936 -403555 + AT_rich Low_complexity Low_complexity 1 31 0 4 601 331 216 0 0 chr3LHet 2152009 2152083 -403408 + M4DM DNA Transib 331 404 -1031 4 601 249 266 61 61 chr3LHet 2152017 2152181 -403310 - TRANSIB2 DNA Transib -418 2426 2263 4 601 1423 138 71 66 chr3LHet 2152535 2152966 -402525 + DNAREP1_DM LINE Penelope 27 561 -33 4 601 236 185 29 58 chr3LHet 2153267 2153336 -402155 - TRANSIB4 DNA Transib -1050 1560 1494 4 601 363 264 9 0 chr3LHet 2154077 2154187 -401304 + M4DM DNA Transib 791 901 -534 4 601 5052 134 122 2 chr3LHet 2154262 2155251 -400240 - DOC LINE Jockey -709 4031 2873 4 601 1373 70 70 0 chr3LHet 2155255 2155440 -400051 - DOC LINE Jockey -2279 2446 2249 4 601 2573 210 109 117 chr3LHet 2155441 2156660 -398831 - DOC LINE Jockey -2702 2023 815 4 601 226 317 57 19 chr3LHet 2156736 2156842 -398649 - DIVER2_I LTR Pao -2577 1570 1461 4 601 850 141 13 0 chr3LHet 2156867 2157023 -398468 + DNAREP1_DM LINE Penelope 125 282 -312 4 601 1788 107 27 3 chr3LHet 2158155 2158447 -397044 + DNAREP1_DM LINE Penelope 1 299 -295 4 601 671 317 98 18 chr3LHet 2158482 2158929 -396562 + Copia2_I LTR Copia 1293 1775 -2387 4 601 391 329 6 13 chr3LHet 2158946 2159103 -396388 + DM1731_I LTR Copia 1733 1888 -2088 4 601 1578 329 8 7 chr3LHet 2159412 2160137 -395354 + Copia2_I LTR Copia 2449 3174 -988 4 601 248 0 31 0 chr3LHet 2160296 2160328 -395163 + (TAA)n Simple_repeat Simple_repeat 3 35 0 4 601 4130 193 27 31 chr3LHet 2160328 2162429 -393062 + SAR_DM Satellite Satellite 1 2093 -203 4 601 4263 202 49 59 chr3LHet 2162445 2166172 -389319 + SAR_DM Satellite Satellite 1 3690 -203 4 601 3873 199 67 31 chr3LHet 2166183 2167374 -388117 + SAR_DM Satellite Satellite 1 1233 -261 4 601 3897 209 43 52 chr3LHet 2167390 2170071 -385420 + SAR_DM Satellite Satellite 1 2657 -577 4 601 2421 169 25 15 chr3LHet 2170082 2170611 -384880 + SAR_DM Satellite Satellite 543 1076 -396 4 601 4030 175 12 18 chr3LHet 2170627 2171518 -383973 + SAR_DM Satellite Satellite 191 1076 -396 4 601 818 189 0 3 chr3LHet 2171529 2171819 -383672 + SAR_DM Satellite Satellite 1 289 -841 4 601 3965 174 14 19 chr3LHet 2171830 2172721 -382770 + SAR_DM Satellite Satellite 191 1076 -396 4 601 2262 195 21 9 chr3LHet 2172732 2173260 -382231 + SAR_DM Satellite Satellite 543 1076 -396 4 601 2390 178 17 11 chr3LHet 2173271 2174095 -381396 + SAR_DM Satellite Satellite 1 829 -841 4 601 2362 173 25 15 chr3LHet 2174106 2174635 -380856 + SAR_DM Satellite Satellite 543 1076 -396 4 601 3993 178 10 16 chr3LHet 2174651 2175542 -379949 + SAR_DM Satellite Satellite 191 1076 -396 4 601 2322 184 23 13 chr3LHet 2175553 2176082 -379409 + SAR_DM Satellite Satellite 543 1076 -396 4 601 818 189 0 3 chr3LHet 2176093 2176383 -379108 + SAR_DM Satellite Satellite 1 289 -841 4 601 3947 187 23 54 chr3LHet 2176394 2178364 -377127 + SAR_DM Satellite Satellite 1 1909 -203 4 601 2322 184 23 13 chr3LHet 2178375 2178904 -376587 + SAR_DM Satellite Satellite 543 1076 -396 4 601 3402 185 42 23 chr3LHet 2178915 2180063 -375428 + SAR_DM Satellite Satellite 1 1169 -841 4 601 957 171 0 0 chr3LHet 2180074 2180255 -375236 + SAR_DM Satellite Satellite 543 723 -749 4 601 2391 214 101 44 chr3LHet 2180369 2181887 -373604 + SAR_DM Satellite Satellite 1 1604 -396 4 601 1347 162 37 0 chr3LHet 2181899 2182171 -373320 + SAR_DM Satellite Satellite 533 814 -658 4 601 452 82 0 0 chr3LHet 2182207 2182268 -373223 + FB4_DM DNA Tc1 2 62 -4027 4 601 2010 122 85 133 chr3LHet 2182247 2182835 -372656 - FB4_DM DNA Tc1 -3357 732 173 4 601 4378 185 25 26 chr3LHet 2182844 2184438 -371053 + SAR_DM Satellite Satellite 1 1591 -678 4 601 2586 217 98 43 chr3LHet 2184454 2186026 -369465 + SAR_DM Satellite Satellite 1 1658 -396 4 601 1347 162 37 0 chr3LHet 2186038 2186310 -369181 + SAR_DM Satellite Satellite 533 814 -658 4 601 450 82 0 0 chr3LHet 2186346 2186407 -369084 + FB4_DM DNA Tc1 2 62 -4027 4 601 2010 122 85 133 chr3LHet 2186386 2186974 -368517 - FB4_DM DNA Tc1 -3357 732 173 4 601 2551 189 16 13 chr3LHet 2186983 2187601 -367890 + SAR_DM Satellite Satellite 457 1076 -396 4 601 2654 208 66 41 chr3LHet 2187617 2188918 -366573 + SAR_DM Satellite Satellite 1 1334 -396 4 601 483 167 52 0 chr3LHet 2188832 2188928 -366563 - XDMR Unknown Unknown 0 361 261 4 601 420 98 0 0 chr3LHet 2188962 2189023 -366468 + FB4_DM DNA Tc1 2 62 -4027 4 601 3204 106 120 61 chr3LHet 2189002 2189401 -366090 - FB4_DM DNA Tc1 -3357 732 322 4 601 199 0 31 31 chr3LHet 2189401 2189433 -366058 + (TAA)n Simple_repeat Simple_repeat 2 33 0 4 601 3204 106 120 61 chr3LHet 2189433 2189724 -365767 - FB4_DM DNA Tc1 -3768 321 1 4 601 1808 125 44 5 chr3LHet 2189726 2190054 -365437 + DNAREP1_DM LINE Penelope 123 445 -149 4 601 37 62 0 0 chr3LHet 2191686 2191751 -363740 + AT_rich Low_complexity Low_complexity 1 65 0 4 601 748 123 407 0 chr3LHet 2191966 2192203 -363288 - DNAREP1_DM LINE Penelope -2 592 258 4 601 502 27 187 0 chr3LHet 2192203 2192278 -363213 - DNAREP1_DM LINE Penelope 0 594 506 4 601 800 90 7 7 chr3LHet 2192282 2192428 -363063 + S_DM DNA Tc1 107 252 -1484 4 601 6123 108 39 6 chr3LHet 2192427 2193410 -362081 + S_DM DNA Tc1 720 1734 -2 4 601 1042 197 16 24 chr3LHet 2193424 2193679 -361812 - DNAREP1_DM LINE Penelope -252 342 90 4 601 227 246 46 0 chr3LHet 2193713 2193778 -361713 - G_DM LINE Jockey -412 3934 3867 4 601 1991 56 0 4 chr3LHet 2193924 2194174 -361317 - PROTOP DNA P -6 4474 4220 4 601 3030 66 266 1 chr3LHet 2194184 2194730 -360761 - PROTOP DNA P -371 4109 3444 4 601 768 86 80 1 chr3LHet 2194727 2194933 -360558 - PROTOP_B DNA P -3551 929 685 4 601 428 320 50 41 chr3LHet 2194988 2195307 -360184 - G2_DM LINE Jockey -1044 2058 1737 4 601 327 271 74 9 chr3LHet 2195758 2195866 -359625 - DMRT1C LINE R1 -1254 4189 4075 4 601 276 269 13 13 chr3LHet 2196319 2196398 -359093 - BS2 LINE Jockey -808 3913 3835 4 601 245 213 0 0 chr3LHet 2196536 2196598 -358893 - G_DM LINE Jockey -1021 3325 3282 4 601 488 322 11 5 chr3LHet 2196617 2196801 -358690 - BS2 LINE Jockey -1201 3520 3336 4 601 2117 57 0 0 chr3LHet 2197025 2197290 -358201 + DMCR1A LINE CR1 299 563 -3907 4 601 2856 3 0 0 chr3LHet 2197308 2197620 -357871 - BS2 LINE Jockey 0 4721 4410 4 601 5413 34 1 9 chr3LHet 2197642 2198319 -357172 - DMCR1A LINE CR1 -3766 704 33 4 601 33 0 0 0 chr3LHet 2198766 2198799 -356692 + AT_rich Low_complexity Low_complexity 1 33 0 4 601 1593 80 76 0 chr3LHet 2199145 2199382 -356109 + DMCR1A LINE CR1 4191 4445 -25 4 601 3057 75 76 46 chr3LHet 2199378 2199879 -355612 - Gypsy8_I LTR Gypsy -2554 1793 1278 4 601 5137 210 48 41 chr3LHet 2199876 2201539 -353952 - Gypsy8_I LTR Gypsy -4073 2580 228 4 601 1111 91 0 44 chr3LHet 2201652 2201835 -353656 - Gypsy8_I LTR Gypsy -4111 236 62 4 601 522 32 0 0 chr3LHet 2201881 2201944 -353547 - Gypsy8_LTR LTR Gypsy -240 64 2 4 601 466 340 12 12 chr3LHet 2201965 2202218 -353273 - DM1731_I LTR Copia -939 3037 2785 4 601 2421 8 0 0 chr3LHet 2202218 2202484 -353007 + DMLTR5 LTR Gypsy 1 266 0 4 601 6808 2 0 4 chr3LHet 2202483 2203282 -352209 + HMSBEAGLE_I LTR Gypsy 1 796 -5733 4 601 974 29 52 12 chr3LHet 2203282 2203454 -352037 + (TTA)n Simple_repeat Simple_repeat 1 179 0 4 601 50595 0 1 0 chr3LHet 2203454 2209012 -346479 + HMSBEAGLE_I LTR Gypsy 969 6529 0 4 601 2421 8 0 0 chr3LHet 2209012 2209278 -346213 + DMLTR5 LTR Gypsy 1 266 0 4 601 674 332 14 14 chr3LHet 2209278 2209571 -345920 - DM1731_I LTR Copia -1188 2788 2496 4 601 2390 317 33 45 chr3LHet 2209585 2211055 -344436 - DM1731_I LTR Copia -1623 2353 902 4 601 412 338 36 32 chr3LHet 2211368 2211677 -343814 - DM1731_I LTR Copia -3562 414 105 4 601 24 0 0 0 chr3LHet 2212288 2212312 -343179 + AT_rich Low_complexity Low_complexity 1 24 0 4 601 202 189 0 0 chr3LHet 2212471 2212508 -342983 + (CTTCG)n Simple_repeat Simple_repeat 2 38 0 4 601 311 71 0 0 chr3LHet 2213201 2213243 -342248 + DMCR1A LINE CR1 3989 4030 -440 4 601 490 118 0 0 chr3LHet 2213242 2213318 -342173 - DMCR1A LINE CR1 -663 3807 3732 4 601 1589 112 0 0 chr3LHet 2213316 2213539 -341952 - DMCR1A LINE CR1 -886 3584 3362 4 601 280 27 27 0 chr3LHet 2213534 2213571 -341920 - DMCR1A LINE CR1 -1390 3080 3043 4 601 6961 50 36 8 chr3LHet 2213572 2214463 -341028 - Baggins1 LINE LOA -86 5367 4452 4 601 1363 25 0 0 chr3LHet 2214449 2214606 -340885 + DOC2_DM LINE Jockey 4 160 -4633 4 601 38305 13 10 7 chr3LHet 2214605 2219065 -336426 + DOC2_DM LINE Jockey 322 4793 0 4 601 554 82 0 0 chr3LHet 2219082 2219155 -336336 - Baggins1 LINE LOA -1003 4450 4378 4 601 9671 49 42 0 chr3LHet 2219163 2220388 -335103 - Baggins1 LINE LOA -1418 4035 2759 4 601 3174 63 58 2 chr3LHet 2220386 2220815 -334676 - Baggins1 LINE LOA -2527 2926 2474 4 601 1110 86 132 16 chr3LHet 2220804 2220994 -334497 + G5A_DM LINE Jockey 2606 2817 -24 4 601 26 0 0 0 chr3LHet 2222907 2222933 -332558 + AT_rich Low_complexity Low_complexity 1 26 0 4 601 6325 57 91 0 chr3LHet 2223078 2223907 -331584 - Baggins1 LINE LOA -2320 3133 2230 4 601 1949 119 3 19 chr3LHet 2224100 2224408 -331083 - DMCR1A LINE CR1 -1791 2679 2377 4 601 3134 70 1 21 chr3LHet 2224408 2224850 -330641 + STALKER4_LTR LTR Gypsy 1 399 -3 4 601 28 48 0 0 chr3LHet 2224938 2224980 -330511 + AT_rich Low_complexity Low_complexity 1 42 0 4 75 23531 41 24 11 chr3LHet 2224987 2228227 -327264 + STALKER4_I LTR Gypsy 291 3620 -2910 4 75 15587 8 14 1 chr3LHet 2228210 2230060 -325431 + STALKER4_I LTR Gypsy 4658 6530 0 4 602 2278 15 0 0 chr3LHet 2230060 2230316 -325175 + STALKER4_LTR LTR Gypsy 1 256 -146 4 602 1875 78 25 67 chr3LHet 2230316 2230631 -324860 + Gypsy6A_LTR LTR Gypsy 1 302 -118 4 602 931 98 17 9 chr3LHet 2230683 2230829 -324662 + STALKER4_LTR LTR Gypsy 227 379 -23 4 602 2014 146 270 0 chr3LHet 2230876 2231320 -324171 - DMCR1A LINE CR1 -2102 2368 1805 4 602 623 53 0 0 chr3LHet 2231366 2231442 -324049 - DNAREP1_DM LINE Penelope 0 594 519 4 602 775 111 189 27 chr3LHet 2231774 2231922 -323569 - DNAREP1_DM LINE Penelope -106 488 317 4 602 360 276 7 7 chr3LHet 2231955 2232102 -323389 - Gypsy12_I LTR Gypsy -2728 2818 2718 4 602 2104 220 165 7 chr3LHet 2232128 2232690 -322801 - Gypsy12_I LTR Gypsy -3460 2086 1436 4 602 888 214 107 61 chr3LHet 2232699 2233132 -322359 - Gypsy12_I LTR Gypsy -4812 734 214 4 602 17206 17 19 2 chr3LHet 2233148 2235193 -320298 + TRANSIB1 DNA Transib 936 3014 0 4 602 9660 21 22 7 chr3LHet 2235193 2236363 -319128 - PROTOP DNA P -760 3720 2533 4 602 1636 14 9 44 chr3LHet 2236357 2236582 -318909 - PROTOP DNA P -3370 1110 894 4 602 333 0 0 0 chr3LHet 2236607 2236644 -318847 + (CATA)n Simple_repeat Simple_repeat 3 39 0 4 602 5786 25 35 3 chr3LHet 2236644 2237369 -318122 - PROTOP DNA P -3732 748 1 4 602 290 209 143 0 chr3LHet 2237833 2237924 -317567 - Gypsy8_I LTR Gypsy -4243 104 1 4 602 1129 127 148 8 chr3LHet 2237994 2238234 -317257 + MDG1_I LTR Gypsy 743 1118 -5478 4 602 393 125 97 9 chr3LHet 2238262 2238375 -317116 + MDG1_I LTR Gypsy 1120 1242 -5354 4 602 9383 16 10 0 chr3LHet 2238512 2239606 -315885 - PROTOP_A DNA P 0 1105 1 4 602 539 288 76 38 chr3LHet 2240188 2240528 -314963 - LINEJ1_DM LINE Jockey -1107 3913 3675 4 602 1339 228 58 0 chr3LHet 2240736 2241113 -314378 + GTWIN_I LTR Gypsy 678 1123 -5298 4 602 504 251 1 0 chr3LHet 2241152 2241285 -314206 + GTWIN_I LTR Gypsy 3921 4034 -2387 4 602 1230 162 119 0 chr3LHet 2241283 2241518 -313973 + GTWIN_I LTR Gypsy 4271 4533 -1888 4 602 249 303 0 10 chr3LHet 2241521 2241621 -313870 + Gypsy_I LTR Gypsy 5431 5529 -978 4 602 1362 105 160 0 chr3LHet 2241623 2241861 -313630 + DNAREP1_DM LINE Penelope 202 477 -117 4 602 25 0 0 0 chr3LHet 2242051 2242076 -313415 + AT_rich Low_complexity Low_complexity 1 25 0 4 602 243 79 0 0 chr3LHet 2244378 2244416 -311075 - DNAREP1_DM LINE Penelope -287 307 270 4 602 228 143 163 0 chr3LHet 2244410 2244459 -311032 - DNAREP1_DM LINE Penelope -501 93 37 4 602 11436 97 545 15 chr3LHet 2244673 2247347 -308144 - FB4_DM DNA Tc1 0 4089 1 4 602 776 213 148 0 chr3LHet 2248799 2249015 -306476 + DMCR1A LINE CR1 508 755 -3715 4 602 692 163 104 0 chr3LHet 2249045 2249180 -306311 - DNAREP1_DM LINE Penelope 0 594 446 4 602 4485 60 67 18 chr3LHet 2249217 2249893 -305598 - PROTOP DNA P -849 3631 2923 4 602 3625 40 147 0 chr3LHet 2249894 2250403 -305088 - PROTOP DNA P -3894 586 1 4 602 265 256 11 11 chr3LHet 2250407 2250494 -304997 + Gypsy7_I LTR Gypsy 1904 1990 -2994 4 602 405 276 0 0 chr3LHet 2250496 2250583 -304908 + BURDOCK_I LTR Gypsy 2248 2334 -3526 4 602 475 324 51 17 chr3LHet 2252040 2252335 -303156 + DOC LINE Jockey 658 962 -3763 4 602 274 248 168 25 chr3LHet 2252345 2252506 -302985 + DOC2_DM LINE Jockey 1086 1269 -3524 4 602 509 254 107 19 chr3LHet 2252536 2252741 -302750 + DOC LINE Jockey 1311 1533 -3192 4 602 4315 40 79 8 chr3LHet 2252749 2253344 -302147 - PROTOP_B DNA P -46 1107 471 4 602 490 132 56 9 chr3LHet 2253338 2253445 -302046 - DNAREP1_DM LINE Penelope -293 301 190 4 602 339 161 0 0 chr3LHet 2253634 2253690 -301801 + DNAREP1_DM LINE Penelope 539 594 0 4 602 22 0 0 0 chr3LHet 2254503 2254525 -300966 + AT_rich Low_complexity Low_complexity 1 22 0 4 602 995 126 130 156 chr3LHet 2255301 2255785 -299706 - DNAREP1_DM LINE Penelope 0 594 1 4 602 1939 120 97 19 chr3LHet 2255928 2256335 -299156 - PROTOP_A DNA P 0 1105 680 4 602 7589 128 108 6 chr3LHet 2256381 2257842 -297649 + FB4_DM DNA Tc1 1145 2755 -1334 4 602 236 98 0 68 chr3LHet 2257838 2257882 -297609 - PROTOP DNA P -3426 1054 1014 4 602 492 117 146 0 chr3LHet 2257886 2258023 -297468 - PROTOP DNA P -3782 698 541 4 602 1112 36 14 0 chr3LHet 2258015 2258154 -297337 - PROTOP_B DNA P -650 503 363 4 602 627 147 17 0 chr3LHet 2258154 2258331 -297160 + (TA)n Simple_repeat Simple_repeat 1 180 0 4 602 2493 52 48 23 chr3LHet 2258347 2258698 -296793 - PROTOP_B DNA P -793 360 1 4 602 1063 222 94 20 chr3LHet 2258702 2259001 -296490 + Gypsy7_I LTR Gypsy 1904 2224 -2760 4 602 509 271 213 20 chr3LHet 2260146 2260847 -294644 + DOC LINE Jockey 658 1533 -3192 4 602 4237 88 24 29 chr3LHet 2260855 2261733 -293758 - PROTOP_B DNA P -46 1107 183 4 602 46 0 0 0 chr3LHet 2261749 2261795 -293696 + AT_rich Low_complexity Low_complexity 1 46 0 4 602 6225 26 9 0 chr3LHet 2262287 2263050 -292441 - PROTOP_A DNA P -27 1078 309 4 602 1503 49 109 28 chr3LHet 2263047 2263258 -292233 - PROTOP_A DNA P -877 228 1 4 602 25 31 0 0 chr3LHet 2263340 2263372 -292119 + AT_rich Low_complexity Low_complexity 1 32 0 4 602 296 53 0 0 chr3LHet 2263640 2263678 -291813 - DNAREP1_DM LINE Penelope -235 359 322 4 602 612 123 28 0 chr3LHet 2263668 2263774 -291717 - DNAREP1_DM LINE Penelope -429 165 57 4 602 329 244 0 0 chr3LHet 2263780 2263870 -291621 + DMCR1A LINE CR1 2124 2213 -2257 4 602 2467 112 172 65 chr3LHet 2263874 2264410 -291081 - DNAREP1_DM LINE Penelope 0 594 2 4 602 1307 154 248 3 chr3LHet 2264408 2264707 -290784 - DNAREP1_DM LINE Penelope 0 594 223 4 602 543 153 294 5 chr3LHet 2264712 2264896 -290595 - DNAREP1_DM LINE Penelope -291 303 67 4 602 21 36 0 0 chr3LHet 2265426 2265454 -290037 + AT_rich Low_complexity Low_complexity 1 28 0 4 602 3008 255 57 12 chr3LHet 2265940 2266850 -288641 + G5_DM LINE Jockey 407 1357 -3499 4 602 3141 41 15 20 chr3LHet 2266850 2267249 -288242 + G5A_DM LINE Jockey 2445 2841 0 4 602 354 185 37 0 chr3LHet 2267476 2267557 -287934 - LINEJ1_DM LINE Jockey -39 4981 4898 4 602 522 146 107 0 chr3LHet 2267583 2267686 -287805 - LINEJ1_DM LINE Jockey -240 4780 4667 4 602 912 136 0 0 chr3LHet 2267695 2267835 -287656 - LINEJ1_DM LINE Jockey -495 4525 4386 4 602 3385 218 48 45 chr3LHet 2267875 2269124 -286367 - Gypsy2_I LTR Gypsy -3917 2260 1002 4 602 1116 190 139 23 chr3LHet 2269213 2269514 -285977 - Gypsy2_LTR LTR Gypsy -17 336 1 4 602 2196 202 153 8 chr3LHet 2269722 2270311 -285180 + Gypsy12_I LTR Gypsy 1696 2369 -3177 4 602 354 233 0 0 chr3LHet 2270312 2270385 -285106 + Gypsy12_I LTR Gypsy 2663 2735 -2811 4 602 3758 174 155 1 chr3LHet 2270385 2271126 -284365 + Gypsy12_I LTR Gypsy 2680 3534 -2012 4 602 235 158 0 0 chr3LHet 2271144 2271182 -284309 + Gypsy12_I LTR Gypsy 3901 3938 -1608 4 602 1731 196 16 56 chr3LHet 2271183 2271627 -283864 + Gypsy12_I LTR Gypsy 142 567 -4979 4 602 3117 175 132 27 chr3LHet 2271650 2272496 -282995 + Gypsy12_I LTR Gypsy 665 1599 -3947 4 602 677 211 0 7 chr3LHet 2272493 2272646 -282845 + Gypsy12_I LTR Gypsy 3533 3684 -1862 4 602 513 217 401 6 chr3LHet 2272682 2272869 -282622 + Gypsy12_I LTR Gypsy 4045 4305 -1241 4 602 1989 165 6 0 chr3LHet 2272849 2273183 -282308 + Gypsy12_I LTR Gypsy 4428 4763 -783 4 602 1783 169 228 7 chr3LHet 2273173 2273624 -281867 + Gypsy12_I LTR Gypsy 4996 5546 0 4 602 884 124 199 57 chr3LHet 2273626 2273937 -281554 + Gypsy12A_LTR LTR Gypsy 3 357 -1923 4 602 2072 151 88 81 chr3LHet 2273934 2274539 -280952 + Gypsy12A_LTR LTR Gypsy 484 1092 -1188 4 602 22 35 0 0 chr3LHet 2277964 2277993 -277498 + AT_rich Low_complexity Low_complexity 1 29 0 4 602 413 234 106 22 chr3LHet 2277994 2278173 -277318 + DNAREP1_DM LINE Penelope 6 199 -395 4 602 23 54 0 0 chr3LHet 2278173 2278210 -277281 + AT_rich Low_complexity Low_complexity 1 37 0 4 602 26 30 0 0 chr3LHet 2278280 2278313 -277178 + AT_rich Low_complexity Low_complexity 1 33 0 4 602 27 49 0 0 chr3LHet 2278349 2278390 -277101 + AT_rich Low_complexity Low_complexity 1 41 0 4 602 1760 180 60 61 chr3LHet 2278476 2279035 -276456 - DNAREP1_DM LINE Penelope -40 554 86 4 602 821 128 40 0 chr3LHet 2279086 2279235 -276256 - DNAREP1_DM LINE Penelope -439 155 1 4 602 589 68 104 0 chr3LHet 2280369 2280620 -274871 + (GTCTG)n Simple_repeat Simple_repeat 1 277 0 4 602 23 78 0 0 chr3LHet 2281252 2281303 -274188 + AT_rich Low_complexity Low_complexity 1 51 0 4 602 38 0 0 0 chr3LHet 2281951 2281989 -273502 + AT_rich Low_complexity Low_complexity 1 38 0 4 602 1217 92 11 0 chr3LHet 2283098 2283272 -272219 - Invader2_LTR LTR Gypsy 0 266 91 4 602 21 0 0 0 chr3LHet 2283403 2283424 -272067 + AT_rich Low_complexity Low_complexity 1 21 0 4 602 298 270 0 0 chr3LHet 2283780 2283854 -271637 - Gypsy7_I LTR Gypsy -1691 3293 3220 4 602 468 139 331 0 chr3LHet 2283962 2284104 -271387 - TLD2 Unknown Unknown -25 193 5 4 602 523 316 48 27 chr3LHet 2284024 2284497 -270994 - Gypsy4_I LTR Gypsy -4181 3341 2471 4 602 29 70 0 0 chr3LHet 2284597 2284654 -270837 + AT_rich Low_complexity Low_complexity 1 57 0 4 602 24 32 0 0 chr3LHet 2284825 2284856 -270635 + AT_rich Low_complexity Low_complexity 1 31 0 4 602 9158 43 38 1 chr3LHet 2285673 2286824 -268667 + DMCR1A LINE CR1 3174 4367 -103 4 602 3130 116 67 14 chr3LHet 2286845 2287389 -268102 + DOC4_DM LINE Jockey 2085 2545 -246 4 602 38 22 0 0 chr3LHet 2289375 2289420 -266071 + AT_rich Low_complexity Low_complexity 1 45 0 4 602 18829 20 6 0 chr3LHet 2289511 2291691 -263800 + FW_DM LINE Jockey 2 2195 -2497 4 602 16560 19 26 4 chr3LHet 2291690 2293664 -261827 + FW_DM LINE Jockey 2671 4688 -4 4 602 566 201 0 65 chr3LHet 2294166 2294336 -261155 - Gypsy8_I LTR Gypsy -4123 224 66 4 602 270 152 13 132 chr3LHet 2294443 2294519 -260972 - Gypsy8_LTR LTR Gypsy -237 67 1 4 602 397 235 36 73 chr3LHet 2294863 2295028 -260463 + MDG3_I LTR Gypsy 3179 3337 -1649 4 602 6387 76 114 24 chr3LHet 2295231 2296288 -259203 + PROTOP_B DNA P 1 1153 0 4 602 1461 198 70 86 chr3LHet 2296482 2296957 -258534 + DNAREP1_DM LINE Penelope 123 589 -5 4 602 1435 141 28 8 chr3LHet 2297156 2297406 -258085 - DMCR1A LINE CR1 -969 3501 3247 4 602 1195 126 87 5 chr3LHet 2297400 2297607 -257884 - DMCR1A LINE CR1 -1476 2994 2771 4 602 478 113 0 0 chr3LHet 2297611 2297682 -257809 - DMCR1A LINE CR1 -1874 2596 2526 4 602 282 174 70 102 chr3LHet 2297685 2297813 -257678 + BS LINE Jockey 36 159 -4967 4 602 345 375 35 37 chr3LHet 2297826 2298200 -257291 + BS LINE Jockey 465 837 -4289 4 602 333 169 39 0 chr3LHet 2298300 2298377 -257114 + BS LINE Jockey 973 1052 -4074 4 602 2146 308 94 53 chr3LHet 2298430 2300223 -255268 + BS LINE Jockey 1165 3030 -2096 4 602 789 239 107 11 chr3LHet 2300286 2300557 -254934 + BS LINE Jockey 3142 3438 -1688 4 602 1103 192 51 33 chr3LHet 2300616 2300891 -254600 - DMCR1A LINE CR1 -2065 2405 2126 4 602 39 50 0 0 chr3LHet 2302884 2302944 -252547 + AT_rich Low_complexity Low_complexity 1 60 0 4 602 566 201 0 65 chr3LHet 2303466 2303636 -251855 - Gypsy8_I LTR Gypsy -4123 224 66 4 602 394 235 36 73 chr3LHet 2304163 2304328 -251163 + MDG3_I LTR Gypsy 3179 3337 -1649 4 602 1275 84 217 20 chr3LHet 2304553 2304853 -250638 + PROTOP_B DNA P 7 365 -788 4 602 2260 18 0 78 chr3LHet 2304856 2305163 -250328 + DM176_LTR LTR Gypsy 1 283 -224 4 602 2080 28 16 0 chr3LHet 2305164 2305417 -250074 + DM176_LTR LTR Gypsy 251 507 0 4 602 3778 80 69 13 chr3LHet 2305419 2306151 -249340 + PROTOP_B DNA P 353 1153 0 4 602 1461 198 70 86 chr3LHet 2306345 2306820 -248671 + DNAREP1_DM LINE Penelope 123 589 -5 4 602 1435 141 28 8 chr3LHet 2307019 2307269 -248222 - DMCR1A LINE CR1 -969 3501 3247 4 602 1195 126 87 5 chr3LHet 2307263 2307470 -248021 - DMCR1A LINE CR1 -1476 2994 2771 4 602 478 113 0 0 chr3LHet 2307474 2307545 -247946 - DMCR1A LINE CR1 -1874 2596 2526 4 602 282 174 70 102 chr3LHet 2307548 2307676 -247815 + BS LINE Jockey 36 159 -4967 4 602 476 334 105 40 chr3LHet 2307689 2308241 -247250 + BS LINE Jockey 465 1052 -4074 4 602 1978 304 116 50 chr3LHet 2308294 2310045 -245446 + BS LINE Jockey 1165 3030 -2096 4 602 789 239 107 11 chr3LHet 2310108 2310379 -245112 + BS LINE Jockey 3142 3438 -1688 4 602 1103 192 51 33 chr3LHet 2310438 2310713 -244778 - DMCR1A LINE CR1 -2065 2405 2126 4 602 38 51 0 0 chr3LHet 2312742 2312801 -242690 + AT_rich Low_complexity Low_complexity 1 59 0 4 602 230 230 3 0 chr3LHet 2312825 2312893 -242598 + QUASIMODO_I LTR Gypsy 2376 2419 -3641 4 602 566 201 0 65 chr3LHet 2313357 2313527 -241964 - Gypsy8_I LTR Gypsy -4123 224 66 4 602 397 235 36 73 chr3LHet 2314054 2314219 -241272 + MDG3_I LTR Gypsy 3179 3337 -1649 4 602 1275 84 217 20 chr3LHet 2314444 2314744 -240747 + PROTOP_B DNA P 7 365 -788 4 602 2260 18 0 78 chr3LHet 2314747 2315054 -240437 + DM176_LTR LTR Gypsy 1 283 -224 4 602 2080 28 16 0 chr3LHet 2315055 2315308 -240183 + DM176_LTR LTR Gypsy 251 507 0 4 602 3778 97 66 24 chr3LHet 2315310 2316042 -239449 + PROTOP_B DNA P 355 1153 0 4 602 1410 130 133 208 chr3LHet 2316236 2316741 -238750 + DNAREP1_DM LINE Penelope 123 589 -5 4 602 1450 145 28 8 chr3LHet 2316940 2317190 -238301 - DMCR1A LINE CR1 -969 3501 3247 4 602 1195 126 87 5 chr3LHet 2317184 2317391 -238100 - DMCR1A LINE CR1 -1476 2994 2771 4 602 478 113 0 0 chr3LHet 2317395 2317466 -238025 - DMCR1A LINE CR1 -1874 2596 2526 4 602 282 174 70 102 chr3LHet 2317469 2317597 -237894 + BS LINE Jockey 36 159 -4967 4 602 476 334 105 40 chr3LHet 2317610 2318162 -237329 + BS LINE Jockey 465 1052 -4074 4 602 1978 304 116 50 chr3LHet 2318215 2319966 -235525 + BS LINE Jockey 1165 3030 -2096 4 602 789 239 107 11 chr3LHet 2320029 2320300 -235191 + BS LINE Jockey 3142 3438 -1688 4 602 1103 192 51 33 chr3LHet 2320359 2320634 -234857 - DMCR1A LINE CR1 -2065 2405 2126 4 602 38 51 0 0 chr3LHet 2322663 2322722 -232769 + AT_rich Low_complexity Low_complexity 1 59 0 4 602 230 230 3 0 chr3LHet 2322746 2322814 -232677 + QUASIMODO_I LTR Gypsy 2376 2419 -3641 4 602 566 201 0 65 chr3LHet 2323278 2323448 -232043 - Gypsy8_I LTR Gypsy -4123 224 66 4 602 397 235 36 73 chr3LHet 2323975 2324140 -231351 + MDG3_I LTR Gypsy 3179 3337 -1649 4 602 6513 76 106 24 chr3LHet 2324343 2325408 -230083 + PROTOP_B DNA P 1 1153 0 4 602 1461 198 70 86 chr3LHet 2325602 2326077 -229414 + DNAREP1_DM LINE Penelope 123 589 -5 4 602 1435 141 28 8 chr3LHet 2326276 2326526 -228965 - DMCR1A LINE CR1 -969 3501 3247 4 602 1195 126 87 5 chr3LHet 2326520 2326727 -228764 - DMCR1A LINE CR1 -1476 2994 2771 4 602 478 113 0 0 chr3LHet 2326731 2326802 -228689 - DMCR1A LINE CR1 -1874 2596 2526 4 602 282 174 70 102 chr3LHet 2326805 2326933 -228558 + BS LINE Jockey 36 159 -4967 4 602 345 375 35 37 chr3LHet 2326946 2327320 -228171 + BS LINE Jockey 465 837 -4289 4 602 278 184 53 0 chr3LHet 2327420 2327496 -227995 + BS LINE Jockey 973 1052 -4074 4 603 23255 4 0 3 chr3LHet 2373517 2376125 -179366 + DOC LINE Jockey 2119 4719 -6 4 603 1993 239 141 8 chr3LHet 2376120 2376772 -178719 + BS LINE Jockey 2060 2798 -2328 4 603 761 250 107 11 chr3LHet 2377022 2377293 -178198 + BS LINE Jockey 3142 3438 -1688 4 603 2323 165 30 24 chr3LHet 2377352 2377817 -177674 - DMCR1A LINE CR1 -2065 2405 1938 4 603 378 77 19 0 chr3LHet 2377832 2377884 -177607 + DOC4_DM LINE Jockey 2494 2546 -245 4 603 37 52 0 0 chr3LHet 2379948 2380006 -175485 + AT_rich Low_complexity Low_complexity 1 58 0 4 603 13980 11 30 1 chr3LHet 2380044 2381694 -173797 + ROO_I LTR Pao 4410 6108 -2148 4 603 13719 19 0 2 chr3LHet 2381694 2383327 -172164 + ROO_I LTR Pao 6628 8256 0 4 603 3674 28 2 0 chr3LHet 2383327 2383754 -171737 + ROO_LTR LTR Pao 1 428 0 4 603 9159 40 18 7 chr3LHet 2384162 2385307 -170184 - IVK_DM LINE I 0 5402 4245 4 603 564 0 0 0 chr3LHet 2385307 2385370 -170121 + FB4_DM DNA Tc1 1 63 -4026 4 603 4501 25 5 11 chr3LHet 2385368 2385934 -169557 + FB4_DM DNA Tc1 3527 4089 0 4 603 6201 32 30 0 chr3LHet 2385934 2386689 -168802 - IVK_DM LINE I -1149 4253 3476 4 603 9166 85 35 36 chr3LHet 2386688 2388135 -167356 + CIRCE LINE Composite 3516 4960 -1396 4 603 19362 95 45 57 chr3LHet 2388149 2391546 -163945 - IVK_DM LINE I -2044 3358 1 4 603 22 0 0 0 chr3LHet 2392042 2392064 -163427 + AT_rich Low_complexity Low_complexity 1 22 0 4 603 42 86 0 0 chr3LHet 2392895 2393000 -162491 + AT_rich Low_complexity Low_complexity 1 105 0 4 603 21 36 0 0 chr3LHet 2393275 2393303 -162188 + AT_rich Low_complexity Low_complexity 1 28 0 4 603 9437 123 54 31 chr3LHet 2393358 2395055 -160436 + S_DM DNA Tc1 1 1736 0 4 603 1559 161 191 2 chr3LHet 2395399 2395829 -159662 - PROTOP DNA P -475 4005 3495 4 603 34 24 0 0 chr3LHet 2395879 2395920 -159571 + AT_rich Low_complexity Low_complexity 1 41 0 4 603 1068 163 201 28 chr3LHet 2395920 2396530 -158961 - PROTOP DNA P -3463 1017 256 4 603 30 27 0 0 chr3LHet 2396530 2396567 -158924 + AT_rich Low_complexity Low_complexity 1 37 0 4 603 970 157 98 9 chr3LHet 2396829 2397201 -158290 - DNAREP1_DM LINE Penelope -2 592 20 4 603 345 206 28 38 chr3LHet 2399351 2399457 -156034 + DNAREP1_DM LINE Penelope 98 202 -392 4 603 1149 190 58 12 chr3LHet 2399501 2399741 -155750 + DNAREP1_DM LINE Penelope 324 574 -20 4 603 366 27 0 9 chr3LHet 2399741 2399806 -155685 - PROTOP_B DNA P 0 1153 1046 4 603 28 61 0 0 chr3LHet 2399849 2399898 -155593 + AT_rich Low_complexity Low_complexity 1 49 0 4 603 285 177 0 46 chr3LHet 2400640 2400705 -154786 - Gypsy2_LTR LTR Gypsy -180 173 112 4 603 453 301 9 9 chr3LHet 2400794 2401034 -154457 - Gypsy2_I LTR Gypsy -17 6160 5919 4 603 8112 215 70 37 chr3LHet 2401034 2402971 -152520 - Gypsy2_I LTR Gypsy -455 5680 3679 4 603 953 191 6 6 chr3LHet 2402960 2403134 -152357 - Gypsy2_I LTR Gypsy -3267 2868 2695 4 603 2631 284 46 8 chr3LHet 2403165 2404029 -151462 - Gypsy6_I LTR Gypsy -4026 2986 2090 4 603 875 260 82 0 chr3LHet 2404078 2404297 -151194 - Gypsy2_I LTR Gypsy -4595 1540 1304 4 603 1228 248 120 44 chr3LHet 2404307 2404847 -150644 - Gypsy2_I LTR Gypsy -5263 872 292 4 603 424 134 0 0 chr3LHet 2405072 2405139 -150352 + DMCR1A LINE CR1 2 68 -4402 4 603 13040 38 82 1 chr3LHet 2405138 2408583 -146908 + DMCR1A LINE CR1 736 4460 -10 4 603 602 93 144 0 chr3LHet 2409143 2409240 -146251 + DNAREP1_DM LINE Penelope 455 565 -29 4 603 26 50 0 0 chr3LHet 2410166 2410206 -145285 + AT_rich Low_complexity Low_complexity 1 40 0 4 603 230 108 27 0 chr3LHet 2410299 2410336 -145155 - PROTOP_B DNA P -607 546 509 4 603 3669 104 38 2 chr3LHet 2410556 2411143 -144348 + S_DM DNA Tc1 1 608 -1128 4 603 1532 65 5 0 chr3LHet 2411132 2411332 -144159 + S_DM DNA Tc1 715 915 -821 4 603 2524 106 17 0 chr3LHet 2411323 2411737 -143754 + S_DM DNA Tc1 1316 1736 0 4 603 1095 155 81 42 chr3LHet 2411929 2412165 -143326 - DNAREP1_DM LINE Penelope -3 591 347 4 603 6061 59 20 15 chr3LHet 2412148 2412939 -142552 + G5_DM LINE Jockey 4050 4844 -12 4 603 529 47 0 0 chr3LHet 2412968 2413032 -142459 - DNAREP1_DM LINE Penelope -529 65 2 4 603 1774 206 179 0 chr3LHet 2413055 2413590 -141901 - DM297_I LTR Gypsy -4291 1876 1246 4 603 303 143 0 0 chr3LHet 2413608 2413664 -141827 - DM297_I LTR Gypsy -5009 1158 1103 4 603 331 94 0 0 chr3LHet 2413663 2413716 -141775 - DM297_I LTR Gypsy -5273 894 842 4 603 1156 220 173 58 chr3LHet 2413727 2414370 -141121 - DM297_I LTR Gypsy -5450 717 1 4 603 353 217 172 16 chr3LHet 2414370 2414492 -140999 - DM297_LTR LTR Gypsy 0 414 274 4 603 1002 346 36 6 chr3LHet 2415791 2416317 -139174 - HMSBEAGLE_I LTR Gypsy -4538 1991 1450 4 603 32 95 0 0 chr3LHet 2416432 2416527 -138964 + AT_rich Low_complexity Low_complexity 1 95 0 4 603 7698 45 53 29 chr3LHet 2416684 2417771 -137720 - PROTOP_B DNA P -39 1114 1 4 603 1367 59 230 5 chr3LHet 2418677 2418898 -136593 - DNAREP1_DM LINE Penelope 0 594 324 4 603 5821 15 0 1 chr3LHet 2418898 2419578 -135913 - PROTOP DNA P 0 4480 3802 4 603 5976 33 30 42 chr3LHet 2419573 2419645 -135846 - PROTOP DNA P -3657 823 781 4 603 570 53 32 0 chr3LHet 2419645 2419740 -135751 + (TA)n Simple_repeat Simple_repeat 1 98 0 4 603 5976 33 30 42 chr3LHet 2419740 2420500 -134991 - PROTOP DNA P -3700 780 1 4 603 996 153 10 15 chr3LHet 2420500 2420705 -134786 - DNAREP1_DM LINE Penelope -264 330 127 4 603 204 200 0 0 chr3LHet 2420706 2420756 -134735 + (TAG)n Simple_repeat Simple_repeat 1 50 0 4 603 342 88 0 34 chr3LHet 2420757 2420816 -134675 - DNAREP1_DM LINE Penelope -352 242 186 4 603 628 185 219 28 chr3LHet 2422449 2422627 -132864 + DNAREP1_DM LINE Penelope 337 548 -46 4 603 1082 123 192 98 chr3LHet 2422877 2423308 -132183 + DNAREP1_DM LINE Penelope 58 395 -199 4 603 21 0 0 0 chr3LHet 2423341 2423362 -132129 + AT_rich Low_complexity Low_complexity 1 21 0 4 603 1767 139 152 0 chr3LHet 2423835 2424308 -131183 + FB4_DM DNA Tc1 1112 1656 -2433 4 603 249 32 0 0 chr3LHet 2424308 2424339 -131152 - FB4_DM DNA Tc1 0 4089 4059 4 603 415 139 0 0 chr3LHet 2424355 2424427 -131064 - PROTOP DNA P -3399 1081 1010 4 603 2824 77 205 28 chr3LHet 2424429 2425027 -130464 - PROTOP DNA P -3773 707 1 4 603 2143 267 26 9 chr3LHet 2425027 2425602 -129889 + Invader3_I LTR Gypsy 13 597 -4291 4 603 535 55 0 0 chr3LHet 2425602 2425674 -129817 + TRANSIB2 DNA Transib 2 73 -2771 4 603 3736 19 2 0 chr3LHet 2425674 2426101 -129390 - ROO_LTR LTR Pao 0 428 1 4 603 11739 71 109 47 chr3LHet 2426102 2428402 -127089 + TRANSIB2 DNA Transib 70 2512 -332 4 603 1155 203 0 89 chr3LHet 2428430 2428689 -126802 + Invader3_I LTR Gypsy 629 864 -4024 4 603 730 216 65 0 chr3LHet 2428688 2428841 -126650 + Invader3_I LTR Gypsy 762 924 -3964 4 603 470 205 9 35 chr3LHet 2428849 2428965 -126526 - PROTOP_B DNA P -168 985 873 4 603 54 68 0 0 chr3LHet 2429056 2429159 -126332 + AT_rich Low_complexity Low_complexity 1 103 0 4 603 564 126 103 75 chr3LHet 2429185 2429331 -126160 - PROTOP_B DNA P -656 497 348 4 603 3806 330 45 42 chr3LHet 2429682 2432691 -122800 + Invader6_I LTR Gypsy 1 3021 -1078 4 603 427 292 0 8 chr3LHet 2432685 2432816 -122675 + Invader1_I LTR Gypsy 1526 1655 -1531 4 603 456 224 122 34 chr3LHet 2432831 2432979 -122512 + MICROPIA_I LTR Gypsy 3145 3305 -1171 4 603 514 125 108 79 chr3LHet 2432972 2433111 -122380 - PROTOP_B DNA P -663 490 348 4 603 3808 328 46 42 chr3LHet 2433462 2436471 -119020 + Invader6_I LTR Gypsy 1 3021 -1078 4 603 445 285 0 8 chr3LHet 2436465 2436596 -118895 + Invader1_I LTR Gypsy 1526 1655 -1531 4 603 441 232 128 40 chr3LHet 2436611 2436759 -118732 + MICROPIA_I LTR Gypsy 3145 3305 -1171 4 603 498 130 154 54 chr3LHet 2436752 2436882 -118609 - PROTOP_B DNA P -663 490 348 4 603 3829 329 45 42 chr3LHet 2437233 2440242 -115249 + Invader6_I LTR Gypsy 1 3021 -1078 4 603 445 285 0 8 chr3LHet 2440236 2440367 -115124 + Invader1_I LTR Gypsy 1526 1655 -1531 4 603 441 232 128 40 chr3LHet 2440382 2440530 -114961 + MICROPIA_I LTR Gypsy 3145 3305 -1171 4 603 514 125 108 79 chr3LHet 2440523 2440662 -114829 - PROTOP_B DNA P -663 490 348 4 603 3806 327 45 40 chr3LHet 2441013 2444883 -110608 + Invader6_I LTR Gypsy 1 3876 -600 4 603 228 114 0 0 chr3LHet 2445482 2445517 -109974 + Invader1_I LTR Gypsy 3152 3186 0 4 603 247 150 0 0 chr3LHet 2445883 2445943 -109548 - PROTOP_B DNA P -800 353 294 4 603 640 123 53 0 chr3LHet 2445969 2446083 -109408 - Invader3_I LTR Gypsy -1095 3793 3674 4 603 792 300 22 11 chr3LHet 2446080 2446356 -109135 + G5_DM LINE Jockey 3611 3889 -967 4 603 233 159 0 0 chr3LHet 2446398 2446442 -109049 + G5A_DM LINE Jockey 2033 2076 -765 4 603 278 139 25 89 chr3LHet 2446537 2446616 -108875 - Gypsy_LTR LTR Gypsy -110 372 299 4 603 425 144 86 32 chr3LHet 2446677 2446770 -108721 - Gypsy_LTR LTR Gypsy -384 98 1 4 603 54 49 0 0 chr3LHet 2446776 2446858 -108633 + AT_rich Low_complexity Low_complexity 1 82 0 4 603 11132 41 68 4 chr3LHet 2446858 2449255 -106236 - Baggins1 LINE LOA 0 5453 2903 4 603 23 0 0 0 chr3LHet 2449257 2449280 -106211 + AT_rich Low_complexity Low_complexity 1 23 0 4 603 6326 25 11 2 chr3LHet 2449561 2450370 -105121 + M4DM DNA Transib 1 816 -619 4 603 2415 27 0 0 chr3LHet 2450380 2450680 -104811 + M4DM DNA Transib 1136 1435 0 4 603 4179 50 53 2 chr3LHet 2451226 2451791 -103700 - DMCR1A LINE CR1 0 4470 3877 4 603 297 265 71 10 chr3LHet 2452013 2452211 -103280 - QUASIMODO_I LTR Gypsy 0 6060 5851 4 603 2795 279 42 11 chr3LHet 2452252 2453596 -101895 - QUASIMODO_I LTR Gypsy -307 5753 4368 4 603 314 93 0 0 chr3LHet 2454564 2454607 -100884 - DNAREP1_DM LINE Penelope -158 436 394 4 603 279 235 86 0 chr3LHet 2454742 2454823 -100668 + DNAREP1_DM LINE Penelope 507 594 0 4 603 38 22 0 0 chr3LHet 2454885 2454930 -100561 + AT_rich Low_complexity Low_complexity 1 45 0 4 603 1398 215 109 23 chr3LHet 2455377 2455853 -99638 - DNAREP1_DM LINE Penelope 0 594 78 4 603 2530 35 9 0 chr3LHet 2455901 2456218 -99273 + PROTOP_B DNA P 834 1153 0 4 603 1599 263 69 98 chr3LHet 2456242 2457225 -98266 - Gypsy7_I LTR Gypsy -3107 1877 1004 4 603 308 141 83 14 chr3LHet 2457573 2457645 -97846 - DM297_LTR LTR Gypsy -56 358 282 4 603 1812 250 120 23 chr3LHet 2457888 2460181 -95310 - DM297_I LTR Gypsy -19 6148 3633 4 603 269 168 192 40 chr3LHet 2460443 2460542 -94949 - Invader3_I LTR Gypsy -2127 2761 2648 4 603 227 282 16 33 chr3LHet 2460528 2460649 -94842 - Gypsy_I LTR Gypsy -1543 4964 4846 4 603 231 326 17 17 chr3LHet 2460727 2460902 -94589 - BURDOCK_I LTR Gypsy -1260 4600 4426 4 603 866 75 172 0 chr3LHet 2460952 2461086 -94405 - DNAREP1_DM LINE Penelope 0 594 438 4 603 244 150 25 0 chr3LHet 2461108 2461188 -94303 + (TA)n Simple_repeat Simple_repeat 2 83 0 4 603 439 150 70 17 chr3LHet 2461188 2461303 -94188 - DNAREP1_DM LINE Penelope -336 258 138 4 603 256 228 0 0 chr3LHet 2461743 2461800 -93691 - Jockey2 LINE Jockey -1719 1709 1653 4 603 423 122 12 0 chr3LHet 2462677 2462759 -92732 - DNAREP1_DM LINE Penelope -433 161 79 4 603 600 207 59 13 chr3LHet 2463176 2463328 -92163 - DMLTR5 LTR Gypsy -6 260 102 4 603 620 157 0 0 chr3LHet 2463492 2463600 -91891 - HMSBEAGLE_I LTR Gypsy 0 6529 6422 4 603 296 71 0 0 chr3LHet 2463702 2463744 -91747 - HMSBEAGLE_I LTR Gypsy -124 6405 6364 4 603 1488 211 74 112 chr3LHet 2463999 2464580 -90911 - HMSBEAGLE_I LTR Gypsy -161 6368 5810 4 603 23662 140 26 11 chr3LHet 2464957 2468984 -86507 - HMSBEAGLE_I LTR Gypsy -880 5649 1562 4 603 511 212 0 0 chr3LHet 2468974 2469073 -86418 - HMSBEAGLE_I LTR Gypsy -5219 1310 1212 4 603 52 30 0 0 chr3LHet 2469240 2469306 -86185 + AT_rich Low_complexity Low_complexity 1 66 0 4 603 1674 115 79 65 chr3LHet 2469325 2469679 -85812 - HMSBEAGLE_I LTR Gypsy -6170 359 1 4 603 368 161 0 58 chr3LHet 2469696 2469782 -85709 - DMLTR5 LTR Gypsy -95 171 91 4 603 22 56 0 0 chr3LHet 2471431 2471467 -84024 + AT_rich Low_complexity Low_complexity 1 36 0 4 603 1400 149 96 36 chr3LHet 2472251 2472607 -82884 + QUASIMODO_LTR LTR Gypsy 256 632 -26 4 603 34 55 0 0 chr3LHet 2473146 2473201 -82290 + AT_rich Low_complexity Low_complexity 1 55 0 4 603 1687 54 79 0 chr3LHet 2473536 2473776 -81715 - Gypsy10_LTR LTR Gypsy 0 364 106 4 603 273 158 140 0 chr3LHet 2474126 2474183 -81308 - DNAREP1_DM LINE Penelope -510 84 20 4 603 406 149 62 171 chr3LHet 2474344 2474490 -81001 + Gypsy3_LTR LTR Gypsy 1 130 -268 4 603 903 182 44 23 chr3LHet 2474491 2474720 -80771 + Gypsy3_I LTR Gypsy 4439 4699 -1478 4 603 1596 264 19 9 chr3LHet 2474763 2475225 -80266 + Gypsy3_I LTR Gypsy 5415 5881 -296 4 603 781 116 159 17 chr3LHet 2475252 2475428 -80063 - DNAREP1_DM LINE Penelope -232 362 162 4 603 3169 68 113 1 chr3LHet 2475433 2476122 -79369 - R1-2_DM LINE R1 -1524 1692 927 4 603 624 171 24 0 chr3LHet 2476179 2476302 -79189 - PROTOP_B DNA P -945 208 83 4 603 341 155 0 0 chr3LHet 2476329 2476387 -79104 - Invader3_LTR LTR Gypsy -147 151 94 4 603 2660 166 167 15 chr3LHet 2476443 2477160 -78331 - Invader3_I LTR Gypsy 0 4888 4063 4 603 3321 148 188 17 chr3LHet 2477176 2478182 -77309 - Invader3_I LTR Gypsy -893 3995 2819 4 603 22 35 0 0 chr3LHet 2478402 2478431 -77060 + AT_rich Low_complexity Low_complexity 1 29 0 4 603 302 184 26 13 chr3LHet 2478578 2478655 -76836 - Gypsy8_I LTR Gypsy -4268 79 2 4 603 300 193 91 68 chr3LHet 2478657 2478910 -76581 - Gypsy8_LTR LTR Gypsy -1 303 1 4 603 5911 102 49 53 chr3LHet 2479131 2480288 -75203 - PROTOP_B DNA P 0 1153 1 4 603 268 109 17 83 chr3LHet 2482069 2482129 -73362 + DNAREP1_DM LINE Penelope 492 547 -47 4 603 450 82 165 0 chr3LHet 2482195 2482280 -73211 + DNAREP1_DM LINE Penelope 496 594 0 4 603 250 30 0 29 chr3LHet 2482307 2482341 -73150 + DNAREP1_DM LINE Penelope 8 40 -554 4 603 503 288 9 26 chr3LHet 2482330 2482558 -72933 + TV1I LTR Gypsy 2873 3096 -2867 4 603 992 153 37 0 chr3LHet 2482559 2482748 -72743 - Invader3_I LTR Gypsy -2133 2755 2560 4 603 4428 48 150 36 chr3LHet 2482809 2483504 -71987 - G3_DM LINE Jockey -23 4582 3809 4 603 395 148 182 0 chr3LHet 2483497 2483585 -71906 - Invader3_I LTR Gypsy -2322 2566 2463 4 603 887 162 209 8 chr3LHet 2483583 2483832 -71659 - Invader3_I LTR Gypsy -3034 1854 1556 4 603 203 318 0 27 chr3LHet 2484265 2484375 -71116 + (CAA)n Simple_repeat Simple_repeat 3 109 0 4 603 424 282 59 75 chr3LHet 2485695 2486008 -69483 + G2_DM LINE Jockey 1792 2080 -1022 4 603 21 71 0 0 chr3LHet 2486732 2486774 -68717 + AT_rich Low_complexity Low_complexity 1 42 0 4 603 184 30 61 0 chr3LHet 2486774 2486807 -68684 + (TA)n Simple_repeat Simple_repeat 1 35 0 4 603 562 138 326 21 chr3LHet 2487201 2487385 -68106 + DNAREP1_DM LINE Penelope 188 427 -167 4 603 367 98 0 16 chr3LHet 2487386 2487448 -68043 + DNAREP1_DM LINE Penelope 534 594 0 4 603 25 51 0 0 chr3LHet 2487549 2487588 -67903 + AT_rich Low_complexity Low_complexity 1 39 0 4 603 884 186 51 21 chr3LHet 2489784 2490020 -65471 + DNAREP1_DM LINE Penelope 1 243 -351 4 603 311 68 0 0 chr3LHet 2490043 2490087 -65404 - PROTOP_B DNA P -1109 44 1 4 603 494 266 75 0 chr3LHet 2490186 2490359 -65132 - DIVER2_I LTR Pao -3306 841 656 4 604 23 0 0 0 chr3LHet 2492155 2492178 -63313 + AT_rich Low_complexity Low_complexity 1 23 0 4 604 260 240 40 0 chr3LHet 2492576 2492651 -62840 - Gypsy5_I LTR Gypsy -1234 5275 5198 4 604 52 17 0 0 chr3LHet 2492654 2492713 -62778 + AT_rich Low_complexity Low_complexity 1 59 0 4 604 782 288 60 42 chr3LHet 2492929 2493534 -61957 - ZAM_I LTR Gypsy -1922 5770 4979 4 604 3564 5 0 0 chr3LHet 2493541 2493948 -61543 - Gypsy6_LTR LTR Gypsy 0 407 1 4 604 37101 14 32 3 chr3LHet 2493950 2500000 -55491 - Gypsy6_I LTR Gypsy 0 7012 790 4 604 7204 1 1 0 chr3LHet 2500000 2500788 -54703 - Gypsy6_I LTR Gypsy -6223 789 1 4 604 3751 0 0 0 chr3LHet 2500788 2501195 -54296 - Gypsy6_LTR LTR Gypsy 0 407 1 4 604 311 313 20 24 chr3LHet 2501207 2501456 -54035 - ACCORD2_I LTR Gypsy -1373 5839 5592 4 604 2249 310 50 9 chr3LHet 2501611 2502734 -52757 - Gypsy5_I LTR Gypsy -3164 4326 2164 4 604 976 23 54 0 chr3LHet 2502788 2502917 -52574 + BS LINE Jockey 4990 5125 -1 4 604 293 184 13 13 chr3LHet 2503212 2503289 -52202 - ZAM_I LTR Gypsy -4740 2750 2674 4 604 227 261 56 22 chr3LHet 2503423 2503513 -51978 - ACCORD_I LTR Gypsy -4191 2097 2005 4 604 24 32 0 0 chr3LHet 2503895 2503926 -51565 + AT_rich Low_complexity Low_complexity 1 31 0 4 604 545 324 124 33 chr3LHet 2504358 2505209 -50282 - Gypsy_DS LTR Gypsy -611 6911 5984 4 604 225 226 0 19 chr3LHet 2505825 2505879 -49612 - ACCORD2_I LTR Gypsy -8 7204 7152 4 604 540 296 75 39 chr3LHet 2506656 2507011 -48480 - Gypsy5_I LTR Gypsy -1623 4886 4532 4 604 329 34 68 0 chr3LHet 2507011 2507070 -48421 + (TTA)n Simple_repeat Simple_repeat 3 65 0 4 604 540 296 75 39 chr3LHet 2507070 2507181 -48310 - Gypsy5_I LTR Gypsy -1978 4531 4404 4 604 2393 297 94 14 chr3LHet 2507427 2508704 -46787 - ZAM_I LTR Gypsy -2958 4532 3154 4 604 232 236 41 41 chr3LHet 2509090 2509187 -46304 - TIRANT_I LTR Gypsy -4758 2934 2838 4 604 12116 90 5 2 chr3LHet 2510317 2512048 -43443 - S_DM DNA Tc1 0 1736 1 4 604 8295 20 66 11 chr3LHet 2512259 2513306 -42185 + PROTOP_A DNA P 1 1105 0 4 604 180 0 0 0 chr3LHet 2513819 2513839 -41652 + (TATG)n Simple_repeat Simple_repeat 3 22 0 4 604 691 249 19 33 chr3LHet 2514481 2514693 -40798 - GTWIN_I LTR Gypsy -1491 4930 4722 4 604 3124 9 0 0 chr3LHet 2515448 2515794 -39697 - Invader4_LTR LTR Gypsy 0 346 1 4 604 17945 16 23 7 chr3LHet 2515794 2518112 -37379 - Invader4_I LTR Gypsy 0 2413 1 4 604 3124 9 0 0 chr3LHet 2518112 2518458 -37033 - Invader4_LTR LTR Gypsy 0 346 1 4 604 24 32 0 0 chr3LHet 2518474 2518505 -36986 + AT_rich Low_complexity Low_complexity 1 31 0 4 604 245 184 0 0 chr3LHet 2518524 2518573 -36918 - TIRANT_I LTR Gypsy -660 7032 6984 4 604 1725 59 8 0 chr3LHet 2518614 2518869 -36622 - S_DM DNA Tc1 0 1736 1480 4 604 515 336 53 21 chr3LHet 2519729 2520266 -35225 - ZAM_I LTR Gypsy -1844 5646 5341 4 604 454 296 12 36 chr3LHet 2520305 2520554 -34937 - ZAM_I LTR Gypsy -2288 4221 3979 4 604 932 302 75 2 chr3LHet 2521000 2521399 -34092 - TIRANT_I LTR Gypsy -3005 4687 4260 4 604 306 289 0 0 chr3LHet 2521416 2521499 -33992 + MICROPIA_I LTR Gypsy 2227 2309 -2167 4 604 233 288 0 0 chr3LHet 2521506 2521572 -33919 + Invader6_I LTR Gypsy 3163 3228 -871 4 604 2253 118 124 7 chr3LHet 2521688 2522108 -33383 + Invader1_I LTR Gypsy 2718 3186 0 4 604 2226 152 21 42 chr3LHet 2522108 2522540 -32951 + Invader1_LTR LTR Gypsy 1 423 0 4 604 1969 44 44 0 chr3LHet 2522540 2522785 -32706 - STALKER4_LTR LTR Gypsy -146 256 1 4 604 4131 102 44 8 chr3LHet 2522785 2523542 -31949 - STALKER4_I LTR Gypsy 0 6530 5722 4 604 37262 32 19 6 chr3LHet 2523538 2528337 -27154 - STALKER4_I LTR Gypsy -1330 5200 291 4 604 25 0 0 0 chr3LHet 2528361 2528386 -27105 + AT_rich Low_complexity Low_complexity 1 25 0 4 604 3193 58 1 14 chr3LHet 2528474 2528905 -26586 - STALKER4_LTR LTR Gypsy -3 399 9 4 604 5467 81 6 2 chr3LHet 2528915 2529722 -25769 - STALKER4_I LTR Gypsy 0 6530 5721 4 604 38099 36 22 11 chr3LHet 2529718 2534595 -20896 - STALKER4_I LTR Gypsy -1330 5200 268 4 604 180 0 0 0 chr3LHet 2534604 2534624 -20867 + (TTA)n Simple_repeat Simple_repeat 1 20 0 4 604 23 0 0 0 chr3LHet 2534633 2534656 -20835 + AT_rich Low_complexity Low_complexity 1 23 0 4 604 2784 55 33 0 chr3LHet 2534789 2535151 -20340 - STALKER4_LTR LTR Gypsy -28 374 1 4 604 21 0 0 0 chr3LHet 2536860 2536881 -18610 + AT_rich Low_complexity Low_complexity 1 21 0 4 604 255 190 37 65 chr3LHet 2537110 2537217 -18274 + T-rich Low_complexity Low_complexity 2 105 0 4 604 4141 42 76 2 chr3LHet 2538369 2538922 -16569 - IDEFIX_LTR LTR Gypsy 0 594 1 4 604 252 125 0 0 chr3LHet 2538890 2538930 -16561 + BARI1 DNA Tc1 3 42 -1708 4 604 375 307 0 32 chr3LHet 2539159 2539317 -16174 - GTWIN_I LTR Gypsy -1795 4712 4560 4 604 962 295 68 17 chr3LHet 2539324 2539799 -15692 - GTWIN_I LTR Gypsy -2070 4437 3942 4 604 335 274 43 2 chr3LHet 2539965 2540113 -15378 - Gypsy_DS LTR Gypsy -3429 4093 3972 4 604 345 316 12 6 chr3LHet 2540417 2540586 -14905 - Gypsy4_I LTR Gypsy -975 5313 5144 4 604 285 293 50 0 chr3LHet 2540628 2540727 -14764 - Gypsy4_I LTR Gypsy -1259 5029 4926 4 604 1281 129 124 4 chr3LHet 2540801 2541042 -14449 + DNAREP1_DM LINE Penelope 4 273 -321 4 604 365 339 6 12 chr3LHet 2541213 2541383 -14108 - Gypsy4_I LTR Gypsy -1797 4491 4323 4 604 282 188 62 0 chr3LHet 2541451 2541515 -13976 - Gypsy4_I LTR Gypsy -2704 3584 3517 4 604 262 253 89 0 chr3LHet 2541747 2541826 -13665 - Gypsy_I LTR Gypsy -5324 1183 1098 4 604 984 125 54 0 chr3LHet 2541849 2542017 -13474 + DMCR1A LINE CR1 4123 4299 -171 4 604 1436 130 121 16 chr3LHet 2542019 2542382 -13109 - DNAREP1_DM LINE Penelope -262 332 1 4 604 503 265 68 18 chr3LHet 2542379 2542597 -12894 - Gypsy_I LTR Gypsy -4497 2010 1797 4 604 270 290 12 0 chr3LHet 2542893 2542980 -12511 - Gypsy_I LTR Gypsy -6048 1474 1397 4 604 328 212 11 34 chr3LHet 2543057 2543145 -12346 - Gypsy6_LTR LTR Gypsy -168 239 154 4 604 25 0 0 0 chr3LHet 2543617 2543642 -11849 + AT_rich Low_complexity Low_complexity 1 25 0 4 604 1536 144 145 20 chr3LHet 2544022 2544489 -11002 - DNAREP1_DM LINE Penelope 0 594 117 4 604 330 167 0 0 chr3LHet 2544789 2544843 -10648 - DMCR1A LINE CR1 0 4470 4417 4 604 21 57 0 0 chr3LHet 2545605 2545640 -9851 + AT_rich Low_complexity Low_complexity 1 35 0 4 604 24 53 0 0 chr3LHet 2546390 2546428 -9063 + AT_rich Low_complexity Low_complexity 1 38 0 4 604 22 35 0 0 chr3LHet 2546816 2546845 -8646 + AT_rich Low_complexity Low_complexity 1 29 0 4 604 9393 77 40 13 chr3LHet 2547321 2548661 -6830 + BS LINE Jockey 9 1384 -3742 4 604 789 106 0 8 chr3LHet 2548657 2548781 -6710 + BS LINE Jockey 1844 1966 -3160 4 604 7737 67 118 0 chr3LHet 2548778 2550562 -4929 + BS LINE Jockey 3115 5108 -18 4 604 946 307 61 3 chr3LHet 2551301 2551628 -3863 - Gypsy3_I LTR Gypsy -458 5719 5374 4 604 722 156 92 18 chr3LHet 2551646 2551809 -3682 + DNAREP1_DM LINE Penelope 172 346 -248 4 604 819 188 78 17 chr3LHet 2551832 2552011 -3480 + DNAREP1_DM LINE Penelope 301 490 -104 4 604 2823 51 97 46 chr3LHet 2552012 2552482 -3009 - DM176_LTR LTR Gypsy -26 481 1 4 604 446 75 250 0 chr3LHet 2552483 2552563 -2928 + DNAREP1_DM LINE Penelope 495 594 0 4 604 25587 14 8 0 chr3LHet 2552576 2555491 0 - Gypsy4_I LTR Gypsy -1098 5190 2253 4