##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 20:43:21 PST 2014",Epoch=1389761001686,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/YPH499/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT YPH499 chrI 12529 . A G 251.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434;DP=70;Dels=0.00;FS=2.769;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=58.47;MQ0=0;MQRankSum=-0.748;QD=3.59;ReadPosRankSum=-1.210;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:54,16:70:99:281,0,1623 chrI 12594 . A T 174.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.977;DP=93;Dels=0.00;FS=14.747;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=52.67;MQ0=0;MQRankSum=-3.243;QD=1.87;ReadPosRankSum=-3.574;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,18:93:99:204,0,2074 chrI 12620 . T C 538.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812;DP=105;Dels=0.00;FS=2.852;HaplotypeScore=2.5939;MLEAC=1;MLEAF=0.500;MQ=51.47;MQ0=1;MQRankSum=1.201;QD=5.12;ReadPosRankSum=-2.246;SB=-1.840e+02 GT:AD:DP:GQ:PL 0/1:74,31:105:99:568,0,1928 chrI 12690 . A T 552.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DP=199;Dels=0.00;FS=10.172;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.51;MQ0=7;MQRankSum=-2.902;QD=2.77;ReadPosRankSum=-1.318;SB=-2.700e+02 GT:AD:DP:GQ:PL 0/1:145,54:199:99:582,0,3876 chrI 12716 . C T 302.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178;DP=194;Dels=0.00;FS=0.000;HaplotypeScore=23.9395;MLEAC=1;MLEAF=0.500;MQ=52.13;MQ0=7;MQRankSum=-2.160;QD=1.56;ReadPosRankSum=-2.167;SB=-1.400e+02 GT:AD:DP:GQ:PL 0/1:157,37:194:99:332,0,4103 chrI 12764 . T C 380.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522;DP=117;Dels=0.00;FS=7.456;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=53.45;MQ0=3;MQRankSum=0.875;QD=3.25;ReadPosRankSum=-3.110;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:90,27:117:99:410,0,2466 chrI 25340 . C A 840 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.31;MQ0=4;QD=25.45;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:873,75,0 chrI 25488 . G A 865 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.110;DP=42;Dels=0.00;FS=2.489;HaplotypeScore=13.8052;MLEAC=2;MLEAF=1.00;MQ=30.95;MQ0=0;MQRankSum=1.047;QD=20.60;ReadPosRankSum=1.290;SB=-6.200e+01 GT:AD:DP:GQ:PL 1/1:11,31:42:57:898,57,0 chrI 25497 . G A 789 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.464;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=10.7465;MLEAC=2;MLEAF=1.00;MQ=27.38;MQ0=0;MQRankSum=1.418;QD=21.32;ReadPosRankSum=-0.046;SB=-6.199e+01 GT:AD:DP:GQ:PL 1/1:6,31:37:51:822,51,0 chrI 25506 . C T 716 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.983;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=14.5331;MLEAC=2;MLEAF=1.00;MQ=26.77;MQ0=0;MQRankSum=-0.031;QD=23.87;ReadPosRankSum=0.946;SB=-6.200e+01 GT:AD:DP:GQ:PL 1/1:4,26:30:72:749,72,0 chrI 25509 . G A 617 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=8.8308;MLEAC=2;MLEAF=1.00;MQ=26.69;MQ0=0;MQRankSum=0.800;QD=18.70;ReadPosRankSum=-1.131;SB=-6.055e+01 GT:AD:DP:GQ:PL 1/1:4,29:33:33:650,33,0 chrI 25512 . T G 383 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.191;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=9.5648;MLEAC=2;MLEAF=1.00;MQ=25.90;MQ0=0;MQRankSum=-0.191;QD=15.32;ReadPosRankSum=1.339;SB=-6.200e+01 GT:AD:DP:GQ:PL 1/1:3,19:25:39:416,39,0 chrI 25515 . A G 350.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.175;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=8.6707;MLEAC=2;MLEAF=1.00;MQ=26.99;MQ0=0;MQRankSum=1.855;QD=15.26;ReadPosRankSum=2.205;SB=2.03 GT:AD:DP:GQ:PL 1/1:6,17:23:9:383,9,0 chrI 25536 . G A 478 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.011;DP=27;Dels=0.00;FS=13.802;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=27.02;MQ0=2;MQRankSum=1.589;QD=17.70;ReadPosRankSum=1.589;SB=-6.656e-03 GT:AD:DP:GQ:PL 1/1:2,24:27:48:511,48,0 chrI 25542 . A G 409.64 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.455;DP=35;Dels=0.00;FS=11.761;HaplotypeScore=2.1550;MLEAC=1;MLEAF=0.500;MQ=26.51;MQ0=2;MQRankSum=0.707;QD=11.70;ReadPosRankSum=1.538;SB=15.35 GT:AD:DP:GQ:PL 1/1:3,29:35:14:442,14,0 chrI 25546 . C T 10.42 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=3.1534;MLEAC=1;MLEAF=0.500;MQ=25.43;MQ0=4;MQRankSum=0.503;QD=0.26;ReadPosRankSum=-1.784;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,5:40:40:40,0,482 chrI 25560 . G A 586.54 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.398;DP=45;Dels=0.00;FS=17.160;HaplotypeScore=5.4875;MLEAC=2;MLEAF=1.00;MQ=25.26;MQ0=5;MQRankSum=1.534;QD=13.03;ReadPosRankSum=1.420;SB=-4.729e-01 GT:AD:DP:GQ:PL 1/1:9,36:45:2:616,2,0 chrI 25584 . A G 719 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.620;DP=55;Dels=0.00;FS=52.513;HaplotypeScore=5.1718;MLEAC=2;MLEAF=1.00;MQ=24.30;MQ0=8;MQRankSum=2.955;QD=13.07;ReadPosRankSum=0.515;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:10,45:55:69:752,69,0 chrI 25596 . G A 202.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.018;DP=57;Dels=0.00;FS=8.359;HaplotypeScore=13.6854;MLEAC=1;MLEAF=0.500;MQ=23.89;MQ0=9;MQRankSum=1.337;QD=3.54;ReadPosRankSum=-0.280;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,17:57:99:232,0,382 chrI 25599 . G A 202.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.061;DP=58;Dels=0.00;FS=8.359;HaplotypeScore=10.7122;MLEAC=1;MLEAF=0.500;MQ=23.69;MQ0=10;MQRankSum=0.776;QD=3.48;ReadPosRankSum=-0.108;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,17:58:99:232,0,385 chrI 25605 . C T 191.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.656;DP=56;Dels=0.00;FS=8.041;HaplotypeScore=11.7059;MLEAC=1;MLEAF=0.500;MQ=23.61;MQ0=10;MQRankSum=0.914;QD=3.41;ReadPosRankSum=0.914;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,15:56:99:221,0,364 chrI 25608 . A T 144.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182;DP=53;Dels=0.00;FS=5.216;HaplotypeScore=6.7481;MLEAC=1;MLEAF=0.500;MQ=23.47;MQ0=10;MQRankSum=1.653;QD=2.72;ReadPosRankSum=1.679;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,13:53:99:174,0,366 chrI 25611 . G A 333.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.360;DP=54;Dels=0.00;FS=23.516;HaplotypeScore=6.4159;MLEAC=1;MLEAF=0.500;MQ=22.93;MQ0=11;MQRankSum=2.262;QD=6.17;ReadPosRankSum=-1.211;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,26:54:99:363,0,174 chrI 25620 . G T 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713;DP=51;Dels=0.00;FS=8.105;HaplotypeScore=8.5708;MLEAC=1;MLEAF=0.500;MQ=20.70;MQ0=15;MQRankSum=1.289;QD=1.75;ReadPosRankSum=1.360;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,10:51:99:119,0,313 chrI 25623 . G A 217.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.157;DP=48;Dels=0.00;FS=20.946;HaplotypeScore=8.5708;MLEAC=1;MLEAF=0.500;MQ=20.03;MQ0=14;MQRankSum=1.018;QD=4.52;ReadPosRankSum=-0.638;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,17:48:99:247,0,123 chrI 25632 . A G 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DP=48;Dels=0.00;FS=11.155;HaplotypeScore=7.5724;MLEAC=1;MLEAF=0.500;MQ=18.68;MQ0=17;MQRankSum=1.763;QD=1.48;ReadPosRankSum=0.718;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,9:48:99:101,0,189 chrI 25644 . A G 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.543;DP=48;Dels=0.00;FS=13.365;HaplotypeScore=13.6761;MLEAC=1;MLEAF=0.500;MQ=14.73;MQ0=26;MQRankSum=3.502;QD=0.40;ReadPosRankSum=-0.111;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,6:48:49:49,0,110 chrI 25647 . G C 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.530;DP=51;Dels=0.00;FS=13.415;HaplotypeScore=20.5142;MLEAC=1;MLEAF=0.500;MQ=14.19;MQ0=30;MQRankSum=2.842;QD=0.37;ReadPosRankSum=-1.285;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,6:51:49:49,0,110 chrI 25650 . G A 28.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DP=45;Dels=0.00;FS=20.434;HaplotypeScore=9.5710;MLEAC=1;MLEAF=0.500;MQ=13.31;MQ0=28;MQRankSum=2.663;QD=0.62;ReadPosRankSum=-2.864;SB=-1.505e-02 GT:AD:DP:GQ:PL 0/1:39,6:45:24:58,0,24 chrI 25653 . G T 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;DP=45;Dels=0.00;FS=34.776;HaplotypeScore=11.4852;MLEAC=2;MLEAF=1.00;MQ=11.01;MQ0=31;MQRankSum=2.517;QD=0.79;ReadPosRankSum=-2.388;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:39,6:45:6:67,6,0 chrI 25654 . C A 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.180;DP=45;Dels=0.00;FS=26.946;HaplotypeScore=11.4852;MLEAC=2;MLEAF=1.00;MQ=11.01;MQ0=31;MQRankSum=2.637;QD=0.79;ReadPosRankSum=-2.637;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:39,4:45:6:67,6,0 chrI 26086 . C T 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.23;MQ0=17;QD=1.79;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:17,3:20:6:67,6,0 chrI 26090 . T C 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.23;MQ0=17;QD=1.79;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:17,3:20:6:67,6,0 chrI 26091 . G A 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.23;MQ0=17;QD=1.79;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:17,3:20:6:67,6,0 chrI 26106 . A G 122.26 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.29;MQ0=16;QD=5.56;SB=-1.373e-01 GT:AD:DP:GQ:PL 1/1:16,6:22:15:155,15,0 chrI 26115 . C T 144.13 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.42;MQ0=16;QD=6.27;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:16,7:23:18:177,18,0 chrI 26117 . A C 144.13 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.42;MQ0=16;QD=6.27;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:16,7:23:18:177,18,0 chrI 26127 . A G 144.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.74;MQ0=15;QD=6.55;SB=-7.359e-02 GT:AD:DP:GQ:PL 1/1:15,7:22:18:177,18,0 chrI 26130 . G A 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.78;MQ0=14;QD=4.08;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:14,5:19:12:110,12,0 chrI 26135 . C T 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.21;MQ0=14;QD=4.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,4:18:12:110,12,0 chrI 26136 . G A 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.21;MQ0=14;QD=4.31;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:14,4:18:12:110,12,0 chrI 26139 . G A 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.04;MQ0=14;QD=3.88;SB=-3.871e-01 GT:AD:DP:GQ:PL 1/1:14,6:20:12:110,12,0 chrI 26145 . T C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.40;MQ0=13;MQRankSum=0.000;QD=0.70;ReadPosRankSum=1.380;SB=-6.628e-03 GT:AD:DP:GQ:PL 0/1:17,2:19:43:43,0,43 chrI 26148 . A T 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=14.40;MQ0=13;MQRankSum=0.720;QD=0.70;ReadPosRankSum=-0.720;SB=-6.195e-03 GT:AD:DP:GQ:PL 0/1:15,4:19:43:43,0,43 chrI 26151 . G A 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.23;MQ0=11;MQRankSum=0.000;QD=0.78;ReadPosRankSum=0.720;SB=-6.628e-03 GT:AD:DP:GQ:PL 0/1:15,2:17:43:43,0,43 chrI 26154 . T C 13.22 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.23;MQ0=11;MQRankSum=0.720;QD=0.78;ReadPosRankSum=0.000;SB=-6.628e-03 GT:AD:DP:GQ:PL 0/1:15,2:17:43:43,0,43 chrI 26160 . G T 41.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;DP=16;Dels=0.00;FS=4.260;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=18.75;MQ0=8;MQRankSum=0.322;QD=2.56;ReadPosRankSum=0.322;SB=-5.655e-03 GT:AD:DP:GQ:PL 0/1:11,5:16:71:71,0,71 chrI 26163 . A G 144.13 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=21.65;MQ0=4;QD=12.01;SB=-3.307e+01 GT:AD:DP:GQ:PL 1/1:4,8:12:18:177,18,0 chrI 26169 . G A 68.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=3.9349;MLEAC=1;MLEAF=0.500;MQ=25.22;MQ0=1;MQRankSum=0.896;QD=5.67;ReadPosRankSum=1.246;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:5,7:12:57:98,0,57 chrI 26171 . T C 77.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;DP=11;Dels=0.00;FS=7.404;HaplotypeScore=3.9349;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=0;MQRankSum=0.791;QD=7.03;ReadPosRankSum=1.423;SB=-3.033e+01 GT:AD:DP:GQ:PL 0/1:1,10:11:8:107,0,8 chrI 26173 . T G 77.34 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.474;DP=11;Dels=0.00;FS=7.404;HaplotypeScore=3.9349;MLEAC=1;MLEAF=0.500;MQ=26.34;MQ0=0;MQRankSum=0.791;QD=7.03;ReadPosRankSum=1.423;SB=-3.033e+01 GT:AD:DP:GQ:PL 0/1:1,10:11:8:107,0,8 chrI 26181 . C T 68.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.919;DP=17;Dels=0.00;FS=10.212;HaplotypeScore=4.9332;MLEAC=1;MLEAF=0.500;MQ=24.71;MQ0=2;MQRankSum=0.919;QD=4.00;ReadPosRankSum=-0.184;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:7,10:17:87:98,0,87 chrI 26184 . A G 132.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243;DP=18;Dels=0.00;FS=3.468;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=24.97;MQ0=2;MQRankSum=-0.303;QD=7.33;ReadPosRankSum=0.303;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:6,12:18:51:162,0,51 chrI 26187 . T C 97.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.926;DP=21;Dels=0.00;FS=10.792;HaplotypeScore=2.9755;MLEAC=1;MLEAF=0.500;MQ=23.11;MQ0=5;MQRankSum=0.680;QD=4.62;ReadPosRankSum=0.340;SB=-6.485e-03 GT:AD:DP:GQ:PL 0/1:10,11:21:84:127,0,84 chrI 26221 . C T 58.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.826;DP=32;Dels=0.00;FS=18.195;HaplotypeScore=1.9577;MLEAC=1;MLEAF=0.500;MQ=16.73;MQ0=20;MQRankSum=0.752;QD=1.82;ReadPosRankSum=-0.107;SB=-3.169e+00 GT:AD:DP:GQ:PL 0/1:22,10:32:11:88,0,11 chrI 26225 . T C 58.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159;DP=37;Dels=0.00;FS=7.782;HaplotypeScore=1.9577;MLEAC=1;MLEAF=0.500;MQ=15.56;MQ0=25;MQRankSum=1.159;QD=1.57;ReadPosRankSum=-0.579;SB=-3.017e+01 GT:AD:DP:GQ:PL 0/1:26,11:37:11:88,0,11 chrI 26226 . G A 58.18 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.869;DP=37;Dels=0.00;FS=7.782;HaplotypeScore=1.9577;MLEAC=1;MLEAF=0.500;MQ=15.56;MQ0=25;MQRankSum=1.159;QD=1.57;ReadPosRankSum=-0.579;SB=-3.017e+01 GT:AD:DP:GQ:PL 0/1:26,11:37:11:88,0,11 chrI 26331 . G A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451;DP=107;Dels=0.00;FS=3.998;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=11.96;MQ0=66;MQRankSum=0.411;QD=0.29;ReadPosRankSum=-2.188;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:89,18:107:61:61,0,515 chrI 26412 . G C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.55;MQ0=16;QD=1.18;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:6:56,6,0 chrI 26778 . C T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.754;DP=43;Dels=0.00;FS=15.441;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=9.70;MQ0=36;MQRankSum=1.754;QD=2.00;ReadPosRankSum=-0.550;SB=-2.508e+00 GT:AD:DP:GQ:PL 0/1:38,5:43:25:116,0,25 chrI 26793 . A G 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DP=48;Dels=0.00;FS=15.441;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=9.29;MQ0=40;MQRankSum=2.017;QD=1.79;ReadPosRankSum=0.000;SB=-2.508e+00 GT:AD:DP:GQ:PL 0/1:44,4:48:25:116,0,25 chrI 26835 . G A 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DP=53;Dels=0.00;FS=21.004;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.14;MQ0=44;MQRankSum=2.219;QD=1.47;ReadPosRankSum=-0.361;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:49,4:53:44:108,0,44 chrI 26838 . A G 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DP=53;Dels=0.00;FS=21.004;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.14;MQ0=44;MQRankSum=2.219;QD=1.47;ReadPosRankSum=-0.876;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:49,4:53:44:108,0,44 chrI 26839 . A G 78.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219;DP=54;Dels=0.00;FS=21.004;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.06;MQ0=45;MQRankSum=2.219;QD=1.44;ReadPosRankSum=-0.876;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:50,4:54:44:108,0,44 chrI 26923 . C G 35.77 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.96;MQ0=12;QD=2.55;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:12,2:14:6:67,6,0 chrI 26931 . A G 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.881;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=19.45;MQ0=11;MQRankSum=-0.729;QD=2.45;ReadPosRankSum=2.219;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,4:20:79:79,0,113 chrI 26934 . G A 49.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=18.98;MQ0=12;MQRankSum=-1.001;QD=2.33;ReadPosRankSum=-1.203;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,3:21:79:79,0,113 chrI 26937 . G A 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=20.01;MQ0=11;MQRankSum=0.000;QD=5.24;ReadPosRankSum=-2.383;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:15,6:21:76:140,0,76 chrI 26940 . A G 110.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=19.63;MQ0=13;MQRankSum=0.387;QD=4.58;ReadPosRankSum=-1.532;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,6:24:99:140,0,107 chrI 26949 . G A 71.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.041;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=21.23;MQ0=13;MQRankSum=-1.286;QD=2.54;ReadPosRankSum=2.266;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,5:28:99:101,0,201 chrI 26954 . A T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.021;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.9933;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=14;MQRankSum=-1.776;QD=1.38;ReadPosRankSum=2.266;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,5:29:70:70,0,204 chrI 26958 . G T 40.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=3.9933;MLEAC=1;MLEAF=0.500;MQ=20.86;MQ0=14;MQRankSum=-0.354;QD=1.38;ReadPosRankSum=1.909;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,4:29:70:70,0,204 chrI 26961 . A G 34.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=4.9916;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=13;MQRankSum=0.053;QD=1.13;ReadPosRankSum=0.896;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,5:30:64:64,0,265 chrI 26964 . A T 37.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.9810;MLEAC=1;MLEAF=0.500;MQ=21.83;MQ0=13;MQRankSum=0.453;QD=1.23;ReadPosRankSum=1.246;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,5:30:67:67,0,234 chrI 26970 . G A,T 252.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.369;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.7234;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.35;MQ0=13;MQRankSum=-1.187;QD=7.88;ReadPosRankSum=-0.091;SB=-6.529e-03 GT:AD:DP:GQ:PL 1/2:14,11,7:32:87:312,87,94,197,0,215 chrI 26973 . A G 378 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.7183;MLEAC=2;MLEAF=1.00;MQ=22.70;MQ0=12;QD=12.19;SB=-7.595e-03 GT:AD:DP:GQ:PL 1/1:12,19:31:39:411,39,0 chrI 26974 . A G 176.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.7183;MLEAC=1;MLEAF=0.500;MQ=22.70;MQ0=12;MQRankSum=0.124;QD=5.68;ReadPosRankSum=0.289;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,11:31:99:206,0,126 chrI 26979 . G A 66.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.037;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=3.7200;MLEAC=1;MLEAF=0.500;MQ=22.43;MQ0=13;MQRankSum=0.858;QD=1.94;ReadPosRankSum=-0.709;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,7:34:96:96,0,231 chrI 26981 . T C 101.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=2.7217;MLEAC=2;MLEAF=1.00;MQ=22.43;MQ0=13;QD=2.99;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:13,21:34:12:134,12,0 chrI 26983 . T G 101.51 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.7323;MLEAC=2;MLEAF=1.00;MQ=22.43;MQ0=13;QD=2.99;SB=-5.226e-01 GT:AD:DP:GQ:PL 1/1:13,21:34:12:134,12,0 chrI 26991 . C T 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=24.28;MQ0=11;MQRankSum=0.599;QD=1.51;ReadPosRankSum=-1.079;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,10:39:89:89,0,323 chrI 26994 . A G 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.298;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=24.84;MQ0=10;MQRankSum=0.770;QD=1.40;ReadPosRankSum=-0.594;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,10:40:86:86,0,342 chrI 26997 . T C 138.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.9940;MLEAC=1;MLEAF=0.500;MQ=24.15;MQ0=14;MQRankSum=0.276;QD=2.76;ReadPosRankSum=-1.087;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,14:50:99:168,0,424 chrI 27027 . A T 922 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=15;QD=15.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:15,44:59:87:955,87,0 chrI 27031 . C T 618.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.998;DP=62;Dels=0.00;FS=5.441;HaplotypeScore=1.7333;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=20;MQRankSum=2.575;QD=9.97;ReadPosRankSum=2.213;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,30:62:99:648,0,131 chrI 27035 . T C 791 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.535;DP=55;Dels=0.00;FS=15.441;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=20;MQRankSum=1.634;QD=14.38;ReadPosRankSum=1.634;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:21,34:55:75:824,75,0 chrI 27036 . G A 788 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.337;DP=55;Dels=0.00;FS=15.441;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=22.40;MQ0=20;MQRankSum=1.634;QD=14.33;ReadPosRankSum=1.535;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:21,34:55:75:821,75,0 chrI 27044 . C T 790 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=23.16;MQ0=17;QD=14.91;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:17,35:53:75:823,75,0 chrI 27060 . A T 800 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=17;QD=14.55;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:17,33:55:75:833,75,0 chrI 27063 . G A 754.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.736;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=23.40;MQ0=17;MQRankSum=2.640;QD=13.71;ReadPosRankSum=0.785;SB=-1.122e+00 GT:AD:DP:GQ:PL 1/1:21,34:55:1:783,1,0 chrI 27072 . A G 784.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.118;DP=55;Dels=0.00;FS=9.777;HaplotypeScore=3.4667;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=17;MQRankSum=1.546;QD=14.26;ReadPosRankSum=-0.214;SB=-3.508e+00 GT:AD:DP:GQ:PL 1/1:21,34:55:2:814,2,0 chrI 27075 . G A 785.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.416;DP=54;Dels=0.00;FS=9.661;HaplotypeScore=2.6000;MLEAC=2;MLEAF=1.00;MQ=23.50;MQ0=17;MQRankSum=0.660;QD=14.55;ReadPosRankSum=0.024;SB=-2.496e+00 GT:AD:DP:GQ:PL 1/1:21,33:54:4:816,4,0 chrI 27080 . C T 784.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.737;DP=50;Dels=0.00;FS=9.294;HaplotypeScore=21.1666;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=16;MQRankSum=1.684;QD=15.69;ReadPosRankSum=0.989;SB=-2.911e+00 GT:AD:DP:GQ:PL 1/1:20,30:50:2:814,2,0 chrI 27081 . G A 870 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.174;DP=50;Dels=0.00;FS=14.914;HaplotypeScore=21.1666;MLEAC=2;MLEAF=1.00;MQ=23.37;MQ0=16;MQRankSum=1.621;QD=17.40;ReadPosRankSum=-1.733;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:17,30:50:81:903,81,0 chrI 27084 . G A 784.54 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.837;DP=52;Dels=0.00;FS=9.542;HaplotypeScore=19.1948;MLEAC=2;MLEAF=1.00;MQ=23.61;MQ0=16;MQRankSum=1.686;QD=15.09;ReadPosRankSum=0.881;SB=-3.381e+00 GT:AD:DP:GQ:PL 1/1:20,32:52:2:814,2,0 chrI 27090 . T C 488.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.073;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=14.3039;MLEAC=1;MLEAF=0.500;MQ=23.72;MQ0=16;MQRankSum=0.571;QD=8.87;ReadPosRankSum=1.537;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:30,25:55:99:518,0,308 chrI 27093 . A T 126.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.385;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=6.5933;MLEAC=1;MLEAF=0.500;MQ=23.49;MQ0=15;MQRankSum=0.980;QD=2.52;ReadPosRankSum=-0.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,7:50:99:156,0,534 chrI 27096 . A G 100.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.375;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=5.5950;MLEAC=1;MLEAF=0.500;MQ=22.95;MQ0=15;MQRankSum=0.025;QD=2.17;ReadPosRankSum=-0.525;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:40,6:46:99:130,0,476 chrI 27099 . T C 382.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.729;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=2.6000;MLEAC=1;MLEAF=0.500;MQ=23.87;MQ0=12;MQRankSum=0.274;QD=8.68;ReadPosRankSum=0.684;SB=-1.420e+02 GT:AD:DP:GQ:PL 0/1:19,25:44:99:412,0,128 chrI 27105 . A G,T 554.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.325;DP=45;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=24.38;MQ0=11;MQRankSum=1.631;QD=12.31;ReadPosRankSum=-0.510;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/2:12,29,4:45:69:614,120,69,494,0,482 chrI 27126 . T C 689 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.310;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.57;MQ0=9;MQRankSum=0.705;QD=14.98;ReadPosRankSum=1.511;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:11,35:46:39:722,39,0 chrI 27129 . C G 719 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.11;MQ0=3;QD=18.44;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:1,36:39:69:752,69,0 chrI 141030 . T A 1171 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.59;MQ0=6;QD=27.23;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1204,108,0 chrI 141135 . A T 1107 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.45;MQ0=3;QD=30.75;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1140,96,0 chrI 163774 . C G 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.026;DP=4;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.69;MQ0=0;MQRankSum=1.026;QD=8.94;ReadPosRankSum=1.026;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:2,2:4:6:67,6,0 chrI 188708 . A G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.275;DP=30;Dels=0.00;FS=14.374;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.43;MQ0=0;MQRankSum=-1.739;QD=0.67;ReadPosRankSum=2.288;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,4:30:50:50,0,759 chrI 188824 . A G 58.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.070;DP=94;Dels=0.01;FS=45.061;HaplotypeScore=7.7889;MLEAC=1;MLEAF=0.500;MQ=48.48;MQ0=1;MQRankSum=-2.214;QD=0.62;ReadPosRankSum=-1.276;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,12:93:88:88,0,2270 chrI 188881 . G C 947.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DP=123;Dels=0.00;FS=5.182;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=48.89;MQ0=7;MQRankSum=-6.866;QD=7.70;ReadPosRankSum=2.110;SB=-2.540e+02 GT:AD:DP:GQ:PL 0/1:80,43:123:99:977,0,2372 chrI 188939 . A G 645.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;DP=113;Dels=0.00;FS=1.733;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.53;MQ0=6;MQRankSum=-4.412;QD=5.71;ReadPosRankSum=0.532;SB=-3.690e+02 GT:AD:DP:GQ:PL 0/1:76,37:113:99:675,0,2318 chrI 189245 . A G 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.102;DP=57;Dels=0.00;FS=16.860;HaplotypeScore=2.7772;MLEAC=1;MLEAF=0.500;MQ=50.03;MQ0=0;MQRankSum=-3.650;QD=2.93;ReadPosRankSum=-0.536;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,11:57:99:197,0,1446 chrI 199811 . T G 2662 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=33.70;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2695,217,0 chrI 205145 . C T 55.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.829;DP=43;Dels=0.00;FS=47.345;HaplotypeScore=12.6451;MLEAC=1;MLEAF=0.500;MQ=13.51;MQ0=22;MQRankSum=2.997;QD=1.28;ReadPosRankSum=0.584;SB=-3.211e+00 GT:AD:DP:GQ:PL 0/1:28,15:43:10:85,0,10 chrI 205146 . A G 55.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.452;DP=43;Dels=0.00;FS=47.345;HaplotypeScore=12.6451;MLEAC=1;MLEAF=0.500;MQ=13.51;MQ0=22;MQRankSum=2.919;QD=1.28;ReadPosRankSum=0.584;SB=-3.211e+00 GT:AD:DP:GQ:PL 0/1:28,15:43:10:85,0,10 chrI 205150 . G A 58.22 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=43;Dels=0.00;FS=47.345;HaplotypeScore=12.6451;MLEAC=1;MLEAF=0.500;MQ=13.51;MQ0=22;MQRankSum=2.764;QD=1.35;ReadPosRankSum=1.207;SB=-3.211e+00 GT:AD:DP:GQ:PL 0/1:28,15:43:10:88,0,10 chrI 205163 . A T 26.77 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.778;DP=26;Dels=0.00;FS=25.611;HaplotypeScore=6.3094;MLEAC=2;MLEAF=1.00;MQ=14.87;MQ0=12;MQRankSum=2.491;QD=1.03;ReadPosRankSum=1.090;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:15,11:26:6:58,6,0 chrI 205208 . T C 67.97 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.90;MQ0=2;QD=5.23;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:2,11:13:9:100,9,0 chrI 205217 . A G 64.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=3;MQRankSum=1.203;QD=5.41;ReadPosRankSum=-0.248;SB=2.10 GT:AD:DP:GQ:PL 1/1:6,6:12:9:97,9,0 chrI 205220 . C T 67.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.20;MQ0=3;MQRankSum=1.067;QD=6.18;ReadPosRankSum=-1.067;SB=2.10 GT:AD:DP:GQ:PL 1/1:5,6:11:9:100,9,0 chrI 205226 . A G 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=4.6905;MLEAC=2;MLEAF=1.00;MQ=18.87;MQ0=4;MQRankSum=0.684;QD=2.98;ReadPosRankSum=0.322;SB=1.27 GT:AD:DP:GQ:PL 1/1:7,5:12:6:67,6,0 chrI 205232 . C T 32.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.747;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=5.6237;MLEAC=2;MLEAF=1.00;MQ=17.47;MQ0=6;MQRankSum=0.747;QD=2.34;ReadPosRankSum=0.747;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:7,7:14:6:64,6,0 chrI 205700 . T C 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=1;MLEAF=0.500;MQ=21.93;MQ0=27;MQRankSum=1.665;QD=0.77;ReadPosRankSum=0.581;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,8:52:70:70,0,516 chrI 205811 . C T 335.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.646;DP=113;Dels=0.00;FS=64.887;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.66;MQ0=29;MQRankSum=-3.829;QD=2.96;ReadPosRankSum=-0.470;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:79,34:113:99:365,0,1464 chrI 205829 . T C 411.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.121;DP=112;Dels=0.00;FS=43.277;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=30.37;MQ0=26;MQRankSum=-5.302;QD=3.67;ReadPosRankSum=1.607;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:75,37:112:99:441,0,1496 chrI 205835 . C T 409.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.904;DP=110;Dels=0.00;FS=42.248;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=31.00;MQ0=24;MQRankSum=-5.115;QD=3.72;ReadPosRankSum=2.762;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:74,36:110:99:439,0,1478 chrI 205886 . T C 340.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011;DP=96;Dels=0.00;FS=21.302;HaplotypeScore=6.8901;MLEAC=1;MLEAF=0.500;MQ=42.63;MQ0=2;MQRankSum=-5.409;QD=3.54;ReadPosRankSum=-1.504;SB=-5.601e+01 GT:AD:DP:GQ:PL 0/1:73,23:96:99:370,0,2190 chrI 205913 . T C 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.399;DP=82;Dels=0.00;FS=1.229;HaplotypeScore=5.8803;MLEAC=1;MLEAF=0.500;MQ=47.06;MQ0=0;MQRankSum=-1.496;QD=0.76;ReadPosRankSum=1.275;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,11:82:92:92,0,2095 chrI 206126 . T C 681 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.13;MQ0=0;QD=27.24;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:66:714,66,0 chrI 206129 . A C 619 SnpCluster AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.42;MQ0=0;QD=28.14;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:60:652,60,0 chrI 206132 . G T 534 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.36;MQ0=0;QD=29.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:51:567,51,0 chrI 206144 . C T 581 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.13;MQ0=1;QD=21.52;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:57:614,57,0 chrI 206375 . C T 130.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.448;DP=90;Dels=0.00;FS=9.871;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.66;MQ0=4;MQRankSum=-3.016;QD=1.44;ReadPosRankSum=-0.990;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,19:90:99:160,0,1888 chrI 206462 . T C 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.048;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=10;MQRankSum=1.071;QD=0.65;ReadPosRankSum=-2.803;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:78,17:95:92:92,0,2124 chrI 210818 . A T 1371 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.766;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.50;MQ0=10;MQRankSum=0.927;QD=25.87;ReadPosRankSum=0.363;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:93:1404,93,0 chrI 211019 . T C 1315 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.05;MQ0=0;QD=30.58;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1348,120,0 chrII 796 . T C 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;DP=47;Dels=0.00;FS=13.278;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=14.12;MQ0=20;MQRankSum=1.217;QD=1.02;ReadPosRankSum=0.406;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,5:47:78:78,0,240 chrII 1254 . T C 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.211;DP=54;Dels=0.00;FS=11.392;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=21.14;MQ0=21;MQRankSum=-0.960;QD=3.13;ReadPosRankSum=0.607;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:44,10:54:99:199,0,519 chrII 2335 . C A 59.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.505;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.53;MQ0=31;MQRankSum=-1.295;QD=1.09;ReadPosRankSum=-0.245;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,6:54:89:89,0,297 chrII 2354 . A G 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=16.76;MQ0=40;MQRankSum=0.724;QD=0.85;ReadPosRankSum=0.724;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,4:62:83:83,0,373 chrII 2514 . C T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.003;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.56;MQ0=49;MQRankSum=0.118;QD=0.17;ReadPosRankSum=-1.296;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,2:60:40:40,0,176 chrII 6440 . G C 826 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.36;MQ0=3;QD=25.03;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:859,78,0 chrII 7510 . G A 432 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=2;QD=21.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:465,45,0 chrII 7511 . G A 432 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.97;MQ0=2;QD=21.60;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:45:465,45,0 chrII 15101 . T G 1642 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=7.068;HaplotypeScore=1.9827;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;MQRankSum=-1.609;QD=29.32;ReadPosRankSum=1.361;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1675,150,0 chrII 15510 . G T 1457 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.11;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1490,129,0 chrII 15518 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.50;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1545,138,0 chrII 16380 . C T 1353 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.79;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1386,120,0 chrII 16392 . A G 1401 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.81;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1434,123,0 chrII 19056 . T G 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.788;DP=53;Dels=0.00;FS=44.139;HaplotypeScore=10.7897;MLEAC=1;MLEAF=0.500;MQ=58.32;MQ0=0;MQRankSum=-0.086;QD=1.70;ReadPosRankSum=-1.385;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,22:53:99:120,0,744 chrII 30012 . C T 675 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.47;MQ0=0;QD=12.05;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:78:708,78,0 chrII 30050 . A G 506 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.34;MQ0=5;QD=8.43;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:3,57:60:60:539,60,0 chrII 30210 . T C 232.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.45;MQ0=3;QD=16.57;SB=-6.697e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:24:265,24,0 chrII 30723 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.358;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.57;MQ0=24;MQRankSum=1.231;QD=0.82;ReadPosRankSum=-1.231;SB=-2.076e+01 GT:AD:DP:GQ:PL 1/1:27,2:29:6:55,6,0 chrII 30754 . G A 89.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.262;DP=36;Dels=0.00;FS=2.632;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.54;MQ0=25;MQRankSum=2.262;QD=2.49;ReadPosRankSum=0.566;SB=-2.155e+01 GT:AD:DP:GQ:PL 1/1:26,10:36:12:122,12,0 chrII 30848 . C G 292 filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.84;MQ0=9;QD=10.43;SB=-8.699e+01 GT:AD:DP:GQ:PL 1/1:7,21:28:39:325,39,0 chrII 32599 . C G 100.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155;DP=49;Dels=0.00;FS=8.422;HaplotypeScore=1.5226;MLEAC=1;MLEAF=0.500;MQ=17.47;MQ0=26;MQRankSum=1.085;QD=2.04;ReadPosRankSum=-1.855;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,8:49:99:130,0,274 chrII 32690 . C A 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.325;DP=55;Dels=0.00;FS=2.525;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.61;MQ0=22;MQRankSum=-0.110;QD=2.35;ReadPosRankSum=-1.255;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,11:55:99:159,0,509 chrII 33880 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299;DP=50;Dels=0.00;FS=4.993;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.47;MQ0=0;MQRankSum=1.776;QD=0.26;ReadPosRankSum=-0.672;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,6:50:43:43,0,959 chrII 35485 . C T 101.51 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.61;MQ0=11;QD=4.83;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,21:21:12:134,12,0 chrII 59755 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=31.51;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1451,129,0 chrII 137659 . T A 50.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.462;DP=47;Dels=0.02;FS=122.430;HaplotypeScore=11.4620;MLEAC=1;MLEAF=0.500;MQ=53.81;MQ0=0;MQRankSum=-0.637;QD=1.06;ReadPosRankSum=-1.639;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:17,29:46:80:80,0,515 chrII 159797 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.56;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1408,126,0 chrII 159857 . C G 1478 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.98;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1511,135,0 chrII 159891 . A C 1406 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.29;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1439,126,0 chrII 159926 . C A 1187 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=31.24;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1220,108,0 chrII 160143 . T G 1681 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=30.02;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1714,150,0 chrII 160403 . G T 2049 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=30.58;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2082,183,0 chrII 160810 . T G 2088 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=29.41;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2121,192,0 chrII 161065 . G A 1868 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.62;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1901,168,0 chrII 165877 . T C 936 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=30.19;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:87:969,87,0 chrII 166019 . T C 1647 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=48.4605;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=29.95;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1680,153,0 chrII 166311 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=31.04;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1461,129,0 chrII 166396 . A T 1466 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=32.58;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1499,129,0 chrII 166460 . C T 1265 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=30.85;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1298,114,0 chrII 166550 . G A 1786 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=57.65;MQ0=0;QD=31.89;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1819,159,0 chrII 166572 . C T 1673 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=30.98;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1706,150,0 chrII 166607 . T C 1410 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.84;MQ0=0;QD=28.20;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1443,132,0 chrII 166703 . G A 1076 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.62;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:96:1109,96,0 chrII 167174 . A G 1934 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=33.34;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1967,174,0 chrII 167373 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=30.83;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:1,74:75:99:2345,208,0 chrII 167426 . G A 1912 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=33.54;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1945,168,0 chrII 167527 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=32.38;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2008,178,0 chrII 167650 . C T 1270 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=29.53;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1303,114,0 chrII 167794 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=31.23;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1688,153,0 chrII 167821 . A T 1852 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9874;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=26.84;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1885,165,0 chrII 167924 . A T 2040 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;QD=29.57;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2073,181,0 chrII 167998 . G A 209.01 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=6.1265;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;QD=5.36;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:27:242,27,0 chrII 168065 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=28.50;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:90:1002,90,0 chrII 168150 . C G 1923 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=29.14;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1956,174,0 chrII 168194 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=31.01;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2142,190,0 chrII 168448 . T C 1179 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=24.56;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1212,108,0 chrII 168467 . T G 1161 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=32.25;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1194,105,0 chrII 168653 . G A 2344 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.11;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2377,208,0 chrII 168711 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=32.04;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1763,156,0 chrII 168731 . A G 1929 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.11;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1962,174,0 chrII 168747 . A G 1691 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.16;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1724,150,0 chrII 168775 . A T 1564 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.00;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1597,138,0 chrII 168802 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.54;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1530,135,0 chrII 168980 . C T 1511 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=31.48;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1544,135,0 chrII 169483 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=31.52;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1483,132,0 chrII 169496 . G C 1732 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=30.39;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1765,159,0 chrII 169566 . G T 1715 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=31.76;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1748,153,0 chrII 169589 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=29.53;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1746,153,0 chrII 169601 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=29.21;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1698,147,0 chrII 169621 . C T 1546 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=28.63;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1579,135,0 chrII 169820 . G T 2011 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=30.47;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2044,178,0 chrII 169875 . T C 1934 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.00;MQ0=0;QD=27.63;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1967,180,0 chrII 169947 . C A 802 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=17.06;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:75:835,75,0 chrII 170086 . A G 1426 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.663;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.9759;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;MQRankSum=-0.624;QD=28.52;ReadPosRankSum=-1.317;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1459,107,0 chrII 170167 . C G 1014 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=27.41;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:1047,96,0 chrII 170206 . G T 1212 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=28.86;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1245,120,0 chrII 170207 . C T 1212 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=28.86;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1245,120,0 chrII 170208 . C T 1214 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=28.90;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1247,120,0 chrII 170320 . A C 1756 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=53.40;MQ0=0;QD=29.76;SB=-9.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1789,162,0 chrII 170442 . T C 1431 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.9976;MLEAC=2;MLEAF=1.00;MQ=54.28;MQ0=0;QD=29.20;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1464,132,0 chrII 170790 . T C 1635 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.9874;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=30.85;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1668,153,0 chrII 171183 . G T 2536 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=31.70;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2569,223,0 chrII 171433 . A G 799 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.59;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:832,75,0 chrII 171570 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=29.22;SB=-2.050e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1640,141,0 chrII 171612 . G C 1889 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=29.98;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1922,171,0 chrII 172028 . G C 1208 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.81;MQ0=0;QD=28.09;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1241,111,0 chrII 172038 . T A 1423 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=30.93;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1456,126,0 chrII 172113 . T C 1362 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=28.37;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1395,123,0 chrII 172223 . A G 1171 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=54.40;MQ0=0;QD=31.65;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1204,108,0 chrII 172245 . C T 778 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.13;MQ0=0;QD=16.91;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:811,102,0 chrII 172262 . A G 1173 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.38;MQ0=0;QD=24.44;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1206,108,0 chrII 172302 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=35.57;MQ0=0;QD=21.50;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1151,105,0 chrII 172307 . T C 1034 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=32.65;MQ0=0;QD=21.10;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:96:1067,96,0 chrII 172338 . T G 1089 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.31;MQ0=0;QD=22.69;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1122,102,0 chrII 172488 . A G 1985 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=31.51;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2018,178,0 chrII 172681 . G A 1092 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=32.12;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1125,99,0 chrII 177622 . G A 2353 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2386,211,0 chrII 177793 . G A 2295 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=32.32;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2328,205,0 chrII 178351 . C T 1527 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=31.81;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1560,138,0 chrII 179248 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.73;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1579,144,0 chrII 179257 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.37;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1915,168,0 chrII 179290 . C G 1345 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=29.24;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1378,129,0 chrII 179410 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=31.40;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1980,174,0 chrII 179872 . T C 2142 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=4.5973;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=29.34;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,72:73:99:2175,196,0 chrII 180070 . T G 1288 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.67;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1321,117,0 chrII 180255 . G T 3328.01 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.40;SB=-1.709e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3328,289,0 chrII 180379 . A G 1237 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=26.32;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1270,114,0 chrII 180607 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=31.62;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1930,171,0 chrII 181033 . T C 887 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=13.44;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:920,119,0 chrII 181034 . G T 917 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=14.33;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:950,122,0 chrII 181279 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=29.84;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1525,129,0 chrII 181425 . A C 1759 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.32;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1792,159,0 chrII 181635 . C T 1371 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=31.16;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1404,123,0 chrII 181647 . T C 1158 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=28.95;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1191,108,0 chrII 182128 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.32;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,61:62:99:1851,168,0 chrII 182137 . G T 1983 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.98;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2016,178,0 chrII 182323 . C G 2132 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=29.61;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2165,196,0 chrII 182436 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=26.98;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1544,144,0 chrII 182892 . G A 1523 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.7007;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=27.69;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,53:55:99:1556,141,0 chrII 182901 . C T 1803 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.1091;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=29.08;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1836,165,0 chrII 183084 . A C 2423 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.88;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2456,220,0 chrII 183198 . T C 2083 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=31.09;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2116,193,0 chrII 183456 . A G 1701 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.44;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1734,159,0 chrII 183459 . C T 1549 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1582,141,0 chrII 183810 . C T 2101 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=31.83;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2134,190,0 chrII 183889 . C T 2220 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.8295;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=32.65;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2253,196,0 chrII 184236 . G C 2420 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=32.70;SB=-1.153e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2453,220,0 chrII 184249 . T C 2641 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=31.44;SB=-1.376e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2674,241,0 chrII 184343 . T C 2188 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.44;MQ0=0;QD=29.57;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2221,199,0 chrII 184388 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.17;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1404,123,0 chrII 184606 . C A 2402 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=29.29;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,81:82:99:2435,214,0 chrII 184799 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=28.37;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1792,162,0 chrII 184932 . A C 1789 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=31.39;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1822,159,0 chrII 184941 . T A 1824 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.42;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1857,162,0 chrII 185376 . G A 1900 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=30.65;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1933,171,0 chrII 185442 . C G 2433 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.33;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2466,217,0 chrII 185478 . C G 2453 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.45;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2486,220,0 chrII 185492 . C T 2666 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.91;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2699,235,0 chrII 185526 . A G 1819 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=32.48;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1852,162,0 chrII 185579 . A G 1303 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=30.30;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1336,117,0 chrII 185762 . T C 1863 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=30.54;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1896,174,0 chrII 185891 . T A 1381 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=31.39;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1414,123,0 chrII 185922 . A G 1655 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=28.05;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1688,153,0 chrII 185954 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=29.67;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1754,159,0 chrII 185979 . T A 1599 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=30.17;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1632,141,0 chrII 186008 . T G 1507 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=28.43;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1540,138,0 chrII 186049 . T A 1542 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=32.12;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1575,138,0 chrII 186067 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=29.67;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1754,156,0 chrII 186185 . G A 2023 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=30.65;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:2056,180,0 chrII 186210 . G C 2297 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.47;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2330,211,0 chrII 186253 . A G 1638 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.74;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1671,150,0 chrII 186366 . A G 2168 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=30.97;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2201,193,0 chrII 186379 . T C 2089 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=29.84;SB=-3.080e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:2122,190,0 chrII 186397 . T C 1967 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=31.22;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2000,177,0 chrII 186424 . A G 1686 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=29.07;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1719,159,0 chrII 186525 . A G 1461 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.10;SB=-8.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1494,132,0 chrII 186623 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=29.14;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1752,150,0 chrII 186648 . C G 2509 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=30.60;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2542,232,0 chrII 186709 . A T 2576 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=33.03;SB=-1.227e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2609,226,0 chrII 186753 . G A 2460 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=31.54;SB=-1.284e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2493,220,0 chrII 186759 . G A 2506 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=31.32;SB=-1.299e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2539,220,0 chrII 186778 . A G 2800 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=32.56;SB=-1.281e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2833,247,0 chrII 186915 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7870;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=28.05;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1660,147,0 chrII 187153 . G A 1685 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.79;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1718,150,0 chrII 187157 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.66;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1806,159,0 chrII 187788 . C T 1912 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.87;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1945,171,0 chrII 187873 . T C 2269 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=29.86;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2302,211,0 chrII 188701 . G A 2360 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.33;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2393,208,0 chrII 188734 . T C 2196 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.50;SB=-1.062e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2229,199,0 chrII 188743 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.45;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2142,187,0 chrII 189163 . A C 1723 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9937;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=30.77;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1756,156,0 chrII 189263 . T C 1988 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=29.24;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2021,175,0 chrII 189739 . G C 1860 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.00;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1893,171,0 chrII 189898 . G A 2301 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=32.41;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2334,205,0 chrII 190027 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=28.38;SB=-1.202e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2190,190,0 chrII 190246 . C T 1860 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.63;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1893,165,0 chrII 190255 . A G 1708 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.95;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1741,156,0 chrII 190308 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.57;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1825,159,0 chrII 190351 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=29.49;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1950,171,0 chrII 190355 . C T 2064 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=31.75;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2097,184,0 chrII 190452 . A G 1818 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=28.41;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1851,162,0 chrII 190737 . A T 2229 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=30.96;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2262,202,0 chrII 190816 . G A 1809 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.08;MQ0=0;QD=31.74;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1842,162,0 chrII 190944 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.89;MQ0=0;QD=32.23;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1548,141,0 chrII 190980 . G C 1230 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=30.00;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1263,114,0 chrII 191084 . T A 1428 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=39.05;MQ0=0;QD=28.56;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1461,135,0 chrII 191087 . A G 243 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.31;MQ0=0;QD=6.57;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:33:276,33,0 chrII 191088 . A G 176.03 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.12;MQ0=0;QD=4.63;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:24:209,24,0 chrII 191090 . T G 93.26 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.12;MQ0=0;QD=2.45;SB=-4.913e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:15:126,15,0 chrII 191091 . G C 66.51 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.12;MQ0=0;QD=1.75;SB=-4.655e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:12:99,12,0 chrII 191207 . T C 1818 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=30.30;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1851,168,0 chrII 191214 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=27.78;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1783,162,0 chrII 191222 . C T 1726 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.58;MQ0=0;QD=26.55;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1759,159,0 chrII 191226 . C T 1789 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=27.52;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1822,165,0 chrII 191228 . C T 1788 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.85;MQ0=0;QD=27.51;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1821,165,0 chrII 191242 . C A 2025 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=26.64;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2058,189,0 chrII 191281 . A G 1875 SnpCluster AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=23.15;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1908,177,0 chrII 191288 . T C 1611 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=21.77;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1644,156,0 chrII 191289 . A G 1606 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=21.70;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1639,156,0 chrII 191294 . C T 1546 SnpCluster AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.61;MQ0=0;QD=20.89;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1579,147,0 chrII 191298 . T A 1452 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.26;MQ0=0;QD=20.17;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1485,138,0 chrII 191304 . C A 1329 SnpCluster AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=18.99;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1362,126,0 chrII 191311 . A C 1368 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=32.74;MQ0=0;QD=20.42;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1401,129,0 chrII 191363 . C T 1508 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.89;MQ0=0;QD=27.42;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1541,138,0 chrII 191377 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=26.36;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1483,138,0 chrII 191424 . T C 880 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=23.16;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:84:913,84,0 chrII 191470 . A T 975 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=29.55;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:87:1008,87,0 chrII 191521 . G C 1430 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=31.09;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1463,135,0 chrII 191528 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=32.43;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1557,138,0 chrII 191751 . C T 1096 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.03;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=53.78;MQ0=0;QD=28.10;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1129,102,0 chrII 191908 . C G 1429 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=28.02;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1462,129,0 chrII 192085 . A G 2668 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.85;MQ0=0;QD=30.67;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2701,241,0 chrII 192289 . G C 1730 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.03;MQ0=0;QD=28.83;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1763,162,0 chrII 192591 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=31.44;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1982,172,0 chrII 193380 . A G 784 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.40;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:72:817,72,0 chrII 193398 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.54;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:1032,90,0 chrII 193450 . T C 864 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=28.80;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:897,81,0 chrII 193664 . T C 1901 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=31.16;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1934,171,0 chrII 193790 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.53;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1132,102,0 chrII 194057 . T C 1383 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.73;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1416,126,0 chrII 194226 . C T 1581 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.602;DP=53;Dels=0.00;FS=4.021;HaplotypeScore=1.9957;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.686;QD=29.83;ReadPosRankSum=0.425;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1614,116,0 chrII 195009 . C T 1691 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=33.16;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1724,150,0 chrII 195168 . A G 1345 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=28.02;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1378,123,0 chrII 195177 . T A 1007 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.57;MQ0=0;QD=22.89;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:1040,93,0 chrII 195180 . C G 901 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.08;MQ0=0;QD=23.10;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:84:934,84,0 chrII 195719 . G A 1251 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=32.08;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1284,111,0 chrII 195759 . T C 1153 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=29.56;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1186,111,0 chrII 195960 . A T 1764 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=32.07;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1797,159,0 chrII 196145 . C A 1584 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=32.33;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1617,138,0 chrII 196155 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=30.98;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1458,129,0 chrII 196260 . G C 1244 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.8300;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=28.27;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1277,114,0 chrII 196417 . A G 1040 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.89;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:1073,93,0 chrII 196581 . G A 1618 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;QD=28.39;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1651,144,0 chrII 196633 . G A 1149 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=27.36;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1182,102,0 chrII 196681 . A G 947 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.39;MQ0=0;QD=31.57;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:87:980,87,0 chrII 196868 . T C 690 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.29;MQ0=0;QD=28.75;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:63:723,63,0 chrII 196964 . A T 505 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.42;MQ0=0;QD=28.06;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:48:538,48,0 chrII 197035 . A G 207.06 filter AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.69;MQ0=0;QD=20.71;SB=-6.629e-02 GT:AD:DP:GQ:PL 1/1:0,10:10:21:240,21,0 chrII 197372 . T C 1844 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=37.00;MQ0=0;QD=29.74;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1877,174,0 chrII 197440 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.78;MQ0=0;QD=30.75;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1724,153,0 chrII 197464 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.61;MQ0=0;QD=27.19;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1175,105,0 chrII 197474 . G C 1035 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.19;MQ0=0;QD=31.36;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1068,96,0 chrII 197588 . C G 685 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;QD=28.54;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:66:718,66,0 chrII 197703 . T A 132.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DP=34;Dels=0.00;FS=9.294;HaplotypeScore=4.9608;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;MQRankSum=-1.733;QD=3.88;ReadPosRankSum=1.223;SB=-8.807e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:21:165,21,0 chrII 197706 . C A 86.26 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.03;FS=0.000;HaplotypeScore=14.9688;MLEAC=2;MLEAF=1.00;MQ=29.27;MQ0=0;QD=2.54;SB=-1.003e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:15:119,15,0 chrII 197761 . G A 1217 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=25.89;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1250,114,0 chrII 197836 . C G 1373 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=28.37;MQ0=3;QD=27.46;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1406,129,0 chrII 197842 . T G 1217 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=3;QD=28.30;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1250,117,0 chrII 197966 . A C 129.26 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.20;MQ0=0;QD=3.15;SB=-4.593e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:15:162,15,0 chrII 198029 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.8963;MLEAC=2;MLEAF=1.00;MQ=52.19;MQ0=0;QD=22.47;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1516,135,0 chrII 198085 . G C 1989 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.95;MQ0=0;QD=30.60;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2022,180,0 chrII 198086 . T C 1970 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=29.85;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2003,180,0 chrII 198093 . A G 1752 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.98;MQ0=0;QD=29.20;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1785,159,0 chrII 198095 . A G 1728 SnpCluster AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=27.87;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1761,159,0 chrII 198168 . C T 1645 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.55;MQ0=0;QD=29.37;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1678,147,0 chrII 198180 . C T 1644 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.66;MQ0=0;QD=28.84;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1677,147,0 chrII 198368 . A C 825 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=30.56;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:78:858,78,0 chrII 198512 . A G 2015 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9847;MLEAC=2;MLEAF=1.00;MQ=53.13;MQ0=0;QD=31.00;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2048,181,0 chrII 198526 . A G 1647 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.9913;MLEAC=2;MLEAF=1.00;MQ=52.85;MQ0=0;QD=31.08;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1680,153,0 chrII 198605 . C T 1465 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=32.56;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1498,129,0 chrII 198672 . C T 1282 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=30.52;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1315,114,0 chrII 198751 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=30.84;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1359,120,0 chrII 198782 . C T 1829 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=30.48;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1862,162,0 chrII 198826 . A G 1565 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=28.45;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1598,144,0 chrII 199390 . T C 1500 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.41;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1533,135,0 chrII 199391 . A C 1445 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=28.90;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1478,135,0 chrII 199514 . C T 2221 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=32.66;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2254,196,0 chrII 199575 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=31.11;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1744,156,0 chrII 199762 . A C 1960 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=29.25;SB=-1.090e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1993,174,0 chrII 199961 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=28.93;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1624,144,0 chrII 200008 . C T 1827 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=28.11;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1860,162,0 chrII 200076 . G A 2149 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=27.55;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2182,190,0 chrII 200483 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.92;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2008,175,0 chrII 200522 . A G 1408 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=29.96;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1441,132,0 chrII 200530 . G T 1654 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.81;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1687,150,0 chrII 201365 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=28.95;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1944,180,0 chrII 201476 . G A 2333 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=33.33;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2366,208,0 chrII 201611 . T C 2053 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.3390;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=29.33;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2086,187,0 chrII 201647 . C T 2158 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.28;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2191,187,0 chrII 201831 . G A 1393 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=30.96;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1426,123,0 chrII 201879 . C T 1576 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.27;SB=-1.021e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1609,141,0 chrII 202001 . G C 1552 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.43;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1585,144,0 chrII 202108 . A T 2491 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=31.14;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2524,220,0 chrII 202227 . T A 1909 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.30;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1942,171,0 chrII 202411 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=29.79;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1165,102,0 chrII 202580 . C G 2655 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=30.87;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2688,238,0 chrII 202724 . T C 1506 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.42;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1539,138,0 chrII 203114 . C T 2184 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=30.33;SB=-1.191e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2217,196,0 chrII 203566 . T C 1382 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=27.10;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1415,126,0 chrII 203783 . G C 1489 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6809;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=27.57;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1522,138,0 chrII 203910 . C G 682 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=17.95;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:69:715,69,0 chrII 204137 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=30.81;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2005,178,0 chrII 204179 . T C 1461 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.22;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1494,138,0 chrII 204182 . T C 1471 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.84;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1504,135,0 chrII 204215 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.64;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1718,153,0 chrII 204404 . C T 1722 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=30.75;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1755,153,0 chrII 204458 . C T 1805 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=32.23;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1838,156,0 chrII 204536 . A G 1367 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.79;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1400,126,0 chrII 205151 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.4509;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=32.34;SB=-1.069e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2135,187,0 chrII 205157 . C A 1906 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=31.25;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1939,171,0 chrII 205382 . T C 1269 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=29.51;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1302,120,0 chrII 205517 . C A 2285 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=29.68;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2318,202,0 chrII 205559 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=30.44;SB=-1.233e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2742,241,0 chrII 205725 . G A 1153 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=52.79;MQ0=0;QD=27.45;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:1186,105,0 chrII 205891 . T C 1819 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.99;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1852,171,0 chrII 206076 . C G 1841 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=31.20;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1874,165,0 chrII 207151 . C A 2145 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=33.00;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2178,190,0 chrII 207220 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=31.07;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2177,193,0 chrII 207412 . C A 1567 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=33.34;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1600,138,0 chrII 207859 . A G 1403 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.50;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1436,129,0 chrII 209245 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.07;MQ0=0;QD=31.60;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1297,117,0 chrII 209360 . C T 1790 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=29.34;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1823,156,0 chrII 209402 . T G 1616 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=30.49;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1649,144,0 chrII 209828 . C A 1419 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=29.56;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1452,126,0 chrII 210249 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.24;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1558,144,0 chrII 210285 . G T 1494 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.29;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1527,135,0 chrII 210387 . A G 1551 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.29;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1584,141,0 chrII 210582 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.86;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1347,123,0 chrII 210974 . T C 1309 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.44;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1342,120,0 chrII 210990 . G A 1353 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1386,120,0 chrII 211191 . C G 1291 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1324,117,0 chrII 211332 . G A 983 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:1016,87,0 chrII 211581 . C T 1305 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=4.472;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;MQRankSum=0.660;QD=31.07;ReadPosRankSum=1.485;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:1338,117,0 chrII 212810 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=28.69;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1984,177,0 chrII 212882 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=29.11;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1867,168,0 chrII 212886 . C G 1868 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=30.13;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1901,171,0 chrII 213058 . C T 975 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.68;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:1008,90,0 chrII 213466 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=29.47;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1153,102,0 chrII 213697 . G A 1758 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=29.80;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1791,156,0 chrII 213728 . T G 1564 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=28.96;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1597,141,0 chrII 213823 . A T 1931 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.18;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1964,174,0 chrII 214051 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.49;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1527,132,0 chrII 214711 . G A 1537 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.02;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1570,138,0 chrII 214810 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.90;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2101,181,0 chrII 215962 . G A 887 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=27.72;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:920,84,0 chrII 215966 . G A 931 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=29.09;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:964,84,0 chrII 215989 . G A 684 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=32.57;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:63:717,63,0 chrII 216520 . A G 1444 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;MQRankSum=0.713;QD=28.31;ReadPosRankSum=-1.325;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1477,132,0 chrII 216541 . A C 1576 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.74;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1609,144,0 chrII 216631 . A G 1381 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=57.80;MQ0=0;QD=30.69;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1414,123,0 chrII 216794 . T C 1487 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.35;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1520,141,0 chrII 217015 . G C 1919 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=32.53;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1952,171,0 chrII 217070 . C T 1491 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=32.41;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1524,135,0 chrII 217109 . T C 1236 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.87;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1269,114,0 chrII 217360 . T A 1513 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.52;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1546,135,0 chrII 217636 . A G 1834 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=30.07;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1867,168,0 chrII 217672 . C T 1726 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=28.30;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1759,153,0 chrII 217676 . C T 1802 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=1.670;QD=31.61;ReadPosRankSum=0.247;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:1,55:57:99:1835,159,0 chrII 218039 . A G 973 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.62;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:1006,87,0 chrII 218393 . G C 1208 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.97;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1241,111,0 chrII 218507 . T C 1502 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=31.29;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1535,135,0 chrII 218666 . G A 2368 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=32.89;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2401,208,0 chrII 218957 . G A 1852 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.93;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1885,168,0 chrII 219897 . G A 1535 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=31.33;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1568,138,0 chrII 220055 . C T 1610 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.38;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1643,141,0 chrII 220064 . T A 1630 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.35;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1663,144,0 chrII 220122 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=29.39;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1679,150,0 chrII 220136 . C T 1526 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.3046;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=29.35;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1559,135,0 chrII 220216 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.72;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1449,129,0 chrII 220331 . C T 1831 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.36;MQ0=0;QD=31.03;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1864,162,0 chrII 220403 . A G 1876 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=29.31;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1909,168,0 chrII 220405 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.28;MQ0=0;QD=30.52;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1986,174,0 chrII 220424 . A C 1640 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.90;MQ0=0;QD=29.82;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1673,150,0 chrII 220451 . T G 1623 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=55.36;MQ0=0;QD=30.06;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1656,153,0 chrII 220776 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.84;MQ0=0;QD=30.58;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1348,120,0 chrII 220790 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.88;MQ0=0;QD=32.39;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1620,144,0 chrII 220911 . G T 1612 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=31.61;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1645,144,0 chrII 220914 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.87;MQ0=0;QD=31.37;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1633,144,0 chrII 221324 . T A 34.77 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.69;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:66,6,0 chrII 221330 . A G 165.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.64;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:198,18,0 chrII 221349 . C G 168.13 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.02;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:201,18,0 chrII 221350 . T A 168.13 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.02;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:201,18,0 chrII 221354 . C A 168.13 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.02;SB=-1.076e-01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:201,18,0 chrII 226965 . G A 336 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.00;MQ0=0;QD=7.64;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:33:369,33,0 chrII 226979 . T C 502 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.15;MQ0=0;QD=10.04;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:48:535,48,0 chrII 227201 . C T 2048 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.03;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=51.42;MQ0=0;QD=30.12;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2081,181,0 chrII 227302 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.75;MQ0=0;QD=29.29;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1673,150,0 chrII 227328 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=32.53;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2050,183,0 chrII 227387 . A T 1860 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=31.53;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1893,162,0 chrII 227881 . T C 2319 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=27.28;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2352,214,0 chrII 228106 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=31.07;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1835,162,0 chrII 228142 . A G 1767 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=29.95;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1800,159,0 chrII 228251 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=27.87;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1594,141,0 chrII 228551 . C T 2189 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.68;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2222,193,0 chrII 228581 . A G 2275 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2308,202,0 chrII 228645 . C T 2125 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.72;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2158,190,0 chrII 229777 . T C 2363 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.69;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2396,214,0 chrII 230037 . A T 1183 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.51;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1216,108,0 chrII 230255 . C T 1761 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.45;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1794,156,0 chrII 230576 . A G 1677 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=30.49;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1710,156,0 chrII 230849 . A G 1604 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.08;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1637,144,0 chrII 231614 . A G 1767 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=30.47;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1800,156,0 chrII 231704 . A G 1085 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=31.00;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1118,96,0 chrII 231837 . A G 1994 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=24.62;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2027,181,0 chrII 232488 . A T 952 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.20;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:985,87,0 chrII 232618 . C T 1917 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=27.78;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1950,171,0 chrII 233125 . A G 1813 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.73;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1846,162,0 chrII 233405 . C T 1998 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.22;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2031,181,0 chrII 233983 . A G 981 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.535;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=2.8422;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.743;QD=27.25;ReadPosRankSum=0.743;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:64:1014,64,0 chrII 234340 . T C 2520 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.50;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2553,226,0 chrII 234385 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.09;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1886,165,0 chrII 234604 . T C 1746 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.18;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1779,162,0 chrII 234613 . T A 1864 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.70;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1897,168,0 chrII 234673 . G A 1965 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.21;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1998,175,0 chrII 234856 . C G 1568 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.36;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1601,144,0 chrII 235113 . C T 1966 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=30.72;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1999,175,0 chrII 235634 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.23;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1580,138,0 chrII 235845 . A G 33.77 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=0.91;SB=-5.118e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:6:65,6,0 chrII 236156 . C T 1298 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=30.19;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1331,117,0 chrII 236256 . T A 1013 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=28.94;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:93:1046,93,0 chrII 236313 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=29.32;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1411,123,0 chrII 236383 . G A 1621 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.54;MQ0=0;QD=32.42;SB=-3.350e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1654,147,0 chrII 236390 . G A 1622 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.74;MQ0=0;QD=30.04;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1655,147,0 chrII 236391 . G A 1622 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=44.40;MQ0=0;QD=30.60;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1655,147,0 chrII 236441 . T A 1384 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.19;MQ0=0;QD=29.45;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1417,126,0 chrII 236489 . C A 1025 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=29.29;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:1058,93,0 chrII 236626 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=32.27;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1937,165,0 chrII 237151 . A G 1111 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=27.10;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1144,105,0 chrII 237541 . C T 1186 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=31.21;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1219,105,0 chrII 237656 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=30.87;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1638,141,0 chrII 237660 . T C 1575 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=31.50;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1608,144,0 chrII 237729 . A G 1120 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=31.11;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1153,105,0 chrII 237971 . A T 2301 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=30.28;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2334,205,0 chrII 238080 . G C 1355 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=30.80;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1388,126,0 chrII 238111 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.98;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1228,108,0 chrII 238137 . T C 950 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=27.94;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:983,87,0 chrII 238163 . A T 630 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=28.64;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:57:663,57,0 chrII 238186 . G A 565 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=29.74;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:598,51,0 chrII 238189 . C T 511 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=28.39;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:544,48,0 chrII 238224 . T A 379 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.58;SB=-3.400e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:36:412,36,0 chrII 238239 . G A 382 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.83;SB=-3.400e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:36:415,36,0 chrII 238287 . A C 474 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.60;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:45:507,45,0 chrII 238291 . T C 470 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.67;MQ0=0;QD=29.37;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:45:503,45,0 chrII 238346 . T G 529 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;QD=31.12;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:51:562,51,0 chrII 238452 . A G 1216 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=32.00;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1249,108,0 chrII 238608 . A C 500 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.9970;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=7.35;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:69:533,69,0 chrII 238611 . C T 500 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=7.46;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:69:533,69,0 chrII 238675 . C T 2397 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.84;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2430,217,0 chrII 238737 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.23;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1548,135,0 chrII 238944 . T A 1676 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=32.86;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1709,150,0 chrII 239434 . T A 1343 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=32.76;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1376,120,0 chrII 239528 . A C 1425 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=29.69;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1458,132,0 chrII 239597 . C T 1133 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=29.82;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,37:38:99:1166,102,0 chrII 239605 . T G 1329 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=31.64;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1362,120,0 chrII 239625 . T C 1104 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=30.67;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1137,99,0 chrII 239864 . G A 1386 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=27.18;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1419,120,0 chrII 239949 . A G 1141 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=27.83;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1174,105,0 chrII 239951 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=29.80;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1255,111,0 chrII 240048 . C A 894 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=28.84;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:927,81,0 chrII 240542 . C T 1972 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=32.33;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2005,177,0 chrII 240840 . G A 1731 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=28.38;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1764,153,0 chrII 240963 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.93;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1350,117,0 chrII 241143 . A G 1767 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.55;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1800,165,0 chrII 241196 . C T 1296 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=31.61;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1329,117,0 chrII 241422 . T C 1096 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=29.62;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:99:1129,102,0 chrII 241482 . C T 1263 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=31.57;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1296,114,0 chrII 242012 . T C 1943 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.89;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1976,177,0 chrII 242038 . A G 2073 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.49;SB=-1.100e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2106,187,0 chrII 242434 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.32;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1505,129,0 chrII 242561 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=2.6604;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=31.92;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1661,144,0 chrII 242746 . C G 2009 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.90;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2042,183,0 chrII 243436 . G A 2155 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=31.69;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2188,198,0 chrII 243486 . G A 1569 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.06;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1602,141,0 chrII 243609 . T C 1401 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=27.47;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1434,129,0 chrII 243768 . C T 1758 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=31.96;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1791,156,0 chrII 243846 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=30.09;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1628,141,0 chrII 244011 . A G 1443 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.32;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1476,135,0 chrII 244215 . A G 1910 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.9935;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=29.38;SB=-1.085e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1943,171,0 chrII 244779 . A G 2107 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.92;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2140,187,0 chrII 245034 . C T 2535 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=31.69;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2568,223,0 chrII 245073 . A G 2775 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.53;SB=-1.295e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2808,247,0 chrII 245305 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=31.51;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1577,138,0 chrII 245747 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.16;MQ0=0;QD=18.16;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:96:1050,96,0 chrII 245877 . G A 1337 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.655;DP=45;Dels=0.00;FS=4.771;HaplotypeScore=3.8705;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=-0.731;QD=29.71;ReadPosRankSum=0.577;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:99:1370,117,0 chrII 246027 . T G 1401 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=29.19;SB=-2.400e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1434,126,0 chrII 246059 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=32.38;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1749,153,0 chrII 246172 . G A 1931 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=31.15;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1964,174,0 chrII 246293 . A G 803 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=29.74;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:836,75,0 chrII 246575 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.50;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1482,132,0 chrII 246579 . A C 1347 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.33;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1380,123,0 chrII 246816 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=31.48;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1859,165,0 chrII 246960 . C T 1894 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1927,168,0 chrII 247040 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.67;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1457,126,0 chrII 247234 . A G 1404 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=28.65;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1437,132,0 chrII 247522 . G A 1331 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=28.93;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1364,117,0 chrII 247531 . C T 1292 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=30.76;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1325,117,0 chrII 247603 . A T 1758 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.39;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1791,159,0 chrII 247759 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=32.80;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1837,159,0 chrII 247789 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1706,150,0 chrII 247813 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.13;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2120,184,0 chrII 247993 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.28;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1910,168,0 chrII 248152 . A T 1987 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.12;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2020,177,0 chrII 248212 . A G 1359 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=29.54;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1392,123,0 chrII 248555 . G T 1521 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=32.36;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1554,135,0 chrII 248659 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.59;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1720,150,0 chrII 248671 . C G 1651 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.15;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1684,150,0 chrII 248728 . A G 1257 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=31.42;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1290,114,0 chrII 248918 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.08;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1649,144,0 chrII 249073 . G A 1953 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.50;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1986,174,0 chrII 249533 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=29.86;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1496,135,0 chrII 249570 . G A 1273 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=31.82;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1306,114,0 chrII 250316 . G A 1704 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.98;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1737,153,0 chrII 250774 . C T 1299 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=30.21;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1332,117,0 chrII 251004 . A T 1827 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.11;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1860,162,0 chrII 251105 . T G 1529 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=27.30;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1562,138,0 chrII 251134 . G T 2177 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=29.82;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2210,193,0 chrII 251548 . G A 2030 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=30.76;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2063,181,0 chrII 251790 . C T 878 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.502;DP=30;Dels=0.00;FS=4.357;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=29.27;ReadPosRankSum=1.040;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:81:911,81,0 chrII 251800 . C T 865 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=27.03;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:898,78,0 chrII 251820 . G C 778 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=25.93;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:72:811,72,0 chrII 251879 . A G 1266 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=26.37;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1299,114,0 chrII 251882 . A G 1454 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=27.96;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1487,135,0 chrII 252013 . G A 1925 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7329;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=29.17;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,65:66:99:1958,171,0 chrII 252027 . C T 1709 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=27.13;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1742,153,0 chrII 252036 . C T 1475 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.87;MQ0=0;QD=30.73;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1508,132,0 chrII 252044 . C T 1483 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.17;MQ0=0;QD=29.66;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1516,135,0 chrII 252161 . C G 3056 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=32.17;SB=-1.602e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3089,274,0 chrII 252193 . A G 2248 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.58;MQ0=0;QD=33.06;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2281,199,0 chrII 252572 . T G 1938 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.70;MQ0=0;QD=28.09;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1971,177,0 chrII 252578 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.73;MQ0=0;QD=29.11;SB=-1.008e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2245,199,0 chrII 252589 . T C 2025 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=27.74;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2058,184,0 chrII 252599 . T C 2339 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.14;MQ0=0;QD=29.24;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2372,223,0 chrII 252680 . A G 2151 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.06;MQ0=0;QD=30.73;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2184,202,0 chrII 252704 . G T 2307 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7873;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=30.76;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2340,205,0 chrII 252792 . T G 1171 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=26.61;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1204,111,0 chrII 253095 . C T 2463 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.6316;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=32.84;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2496,220,0 chrII 253219 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=31.79;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1813,156,0 chrII 253709 . G A 1607 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=30.90;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1640,144,0 chrII 254030 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.78;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1880,162,0 chrII 254124 . T C 2499 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.01;FS=0.000;HaplotypeScore=11.1593;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=28.40;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2532,235,0 chrII 254349 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.37;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1878,162,0 chrII 254368 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.57;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1576,138,0 chrII 254409 . C T 1078 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=28.37;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1111,96,0 chrII 254436 . T C 873 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=28.16;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:906,81,0 chrII 254834 . A G 2141 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=31.96;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2174,196,0 chrII 254899 . T A 1399 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.77;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1432,126,0 chrII 255058 . A G 1259 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.98;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1292,114,0 chrII 255127 . A G 1725 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.80;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1758,153,0 chrII 255469 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.68;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1966,174,0 chrII 255688 . T A 1754 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=28.29;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1787,156,0 chrII 255740 . G A 1820 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=30.85;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1853,165,0 chrII 255743 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=28.58;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1748,162,0 chrII 255828 . T C 937 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=29.28;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:970,84,0 chrII 256267 . C A 1555 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=33.09;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1588,138,0 chrII 256925 . T C 1367 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.63;MQ0=0;QD=27.90;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1400,129,0 chrII 256941 . A T 1469 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.60;MQ0=0;QD=28.25;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1502,132,0 chrII 257176 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=29.77;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1700,153,0 chrII 257430 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.50;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1272,111,0 chrII 257565 . T C 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.774;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.8928;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=1.659;QD=31.55;ReadPosRankSum=-0.922;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1516,132,0 chrII 257913 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1701,150,0 chrII 258153 . T C 1576 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=28.65;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1609,144,0 chrII 258208 . A C 1357 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=28.87;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1390,123,0 chrII 258211 . A G 1365 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=29.04;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1398,123,0 chrII 258313 . G C 1464 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.299;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=0.717;QD=25.24;ReadPosRankSum=0.538;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1497,104,0 chrII 258409 . C A 1105 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.21;MQ0=0;QD=29.86;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1138,99,0 chrII 258653 . C T 1185 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.80;MQ0=0;QD=32.03;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1218,105,0 chrII 258667 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=30.05;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1235,111,0 chrII 258757 . T C 466 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=27.41;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:45:499,45,0 chrII 258758 . T C 464 SnpCluster AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.36;MQ0=0;QD=27.29;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:45:497,45,0 chrII 258767 . A T 366 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.41;MQ0=0;QD=28.15;SB=-9.800e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:36:399,36,0 chrII 258778 . C T 265.01 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.53;MQ0=0;QD=26.50;SB=-6.399e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:27:298,27,0 chrII 258785 . A G 168.13 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=21.02;SB=-3.007e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:18:201,18,0 chrII 258915 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.44;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:57,6,0 chrII 258918 . G A 34.77 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.69;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,4:4:6:66,6,0 chrII 258926 . A C 63.97 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.33;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:96,9,0 chrII 258934 . A G 61.97 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.16;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:94,9,0 chrII 258936 . G A 64.97 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.41;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:97,9,0 chrII 258938 . G A 64.97 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.41;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:97,9,0 chrII 258940 . G A 53.97 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=4.50;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:0,12:12:9:86,9,0 chrII 258967 . C T 38.97 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=2.60;SB=-9.815e-01 GT:AD:DP:GQ:PL 1/1:0,15:15:9:71,9,0 chrII 266218 . C A 333 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.48;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:366,33,0 chrII 266221 . T C 330 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=11.38;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:0,29:29:33:363,33,0 chrII 266223 . G A 323 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=10.77;SB=-3.001e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:33:356,33,0 chrII 266227 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=0.51;SB=-6.077e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:6:47,6,0 chrII 266228 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=0.51;SB=-6.077e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:6:47,6,0 chrII 266233 . C T 393 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=10.92;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:39:426,39,0 chrII 266250 . A T 394 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.79;MQ0=0;QD=10.94;SB=-5.901e+01 GT:AD:DP:GQ:PL 1/1:0,36:36:39:427,39,0 chrII 266324 . T C 940 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.582;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=43.52;MQ0=0;MQRankSum=-1.272;QD=23.50;ReadPosRankSum=-0.155;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:51:973,51,0 chrII 266331 . A G 1010 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.163;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=44.21;MQ0=0;MQRankSum=-1.405;QD=26.58;ReadPosRankSum=0.490;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:2,36:38:58:1043,58,0 chrII 266339 . T A 1077 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.645;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.88;MQ0=0;MQRankSum=-1.893;QD=26.92;ReadPosRankSum=1.582;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:2,38:40:64:1110,64,0 chrII 266351 . C G 1042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.878;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.58;MQ0=0;MQRankSum=-1.483;QD=25.41;ReadPosRankSum=2.209;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:61:1075,61,0 chrII 266358 . C G 1070 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.213;DP=40;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;MQRankSum=-1.040;QD=26.75;ReadPosRankSum=1.559;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:76:1103,76,0 chrII 266478 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.62;MQ0=0;QD=30.22;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1242,108,0 chrII 266551 . C G 1226 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.88;MQ0=0;QD=30.65;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1259,111,0 chrII 266590 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.05;MQ0=0;QD=32.06;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1732,150,0 chrII 266718 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.91;MQ0=0;QD=31.51;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1640,144,0 chrII 266773 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;QD=32.00;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1473,129,0 chrII 266791 . G A 1527 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.30;MQ0=0;QD=30.54;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1560,135,0 chrII 267105 . T C 1965 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.19;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1998,175,0 chrII 267339 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=33.50;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1440,126,0 chrII 267510 . C T 2112 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=31.52;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2145,187,0 chrII 267673 . T C 1613 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.43;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1646,150,0 chrII 268100 . G A 2728 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.72;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2761,241,0 chrII 268319 . A G 1601 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.79;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1634,150,0 chrII 268644 . G T 2198 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=30.96;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2231,196,0 chrII 268844 . C G 1262 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=26.29;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1295,114,0 chrII 268895 . G A 1641 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=28.79;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1674,147,0 chrII 268913 . G A 1802 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=28.16;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1835,165,0 chrII 268925 . C T 1879 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=29.83;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1912,168,0 chrII 268930 . A G 1666 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.76;MQ0=0;QD=26.44;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1699,153,0 chrII 268949 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.90;MQ0=0;QD=27.13;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1715,162,0 chrII 269066 . A G 1917 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.49;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1950,171,0 chrII 269255 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.13;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1449,129,0 chrII 269653 . C T 1534 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=30.68;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1567,135,0 chrII 269986 . G A 1775 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=31.70;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1808,159,0 chrII 270169 . C T 1959 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.10;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1992,175,0 chrII 270315 . G T 1411 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.66;MQ0=0;QD=28.80;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1444,129,0 chrII 270474 . C A 554.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.620;DP=62;Dels=0.00;FS=5.162;HaplotypeScore=4.5831;MLEAC=1;MLEAF=0.500;MQ=50.50;MQ0=0;MQRankSum=-3.402;QD=8.94;ReadPosRankSum=-0.431;SB=-3.630e+02 GT:AD:DP:GQ:PL 0/1:34,28:62:99:584,0,894 chrII 270477 . C T 557.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.210;DP=66;Dels=0.00;FS=10.444;HaplotypeScore=5.4152;MLEAC=1;MLEAF=0.500;MQ=48.40;MQ0=0;MQRankSum=-3.970;QD=8.44;ReadPosRankSum=-0.283;SB=-3.670e+02 GT:AD:DP:GQ:PL 0/1:31,35:66:99:587,0,817 chrII 270480 . T C 555.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.745;DP=65;Dels=0.02;FS=10.775;HaplotypeScore=4.5831;MLEAC=1;MLEAF=0.500;MQ=48.35;MQ0=0;MQRankSum=-3.844;QD=8.54;ReadPosRankSum=0.472;SB=-3.590e+02 GT:AD:DP:GQ:PL 0/1:29,35:64:99:585,0,784 chrII 270513 . A G 105.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819;DP=63;Dels=0.00;FS=1.421;HaplotypeScore=2.3548;MLEAC=1;MLEAF=0.500;MQ=48.27;MQ0=0;MQRankSum=-0.599;QD=1.67;ReadPosRankSum=-3.997;SB=-4.501e+01 GT:AD:DP:GQ:PL 0/1:54,9:63:99:135,0,1219 chrII 270516 . A G 66.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125;DP=65;Dels=0.00;FS=1.493;HaplotypeScore=3.1435;MLEAC=1;MLEAF=0.500;MQ=48.67;MQ0=0;MQRankSum=-0.889;QD=1.02;ReadPosRankSum=-4.123;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:57,8:65:96:96,0,1282 chrII 271427 . C T 2092 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.69;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2125,184,0 chrII 271526 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=31.64;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1805,156,0 chrII 271598 . C T 2219 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.63;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2252,199,0 chrII 271718 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=30.80;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2220,193,0 chrII 271912 . G A 1591 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=30.02;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1624,144,0 chrII 271982 . A G 993 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=3.1000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=23.64;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:1026,96,0 chrII 272234 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.67;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1458,132,0 chrII 272984 . A G 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.664;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.257;QD=30.33;ReadPosRankSum=-1.529;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1580,109,0 chrII 273289 . G A 2837 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=31.18;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2870,259,0 chrII 273293 . C T 2256 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=31.33;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2289,202,0 chrII 273735 . G A 1778 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=29.15;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1811,156,0 chrII 273921 . A T 1210 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=30.25;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1243,111,0 chrII 273951 . A G 1363 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.63;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1396,126,0 chrII 274067 . A T 973 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.62;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:1006,87,0 chrII 274372 . G A 483 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.68;MQ0=0;QD=11.23;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:45:516,45,0 chrII 274383 . G A 312 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.49;MQ0=0;QD=8.43;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:30:345,30,0 chrII 274494 . G A 928 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=29.94;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:961,84,0 chrII 274728 . A G 1998 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=30.27;SB=-7.960e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2031,186,0 chrII 275384 . T A 2597 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=32.06;SB=-1.201e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2630,232,0 chrII 275737 . T C 1827 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=29.47;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1860,165,0 chrII 276052 . T C 1695 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=4.393;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=1.669;QD=30.82;ReadPosRankSum=-0.472;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1728,150,0 chrII 276361 . A G 2042 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.03;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2075,186,0 chrII 276492 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.27;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1486,132,0 chrII 276799 . C G 2044 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=29.20;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2077,186,0 chrII 277277 . C T 1261 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=25.22;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1294,114,0 chrII 277780 . A G 1976 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.37;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2009,180,0 chrII 278591 . C T 1614 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=28.32;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1647,147,0 chrII 278605 . C A 1693 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=31.35;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1726,150,0 chrII 278769 . T G 1867 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=30.11;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1900,165,0 chrII 278884 . G C 1778 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=31.75;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1811,159,0 chrII 278889 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=31.06;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1617,141,0 chrII 278927 . A G 1494 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=32.48;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1527,138,0 chrII 278954 . C A 1515 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=33.67;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1548,135,0 chrII 279162 . G T 1726 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=29.76;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1759,150,0 chrII 279446 . A T 1788 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=2.3391;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.83;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1821,159,0 chrII 279910 . T C 1803 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=30.05;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1836,159,0 chrII 280091 . T C 2226 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=30.49;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2259,196,0 chrII 280263 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=30.22;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1242,111,0 chrII 280684 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=41.8612;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=30.77;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1756,153,0 chrII 280810 . A C 2039 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.99;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2072,184,0 chrII 283292 . T A 1480 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=30.83;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1513,132,0 chrII 283431 . A C 2168 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.11;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2201,193,0 chrII 283487 . A G 1682 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.58;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1715,153,0 chrII 283573 . C T 1809 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.18;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1842,162,0 chrII 283729 . G C 2305 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=32.01;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2338,208,0 chrII 284280 . G A 1821 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.619;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.392;QD=29.85;ReadPosRankSum=1.278;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1854,162,0 chrII 284437 . G T 1419 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.00;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1452,129,0 chrII 285109 . A G 1460 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=31.74;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1493,132,0 chrII 471963 . C T 2441 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.12;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2474,217,0 chrII 492970 . C A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.118;DP=60;Dels=0.03;FS=74.323;HaplotypeScore=8.2656;MLEAC=1;MLEAF=0.500;MQ=58.49;MQ0=0;MQRankSum=-0.107;QD=0.17;ReadPosRankSum=-3.402;SB=4.350e-03 GT:AD:DP:GQ:PL 0/1:49,9:58:40:40,0,439 chrII 698648 . A T 1769 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.04;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1802,159,0 chrII 698907 . A G 1983 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=30.98;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2016,181,0 chrII 698958 . T C 2232 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=32.35;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2265,202,0 chrII 699308 . T C 1380 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.67;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1413,126,0 chrII 699380 . G A 1907 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6918;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=30.27;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1940,177,0 chrII 699560 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=27.31;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1644,147,0 chrII 699675 . T C 1544 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=28.07;SB=-9.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1577,141,0 chrII 699878 . A G 899 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.00;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:932,84,0 chrII 700005 . A G 1011 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=29.74;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,34:34:90:1044,90,0 chrII 700064 . G C 544 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.92;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:51:577,51,0 chrII 700097 . T C 566 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=26.95;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:54:599,54,0 chrII 700199 . A T 537 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=14.13;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,38:38:51:570,51,0 chrII 700223 . G C 807 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=23.74;SB=-1.230e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:75:840,75,0 chrII 700246 . T C 857 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.78;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:78:890,78,0 chrII 700423 . T C 849 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=31.44;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,27:27:78:882,78,0 chrII 700682 . G A 825 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=30.56;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:858,75,0 chrII 700715 . C T 943 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=31.43;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:87:976,87,0 chrII 700736 . G A 1603 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=31.43;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1636,141,0 chrII 701839 . C T 1160 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.98;SB=-1.030e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1193,102,0 chrII 702291 . C T 684 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.09;SB=-1.050e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:63:717,63,0 chrII 702460 . G T 1451 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.24;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1484,129,0 chrII 703537 . G C 603 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=9.42;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:84:636,84,0 chrII 703539 . C A 602 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=10.38;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:84:635,84,0 chrII 704219 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.01;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.38;SB=-1.075e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2025,183,0 chrII 723102 . G C 1220 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.05;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1253,114,0 chrII 723175 . G C 1614 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.89;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1647,147,0 chrII 723232 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1478,129,0 chrII 723385 . G A 1138 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=28.45;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1171,102,0 chrII 723393 . G A 1107 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=29.13;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1140,99,0 chrII 723401 . A G 1138 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.83;MQ0=0;QD=28.45;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1171,102,0 chrII 723419 . G T 940 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.92;MQ0=0;QD=26.86;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:84:973,84,0 chrII 723865 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.87;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1531,132,0 chrII 723949 . G A 1822 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=30.88;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1855,162,0 chrII 724009 . A G 1539 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=32.06;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1572,138,0 chrII 724096 . A G 1073 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=27.51;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:1106,99,0 chrII 724291 . T C 1323 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=30.77;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1356,120,0 chrII 724613 . T G 1343 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.23;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1376,120,0 chrII 724679 . A G 984 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.82;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:1017,90,0 chrII 724784 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=26.65;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1499,135,0 chrII 724872 . G A 1729 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.62;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1762,150,0 chrII 724953 . G A 1119 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.08;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1152,102,0 chrII 725168 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=25.64;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1469,132,0 chrII 725223 . G A 1670 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=32.12;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1703,150,0 chrII 725258 . A G 1658 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.28;SB=-2.980e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1691,150,0 chrII 725754 . C T 1706 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=32.19;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1739,153,0 chrII 726249 . T G 1916 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.374;DP=65;Dels=0.00;FS=11.334;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.652;QD=29.48;ReadPosRankSum=-1.197;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1949,174,0 chrII 726522 . T C 2215 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=33.06;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2248,199,0 chrII 726543 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=31.80;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1750,159,0 chrII 726663 . A C 1433 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.04;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.41;MQ0=0;QD=28.66;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1466,132,0 chrII 726855 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=31.00;SB=-8.950e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2327,205,0 chrII 726888 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=31.62;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2310,205,0 chrII 726985 . C A 2500 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=70.8494;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=30.86;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,80:81:99:2533,226,0 chrII 727120 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=31.82;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1624,144,0 chrII 727163 . A T 2012 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=31.94;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2045,178,0 chrII 727268 . C T 1888 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=30.95;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1921,168,0 chrII 727326 . C T 1807 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=31.16;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1840,159,0 chrII 727581 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=32.38;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1814,159,0 chrII 727716 . A G 2164 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.36;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2197,193,0 chrII 727755 . G A 2388 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.62;SB=-1.096e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2421,208,0 chrII 727844 . G T 1341 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=27.94;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1374,120,0 chrII 727845 . G T 1347 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=29.28;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1380,120,0 chrII 727866 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=29.83;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1465,129,0 chrII 727938 . A G 956 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=28.97;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:989,87,0 chrII 728043 . G A 1302 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=28.30;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1335,117,0 chrII 728070 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=30.28;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1426,129,0 chrII 728076 . C T 1461 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=28.65;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1494,132,0 chrII 728104 . G A 1883 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=30.87;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1916,168,0 chrII 728251 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=29.67;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1457,126,0 chrII 728314 . C T 1347 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=30.61;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1380,123,0 chrII 728328 . C T 1358 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=33.12;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1391,123,0 chrII 728335 . C T 1275 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=31.87;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1308,117,0 chrII 728411 . C T 829 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=27.63;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:862,75,0 chrII 728435 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=31.82;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1465,129,0 chrII 728481 . G A 1528 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=29.38;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1561,138,0 chrII 728495 . A T 1345 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=29.89;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1378,123,0 chrII 728499 . C A 1285 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=29.88;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1318,114,0 chrII 728585 . G C 1219 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=31.26;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1252,111,0 chrII 728613 . A G 1001 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=31.28;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:93:1034,93,0 chrII 728657 . T C 1085 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=31.00;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1118,102,0 chrII 728660 . G A 1173 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=31.70;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1206,108,0 chrII 728914 . C A 1274 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=31.07;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1307,114,0 chrII 728932 . C T 1225 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=32.24;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1258,111,0 chrII 728992 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=29.24;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1144,102,0 chrII 729198 . A G 1276 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.12;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1309,114,0 chrII 729547 . A G 1316 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.10;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1349,120,0 chrII 729640 . G A 1694 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.80;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1727,147,0 chrII 730031 . T C 1714 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=29.55;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1747,153,0 chrII 730059 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=25.53;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1488,132,0 chrII 730165 . T C 1839 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.44;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1872,162,0 chrII 730195 . T C 1937 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9445;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.27;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1970,177,0 chrII 730234 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.00;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1490,132,0 chrII 730392 . C G 1701 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.33;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1734,153,0 chrII 730662 . A G 1352 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.73;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1385,123,0 chrII 730725 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.82;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1882,162,0 chrII 730763 . T C 1392 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.62;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1425,126,0 chrII 730861 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=29.56;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1570,141,0 chrII 730949 . T C 1486 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.62;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1519,138,0 chrIII 706 . T A 31.77 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.20;MQ0=1;QD=7.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,3:4:6:63,6,0 chrIII 717 . T A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;QD=2.65;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:47,6,0 chrIII 718 . C T 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;QD=2.65;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:47,6,0 chrIII 722 . T G 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;QD=2.48;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:46,6,0 chrIII 723 . C A 14.91 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;QD=2.48;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:46,6,0 chrIII 724 . G T 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;QD=2.16;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:44,6,0 chrIII 726 . T A 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.67;MQ0=1;QD=2.16;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:1,5:6:6:44,6,0 chrIII 738 . G A 146.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=24.36;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:179,18,0 chrIII 780 . T C 93.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.38;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:126,12,0 chrIII 793 . C G 156.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=26.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:189,18,0 chrIII 794 . A G 142.13 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,6:6:18:175,18,0 chrIII 816 . C T 64.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:97,9,0 chrIII 818 . A G 64.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.66;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:97,9,0 chrIII 827 . G A 63.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=21.32;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:96,9,0 chrIII 879 . G C 56.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.87;MQ0=0;QD=18.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:89,9,0 chrIII 979 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.27;MQ0=0;QD=2.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIII 980 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.27;MQ0=0;QD=2.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:6:43,6,0 chrIII 990 . A G 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.17;MQ0=0;QD=1.72;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:0,7:7:6:43,6,0 chrIII 1003 . A T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=0;QD=2.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIII 1006 . C T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=0;QD=2.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIII 1023 . A T 12.04 LowQual;filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.29;MQ0=0;QD=2.01;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,6:6:6:43,6,0 chrIII 1287 . A T 126.26 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.03;MQ0=0;QD=12.63;SB=-2.642e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:15:159,15,0 chrIII 1304 . A G 159.13 SnpCluster AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=14.47;SB=-1.377e-01 GT:AD:DP:GQ:PL 1/1:0,11:11:18:192,18,0 chrIII 1308 . T C 155.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.51;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:188,18,0 chrIII 1310 . C T 159.13 SnpCluster AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.91;SB=-1.334e-01 GT:AD:DP:GQ:PL 1/1:0,10:10:18:192,18,0 chrIII 1322 . A G 282 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.14;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:315,30,0 chrIII 1324 . G A 286 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.43;SB=-1.465e-02 GT:AD:DP:GQ:PL 1/1:0,14:14:30:319,30,0 chrIII 1331 . G T 382 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.47;SB=-7.544e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:39:415,39,0 chrIII 1334 . A C 412 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.89;SB=-7.033e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:42:445,42,0 chrIII 1345 . A C 447 filter AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=24.83;SB=-6.759e-03 GT:AD:DP:GQ:PL 1/1:0,18:18:45:480,45,0 chrIII 1358 . G A 522 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=16.4306;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=24.86;SB=-3.101e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:54:555,54,0 chrIII 1361 . A G 619 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=19.3302;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=25.79;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:63:652,63,0 chrIII 1371 . G T 668 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=0;QD=23.86;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:66:701,66,0 chrIII 1397 . C A 761 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=21.74;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:75:794,75,0 chrIII 1480 . G T 779 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.00;MQ0=0;QD=26.86;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:812,78,0 chrIII 1514 . C A 1027 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.083;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;MQRankSum=0.413;QD=24.45;ReadPosRankSum=-0.165;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:81:1060,81,0 chrIII 1533 . G T 971 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.358;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;MQRankSum=0.796;QD=26.24;ReadPosRankSum=-1.077;SB=-5.101e+01 GT:AD:DP:GQ:PL 1/1:1,36:37:68:1004,68,0 chrIII 1680 . G A 793 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=29.37;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:78:826,78,0 chrIII 1752 . C T 848 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.97;MQ0=0;QD=27.35;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:881,84,0 chrIII 1857 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=29.31;SB=-2.780e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1440,135,0 chrIII 2042 . T G 1887 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;MQRankSum=-0.812;QD=29.48;ReadPosRankSum=-1.462;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1920,180,0 chrIII 2077 . C A 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.613;DP=58;Dels=0.00;FS=3.485;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.10;MQ0=0;MQRankSum=-0.478;QD=29.50;ReadPosRankSum=1.613;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1744,140,0 chrIII 2080 . T C 1651 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.119;DP=58;Dels=0.00;FS=3.485;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;MQRankSum=-1.254;QD=28.47;ReadPosRankSum=1.493;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1684,137,0 chrIII 2098 . G A 1067 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.794;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.97;MQ0=0;MQRankSum=-0.722;QD=22.23;ReadPosRankSum=0.072;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:98:1100,98,0 chrIII 2101 . A G 1063 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.585;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.23;MQ0=0;MQRankSum=-0.700;QD=22.62;ReadPosRankSum=-0.332;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:97:1096,97,0 chrIII 2139 . A G 627 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;MQRankSum=-1.733;QD=25.08;ReadPosRankSum=-0.901;SB=-2.529e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:37:660,37,0 chrIII 2156 . A T 1030 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.94;MQ0=0;MQRankSum=-1.111;QD=26.41;ReadPosRankSum=-0.844;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:73:1063,73,0 chrIII 2177 . A G 818 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.25;MQ0=0;QD=24.06;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:851,81,0 chrIII 2198 . C A 824 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.97;MQ0=0;QD=22.89;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:81:857,81,0 chrIII 2213 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=24.40;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1180,114,0 chrIII 2227 . A G 1194 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=23.88;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1227,117,0 chrIII 2254 . C T 1239 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=27.53;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1272,120,0 chrIII 2256 . C T 1242 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.43;MQ0=0;QD=27.60;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1275,120,0 chrIII 2314 . G A 1440 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=57.37;MQ0=0;QD=29.39;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1473,138,0 chrIII 2326 . A T 1294 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.9916;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=28.13;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1327,123,0 chrIII 2362 . G T 1406 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=26.04;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1439,135,0 chrIII 2410 . T G 1476 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.07;MQ0=0;QD=28.38;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1509,141,0 chrIII 2422 . T G 1533 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=27.87;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1566,147,0 chrIII 2449 . C G 1290 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=27.45;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1323,126,0 chrIII 2478 . T C 1147 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=26.07;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1180,111,0 chrIII 2493 . T C 990 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.413;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=-0.248;QD=23.57;ReadPosRankSum=1.403;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:71:1023,71,0 chrIII 2533 . T C 1335 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.102;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.57;MQ0=0;MQRankSum=-1.257;QD=26.18;ReadPosRankSum=-1.732;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1368,103,0 chrIII 2554 . G A 1578 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.90;MQ0=0;MQRankSum=0.650;QD=24.66;ReadPosRankSum=-0.325;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1611,125,0 chrIII 2566 . A G 1450 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.294;DP=53;Dels=0.00;FS=3.093;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;MQRankSum=-1.732;QD=27.36;ReadPosRankSum=0.817;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1483,112,0 chrIII 2705 . A G 1123 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=27.39;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1156,111,0 chrIII 2730 . T C 1270 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=27.61;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1303,126,0 chrIII 2739 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=29.34;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1500,141,0 chrIII 2801 . G A 1420 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=30.21;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1453,138,0 chrIII 2869 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=29.73;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1133,105,0 chrIII 3046 . C T 1199 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=27.88;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1232,111,0 chrIII 3050 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=25.79;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:1,42:43:99:1142,102,0 chrIII 3079 . G T 1334 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=29.64;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1367,126,0 chrIII 3199 . C A 1190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.431;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=54.33;MQ0=0;MQRankSum=-1.657;QD=25.87;ReadPosRankSum=-1.205;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:91:1223,91,0 chrIII 3241 . C T 836 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.625;DP=32;Dels=0.00;FS=3.291;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;MQRankSum=-0.325;QD=26.12;ReadPosRankSum=0.542;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:1,31:32:54:869,54,0 chrIII 3274 . A G 654 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.69;MQ0=0;QD=24.22;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:66:687,66,0 chrIII 3279 . A T 669 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=21.58;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:702,66,0 chrIII 3280 . A G 667 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=21.52;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:66:700,66,0 chrIII 3287 . C T 888 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.5115;MLEAC=2;MLEAF=1.00;MQ=34.77;MQ0=0;MQRankSum=1.650;QD=21.14;ReadPosRankSum=-0.660;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:90:921,90,0 chrIII 3290 . T G 943 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.5115;MLEAC=2;MLEAF=1.00;MQ=35.42;MQ0=0;QD=21.43;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:93:976,93,0 chrIII 3316 . A G 1016 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.657;DP=46;Dels=0.00;FS=3.617;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.82;MQ0=0;MQRankSum=-0.377;QD=22.09;ReadPosRankSum=1.055;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:76:1049,76,0 chrIII 3340 . A T 1179 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.433;DP=48;Dels=0.00;FS=4.771;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.72;MQ0=0;MQRankSum=0.072;QD=24.56;ReadPosRankSum=-0.144;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:88:1212,88,0 chrIII 3357 . A G 1217 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.752;DP=53;Dels=0.00;FS=5.482;HaplotypeScore=1.5757;MLEAC=2;MLEAF=1.00;MQ=50.58;MQ0=0;MQRankSum=0.425;QD=22.96;ReadPosRankSum=-1.667;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:95:1250,95,0 chrIII 3393 . T C 987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.803;DP=41;Dels=0.00;FS=3.575;HaplotypeScore=2.8242;MLEAC=2;MLEAF=1.00;MQ=56.65;MQ0=0;MQRankSum=1.225;QD=24.07;ReadPosRankSum=0.887;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:71:1020,71,0 chrIII 3488 . C T 951 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=25.70;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:984,90,0 chrIII 3567 . A G 1426 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=28.52;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1459,138,0 chrIII 3597 . T A 1529 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.45;MQ0=0;QD=29.40;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1562,144,0 chrIII 3669 . G A 1408 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.317;DP=50;Dels=0.00;FS=6.198;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.60;MQ0=0;MQRankSum=0.277;QD=28.16;ReadPosRankSum=0.416;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1441,109,0 chrIII 3799 . A G 1831 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.64;MQ0=0;QD=28.17;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1864,174,0 chrIII 3844 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=44.67;MQ0=0;QD=24.90;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1477,138,0 chrIII 3860 . G A 1399 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.78;MQ0=0;QD=26.90;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1432,135,0 chrIII 3880 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.48;MQ0=0;QD=24.78;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1371,132,0 chrIII 3939 . C T 1097 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.14;MQ0=0;QD=29.65;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1130,108,0 chrIII 3941 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.95;MQ0=0;QD=28.64;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1150,111,0 chrIII 3956 . C T 1428 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=31.04;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1461,138,0 chrIII 4035 . A C 1009 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.25;MQ0=0;QD=28.03;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1042,102,0 chrIII 4072 . A G 441 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.94;MQ0=0;QD=22.05;SB=-1.900e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:48:474,48,0 chrIII 4077 . A G 298 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=16.56;SB=-1.910e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:42:331,42,0 chrIII 4080 . T A 331 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=22.07;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:45:364,45,0 chrIII 4081 . G C 364 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=24.27;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:45:397,45,0 chrIII 4083 . G A 417 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=27.80;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:45:450,45,0 chrIII 4084 . G A 412 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.03;MQ0=0;QD=27.47;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:45:445,45,0 chrIII 4093 . T A 97.51 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.83;MQ0=0;QD=3.90;SB=-1.615e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:12:130,12,0 chrIII 4112 . C T 471 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=20.48;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:48:504,48,0 chrIII 4122 . G A 471 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.48;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:48:504,48,0 chrIII 4129 . A T 171.01 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.55;SB=-9.702e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:27:204,27,0 chrIII 4130 . G A 171.01 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.55;SB=-9.402e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:27:204,27,0 chrIII 4133 . G T 171.01 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=8.55;SB=-9.702e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:27:204,27,0 chrIII 4134 . T A 244 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=12.20;SB=-9.201e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:36:277,36,0 chrIII 4150 . G C 346 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.73;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:36:379,36,0 chrIII 4155 . A G 349 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.86;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,22:22:36:382,36,0 chrIII 4161 . C A 380 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=15.83;SB=-1.190e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:39:413,39,0 chrIII 4171 . T C 428 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=15.85;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:45:461,45,0 chrIII 4178 . G C 468 SnpCluster AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=17.33;SB=-1.170e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:48:501,48,0 chrIII 4184 . A C 517 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=21.54;SB=-1.160e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:550,54,0 chrIII 4186 . G A 529 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.60;MQ0=0;QD=22.04;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:562,54,0 chrIII 4197 . G T 522 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.63;MQ0=0;QD=20.08;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:54:555,54,0 chrIII 4238 . C T 786 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.88;MQ0=0;QD=24.56;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:819,78,0 chrIII 4241 . A T 757 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=24.42;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:790,75,0 chrIII 4242 . C T 757 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=24.42;SB=-1.410e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:790,75,0 chrIII 4243 . A T 759 SnpCluster AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.91;MQ0=0;QD=24.48;SB=-1.420e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:792,75,0 chrIII 4262 . A G 522 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=20.08;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:555,72,0 chrIII 4264 . G C 527 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.74;MQ0=0;QD=20.27;SB=-1.480e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:560,72,0 chrIII 4351 . T G 911 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.07;MQ0=0;QD=25.31;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:944,99,0 chrIII 4354 . A T 936 SnpCluster AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.41;MQ0=0;QD=26.74;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:969,99,0 chrIII 4360 . G T 923 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.16;MQ0=0;QD=25.64;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:956,99,0 chrIII 4371 . T C 835 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.97;MQ0=0;QD=23.19;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:868,90,0 chrIII 4395 . G A 810 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.82;MQ0=0;QD=23.82;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,33:34:87:843,87,0 chrIII 4426 . C T 665 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.43;MQ0=0;QD=23.75;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:69:698,69,0 chrIII 4429 . T C 610 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=26.44;MQ0=0;QD=21.03;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,29:29:63:643,63,0 chrIII 4432 . G T 600 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.71;MQ0=0;QD=21.43;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:60:633,60,0 chrIII 4436 . C T 459 SnpCluster AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.31;MQ0=0;QD=19.12;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,24:24:48:492,48,0 chrIII 4440 . T C 382 SnpCluster AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.41;MQ0=0;QD=18.19;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:39:415,39,0 chrIII 4463 . G A 742 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=22.48;SB=-1.950e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:775,75,0 chrIII 4476 . G C 776 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.48;MQ0=0;QD=24.25;SB=-1.560e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:809,78,0 chrIII 4489 . T C 883 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.70;MQ0=0;QD=25.23;SB=-2.900e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:916,87,0 chrIII 4490 . T C 880 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.69;MQ0=0;QD=23.78;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:913,87,0 chrIII 4576 . T C 499 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.19;MQ0=0;QD=24.95;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:51:532,51,0 chrIII 4586 . A G 338 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.93;MQ0=0;QD=19.88;SB=-9.300e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:371,36,0 chrIII 4593 . A G 215.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.01;MQ0=0;QD=16.54;SB=-6.297e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:24:248,24,0 chrIII 4859 . G C 730 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.93;MQ0=18;QD=15.21;SB=-1.610e+02 GT:AD:DP:GQ:PL 1/1:7,41:48:78:763,78,0 chrIII 4925 . T C 790 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.30;MQ0=2;QD=19.75;SB=-3.980e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:81:823,81,0 chrIII 5093 . G T 177.06 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=19.41;MQ0=9;QD=10.42;SB=-9.156e+01 GT:AD:DP:GQ:PL 1/1:2,15:17:21:210,21,0 chrIII 5149 . A T 252 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.62;MQ0=14;QD=9.33;SB=-9.195e+01 GT:AD:DP:GQ:PL 1/1:2,25:27:30:285,30,0 chrIII 5207 . A G 611 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.29;MQ0=11;QD=16.97;SB=-2.000e+02 GT:AD:DP:GQ:PL 1/1:2,34:36:66:644,66,0 chrIII 5277 . T A 806 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.48;MQ0=2;QD=24.42;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:81:839,81,0 chrIII 5520 . A C 207.03 filter AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.82;MQ0=11;QD=10.90;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:19:24:240,24,0 chrIII 5678 . T C 281 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=2;QD=21.62;SB=-1.219e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:30:314,30,0 chrIII 5828 . T C 362 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.11;MQ0=10;QD=14.48;SB=-1.140e+02 GT:AD:DP:GQ:PL 1/1:2,23:25:39:395,39,0 chrIII 5904 . C T 339 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.12;MQ0=7;QD=16.14;SB=-9.300e+01 GT:AD:DP:GQ:PL 1/1:2,19:21:36:372,36,0 chrIII 5975 . A G 344 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=25.07;MQ0=2;QD=20.24;SB=-6.300e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:377,36,0 chrIII 5985 . A G 249.01 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=2;QD=16.60;SB=-6.299e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:27:282,27,0 chrIII 6001 . T C 255.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.71;MQ0=2;QD=19.62;SB=-3.199e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:288,27,0 chrIII 6009 . C T 255.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.71;MQ0=2;QD=19.62;SB=-3.199e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:288,27,0 chrIII 6050 . G C 1021 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.36;MQ0=1;QD=29.17;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1054,99,0 chrIII 6085 . C T 123.06 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=3;QD=2.73;SB=-6.691e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:21:156,21,0 chrIII 6093 . T C 123.06 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.16;MQ0=3;QD=2.73;SB=-6.691e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:21:156,21,0 chrIII 6159 . A T 559 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.91;MQ0=4;QD=23.29;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:54:592,54,0 chrIII 6190 . C T 354 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=3;QD=17.70;SB=-6.300e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:36:387,36,0 chrIII 6221 . G A 290 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=3;QD=16.11;SB=-3.200e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:30:323,30,0 chrIII 6226 . G T 286 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.68;MQ0=2;QD=16.82;SB=-3.200e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:30:319,30,0 chrIII 6250 . C G 124.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.449;DP=19;Dels=0.00;FS=31.460;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.43;MQ0=0;MQRankSum=-0.776;QD=6.54;ReadPosRankSum=0.531;SB=2.82 GT:AD:DP:GQ:PL 1/1:9,10:19:15:157,15,0 chrIII 6251 . C T 128.26 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.307;DP=19;Dels=0.00;FS=31.460;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.43;MQ0=0;MQRankSum=-0.286;QD=6.75;ReadPosRankSum=-1.021;SB=2.84 GT:AD:DP:GQ:PL 1/1:9,10:19:15:161,15,0 chrIII 6256 . C T 97.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.355;DP=18;Dels=0.00;FS=26.454;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.21;MQ0=0;MQRankSum=-1.854;QD=5.42;ReadPosRankSum=-2.031;SB=2.54 GT:AD:DP:GQ:PL 1/1:9,9:18:12:130,12,0 chrIII 6262 . C T 75.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.110;DP=23;Dels=0.00;FS=17.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=0;MQRankSum=-1.606;QD=3.26;ReadPosRankSum=-1.165;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:14,9:23:99:105,0,102 chrIII 6267 . C G 73.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.661;DP=23;Dels=0.00;FS=17.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=0;MQRankSum=1.732;QD=3.17;ReadPosRankSum=3.937;SB=-1.339e+02 GT:AD:DP:GQ:PL 0/1:9,14:23:99:103,0,104 chrIII 6268 . C T 76.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.992;DP=23;Dels=0.00;FS=17.226;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.56;MQ0=0;MQRankSum=1.039;QD=3.30;ReadPosRankSum=3.937;SB=-1.349e+02 GT:AD:DP:GQ:PL 0/1:9,14:23:99:106,0,101 chrIII 6273 . C T 85.05 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.350;DP=19;Dels=0.00;FS=9.863;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=26.06;MQ0=0;MQRankSum=1.450;QD=4.48;ReadPosRankSum=2.950;SB=-1.470e+02 GT:AD:DP:GQ:PL 0/1:4,15:19:17:115,0,17 chrIII 6279 . C T 97.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=6.09;SB=-1.625e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:12:130,12,0 chrIII 6291 . T C 61.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=3.84;SB=-1.565e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:12:94,12,0 chrIII 6293 . G T 61.51 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.94;MQ0=0;QD=3.84;SB=-1.535e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:12:94,12,0 chrIII 6327 . C A 93.51 PASS AC=2;AF=1.00;AN=2;DP=10;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.62;MQ0=0;QD=9.35;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,10:10:12:126,12,0 chrIII 6337 . G A 96.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=12.06;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:129,12,0 chrIII 6389 . G A 163.13 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.09;MQ0=3;QD=10.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:18:196,18,0 chrIII 6401 . G A 193.06 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.45;MQ0=3;QD=10.73;SB=-3.094e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:21:226,21,0 chrIII 6403 . G A 185.06 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.45;MQ0=3;QD=10.28;SB=-3.194e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:21:218,21,0 chrIII 6410 . T C 186.06 SnpCluster AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.45;MQ0=3;QD=10.34;SB=-2.994e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:21:219,21,0 chrIII 6445 . A T 31.77 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=7.7612;MLEAC=2;MLEAF=1.00;MQ=19.74;MQ0=2;QD=2.12;SB=-6.380e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:6:63,6,0 chrIII 6475 . G A 32.77 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=0;QD=6.55;SB=-3.280e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:64,6,0 chrIII 6489 . A G 92.51 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=11.56;SB=-9.355e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:125,12,0 chrIII 6493 . T C 64.97 SnpCluster AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.79;MQ0=0;QD=9.28;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:97,9,0 chrIII 6499 . T C 64.97 SnpCluster AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=8.12;SB=-6.347e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:9:97,9,0 chrIII 6513 . C T 96.51 PASS AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.21;MQ0=0;QD=12.06;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,8:8:12:129,12,0 chrIII 6542 . A G 213.03 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=16.39;SB=-9.191e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:24:246,24,0 chrIII 6617 . G A 856 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.91;MQ0=2;QD=21.95;SB=-1.600e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:84:889,84,0 chrIII 6727 . G A 869 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=1;QD=19.75;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:90:902,90,0 chrIII 6747 . C T 510 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.30;MQ0=2;QD=15.94;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:2,30:32:54:543,54,0 chrIII 6881 . T C 750 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.79;MQ0=1;QD=20.27;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:75:783,75,0 chrIII 6893 . C T 819 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.53;MQ0=1;QD=21.55;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:81:852,81,0 chrIII 6930 . G A 307 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.51;MQ0=1;QD=19.19;SB=-1.519e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:340,33,0 chrIII 6977 . A G 54.97 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=16.69;MQ0=9;QD=3.93;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:9:87,9,0 chrIII 7025 . A G 132.13 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.17;MQ0=13;QD=5.74;SB=-3.188e+01 GT:AD:DP:GQ:PL 1/1:1,22:23:18:165,18,0 chrIII 7109 . T C 244 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.45;MQ0=19;QD=5.55;SB=-1.327e+02 GT:AD:DP:GQ:PL 1/1:11,33:44:30:277,30,0 chrIII 7787 . C T 1407 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.51;MQ0=2;QD=25.58;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1440,144,0 chrIII 7952 . T C 628 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.88;MQ0=1;QD=23.26;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:69:661,69,0 chrIII 8006 . T C 344 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.96;MQ0=5;QD=13.23;SB=-1.709e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:39:377,39,0 chrIII 8353 . C T 27.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=31.3612;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=6;QD=0.58;SB=-5.538e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:6:59,6,0 chrIII 8528 . T C 1348 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.89;MQ0=1;QD=25.43;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1381,132,0 chrIII 8542 . T C 1306 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.06;MQ0=3;QD=26.65;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1339,129,0 chrIII 8572 . T C 589 filter AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=28.9952;MLEAC=2;MLEAF=1.00;MQ=43.89;MQ0=5;QD=21.81;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,26:27:60:622,60,0 chrIII 8685 . C T 1091 filter AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.89;MQ0=8;QD=19.84;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1124,108,0 chrIII 8696 . G A 1184 filter AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=9;QD=20.41;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1217,117,0 chrIII 8743 . C T 996 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.26;MQ0=4;QD=26.92;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1029,99,0 chrIII 8774 . T C 1193 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.68;MQ0=3;QD=27.74;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1226,120,0 chrIII 8947 . T G 767 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.08;MQ0=1;QD=27.39;SB=-2.760e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:78:800,78,0 chrIII 9265 . G A 1321 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=44.50;MQ0=3;QD=26.42;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1354,129,0 chrIII 9392 . C T 669 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.46;MQ0=3;QD=24.78;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:69:702,69,0 chrIII 9461 . G T 426 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.62;MQ0=4;QD=21.30;SB=-2.701e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:45:459,45,0 chrIII 9739 . A G 817 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=31.62;MQ0=4;QD=22.08;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:87:850,87,0 chrIII 9742 . G A 900 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=32.93;MQ0=3;QD=23.68;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:933,96,0 chrIII 9807 . A G 390 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.37;MQ0=16;QD=11.14;SB=-8.300e+01 GT:AD:DP:GQ:PL 1/1:6,29:35:42:423,42,0 chrIII 10164 . T C 785 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.64;MQ0=4;QD=23.79;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:2,31:33:87:818,87,0 chrIII 10249 . G A 209.03 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.59;MQ0=4;QD=14.93;SB=-8.191e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:24:242,24,0 chrIII 11290 . C T 33.77 filter AC=2;AF=1.00;AN=2;DP=6;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.63;SB=-1.639e+00 GT:AD:DP:GQ:PL 1/1:0,6:6:6:65,6,0 chrIII 11312 . A T 62.97 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.27;MQ0=0;QD=9.00;SB=-6.372e+01 GT:AD:DP:GQ:PL 1/1:0,7:7:9:95,9,0 chrIII 11341 . A G 64.97 PASS AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=12.99;SB=-6.321e+01 GT:AD:DP:GQ:PL 1/1:0,4:5:9:97,9,0 chrIII 11382 . C A 428 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.44;MQ0=0;QD=23.78;SB=-2.100e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:461,48,0 chrIII 11391 . C T 427 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.02;MQ0=0;QD=22.47;SB=-2.090e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:48:460,48,0 chrIII 11416 . A G 392 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=20.63;SB=-1.800e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:45:425,45,0 chrIII 11417 . T C 393 SnpCluster AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.52;MQ0=0;QD=20.68;SB=-1.790e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:45:426,45,0 chrIII 11423 . C T 743 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.44;MQ0=0;QD=26.54;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:78:776,78,0 chrIII 11775 . G T 94.51 filter AC=2;AF=1.00;AN=2;DP=4;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.05;MQ0=0;QD=23.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,4:4:12:127,12,0 chrIII 11782 . T A 61.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.48;MQ0=2;QD=12.39;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,5:5:9:94,9,0 chrIII 13881 . C A 411 filter AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.20;MQ0=21;QD=11.74;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:6,29:35:42:444,42,0 chrIII 13921 . C T 125.26 filter AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.06;MQ0=25;QD=4.18;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:13,17:30:15:158,15,0 chrIII 14001 . C T 729 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=2;QD=28.04;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:2,24:26:72:762,72,0 chrIII 14003 . C T 741 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.17;MQ0=1;QD=29.64;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:1,24:25:72:774,72,0 chrIII 14006 . G A 735 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.05;MQ0=1;QD=25.34;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:1,28:29:72:768,72,0 chrIII 14054 . G A 373 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.29;MQ0=0;QD=19.63;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:39:406,39,0 chrIII 14059 . T C 399 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.29;MQ0=0;QD=21.00;SB=-9.401e+01 GT:AD:DP:GQ:PL 1/1:0,19:19:42:432,42,0 chrIII 14069 . G T 376 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.11;MQ0=0;QD=22.12;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:39:409,39,0 chrIII 14112 . A T 801 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=24.8322;MLEAC=2;MLEAF=1.00;MQ=29.60;MQ0=0;QD=26.70;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:84:834,84,0 chrIII 14139 . G T 623 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=23.96;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:66:656,66,0 chrIII 14147 . A C 629 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=22.7876;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=24.19;SB=-6.401e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:66:662,66,0 chrIII 14185 . C T 375 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.67;MQ0=0;QD=14.42;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,26:26:39:408,39,0 chrIII 14191 . G A 162.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.93;MQ0=0;QD=8.11;SB=-1.291e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:18:195,18,0 chrIII 14222 . C T 320 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.60;MQ0=0;QD=14.55;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:33:353,33,0 chrIII 14229 . G A 433 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.05;MQ0=0;QD=17.32;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:45:466,45,0 chrIII 14289 . T C 1189 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=29.00;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1222,117,0 chrIII 14340 . A T 1723 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=0;QD=30.23;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1756,165,0 chrIII 14353 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=27.59;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1302,123,0 chrIII 14356 . A T 1230 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.84;MQ0=0;QD=26.74;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1263,120,0 chrIII 14435 . C T 952 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=44.27;MQ0=0;QD=28.85;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:985,90,0 chrIII 14469 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=41.09;MQ0=0;QD=27.24;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1259,123,0 chrIII 14479 . A G 1113 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.27;MQ0=0;QD=25.88;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1146,117,0 chrIII 14489 . G T 135.06 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=3.55;SB=-4.661e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:21:168,21,0 chrIII 14490 . C T 135.06 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=3.55;SB=-4.661e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:21:168,21,0 chrIII 14491 . A G 135.06 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.15;MQ0=0;QD=3.55;SB=-4.651e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:21:168,21,0 chrIII 14577 . C T 647 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.57;MQ0=0;QD=25.88;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:1,24:25:66:680,66,0 chrIII 14589 . T C 556 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=17.3971;MLEAC=2;MLEAF=1.00;MQ=39.22;MQ0=0;QD=29.26;SB=-1.570e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:57:589,57,0 chrIII 14619 . T C 594 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;QD=28.29;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:60:627,60,0 chrIII 14620 . T C 591 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.61;MQ0=0;QD=28.14;SB=-6.301e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:60:624,60,0 chrIII 14631 . T A 628 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.36;MQ0=0;QD=29.90;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:63:661,63,0 chrIII 14693 . G T 1212 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.61;MQ0=0;QD=26.35;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1245,117,0 chrIII 14758 . G C 1664 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.27;MQ0=0;QD=27.73;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1697,159,0 chrIII 14793 . A G 1372 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=28.58;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1405,132,0 chrIII 14817 . C T 1567 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=28.49;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1600,150,0 chrIII 14924 . G A 1561 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.86;MQ0=0;QD=28.38;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1594,150,0 chrIII 14993 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.01;MQ0=0;QD=30.05;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1145,108,0 chrIII 15001 . C T 1068 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=28.11;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1101,105,0 chrIII 15004 . G A 1086 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.67;MQ0=0;QD=25.86;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1119,105,0 chrIII 15033 . A C 1065 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.20;MQ0=0;QD=25.36;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1098,105,0 chrIII 15093 . G A 871 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=26.39;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:904,84,0 chrIII 15165 . G A 944 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=30.45;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:93:977,93,0 chrIII 15172 . C T 997 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.14;MQ0=0;QD=30.21;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1030,96,0 chrIII 15182 . C T 872 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=31.14;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:84:905,84,0 chrIII 15242 . T G 1175 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=30.92;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1208,114,0 chrIII 15259 . A G 1379 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=28.73;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1412,135,0 chrIII 15280 . G T 1562 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=31.24;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1595,150,0 chrIII 15335 . G A 1727 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=30.84;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1760,165,0 chrIII 15380 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.39;MQ0=0;QD=28.43;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1426,138,0 chrIII 15382 . A C 1413 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.55;MQ0=0;QD=28.26;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1446,138,0 chrIII 15394 . G A 1186 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.77;MQ0=0;QD=28.93;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1219,114,0 chrIII 15398 . C T 1211 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.85;MQ0=0;QD=26.33;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1244,120,0 chrIII 15430 . T G 1349 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=54.88;MQ0=0;QD=29.33;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1382,132,0 chrIII 15471 . T C 1541 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=27.52;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1574,147,0 chrIII 15478 . T G 1569 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=30.17;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1602,150,0 chrIII 15510 . G A 1584 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=29.89;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1617,150,0 chrIII 15638 . G T 1265 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.91;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1298,120,0 chrIII 15697 . C G 1342 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=29.82;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1375,129,0 chrIII 15846 . G A 1518 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=29.76;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1551,147,0 chrIII 15960 . C T 1677 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=27.49;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1710,159,0 chrIII 16356 . G A 2496 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.691;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.155;QD=29.71;ReadPosRankSum=-1.072;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2529,241,0 chrIII 16476 . A G 1315 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.22;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1348,129,0 chrIII 16545 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.09;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1371,132,0 chrIII 16578 . G A 1379 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.318;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=0.177;QD=28.14;ReadPosRankSum=1.591;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1412,132,0 chrIII 16708 . C T 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.003;QD=28.56;ReadPosRankSum=0.942;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1661,132,0 chrIII 16833 . G A 1127 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.90;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1160,108,0 chrIII 16920 . T C 1581 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.00;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1614,153,0 chrIII 17162 . C G 1624 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=28.49;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1657,156,0 chrIII 17510 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.93;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1904,177,0 chrIII 17635 . C T 2036 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=28.68;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2069,192,0 chrIII 17787 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=29.70;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1934,180,0 chrIII 17917 . A G 1628 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.278;DP=61;Dels=0.00;FS=3.874;HaplotypeScore=4.6500;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;MQRankSum=-0.256;QD=26.69;ReadPosRankSum=-0.994;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1661,139,0 chrIII 18052 . A C 2141 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=28.55;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2174,205,0 chrIII 18173 . G A 1854 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=29.43;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1887,177,0 chrIII 18277 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=28.45;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1626,150,0 chrIII 18342 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=27.77;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1505,144,0 chrIII 18583 . C T 1603 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=28.62;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1636,153,0 chrIII 18613 . T G 1058 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.431;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;MQRankSum=1.431;QD=23.00;ReadPosRankSum=0.301;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:86:1091,86,0 chrIII 18676 . C T 951 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=27.17;SB=-2.550e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:984,90,0 chrIII 18742 . C T 1194 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;MQRankSum=-1.238;QD=28.43;ReadPosRankSum=1.320;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:1227,120,0 chrIII 18757 . G C 1208 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=28.76;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1241,120,0 chrIII 18759 . C T 1215 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.40;MQ0=0;QD=28.93;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1248,120,0 chrIII 18804 . G T 1496 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=51.63;MQ0=0;QD=28.77;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1529,147,0 chrIII 18813 . C G 1580 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.11;MQ0=0;QD=27.24;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1613,153,0 chrIII 18828 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=25.71;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1370,126,0 chrIII 18860 . A T 1316 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=26.32;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1349,120,0 chrIII 19311 . C A 1931 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.15;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1964,183,0 chrIII 19341 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=28.45;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1740,162,0 chrIII 19446 . A T 2162 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=28.08;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2195,208,0 chrIII 19497 . G A 2359 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=3.4034;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=29.86;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2392,226,0 chrIII 19506 . C T 2175 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=29.00;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2208,208,0 chrIII 19524 . G A 1981 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=27.14;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,72:73:99:2014,189,0 chrIII 19605 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=29.47;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1477,135,0 chrIII 19830 . A G 1638 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=28.74;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1671,159,0 chrIII 19865 . G C 1464 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=29.28;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1497,144,0 chrIII 19992 . A G 1971 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=27.37;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:2004,192,0 chrIII 20428 . C T 1184 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=29.60;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1217,114,0 chrIII 20599 . G A 1796 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.81;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1829,171,0 chrIII 20844 . G T 2333 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.70;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2366,220,0 chrIII 20868 . T A 2681 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=29.79;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2714,256,0 chrIII 20894 . G A 2425 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.0588;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=26.36;SB=-1.415e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2458,229,0 chrIII 20982 . C T 2709 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.78;SB=-1.287e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2742,253,0 chrIII 20985 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.41;SB=-1.257e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2621,250,0 chrIII 21055 . G A 1938 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=28.09;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1971,186,0 chrIII 21060 . T A 1831 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=26.54;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1864,177,0 chrIII 21111 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=28.90;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1854,177,0 chrIII 21165 . T C 1253 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=25.06;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1286,123,0 chrIII 21204 . T C 1289 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=28.02;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1322,123,0 chrIII 21491 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.8317;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=28.74;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1901,180,0 chrIII 21591 . C G 1905 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=3.6813;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=27.61;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1938,186,0 chrIII 21650 . A G 2221 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=29.22;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2254,216,0 chrIII 21720 . A G 1117 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=28.64;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1150,111,0 chrIII 21827 . A C 1551 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.29;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1584,150,0 chrIII 21879 . A C 1394 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.81;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1427,135,0 chrIII 21985 . T C 2338 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=28.86;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2371,226,0 chrIII 22016 . T C 2317 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=28.96;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2350,220,0 chrIII 22138 . G T 1247 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=29.69;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1280,123,0 chrIII 22203 . G A 1673 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=26.56;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1706,162,0 chrIII 22290 . C A 2487 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.84;MQ0=0;QD=25.38;SB=-1.303e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:2520,252,0 chrIII 22292 . C A 2476 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.86;MQ0=0;QD=25.53;SB=-1.283e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2509,252,0 chrIII 22397 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.80;MQ0=0;QD=28.08;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1802,168,0 chrIII 22470 . T C 1222 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=29.10;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1255,120,0 chrIII 23002 . A G 1255 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.88;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1288,123,0 chrIII 23032 . G A 810 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.00;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:78:843,78,0 chrIII 23149 . T C 1438 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=2.5367;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=27.65;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1471,138,0 chrIII 23930 . T C 1964 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.88;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1997,189,0 chrIII 24059 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=24.85;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1375,129,0 chrIII 24173 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.18;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1365,129,0 chrIII 24329 . A G 831 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=25.18;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:81:864,81,0 chrIII 24352 . A G 782 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.93;SB=-3.070e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:78:815,78,0 chrIII 24366 . C T 619 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.91;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:652,63,0 chrIII 24492 . T C 1558 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=28.33;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1591,153,0 chrIII 24520 . T C 1577 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.5149;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=26.28;SB=-4.310e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1610,153,0 chrIII 24607 . C T 2305 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=31.15;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2338,217,0 chrIII 24833 . C G 1368 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=29.11;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1401,132,0 chrIII 25125 . C T 1520 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=29.80;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1553,144,0 chrIII 25319 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.56;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1452,138,0 chrIII 25355 . G T 1360 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=29.57;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1393,132,0 chrIII 25463 . T G 1297 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=25.94;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1330,123,0 chrIII 25467 . A G 1275 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=27.13;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1308,123,0 chrIII 25689 . G A 2145 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2178,205,0 chrIII 25808 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=28.56;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1861,174,0 chrIII 26192 . G A 1947 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=29.06;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1980,183,0 chrIII 26423 . A G 1215 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.61;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1248,120,0 chrIII 26609 . T A 1605 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=27.67;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1638,153,0 chrIII 26769 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.23;SB=-4.690e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1501,141,0 chrIII 26798 . T C 1728 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.3046;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=28.80;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1761,168,0 chrIII 26807 . T C 1688 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=27.67;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1721,162,0 chrIII 26923 . A C 1593 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.11;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1626,153,0 chrIII 27372 . T A 1530 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=6.990;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;MQRankSum=-0.850;QD=27.82;ReadPosRankSum=0.346;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1563,150,0 chrIII 27420 . G A 1019 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.11;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1052,99,0 chrIII 27651 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=22.1724;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=27.24;SB=-8.801e+01 GT:AD:DP:GQ:PL 1/1:0,44:45:99:1259,117,0 chrIII 27717 . T C 689 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.9799;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=1;QD=14.66;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:69:722,69,0 chrIII 27724 . G C 767 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.9587;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=1;QD=17.84;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:78:800,78,0 chrIII 27744 . A G 786 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.00;MQ0=1;QD=22.46;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:78:819,78,0 chrIII 28362 . G A 994 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=30.12;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:1027,93,0 chrIII 28477 . A G 1240 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;QD=30.24;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1273,120,0 chrIII 28543 . G A 1997 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.43;MQ0=0;QD=25.94;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2030,192,0 chrIII 28567 . C T 2193 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=27.76;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2226,208,0 chrIII 28570 . T C 2143 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=53.72;MQ0=0;QD=27.47;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2176,205,0 chrIII 28597 . G A 2578 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.63;MQ0=0;QD=28.33;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2611,244,0 chrIII 28801 . G T 987 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=28.20;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1020,96,0 chrIII 28955 . C T 1578 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=30.35;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1611,150,0 chrIII 29261 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=29.47;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1477,141,0 chrIII 29326 . T A 1664 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=57;Dels=0.00;FS=3.245;HaplotypeScore=5.8034;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;MQRankSum=1.185;QD=29.19;ReadPosRankSum=0.760;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1697,159,0 chrIII 29373 . T G 1151 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=26.77;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1184,111,0 chrIII 29388 . G A 1190 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.21;MQ0=0;QD=26.44;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1223,114,0 chrIII 29511 . A C 1050 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=48.43;MQ0=0;QD=26.25;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:1083,102,0 chrIII 29560 . C T 1450 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=26.85;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1483,138,0 chrIII 29668 . G A 1746 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.29;MQ0=0;QD=28.16;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1779,165,0 chrIII 29675 . T A 1709 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.36;MQ0=0;QD=26.29;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1742,165,0 chrIII 29700 . A G 1625 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.67;MQ0=0;QD=25.39;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1658,156,0 chrIII 29722 . A G 1351 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=22.90;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1384,132,0 chrIII 29724 . A T 1503 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=25.47;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1536,144,0 chrIII 29747 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=28.01;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1966,186,0 chrIII 29774 . C T 2163 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.43;MQ0=0;QD=29.23;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2196,208,0 chrIII 29830 . T A 2089 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.02;MQ0=0;QD=29.42;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2122,201,0 chrIII 29840 . C T 1797 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=26.82;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1830,174,0 chrIII 29922 . A G 1251 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=27.80;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1284,123,0 chrIII 30013 . C T 1690 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.32;MQ0=0;QD=29.14;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1723,159,0 chrIII 30103 . T C 1319 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=24.89;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1352,126,0 chrIII 30227 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=29.33;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1793,171,0 chrIII 30246 . C A 1693 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=29.70;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1726,162,0 chrIII 30479 . T C 1484 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=26.98;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1517,144,0 chrIII 30860 . T G 1467 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6483;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.21;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1500,144,0 chrIII 31156 . A T 2314 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.85;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2347,220,0 chrIII 31227 . T A 1488 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.08;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1521,147,0 chrIII 31414 . A G 1771 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=26.83;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1804,171,0 chrIII 32243 . G C 2075 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.67;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2108,201,0 chrIII 32547 . G A 1653 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.00;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1686,159,0 chrIII 32927 . T C 1982 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=29.15;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2015,192,0 chrIII 33140 . T C 1317 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=27.44;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1350,129,0 chrIII 33329 . T C 1183 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.51;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1216,117,0 chrIII 33566 . T C 1345 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.93;MQ0=0;QD=28.02;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1378,132,0 chrIII 33569 . A C 1287 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=25.74;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1320,126,0 chrIII 33587 . T C 1279 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=4.9451;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=26.10;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1312,126,0 chrIII 33692 . A G 992 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.06;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1025,96,0 chrIII 33845 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.8235;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=28.56;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1718,168,0 chrIII 34008 . T C 2046 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=30.09;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2079,195,0 chrIII 34024 . G T 1737 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=29.95;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1770,168,0 chrIII 34592 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.88;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1622,153,0 chrIII 34635 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.40;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1595,150,0 chrIII 34667 . G A 1680 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=25.45;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1713,159,0 chrIII 34749 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=29.13;SB=-9.360e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1868,171,0 chrIII 34755 . G A 1783 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=28.76;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1816,171,0 chrIII 34905 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.60;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1744,162,0 chrIII 35251 . C T 1404 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.20;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1437,132,0 chrIII 35700 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=30.44;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1555,144,0 chrIII 36186 . C G 1090 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.95;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1123,108,0 chrIII 36388 . A G 1851 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=26.44;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1884,177,0 chrIII 36506 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.98;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1220,117,0 chrIII 36579 . G C 1577 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.67;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1610,153,0 chrIII 36653 . G A 1355 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=28.23;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1388,129,0 chrIII 36701 . A G 1637 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=29.23;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1670,156,0 chrIII 36813 . A G 1487 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.16;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1520,144,0 chrIII 36914 . T C 1914 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=28.57;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1947,186,0 chrIII 37159 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7480;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=28.54;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1717,162,0 chrIII 37395 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=30.04;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1535,141,0 chrIII 37484 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.81;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1464,138,0 chrIII 37525 . A G 1738 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=28.97;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1771,165,0 chrIII 37664 . A G 970 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=27.71;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1003,96,0 chrIII 37731 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.78;MQ0=0;QD=29.30;SB=-2.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1967,189,0 chrIII 38022 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.5532;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=30.20;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1392,129,0 chrIII 38178 . A G 1445 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.90;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1478,141,0 chrIII 38318 . G A 1532 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.91;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1565,144,0 chrIII 38503 . T C 1959 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=28.81;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1992,189,0 chrIII 38664 . A G 1953 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=29.59;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1986,186,0 chrIII 38814 . T G 1294 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=28.76;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1327,126,0 chrIII 39123 . A T 1997 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=30.26;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2030,192,0 chrIII 39265 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=27.84;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1564,147,0 chrIII 39326 . T G 1826 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=64;Dels=0.00;FS=4.840;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=0.217;QD=28.53;ReadPosRankSum=0.217;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1859,177,0 chrIII 39512 . A G 1601 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=28.09;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1634,156,0 chrIII 39524 . G C 1506 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=27.89;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1539,147,0 chrIII 39525 . A C 1510 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.60;MQ0=0;QD=27.96;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1543,147,0 chrIII 39539 . T A 1572 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.71;MQ0=0;QD=24.95;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1605,153,0 chrIII 39540 . C A 1580 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=24.31;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1613,153,0 chrIII 39552 . T C 1298 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.90;MQ0=0;QD=24.49;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1331,126,0 chrIII 39607 . A G 1163 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=54.32;MQ0=0;QD=22.80;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1196,111,0 chrIII 39967 . A G 1565 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=27.46;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1598,150,0 chrIII 40008 . G A 1853 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=26.10;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1886,177,0 chrIII 40089 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=30.87;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2101,195,0 chrIII 40109 . C A 1820 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=29.35;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1853,177,0 chrIII 40144 . C T 1309 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=27.27;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1342,126,0 chrIII 40197 . T A 1397 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;MQRankSum=-1.466;QD=26.87;ReadPosRankSum=0.533;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1430,112,0 chrIII 40374 . G C 1594 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=26.13;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1627,150,0 chrIII 40410 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=27.03;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1682,159,0 chrIII 40515 . G C 1973 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=30.83;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2006,189,0 chrIII 40583 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=29.22;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1465,138,0 chrIII 40911 . G T 778 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.755;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=57.18;MQ0=0;MQRankSum=0.755;QD=19.95;ReadPosRankSum=0.578;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:50:811,50,0 chrIII 40987 . G A 1916 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.43;MQ0=0;QD=29.94;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:1949,183,0 chrIII 41007 . T G 2132 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=28.81;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2165,204,0 chrIII 41015 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.70;MQ0=0;QD=28.79;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1847,174,0 chrIII 41756 . T C 1073 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=26.82;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1106,102,0 chrIII 41847 . C T 2248 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=30.38;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2281,214,0 chrIII 41852 . T C 2098 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=27.25;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2131,201,0 chrIII 41868 . T A 1964 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.62;MQ0=0;QD=28.46;SB=-2.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1997,189,0 chrIII 42659 . G A 1791 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.43;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1824,168,0 chrIII 42698 . C G 2129 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.29;SB=-1.205e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2162,207,0 chrIII 42728 . A C 1711 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.677;DP=63;Dels=0.00;FS=3.680;HaplotypeScore=1.9736;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;MQRankSum=1.677;QD=27.16;ReadPosRankSum=1.237;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1744,165,0 chrIII 42761 . A C 1580 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=23.58;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1613,153,0 chrIII 43107 . T G 1739 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.98;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1772,168,0 chrIII 43346 . G A 1442 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=29.43;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1475,135,0 chrIII 43422 . T G 1514 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.57;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1547,141,0 chrIII 43513 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.32;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1880,174,0 chrIII 43528 . C T 2312 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.61;MQ0=0;QD=29.27;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2345,226,0 chrIII 43618 . C T 229.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.490;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=62.6235;MLEAC=2;MLEAF=1.00;MQ=62.14;MQ0=0;MQRankSum=-0.443;QD=2.66;ReadPosRankSum=0.967;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:1:258,1,0 chrIII 43874 . G A 1582 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=28.25;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1615,153,0 chrIII 43877 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=29.93;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1739,165,0 chrIII 44288 . A G 1737 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.95;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1770,168,0 chrIII 44562 . G A 34.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.453;DP=86;Dels=0.01;FS=131.181;HaplotypeScore=10.3232;MLEAC=1;MLEAF=0.500;MQ=58.22;MQ0=0;MQRankSum=0.605;QD=0.40;ReadPosRankSum=-4.848;SB=-2.602e+00 GT:AD:DP:GQ:PL 0/1:65,19:85:64:64,0,157 chrIII 45037 . C A 1489 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=30.39;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1522,141,0 chrIII 45058 . A T 1674 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=28.37;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1707,162,0 chrIII 45185 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=27.93;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1569,147,0 chrIII 45691 . T C 1777 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.66;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1810,171,0 chrIII 45755 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=29.98;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1982,183,0 chrIII 45790 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=26.83;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1455,135,0 chrIII 45811 . C T 1236 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=28.74;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1269,117,0 chrIII 46119 . G A 2051 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=29.30;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2084,192,0 chrIII 46258 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=28.74;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1987,186,0 chrIII 46458 . T C 1668 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.108;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;MQRankSum=0.650;QD=25.66;ReadPosRankSum=-1.191;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1701,133,0 chrIII 46562 . T A 1959 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=29.24;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1992,186,0 chrIII 47332 . G T 1841 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=28.77;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1874,177,0 chrIII 48029 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=28.32;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1449,135,0 chrIII 48544 . A G 2122 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=29.89;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2155,207,0 chrIII 48704 . A G,T 469.01 PASS AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.658;DP=46;Dels=0.00;FS=8.522;HaplotypeScore=3.9878;MLEAC=1,1;MLEAF=0.500,0.500;MQ=38.74;MQ0=0;MQRankSum=-0.245;QD=10.20;ReadPosRankSum=-3.865;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/2:6,16,24:46:70:529,115,70,414,0,402 chrIII 48707 . G A 340.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.850;DP=47;Dels=0.00;FS=12.100;HaplotypeScore=15.9585;MLEAC=1;MLEAF=0.500;MQ=40.05;MQ0=0;MQRankSum=-0.174;QD=7.23;ReadPosRankSum=-4.013;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:33,14:47:99:370,0,157 chrIII 49436 . T C 1091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.654;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.8237;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;MQRankSum=-1.339;QD=24.80;ReadPosRankSum=1.024;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:99:1124,108,0 chrIII 50090 . C T 747 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=28.73;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:780,72,0 chrIII 50099 . G A 652 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=25.08;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:63:685,63,0 chrIII 50609 . C G 439 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.39;SB=-6.201e+01 GT:AD:DP:GQ:PL 1/1:0,18:18:45:472,45,0 chrIII 50612 . C G 445 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=22.25;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:45:478,45,0 chrIII 50819 . C T 1093 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.471;DP=43;Dels=0.00;FS=2.854;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.836;QD=25.42;ReadPosRankSum=0.433;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:56:1126,56,0 chrIII 51701 . C T 1942 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.5256;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=29.42;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1975,180,0 chrIII 51788 . G A 1754 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=29.23;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1787,165,0 chrIII 51852 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.12;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1861,174,0 chrIII 52208 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.08;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1333,126,0 chrIII 52238 . A G 1590 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=28.91;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1623,153,0 chrIII 53891 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.82;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1505,144,0 chrIII 57071 . C A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.685;DP=65;Dels=0.00;FS=1.199;HaplotypeScore=11.7606;MLEAC=1;MLEAF=0.500;MQ=58.98;MQ0=0;MQRankSum=-0.366;QD=0.42;ReadPosRankSum=-2.894;SB=-1.090e+02 GT:AD:DP:GQ:PL 0/1:36,29:65:57:57,0,422 chrIII 57085 . C A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268;DP=40;Dels=0.00;FS=51.299;HaplotypeScore=3.7450;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=1.095;QD=0.31;ReadPosRankSum=-2.867;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,14:40:42:42,0,234 chrIII 57239 . C A 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503;DP=29;Dels=0.00;FS=33.364;HaplotypeScore=0.9947;MLEAC=1;MLEAF=0.500;MQ=55.90;MQ0=0;MQRankSum=1.637;QD=2.07;ReadPosRankSum=-1.169;SB=0.325 GT:AD:DP:GQ:PL 0/1:18,11:29:90:90,0,172 chrIII 74002 . T C 1931 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=26.82;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1964,186,0 chrIII 74074 . T C 2164 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=29.64;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2197,210,0 chrIII 74202 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4105;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=27.36;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1620,153,0 chrIII 74327 . C A 2139 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=27.78;SB=-8.620e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2172,205,0 chrIII 74335 . G C 2334 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=25.10;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,93:93:99:2367,226,0 chrIII 74346 . A G 2320 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=26.36;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,87:88:99:2353,225,0 chrIII 74505 . C T 1139 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.47;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1172,111,0 chrIII 74577 . T C 1509 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=27.94;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1542,147,0 chrIII 77900 . A G 1508 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=23.56;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1541,144,0 chrIII 77941 . A C 2229 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=27.86;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2262,213,0 chrIII 79096 . G T 2407 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=24.81;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,97:97:99:2440,235,0 chrIII 79170 . G A 1545 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.06;MQ0=1;QD=26.19;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1578,150,0 chrIII 79613 . G A 1962 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=29.28;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1995,186,0 chrIII 80091 . G A 1548 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.77;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1581,150,0 chrIII 80444 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.45;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1854,174,0 chrIII 81845 . A G 1468 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=55;Dels=0.00;FS=3.900;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;MQRankSum=1.155;QD=26.69;ReadPosRankSum=0.449;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1501,114,0 chrIII 82365 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=29.25;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1437,138,0 chrIII 82590 . C T 1127 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=30.46;SB=-3.410e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1160,108,0 chrIII 82701 . G A 349 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.22;MQ0=0;QD=24.93;SB=-6.200e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:36:382,36,0 chrIII 83035 . C T 120.26 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=62.89;MQ0=0;MQRankSum=-0.158;QD=10.93;ReadPosRankSum=-1.739;SB=-1.241e+02 GT:AD:DP:GQ:PL 1/1:1,10:11:15:153,15,0 chrIII 83036 . A T 124.26 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=3.9890;MLEAC=2;MLEAF=1.00;MQ=62.00;MQ0=0;QD=7.77;SB=-1.303e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:15:157,15,0 chrIII 83118 . T G 1622 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=27.49;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1655,150,0 chrIII 83421 . C T 1276 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=29.00;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1309,120,0 chrIII 83576 . A G 1313 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.79;MQ0=0;QD=29.18;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1346,129,0 chrIII 83594 . A G 1070 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=28.92;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1103,105,0 chrIII 83597 . G T 1083 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.76;MQ0=0;QD=29.27;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1116,105,0 chrIII 83607 . T A 1109 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.11;MQ0=0;QD=28.44;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1142,108,0 chrIII 83631 . C T 1380 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.76;MQ0=0;QD=27.60;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1413,132,0 chrIII 83635 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.08;MQ0=0;QD=27.22;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1285,123,0 chrIII 84048 . C T 1791 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=26.34;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1824,177,0 chrIII 84070 . G A 952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.767;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=13.9623;MLEAC=2;MLEAF=1.00;MQ=31.23;MQ0=0;MQRankSum=0.110;QD=21.16;ReadPosRankSum=-4.181;SB=-2.900e+01 GT:AD:DP:GQ:PL 1/1:7,38:45:93:985,93,0 chrIII 84097 . C T 190.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=14.62;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:223,21,0 chrIII 84099 . A G 194.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=14.93;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:227,21,0 chrIII 84103 . A G 188.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=14.47;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:221,21,0 chrIII 84109 . T C 184.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=14.16;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:217,21,0 chrIII 84111 . C T 148.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=11.39;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:181,21,0 chrIII 84112 . G C 147.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=11.31;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:180,21,0 chrIII 84114 . T C 188.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=14.47;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:221,21,0 chrIII 84116 . C G 156.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=12.00;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:189,21,0 chrIII 84117 . T C 156.06 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;QD=12.00;SB=-5.768e-02 GT:AD:DP:GQ:PL 1/1:4,9:13:21:189,21,0 chrIII 84133 . A G 246.01 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.11;MQ0=4;QD=15.38;SB=-2.163e-02 GT:AD:DP:GQ:PL 1/1:4,12:16:27:279,27,0 chrIII 84146 . A G 32.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.179;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.13;MQ0=4;MQRankSum=0.762;QD=2.52;ReadPosRankSum=-1.666;SB=1.24 GT:AD:DP:GQ:PL 1/1:11,2:13:6:64,6,0 chrIII 84161 . A G 31.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=4;QD=3.53;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:63,6,0 chrIII 84165 . A G 30.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=4;QD=3.42;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:62,6,0 chrIII 84166 . T C 30.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=4;QD=3.42;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:62,6,0 chrIII 84181 . G A 31.77 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.62;MQ0=4;QD=3.53;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:4,5:9:6:63,6,0 chrIII 84190 . G A 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;QD=7.15;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:67,6,0 chrIII 84194 . C T 33.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.46;MQ0=2;QD=6.75;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:2,3:5:6:65,6,0 chrIII 84195 . A G 31.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.59;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:63,6,0 chrIII 84204 . G A 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.29;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:47,6,0 chrIII 84205 . A G 15.88 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=5.29;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:47,6,0 chrIII 84208 . A G 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrIII 84209 . T A 19.81 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=6.60;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:51,6,0 chrIII 84216 . G A 32.77 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=10.92;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:0,3:3:6:64,6,0 chrIII 84407 . G A 63.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.495;DP=63;Dels=0.00;FS=31.527;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.11;MQ0=41;MQRankSum=3.923;QD=1.02;ReadPosRankSum=-3.132;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:51,12:63:9:96,9,0 chrIII 84416 . G A 61.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.802;DP=59;Dels=0.00;FS=31.527;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.54;MQ0=37;MQRankSum=3.923;QD=1.05;ReadPosRankSum=-1.879;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:47,12:59:9:94,9,0 chrIII 84420 . C T 63.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=60;Dels=0.00;FS=31.527;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.43;MQ0=38;MQRankSum=3.923;QD=1.07;ReadPosRankSum=-1.747;SB=-9.796e-01 GT:AD:DP:GQ:PL 1/1:48,12:60:9:96,9,0 chrIII 84430 . G A 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.758;DP=52;Dels=0.00;FS=29.863;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.86;MQ0=30;MQRankSum=3.940;QD=0.79;ReadPosRankSum=-0.591;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:41,11:52:9:73,9,0 chrIII 84431 . A G 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.131;DP=48;Dels=0.00;FS=29.863;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=14.43;MQ0=26;MQRankSum=3.940;QD=0.85;ReadPosRankSum=-0.591;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:37,11:48:9:73,9,0 chrIII 84434 . A G 47.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.248;DP=48;Dels=0.00;FS=29.863;HaplotypeScore=2.7995;MLEAC=2;MLEAF=1.00;MQ=14.43;MQ0=26;MQRankSum=3.940;QD=1.00;ReadPosRankSum=-0.591;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:37,11:48:9:80,9,0 chrIII 84435 . T A 49.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.233;DP=48;Dels=0.00;FS=29.863;HaplotypeScore=3.7327;MLEAC=2;MLEAF=1.00;MQ=14.43;MQ0=26;MQRankSum=3.940;QD=1.04;ReadPosRankSum=-0.657;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:37,11:48:9:82,9,0 chrIII 84442 . G A 63.97 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.500;DP=44;Dels=0.00;FS=29.863;HaplotypeScore=3.7327;MLEAC=2;MLEAF=1.00;MQ=15.07;MQ0=22;MQRankSum=3.838;QD=1.45;ReadPosRankSum=-1.725;SB=-9.775e-01 GT:AD:DP:GQ:PL 1/1:32,11:44:9:96,9,0 chrIII 84735 . C T 66.97 PASS AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.89;MQ0=0;QD=22.32;SB=-3.121e+01 GT:AD:DP:GQ:PL 1/1:0,3:3:9:99,9,0 chrIII 90748 . A C 363 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.770;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.79;MQ0=1;MQRankSum=-0.400;QD=15.78;ReadPosRankSum=2.227;SB=4.12 GT:AD:DP:GQ:PL 1/1:3,20:23:45:396,45,0 chrIII 90756 . C T 387 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.14;MQ0=0;QD=22.76;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:39:420,39,0 chrIII 90770 . A T 378 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=23.62;SB=-7.475e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:39:411,39,0 chrIII 93194 . G A 1883 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=5.3958;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=29.89;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1916,180,0 chrIII 93275 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=26.17;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1760,168,0 chrIII 93278 . T A 1700 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=26.98;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1733,165,0 chrIII 93455 . A G 1607 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.70;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1640,156,0 chrIII 93512 . A G 1992 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.9874;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=28.87;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2025,192,0 chrIII 93620 . T C 1831 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=27.33;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1864,174,0 chrIII 93824 . A G 1352 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.73;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1385,132,0 chrIII 94248 . C T 1000 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.30;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1033,96,0 chrIII 94470 . T G 1307 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;QD=24.66;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1340,126,0 chrIII 94554 . G A 1520 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=29.80;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1553,147,0 chrIII 94573 . G A 1720 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=30.71;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1753,165,0 chrIII 94591 . C G 1588 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=29.96;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1621,156,0 chrIII 95029 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.11;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1607,156,0 chrIII 95071 . A G 1806 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=29.13;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1839,174,0 chrIII 95149 . A G 1928 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=28.78;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1961,183,0 chrIII 95527 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=24.49;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1576,150,0 chrIII 95697 . C T 1856 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=6.9091;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=28.55;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1889,171,0 chrIII 95776 . T C 2103 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=28.81;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2136,198,0 chrIII 95815 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.55;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1934,180,0 chrIII 95935 . A C 1525 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=29.90;SB=-4.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1558,147,0 chrIII 95946 . C G 1642 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=26.92;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1675,159,0 chrIII 95967 . G T 1570 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=27.07;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1603,150,0 chrIII 96019 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=22.50;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1113,102,0 chrIII 96055 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.93;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1219,114,0 chrIII 96799 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.3913;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=27.72;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1613,153,0 chrIII 96890 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.22;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1494,144,0 chrIII 97369 . A G 1611 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.26;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1644,159,0 chrIII 97696 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=29.82;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1375,132,0 chrIII 98578 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.51;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1774,165,0 chrIII 98617 . T C 2321 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=27.31;SB=-1.273e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2354,223,0 chrIII 98750 . G C 1495 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=27.69;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1528,144,0 chrIII 98770 . G A 1101 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.85;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1134,105,0 chrIII 99014 . A G 1519 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=28.66;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1552,147,0 chrIII 99163 . T C 1666 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.85;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1699,162,0 chrIII 99195 . C A 1986 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2019,189,0 chrIII 99209 . A G 2290 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.62;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2323,225,0 chrIII 99392 . C T 1482 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.9905;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=30.24;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1515,141,0 chrIII 99481 . T C 1475 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.72;MQ0=0;QD=28.92;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1508,147,0 chrIII 99547 . C T 1751 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.8268;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.19;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1784,168,0 chrIII 99655 . C T 1330 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.898;DP=54;Dels=0.00;FS=4.536;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.412;QD=24.63;ReadPosRankSum=-1.732;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1363,104,0 chrIII 100295 . A G 1548 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.64;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1581,150,0 chrIII 100329 . C A 1157 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.55;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1190,114,0 chrIII 106818 . C T 1001 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=30.33;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1034,96,0 chrIII 143131 . T C 1685 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=28.56;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1718,165,0 chrIII 148615 . C T 645 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=29.32;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:63:678,63,0 chrIII 151628 . A T 183.06 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.86;MQ0=0;QD=20.34;SB=-4.053e-02 GT:AD:DP:GQ:PL 1/1:0,9:9:21:216,21,0 chrIII 151645 . G A 97.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=1;QD=13.93;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:12:130,12,0 chrIII 151646 . T C 94.51 PASS AC=2;AF=1.00;AN=2;DP=7;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=23.81;MQ0=1;QD=13.50;SB=-2.563e-01 GT:AD:DP:GQ:PL 1/1:1,6:7:12:127,12,0 chrIII 151787 . A C 74.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.04;MQ0=0;MQRankSum=-4.287;QD=1.51;ReadPosRankSum=-1.312;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,8:49:99:104,0,1144 chrIII 162361 . T C 1799 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.8288;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.56;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1832,174,0 chrIII 162396 . G C 1459 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.61;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1492,141,0 chrIII 162640 . T G 1579 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=29.24;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1612,156,0 chrIII 162694 . G A 1399 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=27.98;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1432,135,0 chrIII 163059 . T C 1384 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=28.83;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1417,135,0 chrIII 169906 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=30.74;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1355,129,0 chrIII 179744 . C T 2232 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.00;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2265,214,0 chrIII 198944 . T A 1067.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.865;DP=112;Dels=0.00;FS=7.956;HaplotypeScore=1.5774;MLEAC=1;MLEAF=0.500;MQ=39.14;MQ0=3;MQRankSum=-3.576;QD=9.53;ReadPosRankSum=0.337;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:59,53:112:99:1097,0,1409 chrIII 199081 . G A 260.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DP=42;Dels=0.00;FS=1.893;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=21.59;MQ0=18;MQRankSum=1.990;QD=6.19;ReadPosRankSum=0.337;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:14,28:42:99:290,0,119 chrIII 199307 . A G 963.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.381;DP=79;Dels=0.00;FS=0.915;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=30.50;MQ0=5;MQRankSum=2.048;QD=12.19;ReadPosRankSum=-0.365;SB=-3.910e+02 GT:AD:DP:GQ:PL 0/1:31,48:79:99:993,0,540 chrIII 201189 . A C 1999 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.45;MQ0=0;QD=29.40;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2032,189,0 chrIII 201978 . A G 1134 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=29.84;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1167,111,0 chrIII 203936 . T A 1033 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=29.51;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1066,99,0 chrIII 203970 . A G 1147 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=28.67;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1180,111,0 chrIII 203991 . A C 975 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;MQRankSum=-0.421;QD=26.35;ReadPosRankSum=-0.890;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:96:1008,96,0 chrIII 263175 . G C 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.734;DP=66;Dels=0.00;FS=34.129;HaplotypeScore=7.6415;MLEAC=1;MLEAF=0.500;MQ=55.95;MQ0=0;MQRankSum=-2.632;QD=0.36;ReadPosRankSum=-0.929;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,11:66:54:54,0,1321 chrIII 277564 . G T 133.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.727;DP=50;Dels=0.00;FS=73.837;HaplotypeScore=1.7675;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.437;QD=2.66;ReadPosRankSum=-4.678;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,14:50:99:163,0,828 chrIII 293855 . G A 956.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.242;DP=89;Dels=0.00;FS=14.641;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.06;MQ0=0;MQRankSum=-1.244;QD=10.74;ReadPosRankSum=0.618;SB=-3.020e+02 GT:AD:DP:GQ:PL 0/1:45,43:89:99:986,0,1147 chrIII 293907 . G T 1030.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.253;DP=83;Dels=0.00;FS=9.637;HaplotypeScore=2.7581;MLEAC=1;MLEAF=0.500;MQ=49.04;MQ0=0;MQRankSum=-1.702;QD=12.41;ReadPosRankSum=0.214;SB=-2.940e+02 GT:AD:DP:GQ:PL 0/1:39,44:83:99:1060,0,971 chrIII 293908 . A T 1022.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.207;DP=82;Dels=0.00;FS=11.811;HaplotypeScore=2.7581;MLEAC=1;MLEAF=0.500;MQ=49.16;MQ0=0;MQRankSum=-1.161;QD=12.46;ReadPosRankSum=0.576;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:39,43:82:99:1052,0,1016 chrIII 293909 . A C 979.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348;DP=80;Dels=0.00;FS=9.856;HaplotypeScore=2.7581;MLEAC=1;MLEAF=0.500;MQ=48.86;MQ0=0;MQRankSum=-0.789;QD=12.24;ReadPosRankSum=1.117;SB=-2.570e+02 GT:AD:DP:GQ:PL 0/1:39,41:80:99:1009,0,1016 chrIII 293920 . A G 1098.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388;DP=83;Dels=0.00;FS=14.824;HaplotypeScore=1.7608;MLEAC=1;MLEAF=0.500;MQ=49.06;MQ0=0;MQRankSum=-2.460;QD=13.23;ReadPosRankSum=0.261;SB=-2.320e+02 GT:AD:DP:GQ:PL 0/1:37,46:83:99:1128,0,930 chrIII 294389 . A T 1014.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.832;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=53.19;MQ0=0;MQRankSum=-0.655;QD=14.08;ReadPosRankSum=-0.493;SB=-2.880e+02 GT:AD:DP:GQ:PL 0/1:31,40:72:99:1044,0,734 chrIII 294593 . T C 143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.545;DP=48;Dels=0.00;FS=24.668;HaplotypeScore=1.9920;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=0;MQRankSum=-5.004;QD=2.98;ReadPosRankSum=-0.466;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,11:48:99:173,0,1028 chrIII 294609 . T C 134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DP=47;Dels=0.00;FS=24.228;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.84;MQ0=0;MQRankSum=-4.988;QD=2.85;ReadPosRankSum=-3.832;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,11:47:99:164,0,980 chrIV 13937 . G A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.550;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.42;MQ0=41;MQRankSum=0.000;QD=0.73;ReadPosRankSum=-0.550;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,23:48:65:65,0,65 chrIV 43901 . G A 78.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.950;DP=24;Dels=0.00;FS=58.666;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=56.04;MQ0=0;MQRankSum=1.133;QD=3.25;ReadPosRankSum=-3.889;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:8,16:24:99:108,0,128 chrIV 169939 . G A 245.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497;DP=38;Dels=0.00;FS=72.590;HaplotypeScore=38.0495;MLEAC=1;MLEAF=0.500;MQ=56.25;MQ0=0;MQRankSum=-1.928;QD=6.45;ReadPosRankSum=-2.984;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:10,28:38:71:275,0,71 chrIV 169954 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.333;DP=15;Dels=0.00;FS=18.243;HaplotypeScore=2.5309;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-1.202;QD=0.69;ReadPosRankSum=-2.616;SB=3.421e-04 GT:AD:DP:GQ:PL 0/1:10,4:15:40:40,0,205 chrIV 203927 . C A 2059 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.956;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=0.299;QD=35.50;ReadPosRankSum=-1.553;SB=-1.022e+03 GT:AD:DP:GQ:PL 1/1:1,57:58:99:2092,127,0 chrIV 210356 . G A 1089 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.13;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:1122,84,0 chrIV 369284 . G A 182.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.458;DP=58;Dels=0.03;FS=150.358;HaplotypeScore=4.6547;MLEAC=1;MLEAF=0.500;MQ=54.37;MQ0=0;MQRankSum=2.484;QD=3.14;ReadPosRankSum=-4.846;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:31,25:56:99:212,0,161 chrIV 369290 . G A 95.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.165;DP=59;Dels=0.02;FS=131.961;HaplotypeScore=12.3395;MLEAC=1;MLEAF=0.500;MQ=54.47;MQ0=0;MQRankSum=3.907;QD=1.61;ReadPosRankSum=-4.365;SB=-3.013e+00 GT:AD:DP:GQ:PL 0/1:34,24:58:99:125,0,307 chrIV 369294 . G A 30.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.252;DP=61;Dels=0.02;FS=126.543;HaplotypeScore=12.7161;MLEAC=1;MLEAF=0.500;MQ=54.66;MQ0=0;MQRankSum=3.728;QD=0.49;ReadPosRankSum=-4.009;SB=0.101 GT:AD:DP:GQ:PL 0/1:39,21:60:60:60,0,401 chrIV 607060 . G A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.428;DP=55;Dels=0.00;FS=49.403;HaplotypeScore=3.1456;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-0.560;QD=0.38;ReadPosRankSum=-2.778;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,12:55:51:51,0,265 chrIV 607069 . G A 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.997;DP=55;Dels=0.00;FS=58.821;HaplotypeScore=5.0114;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=0.484;QD=0.40;ReadPosRankSum=-3.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,13:55:52:52,0,312 chrIV 629248 . G A 2174 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=36.85;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2207,166,0 chrIV 655316 . A T 212.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.123;DP=34;Dels=0.00;FS=56.412;HaplotypeScore=12.5361;MLEAC=1;MLEAF=0.500;MQ=52.81;MQ0=0;MQRankSum=-2.640;QD=6.24;ReadPosRankSum=-0.880;SB=-6.515e-03 GT:AD:DP:GQ:PL 0/1:18,16:34:99:242,0,507 chrIV 655321 . A T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441;DP=31;Dels=0.00;FS=22.368;HaplotypeScore=17.9564;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-2.494;QD=1.06;ReadPosRankSum=0.637;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,10:31:63:63,0,546 chrIV 655343 . C T 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150;DP=33;Dels=0.03;FS=20.002;HaplotypeScore=8.3318;MLEAC=1;MLEAF=0.500;MQ=54.14;MQ0=0;MQRankSum=-2.650;QD=2.27;ReadPosRankSum=-3.822;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,10:32:99:105,0,783 chrIV 699247 . T G 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.755;DP=36;Dels=0.00;FS=58.954;HaplotypeScore=3.8345;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=0;MQRankSum=0.405;QD=0.89;ReadPosRankSum=-2.540;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,13:36:62:62,0,722 chrIV 757631 . G C 548 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.65;MQ0=3;QD=18.27;SB=-2.970e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:54:581,54,0 chrIV 758310 . T C 145.13 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.53;MQ0=3;QD=7.26;SB=-5.488e+01 GT:AD:DP:GQ:PL 1/1:0,20:20:18:178,18,0 chrIV 879129 . T C 26.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DP=68;Dels=0.00;FS=28.203;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.11;MQ0=12;MQRankSum=-3.588;QD=0.38;ReadPosRankSum=1.781;SB=-2.026e+01 GT:AD:DP:GQ:PL 0/1:50,18:68:24:56,0,24 chrIV 921834 . T A 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.740;DP=49;Dels=0.04;FS=94.761;HaplotypeScore=2.8662;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=0.588;QD=0.59;ReadPosRankSum=-4.765;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:34,13:47:59:59,0,514 chrIV 928579 . C G 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.444;DP=30;Dels=0.00;FS=61.556;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=0.498;QD=2.73;ReadPosRankSum=-3.530;SB=0.325 GT:AD:DP:GQ:PL 0/1:21,9:30:99:112,0,707 chrIV 948379 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=37.19;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1595,123,0 chrIV 956003 . G A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025;DP=43;Dels=0.00;FS=31.494;HaplotypeScore=2.8898;MLEAC=1;MLEAF=0.500;MQ=58.37;MQ0=0;MQRankSum=1.279;QD=0.33;ReadPosRankSum=-3.431;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,13:43:44:44,0,389 chrIV 987244 . G A 314 filter AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.84;MQ0=19;QD=9.24;SB=-9.998e+01 GT:AD:DP:GQ:PL 1/1:7,27:34:33:347,33,0 chrIV 1021281 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.07;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2072,156,0 chrIV 1047299 . G C 2218 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=35.21;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2251,169,0 chrIV 1112932 . G A 2125 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=37.28;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2158,162,0 chrIV 1120335 . A G 1997 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.43;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2030,156,0 chrIV 1145593 . G A 1771 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=38.50;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1804,132,0 chrIV 1175694 . G A 1825 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.597;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=56.36;MQ0=0;MQRankSum=-1.053;QD=35.10;ReadPosRankSum=1.121;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:1,50:52:99:1858,117,0 chrIV 1242708 . G A 1994 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=33.80;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2027,157,0 chrIV 1244393 . C A 64.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.193;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.7465;MLEAC=1;MLEAF=0.500;MQ=9.11;MQ0=78;MQRankSum=0.270;QD=0.65;ReadPosRankSum=0.270;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,49:98:94:94,0,172 chrIV 1253397 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=36.57;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1715,129,0 chrIV 1265985 . G T 1811 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=37.73;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1844,138,0 chrIV 1280001 . G A 2029 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=36.23;SB=-1.043e+03 GT:AD:DP:GQ:PL 1/1:0,56:56:99:2062,159,0 chrIV 1314309 . C T 1505 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=34.20;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1538,123,0 chrIV 1330483 . C T 1629 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=35.41;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1662,129,0 chrIV 1342500 . G A 1441 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.02;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:1474,111,0 chrIV 1369395 . G A 1365 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=32.50;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1398,105,0 chrIV 1402305 . C T 1519 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=34.52;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1552,117,0 chrIV 1433710 . A T 1499 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=31.89;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1532,117,0 chrIV 1524974 . A G 1536 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=33.39;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1569,126,0 chrIV 1525313 . T G 861 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.02;MQ0=0;QD=28.70;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:894,78,0 chrIV 1525335 . C G 902 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.09;MQ0=0;QD=28.19;SB=-7.101e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:84:935,84,0 chrIV 1525340 . C A 836 SnpCluster AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.83;MQ0=0;QD=27.87;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:0,30:30:78:869,78,0 chrIV 1525345 . C G 770 SnpCluster AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.65;MQ0=0;QD=27.50;SB=-3.401e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:72:803,72,0 chrIV 1525351 . C G 703 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=28.12;SB=-6.521e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:66:736,66,0 chrIV 1525357 . C G 636 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=28.91;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:60:669,60,0 chrIV 1525363 . C G 669 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=29.09;SB=-6.523e-03 GT:AD:DP:GQ:PL 1/1:0,23:23:63:702,63,0 chrIV 1525366 . C G 636 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=28.91;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:60:669,60,0 chrIV 1525368 . C G 634 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=28.82;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:60:667,60,0 chrIV 1525370 . C G 636 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=18.3637;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=28.91;SB=-6.526e-03 GT:AD:DP:GQ:PL 1/1:0,22:22:60:669,60,0 chrIX 25376 . C T 142.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981;DP=89;Dels=0.00;FS=2.492;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=56.54;MQ0=0;MQRankSum=0.558;QD=1.60;ReadPosRankSum=-4.975;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:75,14:89:99:172,0,2448 chrIX 25418 . T C 1252.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.276;DP=105;Dels=0.00;FS=11.032;HaplotypeScore=2.8106;MLEAC=1;MLEAF=0.500;MQ=57.91;MQ0=0;MQRankSum=2.458;QD=11.92;ReadPosRankSum=1.042;SB=-4.290e+02 GT:AD:DP:GQ:PL 0/1:61,44:105:99:1282,0,1800 chrIX 25586 . T C 536.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;DP=98;Dels=0.00;FS=0.821;HaplotypeScore=5.1451;MLEAC=1;MLEAF=0.500;MQ=51.06;MQ0=1;MQRankSum=-2.053;QD=5.47;ReadPosRankSum=-1.638;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/1:65,32:98:99:566,0,1835 chrIX 27325 . G T 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.598;DP=71;Dels=0.00;FS=56.241;HaplotypeScore=4.9280;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=0.606;QD=0.38;ReadPosRankSum=-3.475;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,12:71:57:57,0,1562 chrIX 76028 . G T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.746;DP=49;Dels=0.00;FS=61.858;HaplotypeScore=2.6182;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-1.769;QD=0.88;ReadPosRankSum=-3.331;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:41,8:49:73:73,0,391 chrIX 179816 . C T 2063 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=33.27;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2096,163,0 chrIX 205658 . A C 263.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=128;Dels=0.00;FS=20.179;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.08;MQ0=59;MQRankSum=-2.305;QD=2.05;ReadPosRankSum=0.252;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,50:128:99:293,0,831 chrIX 206018 . G A 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DP=171;Dels=0.00;FS=8.122;HaplotypeScore=1.6006;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=64;MQRankSum=-1.438;QD=0.74;ReadPosRankSum=-0.913;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:137,34:171:99:156,0,1895 chrIX 206122 . C T 673.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.152;DP=147;Dels=0.00;FS=0.829;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=28.29;MQ0=45;MQRankSum=-0.057;QD=4.58;ReadPosRankSum=0.443;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/1:105,42:147:99:703,0,1623 chrIX 206250 . A G 1245.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.947;DP=212;Dels=0.00;FS=0.611;HaplotypeScore=4.7729;MLEAC=1;MLEAF=0.500;MQ=38.51;MQ0=22;MQRankSum=-0.712;QD=5.87;ReadPosRankSum=0.983;SB=-4.300e+02 GT:AD:DP:GQ:PL 0/1:148,64:212:99:1275,0,3303 chrIX 206400 . G C 503.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.414;DP=186;Dels=0.00;FS=31.754;HaplotypeScore=4.4923;MLEAC=1;MLEAF=0.500;MQ=42.97;MQ0=20;MQRankSum=-7.505;QD=2.70;ReadPosRankSum=0.797;SB=-2.090e+02 GT:AD:DP:GQ:PL 0/1:117,69:186:99:533,0,3620 chrIX 206428 . G A 125.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;DP=129;Dels=0.00;FS=12.725;HaplotypeScore=11.7992;MLEAC=1;MLEAF=0.500;MQ=39.28;MQ0=23;MQRankSum=-6.179;QD=0.97;ReadPosRankSum=-0.400;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,35:129:99:155,0,2351 chrIX 206595 . C A 364.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131;DP=107;Dels=0.00;FS=0.000;HaplotypeScore=3.2253;MLEAC=1;MLEAF=0.500;MQ=26.78;MQ0=29;MQRankSum=-0.298;QD=3.40;ReadPosRankSum=1.272;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:77,30:107:99:394,0,1150 chrIX 207008 . T C 288.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033;DP=124;Dels=0.00;FS=0.000;HaplotypeScore=3.1800;MLEAC=1;MLEAF=0.500;MQ=28.87;MQ0=52;MQRankSum=-1.449;QD=2.32;ReadPosRankSum=-1.925;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:94,30:124:99:318,0,1164 chrIX 207010 . A C 282.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223;DP=125;Dels=0.00;FS=0.961;HaplotypeScore=4.0741;MLEAC=1;MLEAF=0.500;MQ=29.62;MQ0=50;MQRankSum=-0.638;QD=2.26;ReadPosRankSum=-2.258;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:94,31:125:99:312,0,1255 chrIX 207669 . C T 156.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290;DP=101;Dels=0.00;FS=2.355;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=24.07;MQ0=34;MQRankSum=0.267;QD=1.54;ReadPosRankSum=-0.209;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:67,34:101:99:186,0,1070 chrIX 207882 . C A 175.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.820;DP=163;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.47;MQ0=28;MQRankSum=-3.228;QD=1.07;ReadPosRankSum=-0.387;SB=-9.801e+01 GT:AD:DP:GQ:PL 0/1:136,27:163:99:205,0,3024 chrIX 208404 . C T 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.933;DP=159;Dels=0.00;FS=18.070;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=65;MQRankSum=-2.633;QD=0.20;ReadPosRankSum=-0.196;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:128,31:159:62:62,0,1739 chrIX 208411 . G T 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.712;DP=169;Dels=0.00;FS=21.093;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=21.75;MQ0=70;MQRankSum=-2.463;QD=0.31;ReadPosRankSum=0.558;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:136,33:169:83:83,0,1733 chrIX 209019 . G A 187.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.289;DP=106;Dels=0.00;FS=5.857;HaplotypeScore=1.2434;MLEAC=1;MLEAF=0.500;MQ=43.55;MQ0=12;MQRankSum=-0.650;QD=1.76;ReadPosRankSum=-2.313;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:79,27:106:99:217,0,2564 chrIX 209070 . T G 455.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217;DP=168;Dels=0.00;FS=2.723;HaplotypeScore=3.0659;MLEAC=1;MLEAF=0.500;MQ=47.17;MQ0=5;MQRankSum=-2.778;QD=2.71;ReadPosRankSum=0.315;SB=-2.180e+02 GT:AD:DP:GQ:PL 0/1:138,30:168:99:485,0,4433 chrIX 209091 . C T 2143.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DP=200;Dels=0.00;FS=1.820;HaplotypeScore=5.1353;MLEAC=1;MLEAF=0.500;MQ=46.06;MQ0=5;MQRankSum=-3.829;QD=10.72;ReadPosRankSum=0.099;SB=-9.470e+02 GT:AD:DP:GQ:PL 0/1:113,87:200:99:2173,0,3588 chrIX 209166 . C T 1549.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.643;DP=174;Dels=0.00;FS=7.165;HaplotypeScore=3.1278;MLEAC=1;MLEAF=0.500;MQ=45.94;MQ0=8;MQRankSum=-6.426;QD=8.90;ReadPosRankSum=-0.339;SB=-5.300e+02 GT:AD:DP:GQ:PL 0/1:105,69:174:99:1579,0,3402 chrIX 209259 . A G 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;DP=122;Dels=0.00;FS=1.042;HaplotypeScore=4.8896;MLEAC=1;MLEAF=0.500;MQ=48.22;MQ0=6;MQRankSum=-4.887;QD=1.08;ReadPosRankSum=-2.092;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:99,23:122:99:162,0,3133 chrIX 209841 . T C 113.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.197;DP=149;Dels=0.00;FS=11.803;HaplotypeScore=2.6912;MLEAC=1;MLEAF=0.500;MQ=22.15;MQ0=48;MQRankSum=-0.703;QD=0.76;ReadPosRankSum=-0.064;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,44:149:99:143,0,1775 chrIX 210095 . G A 520.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=41.16;MQ0=6;MQRankSum=-0.697;QD=5.20;ReadPosRankSum=-1.374;SB=-2.270e+02 GT:AD:DP:GQ:PL 0/1:68,32:100:99:550,0,2023 chrIX 210419 . A T 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DP=75;Dels=0.00;FS=40.746;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.24;MQ0=11;MQRankSum=-1.109;QD=1.11;ReadPosRankSum=-0.023;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,20:75:99:113,0,865 chrIX 210423 . T G 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.197;DP=74;Dels=0.00;FS=41.574;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.14;MQ0=11;MQRankSum=-0.640;QD=1.16;ReadPosRankSum=0.355;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:55,19:74:99:116,0,832 chrIX 234127 . T G 134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.348;DP=49;Dels=0.00;FS=64.964;HaplotypeScore=2.7323;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=-1.230;QD=2.73;ReadPosRankSum=0.458;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:32,17:49:99:164,0,880 chrIX 241054 . C A 85.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.224;DP=46;Dels=0.00;FS=87.787;HaplotypeScore=1.7351;MLEAC=1;MLEAF=0.500;MQ=64.32;MQ0=0;MQRankSum=0.069;QD=1.85;ReadPosRankSum=-4.464;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:29,17:46:99:115,0,213 chrIX 241059 . G A 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.307;DP=34;Dels=0.00;FS=46.663;HaplotypeScore=1.7351;MLEAC=1;MLEAF=0.500;MQ=62.80;MQ0=0;MQRankSum=-1.507;QD=0.97;ReadPosRankSum=-2.820;SB=0.037 GT:AD:DP:GQ:PL 0/1:29,5:34:63:63,0,349 chrIX 269954 . C T 1911 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=36.06;SB=-1.011e+03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1944,150,0 chrIX 285890 . T G 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.335;DP=43;Dels=0.00;FS=41.302;HaplotypeScore=1.9889;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=-0.492;QD=1.74;ReadPosRankSum=-1.832;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,17:43:99:105,0,802 chrIX 299331 . C T 1715 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=31.76;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1748,132,0 chrIX 299898 . T G 287.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.306;DP=49;Dels=0.00;FS=130.987;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.09;MQ0=0;MQRankSum=-0.396;QD=5.86;ReadPosRankSum=-5.467;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:26,23:49:99:317,0,828 chrIX 318694 . T A 1945 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.70;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1978,150,0 chrIX 324125 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.87;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1934,150,0 chrIX 331398 . C T 2475 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7333;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=35.36;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2508,196,0 chrIX 383892 . G C 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.633;DP=33;Dels=0.00;FS=66.306;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-0.418;QD=0.55;ReadPosRankSum=-3.633;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:26,7:33:48:48,0,798 chrIX 432363 . G A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132;DP=77;Dels=0.00;FS=9.129;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=54.47;MQ0=1;MQRankSum=-3.718;QD=0.31;ReadPosRankSum=-2.802;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,8:77:54:54,0,2372 chrIX 432374 . C T 191.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DP=76;Dels=0.00;FS=17.112;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=53.03;MQ0=3;MQRankSum=-4.711;QD=2.51;ReadPosRankSum=-3.416;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,14:76:99:221,0,2159 chrM 20934 . T G 18260.01 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.890;DP=552;Dels=0.00;FS=0.000;HaplotypeScore=12.4992;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.682;QD=33.08;ReadPosRankSum=1.468;SB=-8.732e+03 GT:AD:DP:GQ:PL 1/1:1,550:552:99:18260,1555,0 chrM 30581 . A C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.855;DP=21;Dels=0.00;FS=11.553;HaplotypeScore=1.1567;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=-0.386;QD=0.81;ReadPosRankSum=2.083;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:10,10:21:47:47,0,259 chrM 33467 . T C 2262 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.685;QD=30.57;ReadPosRankSum=1.685;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:1,73:74:99:2295,193,0 chrM 39517 . G T 8380.01 PASS AC=2;AF=1.00;AN=2;DP=247;Dels=0.00;FS=0.000;HaplotypeScore=6.4256;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=33.93;SB=-2.563e+03 GT:AD:DP:GQ:PL 1/1:0,247:247:99:8380,674,0 chrM 49500 . A T 758 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=22.97;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:791,57,0 chrM 56539 . T G 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765;DP=29;Dels=0.00;FS=18.182;HaplotypeScore=1.7351;MLEAC=1;MLEAF=0.500;MQ=52.73;MQ0=0;MQRankSum=0.700;QD=2.17;ReadPosRankSum=-0.184;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,13:29:93:93,0,409 chrM 73651 . A T 46.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.313;DP=144;Dels=0.00;FS=0.000;HaplotypeScore=2.9313;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;MQRankSum=0.192;QD=0.33;ReadPosRankSum=0.650;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:1,143:144:9:79,9,0 chrM 82507 . T A 1579 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=4.9870;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=29.24;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1612,129,0 chrV 48384 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=32.92;SB=-1.104e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2370,190,0 chrV 57842 . T G 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280;DP=43;Dels=0.00;FS=21.538;HaplotypeScore=4.3643;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.681;QD=1.26;ReadPosRankSum=2.300;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,16:43:84:84,0,858 chrV 95153 . C T 2459 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=35.64;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2492,190,0 chrV 100596 . C A 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.541;DP=44;Dels=0.00;FS=66.632;HaplotypeScore=2.9880;MLEAC=1;MLEAF=0.500;MQ=58.08;MQ0=0;MQRankSum=-0.140;QD=1.64;ReadPosRankSum=-4.291;SB=-6.466e-03 GT:AD:DP:GQ:PL 0/1:31,13:44:61:102,0,61 chrV 109375 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=33.40;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1703,132,0 chrV 154531 . T A 2477 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=35.39;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2510,196,0 chrV 160010 . T C 2150 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=25.60;SB=-1.549e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2183,168,0 chrV 217895 . C A 2064 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.98;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2097,157,0 chrV 243686 . G A 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.943;DP=38;Dels=0.03;FS=67.198;HaplotypeScore=3.7715;MLEAC=1;MLEAF=0.500;MQ=59.01;MQ0=0;MQRankSum=1.874;QD=0.92;ReadPosRankSum=-4.411;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:27,10:37:65:65,0,186 chrV 297012 . G A 3117 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=32.81;SB=-1.713e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3150,244,0 chrV 352394 . A G 2045 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=32.98;SB=-1.200e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2078,169,0 chrV 473073 . G A 1940 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.45;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1973,153,0 chrV 517529 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=38.48;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:2111,160,0 chrV 522998 . C T 169.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.690;DP=56;Dels=0.00;FS=78.013;HaplotypeScore=39.8346;MLEAC=1;MLEAF=0.500;MQ=58.33;MQ0=0;MQRankSum=-1.503;QD=3.02;ReadPosRankSum=-2.686;SB=-5.833e-03 GT:AD:DP:GQ:PL 0/1:30,26:56:99:199,0,309 chrV 570023 . G A 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.328;DP=50;Dels=0.00;FS=5.962;HaplotypeScore=1.4972;MLEAC=1;MLEAF=0.500;MQ=51.38;MQ0=0;MQRankSum=-4.318;QD=0.62;ReadPosRankSum=-1.667;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:41,9:50:61:61,0,1379 chrV 570039 . C T 95.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.335;DP=52;Dels=0.00;FS=8.062;HaplotypeScore=2.1301;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=0;MQRankSum=-4.284;QD=1.83;ReadPosRankSum=-0.058;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:42,10:52:99:125,0,1273 chrV 570041 . C T 96.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.939;DP=52;Dels=0.00;FS=11.169;HaplotypeScore=2.1301;MLEAC=1;MLEAF=0.500;MQ=50.47;MQ0=0;MQRankSum=-4.562;QD=1.85;ReadPosRankSum=0.615;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:42,10:52:99:126,0,1345 chrVI 6417 . T C 306.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DP=65;Dels=0.00;FS=35.966;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.07;MQ0=0;MQRankSum=-6.310;QD=4.71;ReadPosRankSum=4.002;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,19:65:99:336,0,1378 chrVI 6434 . A G 306.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.196;DP=65;Dels=0.00;FS=32.436;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.59;MQ0=0;MQRankSum=-6.403;QD=4.71;ReadPosRankSum=0.647;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,20:65:99:336,0,1405 chrVI 6455 . A G 306.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DP=65;Dels=0.00;FS=22.014;HaplotypeScore=3.4087;MLEAC=1;MLEAF=0.500;MQ=49.76;MQ0=0;MQRankSum=-6.488;QD=4.71;ReadPosRankSum=-2.644;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,21:65:99:336,0,1398 chrVI 12416 . T A 1155.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094;DP=107;Dels=0.00;FS=14.299;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.11;MQ0=6;MQRankSum=-3.108;QD=10.79;ReadPosRankSum=-0.354;SB=-6.170e+02 GT:AD:DP:GQ:PL 0/1:58,49:107:99:1185,0,1687 chrVI 65366 . T G 39.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.636;DP=50;Dels=0.00;FS=58.329;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.473;QD=0.78;ReadPosRankSum=-3.069;SB=-4.348e-03 GT:AD:DP:GQ:PL 0/1:39,11:50:69:69,0,1143 chrVI 97634 . T A 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;DP=67;Dels=0.01;FS=17.231;HaplotypeScore=8.4038;MLEAC=1;MLEAF=0.500;MQ=59.31;MQ0=0;MQRankSum=0.379;QD=1.72;ReadPosRankSum=-3.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,24:66:99:145,0,506 chrVI 177372 . G T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.405;DP=74;Dels=0.00;FS=33.293;HaplotypeScore=8.7133;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=-0.786;QD=0.31;ReadPosRankSum=-3.367;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,13:74:53:53,0,1499 chrVI 226147 . T A 21.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241;DP=64;Dels=0.00;FS=27.746;HaplotypeScore=6.1167;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-0.409;QD=0.33;ReadPosRankSum=-1.649;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,5:64:51:51,0,188 chrVI 227503 . A T 106.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223;DP=37;Dels=0.00;FS=62.932;HaplotypeScore=13.2580;MLEAC=1;MLEAF=0.500;MQ=55.13;MQ0=0;MQRankSum=-0.941;QD=2.87;ReadPosRankSum=-2.102;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:18,18:37:99:136,0,121 chrVI 229067 . C T 2361 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=32.34;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2394,193,0 chrVI 229320 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=30.28;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1638,132,0 chrVI 229517 . T C 2241 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=35.02;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2274,184,0 chrVI 229520 . A G 2183 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=34.65;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2216,181,0 chrVI 229790 . G A 1942 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=31.32;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1975,156,0 chrVI 229838 . T A 1947 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=35.40;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1980,153,0 chrVI 230250 . A G 2139 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=1.676;QD=34.50;ReadPosRankSum=0.000;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:2172,172,0 chrVI 230333 . T C 1534 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=35.67;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1567,123,0 chrVI 230357 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=29.20;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1376,111,0 chrVI 230627 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.14;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1979,156,0 chrVI 230861 . G A 2089 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=34.25;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2122,172,0 chrVI 230870 . C T 2295 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9997;MLEAC=2;MLEAF=1.00;MQ=57.96;MQ0=0;QD=32.32;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:2328,190,0 chrVI 230891 . G A 2187 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=32.16;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2220,178,0 chrVI 230918 . C T 2501 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=32.06;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2534,205,0 chrVI 230993 . A G 3013 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.967;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.161;QD=35.03;ReadPosRankSum=1.370;SB=-1.139e+03 GT:AD:DP:GQ:PL 1/1:1,85:86:99:3046,208,0 chrVI 231775 . A G 1908 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.47;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1941,156,0 chrVI 231831 . A G 2196 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.00;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2229,178,0 chrVI 232456 . T C 1520 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=31.67;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1553,123,0 chrVI 232697 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.52;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2111,169,0 chrVI 233456 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.08;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1401,111,0 chrVI 233643 . C T 2661 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=35.01;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2694,214,0 chrVI 233673 . T C 2600 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=34.21;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2633,211,0 chrVI 233830 . T C 1916 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=29.94;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1949,156,0 chrVI 234009 . A C 1491 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.37;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1524,123,0 chrVI 238493 . G A 2390 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=34.64;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2423,190,0 chrVI 238621 . A G 2067 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.30;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2100,169,0 chrVI 238707 . A G 1663 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.98;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1696,135,0 chrVI 239478 . G A 1970 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.83;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2003,163,0 chrVI 239639 . C G 2164 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.29;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2197,175,0 chrVI 239696 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.51;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1626,126,0 chrVI 239828 . G T 1381 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.18;MQ0=0;QD=33.68;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1414,117,0 chrVI 239842 . T C 1295 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.85;MQ0=0;QD=32.37;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1328,111,0 chrVI 239854 . T C 1366 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=30.36;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1399,123,0 chrVI 239986 . G A 1562 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.33;SB=-3.380e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1595,123,0 chrVI 241183 . C T 1337 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=32.61;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1370,111,0 chrVI 242843 . C G 1524 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=33.87;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1557,123,0 chrVI 257096 . T C 1274 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=36.40;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1307,105,0 chrVI 258551 . C A 1156 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=32.11;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1189,96,0 chrVI 259953 . T A 1547 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.258;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.995;QD=32.91;ReadPosRankSum=0.774;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:94:1580,94,0 chrVI 269435 . C A 1387 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=35.56;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1420,114,0 chrVII 595 . T C 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.398;DP=43;Dels=0.00;FS=2.463;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.53;MQ0=0;MQRankSum=-3.767;QD=1.16;ReadPosRankSum=1.267;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,7:43:80:80,0,1189 chrVII 603 . T C 50.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.234;DP=43;Dels=0.00;FS=2.463;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=54.53;MQ0=0;MQRankSum=-3.767;QD=1.16;ReadPosRankSum=1.102;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,7:43:80:80,0,1195 chrVII 607 . C T 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.305;DP=44;Dels=0.00;FS=2.401;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=-3.786;QD=1.07;ReadPosRankSum=0.963;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,7:44:77:77,0,1195 chrVII 609 . G A 53.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.129;DP=43;Dels=0.00;FS=2.389;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=54.05;MQ0=0;MQRankSum=-3.767;QD=1.23;ReadPosRankSum=0.839;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,7:43:83:83,0,1093 chrVII 641 . G A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.689;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.38;MQ0=0;MQRankSum=-3.236;QD=1.28;ReadPosRankSum=-0.547;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:25,7:32:71:71,0,807 chrVII 662 . C T 73.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.577;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.80;MQ0=0;MQRankSum=-3.820;QD=2.21;ReadPosRankSum=0.101;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:24,9:33:99:103,0,766 chrVII 673 . T G 67.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.63;MQ0=0;MQRankSum=-3.302;QD=1.91;ReadPosRankSum=1.000;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:26,9:35:97:97,0,880 chrVII 680 . T C 68.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.035;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.66;MQ0=0;MQRankSum=-3.309;QD=2.00;ReadPosRankSum=1.482;SB=-2.501e+01 GT:AD:DP:GQ:PL 0/1:26,8:34:98:98,0,896 chrVII 686 . A T 59.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.343;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.20;MQ0=0;MQRankSum=-3.118;QD=1.59;ReadPosRankSum=1.974;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:29,8:37:89:89,0,990 chrVII 784 . T A 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DP=36;Dels=0.00;FS=18.019;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.76;MQ0=1;MQRankSum=-5.017;QD=2.56;ReadPosRankSum=-0.450;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:20,16:36:99:122,0,675 chrVII 6799 . T C 1154 filter AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.28;MQ0=4;QD=27.48;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1187,102,0 chrVII 6822 . C T 766 filter AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=4;QD=23.21;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:72:799,72,0 chrVII 6857 . A T 159.13 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.23;MQ0=1;QD=12.24;SB=-6.088e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:18:192,18,0 chrVII 6889 . A G 84.26 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=12.10;MQ0=2;QD=4.96;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,17:17:15:117,15,0 chrVII 6904 . A G 62.51 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.46;MQ0=2;QD=4.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:12:95,12,0 chrVII 6905 . C T 62.51 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.46;MQ0=2;QD=4.17;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:12:95,12,0 chrVII 6925 . A T 84.26 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.12;MQ0=2;QD=5.62;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:15:117,15,0 chrVII 61936 . C T 1214 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.71;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1247,99,0 chrVII 62104 . G C 2477 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.7124;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.47;SB=-1.058e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2510,205,0 chrVII 62321 . G A 1936 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=34.57;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1969,156,0 chrVII 66126 . T G 1723 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.956;DP=58;Dels=0.00;FS=4.210;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;MQRankSum=-0.239;QD=29.71;ReadPosRankSum=-0.777;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1756,113,0 chrVII 66339 . G A 1332 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.15;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1365,111,0 chrVII 66605 . G A 1781 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=32.98;SB=-9.220e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1814,150,0 chrVII 66617 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=30.84;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1575,135,0 chrVII 66622 . T C 1514 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=31.54;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1547,132,0 chrVII 66921 . G A 1242 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.35;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1275,102,0 chrVII 67009 . G A 1691 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=34.51;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1724,135,0 chrVII 67253 . T C 2200 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=33.85;SB=-1.060e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2233,187,0 chrVII 67624 . A G 1760 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.88;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1793,147,0 chrVII 68009 . T A 2148 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=33.56;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:0,63:64:99:2181,172,0 chrVII 68067 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=33.27;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1730,138,0 chrVII 68203 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.27;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1575,129,0 chrVII 68211 . G A 1589 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.54;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1622,129,0 chrVII 68374 . A T 2016 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=33.60;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2049,169,0 chrVII 68385 . G A 2175 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=35.08;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2208,181,0 chrVII 68542 . T C 1507 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.91;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1540,126,0 chrVII 69214 . A T 1733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.423;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.990;QD=30.95;ReadPosRankSum=0.371;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1766,117,0 chrVII 69249 . G T 1646 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=32.27;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1679,135,0 chrVII 69315 . T C 1829 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.03;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1862,153,0 chrVII 69396 . C A 1338 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.01;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=60.26;MQ0=0;QD=19.68;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1371,108,0 chrVII 69424 . T C 1954 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=32.03;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1987,156,0 chrVII 70474 . T C 2035 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.039;QD=32.82;ReadPosRankSum=1.559;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:2068,137,0 chrVII 70531 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.11;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1578,129,0 chrVII 70537 . T C 1549 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.20;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1582,129,0 chrVII 70633 . T A 1167 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=34.32;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1200,96,0 chrVII 70861 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=34.50;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1827,147,0 chrVII 71410 . G A 2067 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.45;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2100,169,0 chrVII 71685 . A G 1795 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3548;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=33.87;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1828,147,0 chrVII 72738 . A G 1040 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.52;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:1073,87,0 chrVII 72788 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.36;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:1126,93,0 chrVII 72874 . C T 1272 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1305,111,0 chrVII 72941 . G A 1655 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=31.23;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1688,138,0 chrVII 73077 . G A 2178 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=34.03;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2211,178,0 chrVII 73286 . A G 1164 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=30.63;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1197,96,0 chrVII 73336 . G A 999 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=33.30;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:1032,81,0 chrVII 73362 . G T 1489 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7287;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=33.09;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1522,123,0 chrVII 73438 . C T 1600 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.65;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1633,132,0 chrVII 73453 . A G 1673 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=32.80;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1706,138,0 chrVII 73493 . C G 1479 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=32.87;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1512,123,0 chrVII 73615 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=34.25;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1814,150,0 chrVII 73684 . A G 1694 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=30.80;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1727,141,0 chrVII 73916 . A G 1166 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=35.33;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1199,96,0 chrVII 73941 . C G 1285 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=30.60;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:1318,108,0 chrVII 75209 . T C 1120 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.94;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:1153,93,0 chrVII 75261 . G A 1250 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=35.71;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1283,102,0 chrVII 75286 . C G 1040 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=34.67;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:90:1073,90,0 chrVII 75292 . A G 1057 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=34.10;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:1090,90,0 chrVII 75341 . T C 964 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.04;MQ0=0;QD=33.24;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:997,84,0 chrVII 75351 . A T 1082 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=33.81;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:1115,90,0 chrVII 75358 . C G 1211 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=33.64;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1244,102,0 chrVII 75428 . T C 1552 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=35.27;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1585,126,0 chrVII 76021 . A T 1860 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=35.77;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1893,150,0 chrVII 76058 . G A 1801 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=33.35;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1834,147,0 chrVII 76149 . G A 2273 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=32.47;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2306,187,0 chrVII 76247 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=31.85;SB=-2.200e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1275,105,0 chrVII 76490 . C T 2717 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=36.23;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2750,223,0 chrVII 76512 . G A 2565 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.3779;MLEAC=2;MLEAF=1.00;MQ=56.27;MQ0=0;QD=36.64;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2598,208,0 chrVII 76519 . G A 2607 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=35.23;SB=-2.210e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2640,217,0 chrVII 76600 . G A 1279 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=31.97;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1312,105,0 chrVII 76663 . G C 1130 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=31.39;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1163,99,0 chrVII 76882 . T C 1651 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=28.47;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1684,135,0 chrVII 76989 . T C 1651 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=33.02;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1684,135,0 chrVII 77025 . T C 2047 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=33.02;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2080,169,0 chrVII 77052 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=57.73;MQ0=0;QD=33.41;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2171,172,0 chrVII 80634 . T A 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.068;DP=49;Dels=0.00;FS=113.800;HaplotypeScore=1.9825;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=0.155;QD=0.41;ReadPosRankSum=-2.328;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:32,16:49:50:50,0,573 chrVII 104051 . G T 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.990;DP=48;Dels=0.00;FS=87.011;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.477;QD=2.02;ReadPosRankSum=-4.199;SB=-6.175e-03 GT:AD:DP:GQ:PL 0/1:34,14:48:99:127,0,985 chrVII 167640 . G A 112.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.484;DP=52;Dels=0.00;FS=82.876;HaplotypeScore=3.9134;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.696;QD=2.15;ReadPosRankSum=-4.416;SB=-6.502e-03 GT:AD:DP:GQ:PL 0/1:33,19:52:99:142,0,205 chrVII 201883 . T C 2364 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=34.76;SB=-1.222e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2397,193,0 chrVII 209521 . G C 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656;DP=38;Dels=0.00;FS=19.064;HaplotypeScore=5.4506;MLEAC=1;MLEAF=0.500;MQ=58.90;MQ0=0;MQRankSum=-1.648;QD=0.61;ReadPosRankSum=-2.230;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,7:38:53:53,0,827 chrVII 334658 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=35.55;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:2024,160,0 chrVII 335241 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.73;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1517,123,0 chrVII 366621 . C T 1446 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=35.27;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1479,117,0 chrVII 367258 . C T 2046 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.28;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2079,166,0 chrVII 367741 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.17;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1966,156,0 chrVII 367828 . G A 1302 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.972;QD=31.76;ReadPosRankSum=-1.225;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:89:1335,89,0 chrVII 368041 . T G 1424 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.64;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1457,117,0 chrVII 368341 . C T 1166 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=32.39;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1199,96,0 chrVII 369167 . G A 2649 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=33.53;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2682,214,0 chrVII 369353 . T C 1904 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=34.00;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1937,159,0 chrVII 369363 . C T 2070 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=35.08;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2103,172,0 chrVII 369600 . A G 2199 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.32;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:2232,184,0 chrVII 369666 . G T 2579 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.6040;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=36.32;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2612,208,0 chrVII 369881 . C A 1796 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=33.89;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1829,144,0 chrVII 369922 . G A 1773 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=34.76;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1806,144,0 chrVII 370317 . C T 1604 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.64;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1637,129,0 chrVII 370641 . G T 2205 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=31.50;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2238,181,0 chrVII 370647 . A G 2195 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=32.28;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2228,181,0 chrVII 370737 . C G 1644 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.98;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1677,135,0 chrVII 371244 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=55.60;MQ0=0;QD=34.29;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1336,111,0 chrVII 371263 . G A 1282 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=29.81;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1315,114,0 chrVII 371265 . A G 1327 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=30.86;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1360,120,0 chrVII 371335 . G A 2164 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=34.90;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2197,181,0 chrVII 371489 . T G 1338 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=30.41;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1371,111,0 chrVII 371528 . A G 1573 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.662;DP=49;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;MQRankSum=1.662;QD=32.10;ReadPosRankSum=0.813;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:1,48:49:99:1606,132,0 chrVII 371640 . T C 2441 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=29.41;SB=-1.268e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2474,202,0 chrVII 371877 . A G 1722 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=35.14;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1755,141,0 chrVII 371937 . A G 1654 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.76;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1687,141,0 chrVII 372033 . G C 1890 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.03;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1923,156,0 chrVII 372223 . T G 2793 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=32.10;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2826,232,0 chrVII 372293 . G A 2890 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=35.68;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2923,235,0 chrVII 372417 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.82;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2035,166,0 chrVII 372605 . A T 2183 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=34.11;SB=-1.138e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2216,178,0 chrVII 372717 . G A 2252 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=35.75;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2285,181,0 chrVII 372926 . A C 2613 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=59.78;MQ0=0;QD=30.74;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2646,226,0 chrVII 373258 . A G 1158 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=33.09;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1191,96,0 chrVII 373531 . A G 2165 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=34.37;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2198,178,0 chrVII 373580 . T C 1962 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=34.42;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1995,162,0 chrVII 373624 . C T 1846 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=34.19;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1879,150,0 chrVII 373646 . C T 1740 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.51;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1773,141,0 chrVII 373713 . T C 1469 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=32.64;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1502,126,0 chrVII 373766 . C T 1816 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=33.02;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1849,147,0 chrVII 373781 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=28.07;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1717,141,0 chrVII 373940 . C G 1785 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.58;MQ0=0;QD=33.68;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1818,150,0 chrVII 373957 . A T 1817 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=52.99;MQ0=0;QD=29.31;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1850,162,0 chrVII 373958 . C T 1777 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=52.86;MQ0=0;QD=29.13;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1810,156,0 chrVII 374354 . A G 2187 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=34.17;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2220,181,0 chrVII 374582 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=32.20;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1482,120,0 chrVII 374962 . C G 1438 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.431;DP=46;Dels=0.00;FS=3.617;HaplotypeScore=8.4487;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=1.657;QD=31.26;ReadPosRankSum=0.151;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1471,120,0 chrVII 374973 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.5774;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=34.21;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1641,129,0 chrVII 375001 . G A 1342 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=31.95;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1375,111,0 chrVII 375036 . G A 1324 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=33.95;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1357,108,0 chrVII 375227 . A T 2264 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=34.83;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2297,181,0 chrVII 375494 . G T 2585 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=34.93;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2618,208,0 chrVII 375538 . G C 2021 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=34.25;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2054,169,0 chrVII 376112 . T A 2133 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.97;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2166,175,0 chrVII 376235 . C T 1877 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=34.13;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1910,153,0 chrVII 376314 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=35.25;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2289,181,0 chrVII 376364 . A G 2215 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=35.16;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2248,181,0 chrVII 376705 . G A 2146 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=33.53;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2179,172,0 chrVII 376883 . A T 1566 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.32;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1599,126,0 chrVII 377024 . C T 1987 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;MQRankSum=-0.119;QD=34.26;ReadPosRankSum=0.179;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:2020,127,0 chrVII 377048 . C T 1982 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.457;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9976;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;MQRankSum=-0.852;QD=31.46;ReadPosRankSum=1.292;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:2015,142,0 chrVII 377049 . C T 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.565;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.9976;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=-1.732;QD=31.82;ReadPosRankSum=1.397;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:2006,140,0 chrVII 377277 . A G 2084 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=33.61;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2117,175,0 chrVII 377766 . G A 2108 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.990;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=2.5210;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;MQRankSum=1.683;QD=30.11;ReadPosRankSum=0.346;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:2141,144,0 chrVII 378078 . C A 1589 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=32.43;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1622,132,0 chrVII 379743 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=31.14;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1870,153,0 chrVII 379901 . C A 1559 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=36.26;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1592,126,0 chrVII 380141 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.11;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2250,181,0 chrVII 380177 . A T 2640 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.74;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2673,214,0 chrVII 380323 . G A 1735 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.15;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1768,141,0 chrVII 380368 . T C 1529 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.98;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1562,126,0 chrVII 380930 . A G 2079 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=34.08;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2112,169,0 chrVII 381313 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=30.39;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1522,120,0 chrVII 381438 . A G 1721 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.75;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1754,144,0 chrVII 381441 . C T 1725 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.17;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1758,144,0 chrVII 381517 . C G 1650 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=34.37;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1683,138,0 chrVII 381897 . G A 1299 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=33.31;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1332,108,0 chrVII 382144 . A C 2369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=70;Dels=0.00;FS=4.649;HaplotypeScore=0.9995;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;MQRankSum=-0.445;QD=33.84;ReadPosRankSum=1.287;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:2402,161,0 chrVII 382210 . A G 2633 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.91;SB=-1.365e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2666,214,0 chrVII 382476 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.70;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1718,138,0 chrVII 382993 . G A 2154 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=35.31;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2187,172,0 chrVII 383010 . G A 2401 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.0818;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=31.18;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2434,199,0 chrVII 383348 . T C 1593 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.63;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1626,132,0 chrVII 383402 . A C 1473 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.34;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1506,123,0 chrVII 383465 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=60.59;MQ0=0;QD=31.45;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2832,223,0 chrVII 383573 . G T 2583 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=33.55;SB=-1.397e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2616,205,0 chrVII 383584 . T C 2432 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=34.74;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2465,199,0 chrVII 383893 . A G 1484 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.57;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1517,126,0 chrVII 383977 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=34.70;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1664,135,0 chrVII 384196 . C A 1590 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=33.12;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1623,129,0 chrVII 384239 . T C 1162 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.20;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1195,96,0 chrVII 384425 . T C 1854 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.42;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1887,153,0 chrVII 384641 . C A 2310 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.8888;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=34.48;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2343,193,0 chrVII 384678 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=32.25;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2000,165,0 chrVII 385178 . T A 1836 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=31.66;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1869,153,0 chrVII 385194 . C T 1472 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=27.77;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1505,123,0 chrVII 385288 . A T 1637 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.40;MQ0=0;QD=33.41;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1670,132,0 chrVII 385495 . A C 1120 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.88;MQ0=0;QD=29.47;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1153,102,0 chrVII 385519 . T C 1096 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=28.10;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1129,102,0 chrVII 385522 . G T 1095 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.66;MQ0=0;QD=26.71;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1128,102,0 chrVII 385525 . A G 1091 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.68;MQ0=0;QD=27.27;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1124,102,0 chrVII 385531 . C T 1059 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=29.70;MQ0=0;QD=27.15;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1092,99,0 chrVII 385534 . C T 1059 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.9648;MLEAC=2;MLEAF=1.00;MQ=28.47;MQ0=0;QD=27.87;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1092,99,0 chrVII 385540 . A G 987 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.03;FS=0.000;HaplotypeScore=1.9648;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=0;QD=24.67;SB=-2.330e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:93:1020,93,0 chrVII 385542 . T C 976 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.9648;MLEAC=2;MLEAF=1.00;MQ=30.82;MQ0=0;MQRankSum=1.473;QD=24.40;ReadPosRankSum=-0.953;SB=-2.240e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:93:1009,93,0 chrVII 385555 . C A 1174 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.18;MQ0=0;QD=23.48;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1207,108,0 chrVII 385570 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.56;MQ0=0;QD=26.63;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1631,138,0 chrVII 385619 . C T 2128 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=33.25;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2161,172,0 chrVII 385714 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=1;QD=31.98;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:1,53:54:99:1760,141,0 chrVII 386539 . T C 1668 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.35;MQ0=0;QD=28.27;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1701,153,0 chrVII 386549 . A C 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=0.52;SB=-6.328e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:6:57,6,0 chrVII 386557 . A C 1563 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=26.95;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1596,144,0 chrVII 386563 . T C 1464 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.53;MQ0=0;QD=27.11;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1497,135,0 chrVII 386581 . G A 1671 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.56;MQ0=0;QD=28.32;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1704,153,0 chrVII 386593 . C T 1811 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.02;MQ0=0;QD=28.75;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1844,165,0 chrVII 386596 . C T 1748 SnpCluster AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=33.48;MQ0=0;QD=26.48;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1781,165,0 chrVII 386599 . C T 1623 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=37.37;MQ0=0;QD=23.87;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1656,147,0 chrVII 386608 . G A 1696 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=40.86;MQ0=0;QD=26.92;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1729,150,0 chrVII 387977 . T C 2463 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=34.21;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2496,199,0 chrVII 389105 . G A 1908 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.47;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1941,153,0 chrVII 390472 . C G 1569 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=23.42;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1602,129,0 chrVII 390484 . A T 2203 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.2993;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=33.38;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,65:66:99:2236,178,0 chrVII 390921 . T C 1300 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1333,108,0 chrVII 391138 . G T 1693 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.55;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1726,135,0 chrVII 391186 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=30.35;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1581,132,0 chrVII 391249 . G A 2002 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.12;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2035,163,0 chrVII 391279 . A G 1360 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.38;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1393,114,0 chrVII 392058 . A G 1840 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.2337;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=34.07;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1873,156,0 chrVII 393110 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.57;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1865,150,0 chrVII 393326 . T C 1334 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.11;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1367,108,0 chrVII 393416 . G A 1895 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=34.45;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1928,153,0 chrVII 393726 . G A 2341 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.215;DP=67;Dels=0.00;FS=4.281;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;MQRankSum=0.440;QD=34.94;ReadPosRankSum=0.543;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:2374,156,0 chrVII 393780 . G A 1769 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.591;DP=82;Dels=0.00;FS=5.336;HaplotypeScore=2.4671;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=-0.211;QD=21.57;ReadPosRankSum=-0.676;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1802,163,0 chrVII 393782 . A G 1774 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.225;DP=82;Dels=0.00;FS=5.916;HaplotypeScore=1.8888;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;MQRankSum=0.042;QD=21.63;ReadPosRankSum=-0.338;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:1807,163,0 chrVII 394511 . T A 1368 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=27.36;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1401,114,0 chrVII 394661 . A G 1647 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=32.94;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1680,135,0 chrVII 394889 . C A 1351 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=30.70;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1384,120,0 chrVII 394918 . G A 1300 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=27.08;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1333,117,0 chrVII 394922 . G C 1320 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.47;MQ0=0;QD=26.94;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1353,120,0 chrVII 394946 . A G 1354 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=42.53;MQ0=0;QD=23.75;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1387,120,0 chrVII 394959 . T G 1516 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.35;MQ0=0;QD=26.60;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1549,132,0 chrVII 395239 . A G 1711 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=2.3924;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=34.22;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1744,141,0 chrVII 395241 . C G 1748 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=34.96;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1781,144,0 chrVII 395359 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=31.98;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1408,111,0 chrVII 395552 . T C 24.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=0.34;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:6:56,6,0 chrVII 395608 . G T 1738 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=34.08;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1771,141,0 chrVII 395717 . G C 1331 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=30.95;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1364,108,0 chrVII 396018 . T C 1479 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=35.21;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:1512,120,0 chrVII 396269 . A G 1651 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.37;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1684,138,0 chrVII 396452 . A G 1179 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=29.47;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1212,99,0 chrVII 396575 . T C 1687 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.7335;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=32.44;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1720,141,0 chrVII 396581 . C T 1625 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9996;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.11;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1658,132,0 chrVII 400572 . A T 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.163;DP=68;Dels=0.00;FS=121.856;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.72;MQ0=0;MQRankSum=0.516;QD=0.40;ReadPosRankSum=-5.213;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:57,11:68:57:57,0,131 chrVII 401674 . C A 1600 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.06;MQ0=0;QD=31.37;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1633,144,0 chrVII 401698 . T A 1261 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.65;MQ0=1;QD=28.66;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1294,123,0 chrVII 530010 . C A 91.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.503;DP=119;Dels=0.00;FS=1.016;HaplotypeScore=36.9656;MLEAC=1;MLEAF=0.500;MQ=44.00;MQ0=0;MQRankSum=-5.147;QD=0.76;ReadPosRankSum=0.615;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:100,19:119:99:121,0,1984 chrVII 530016 . A C 215.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.256;DP=121;Dels=0.00;FS=15.553;HaplotypeScore=50.8519;MLEAC=1;MLEAF=0.500;MQ=44.31;MQ0=0;MQRankSum=-2.855;QD=1.78;ReadPosRankSum=-1.337;SB=-4.910e+02 GT:AD:DP:GQ:PL 0/1:77,43:121:99:245,0,1876 chrVII 530022 . C A 82.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.334;DP=121;Dels=0.00;FS=0.000;HaplotypeScore=48.2352;MLEAC=1;MLEAF=0.500;MQ=44.31;MQ0=0;MQRankSum=-5.221;QD=0.68;ReadPosRankSum=1.785;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:101,20:121:99:112,0,2014 chrVII 530028 . C A 85.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.895;DP=119;Dels=0.00;FS=0.953;HaplotypeScore=47.4886;MLEAC=1;MLEAF=0.500;MQ=44.00;MQ0=0;MQRankSum=-4.350;QD=0.71;ReadPosRankSum=2.335;SB=-9.301e+01 GT:AD:DP:GQ:PL 0/1:99,20:119:99:115,0,1979 chrVII 530034 . A C 499.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402;DP=111;Dels=0.01;FS=15.272;HaplotypeScore=30.3727;MLEAC=1;MLEAF=0.500;MQ=42.91;MQ0=0;MQRankSum=-1.555;QD=4.50;ReadPosRankSum=0.518;SB=-5.340e+02 GT:AD:DP:GQ:PL 0/1:63,46:110:99:529,0,1414 chrVII 530071 . A T 59.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.516;DP=88;Dels=0.01;FS=19.027;HaplotypeScore=97.9819;MLEAC=1;MLEAF=0.500;MQ=46.79;MQ0=0;MQRankSum=-4.760;QD=0.67;ReadPosRankSum=-2.305;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:64,23:87:89:89,0,1509 chrVII 530076 . T A 173.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DP=85;Dels=0.00;FS=23.999;HaplotypeScore=45.2744;MLEAC=1;MLEAF=0.500;MQ=48.31;MQ0=0;MQRankSum=-4.386;QD=2.04;ReadPosRankSum=-3.447;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,12:85:99:203,0,1443 chrVII 530079 . C A 367.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.521;DP=84;Dels=0.00;FS=30.969;HaplotypeScore=29.8118;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=0;MQRankSum=-4.855;QD=4.37;ReadPosRankSum=-5.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:63,21:84:99:397,0,1462 chrVII 530082 . T A 158.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.579;DP=84;Dels=0.00;FS=24.400;HaplotypeScore=20.8290;MLEAC=1;MLEAF=0.500;MQ=48.83;MQ0=0;MQRankSum=-4.143;QD=1.88;ReadPosRankSum=-4.744;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,12:84:99:188,0,1573 chrVII 530093 . A C 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;DP=79;Dels=0.00;FS=16.887;HaplotypeScore=1.9962;MLEAC=1;MLEAF=0.500;MQ=53.54;MQ0=0;MQRankSum=-4.055;QD=0.25;ReadPosRankSum=-4.623;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,8:79:50:50,0,1790 chrVII 556013 . G A 55.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.780;DP=48;Dels=0.04;FS=105.049;HaplotypeScore=7.2309;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=0.234;QD=1.15;ReadPosRankSum=-5.015;SB=-2.684e+00 GT:AD:DP:GQ:PL 0/1:31,15:46:85:85,0,414 chrVII 583821 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.45;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1790,147,0 chrVII 627217 . C T 76.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.518;DP=60;Dels=0.03;FS=130.483;HaplotypeScore=7.1696;MLEAC=1;MLEAF=0.500;MQ=57.25;MQ0=0;MQRankSum=0.430;QD=1.27;ReadPosRankSum=-5.447;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:38,19:58:99:106,0,523 chrVII 627228 . G A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353;DP=43;Dels=0.00;FS=52.053;HaplotypeScore=8.7085;MLEAC=1;MLEAF=0.500;MQ=56.13;MQ0=0;MQRankSum=-2.785;QD=0.42;ReadPosRankSum=-3.201;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:38,5:43:48:48,0,592 chrVII 708380 . T C 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110;DP=102;Dels=0.00;FS=10.459;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.63;MQ0=20;MQRankSum=-5.536;QD=0.93;ReadPosRankSum=1.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:65,37:102:99:125,0,2033 chrVII 708694 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.706;DP=105;Dels=0.00;FS=3.261;HaplotypeScore=2.1500;MLEAC=1;MLEAF=0.500;MQ=22.22;MQ0=54;MQRankSum=-0.973;QD=0.40;ReadPosRankSum=0.332;SB=-3.001e+01 GT:AD:DP:GQ:PL 0/1:74,31:105:72:72,0,743 chrVII 709221 . T C 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081;DP=144;Dels=0.00;FS=21.301;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=14.94;MQ0=82;MQRankSum=-2.450;QD=1.12;ReadPosRankSum=-0.154;SB=-7.301e+01 GT:AD:DP:GQ:PL 0/1:98,46:144:99:191,0,792 chrVII 709235 . C A 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.439;DP=154;Dels=0.00;FS=14.195;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=14.85;MQ0=86;MQRankSum=-2.981;QD=0.82;ReadPosRankSum=0.531;SB=-8.201e+01 GT:AD:DP:GQ:PL 0/1:110,44:154:99:157,0,882 chrVII 709464 . A G 503.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.246;DP=103;Dels=0.00;FS=9.622;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.06;MQ0=22;MQRankSum=-2.251;QD=4.88;ReadPosRankSum=-0.586;SB=-1.510e+02 GT:AD:DP:GQ:PL 0/1:61,42:103:99:533,0,1457 chrVII 709503 . T C 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719;DP=85;Dels=0.00;FS=6.422;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.68;MQ0=23;MQRankSum=-4.891;QD=0.49;ReadPosRankSum=-1.928;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,37:85:72:72,0,1400 chrVII 709566 . C T 177.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;DP=100;Dels=0.00;FS=1.394;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=18.10;MQ0=58;MQRankSum=-2.861;QD=1.77;ReadPosRankSum=1.549;SB=-3.201e+01 GT:AD:DP:GQ:PL 0/1:62,38:100:99:207,0,427 chrVII 709707 . A G 1470.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.126;DP=145;Dels=0.00;FS=15.057;HaplotypeScore=1.8245;MLEAC=1;MLEAF=0.500;MQ=36.33;MQ0=21;MQRankSum=0.007;QD=10.14;ReadPosRankSum=1.917;SB=-7.700e+02 GT:AD:DP:GQ:PL 0/1:82,63:145:99:1500,0,1576 chrVII 709779 . C A 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.224;DP=141;Dels=0.00;FS=21.617;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=32.56;MQ0=18;MQRankSum=-0.202;QD=1.00;ReadPosRankSum=0.114;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,22:141:99:171,0,2683 chrVII 709866 . A C 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.323;DP=127;Dels=0.00;FS=27.149;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.39;MQ0=7;MQRankSum=-0.691;QD=0.43;ReadPosRankSum=-0.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,20:127:84:84,0,3083 chrVII 710003 . G A 314.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.938;DP=132;Dels=0.00;FS=5.718;HaplotypeScore=2.7044;MLEAC=1;MLEAF=0.500;MQ=17.57;MQ0=69;MQRankSum=-0.518;QD=2.38;ReadPosRankSum=0.868;SB=-1.640e+02 GT:AD:DP:GQ:PL 0/1:103,29:132:99:344,0,766 chrVII 710301 . C T 334.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.939;DP=145;Dels=0.00;FS=11.016;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=25.50;MQ0=57;MQRankSum=-0.920;QD=2.30;ReadPosRankSum=1.470;SB=-7.001e+01 GT:AD:DP:GQ:PL 0/1:112,33:145:99:364,0,1372 chrVII 710308 . G T 302.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.854;DP=150;Dels=0.00;FS=13.801;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.25;MQ0=62;MQRankSum=-0.568;QD=2.01;ReadPosRankSum=2.565;SB=-4.201e+01 GT:AD:DP:GQ:PL 0/1:117,33:150:99:332,0,1318 chrVII 710425 . G A 201.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.393;DP=99;Dels=0.00;FS=18.372;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=16.81;MQ0=51;MQRankSum=-0.625;QD=2.03;ReadPosRankSum=-0.625;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,28:99:99:231,0,530 chrVII 710655 . C T 829.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.686;DP=140;Dels=0.00;FS=4.655;HaplotypeScore=1.8401;MLEAC=1;MLEAF=0.500;MQ=42.61;MQ0=8;MQRankSum=-0.289;QD=5.92;ReadPosRankSum=-0.681;SB=-3.440e+02 GT:AD:DP:GQ:PL 0/1:98,42:140:99:859,0,2488 chrVII 710851 . G C 529.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351;DP=112;Dels=0.00;FS=8.136;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=27.80;MQ0=36;MQRankSum=-0.598;QD=4.72;ReadPosRankSum=-0.996;SB=-1.590e+02 GT:AD:DP:GQ:PL 0/1:78,34:112:99:559,0,1248 chrVII 710949 . T C 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678;DP=64;Dels=0.00;FS=13.031;HaplotypeScore=1.8938;MLEAC=1;MLEAF=0.500;MQ=42.41;MQ0=11;MQRankSum=-5.077;QD=1.44;ReadPosRankSum=-2.270;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,22:64:99:122,0,1421 chrVII 711063 . C T 305.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.164;DP=81;Dels=0.00;FS=12.881;HaplotypeScore=1.6643;MLEAC=1;MLEAF=0.500;MQ=45.50;MQ0=11;MQRankSum=-1.767;QD=3.77;ReadPosRankSum=0.247;SB=-5.201e+01 GT:AD:DP:GQ:PL 0/1:53,28:81:99:335,0,1627 chrVII 711066 . A T 309.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DP=80;Dels=0.00;FS=12.881;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=45.48;MQ0=10;MQRankSum=-1.534;QD=3.86;ReadPosRankSum=1.287;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:53,27:80:99:339,0,1600 chrVII 711237 . C T 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.387;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.89;MQ0=4;MQRankSum=-4.322;QD=0.80;ReadPosRankSum=0.933;SB=-7.901e+01 GT:AD:DP:GQ:PL 0/1:79,19:98:99:108,0,2445 chrVII 711348 . T C 396.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.32;MQ0=16;MQRankSum=-1.625;QD=5.50;ReadPosRankSum=-1.963;SB=-1.770e+02 GT:AD:DP:GQ:PL 0/1:35,37:72:99:426,0,975 chrVII 711525 . T C 292.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.614;DP=155;Dels=0.00;FS=18.143;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=44.52;MQ0=10;MQRankSum=-6.133;QD=1.88;ReadPosRankSum=-2.379;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:117,38:155:99:322,0,3671 chrVII 711738 . T C 847.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343;DP=133;Dels=0.00;FS=3.942;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=36;MQRankSum=-2.197;QD=6.37;ReadPosRankSum=-0.935;SB=-4.130e+02 GT:AD:DP:GQ:PL 0/1:69,63:133:99:877,0,1103 chrVII 711852 . C T 552.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.531;DP=79;Dels=0.00;FS=19.332;HaplotypeScore=1.9601;MLEAC=1;MLEAF=0.500;MQ=38.77;MQ0=8;MQRankSum=-0.018;QD=6.99;ReadPosRankSum=-3.252;SB=-1.990e+02 GT:AD:DP:GQ:PL 0/1:45,34:79:99:582,0,1267 chrVII 770596 . C T 2144 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.98;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2177,175,0 chrVII 807885 . G A 63.02 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.820;DP=41;Dels=0.02;FS=70.126;HaplotypeScore=9.4239;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=-0.795;QD=1.54;ReadPosRankSum=-2.307;SB=-2.895e+00 GT:AD:DP:GQ:PL 0/1:30,10:40:22:93,0,22 chrVII 848557 . G A 89.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.031;DP=36;Dels=0.00;FS=46.465;HaplotypeScore=6.9919;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-0.517;QD=2.47;ReadPosRankSum=-2.893;SB=0.163 GT:AD:DP:GQ:PL 0/1:17,19:36:59:119,0,59 chrVII 848561 . G A 109.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.787;DP=36;Dels=0.00;FS=47.926;HaplotypeScore=10.3026;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=-0.455;QD=3.03;ReadPosRankSum=-3.498;SB=-2.603e+00 GT:AD:DP:GQ:PL 0/1:18,18:36:36:139,0,36 chrVII 919959 . G T 650.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.664;DP=61;Dels=0.00;FS=68.450;HaplotypeScore=38.5113;MLEAC=1;MLEAF=0.500;MQ=50.59;MQ0=0;MQRankSum=-2.328;QD=10.66;ReadPosRankSum=-0.791;SB=0.011 GT:AD:DP:GQ:PL 0/1:20,41:61:99:680,0,448 chrVII 919979 . T A 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.908;DP=57;Dels=0.02;FS=53.365;HaplotypeScore=54.6701;MLEAC=1;MLEAF=0.500;MQ=49.87;MQ0=0;MQRankSum=-3.023;QD=0.86;ReadPosRankSum=-1.417;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,28:56:79:79,0,610 chrVII 919983 . C A 228.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.147;DP=59;Dels=0.00;FS=46.110;HaplotypeScore=40.7547;MLEAC=1;MLEAF=0.500;MQ=50.71;MQ0=0;MQRankSum=-3.831;QD=3.86;ReadPosRankSum=-1.494;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,23:59:99:258,0,590 chrVII 921509 . C A 1025 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.50;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1058,102,0 chrVII 921510 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=19.88;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1047,99,0 chrVII 1023291 . G A 1366 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=33.32;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1399,111,0 chrVII 1051846 . C T 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650;DP=37;Dels=0.00;FS=49.755;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.317;QD=2.08;ReadPosRankSum=-3.809;SB=-6.465e-03 GT:AD:DP:GQ:PL 0/1:21,16:37:99:107,0,197 chrVII 1066753 . G A 1069 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.63;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:87:1102,87,0 chrVII 1073443 . G A 1889 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=34.98;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1922,150,0 chrVIII 1846 . A G 229.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720;DP=48;Dels=0.00;FS=2.555;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=35.98;MQ0=0;MQRankSum=-1.370;QD=4.77;ReadPosRankSum=-4.132;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:29,19:48:99:259,0,692 chrVIII 5556 . C T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.158;DP=69;Dels=0.00;FS=1.289;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=47.70;MQ0=3;MQRankSum=-4.780;QD=0.35;ReadPosRankSum=1.771;SB=-1.201e+01 GT:AD:DP:GQ:PL 0/1:56,13:69:54:54,0,1725 chrVIII 48671 . T G 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422;DP=42;Dels=0.00;FS=11.431;HaplotypeScore=4.8372;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.339;QD=0.95;ReadPosRankSum=1.463;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,11:42:70:70,0,685 chrVIII 81881 . G A 55.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.935;DP=53;Dels=0.00;FS=138.104;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-0.047;QD=1.04;ReadPosRankSum=-5.756;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,18:53:85:85,0,278 chrVIII 81886 . G A 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.814;DP=43;Dels=0.00;FS=74.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.46;MQ0=0;MQRankSum=-0.472;QD=0.84;ReadPosRankSum=-4.050;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:35,8:43:66:66,0,290 chrVIII 161791 . G T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414;DP=39;Dels=0.00;FS=25.099;HaplotypeScore=2.7970;MLEAC=1;MLEAF=0.500;MQ=57.59;MQ0=0;MQRankSum=-0.627;QD=0.67;ReadPosRankSum=-1.450;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,9:39:56:56,0,847 chrVIII 214273 . A T 247.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-8.898;DP=401;Dels=0.01;FS=363.350;HaplotypeScore=21.0552;MLEAC=1;MLEAF=0.500;MQ=36.99;MQ0=13;MQRankSum=-0.357;QD=0.62;ReadPosRankSum=-5.323;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:323,72:395:99:277,0,3098 chrVIII 216123 . C T 1537 filter AC=2;AF=1.00;AN=2;DP=162;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=17.67;MQ0=117;QD=9.49;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:106,56:162:99:1570,129,0 chrVIII 222523 . A G 2208 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.83;MQ0=0;QD=33.97;SB=-1.059e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2241,175,0 chrVIII 236987 . G A 182.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.187;DP=44;Dels=0.00;FS=120.220;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=0.741;QD=4.14;ReadPosRankSum=-5.236;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,22:44:99:212,0,235 chrVIII 236993 . T A 116.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.634;DP=43;Dels=0.00;FS=106.023;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=0.159;QD=2.70;ReadPosRankSum=-4.952;SB=-2.989e+00 GT:AD:DP:GQ:PL 0/1:24,19:43:99:146,0,309 chrVIII 239278 . C A 1043 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=33.65;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:1076,81,0 chrVIII 257896 . G A 1387 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.83;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1420,105,0 chrVIII 289314 . T G 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045;DP=39;Dels=0.00;FS=1.775;HaplotypeScore=4.0284;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.096;QD=0.31;ReadPosRankSum=-2.166;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,12:39:42:42,0,331 chrVIII 317564 . T G 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248;DP=32;Dels=0.00;FS=18.182;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.995;QD=2.59;ReadPosRankSum=1.659;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:19,13:32:99:113,0,388 chrVIII 340348 . G T 164.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774;DP=36;Dels=0.00;FS=35.977;HaplotypeScore=23.5196;MLEAC=1;MLEAF=0.500;MQ=56.30;MQ0=0;MQRankSum=0.892;QD=4.56;ReadPosRankSum=-2.158;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,14:36:99:194,0,553 chrVIII 340359 . A T 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971;DP=38;Dels=0.00;FS=35.575;HaplotypeScore=25.3568;MLEAC=1;MLEAF=0.500;MQ=56.50;MQ0=0;MQRankSum=-0.687;QD=1.32;ReadPosRankSum=-3.076;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:23,15:38:80:80,0,600 chrVIII 340364 . G T 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420;DP=35;Dels=0.00;FS=22.123;HaplotypeScore=12.5989;MLEAC=1;MLEAF=0.500;MQ=56.19;MQ0=0;MQRankSum=-1.327;QD=3.34;ReadPosRankSum=-2.615;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,9:35:99:147,0,704 chrVIII 383954 . T G 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486;DP=21;Dels=0.00;FS=25.611;HaplotypeScore=0.9996;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.516;QD=1.52;ReadPosRankSum=0.303;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:13,8:21:62:62,0,387 chrVIII 384609 . G T 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356;DP=40;Dels=0.00;FS=13.942;HaplotypeScore=3.2601;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.016;QD=2.20;ReadPosRankSum=1.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,12:40:99:118,0,722 chrVIII 387110 . C T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054;DP=55;Dels=0.04;FS=29.565;HaplotypeScore=13.8848;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=0.657;QD=0.26;ReadPosRankSum=-4.081;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,14:53:44:44,0,437 chrVIII 387115 . C T 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277;DP=53;Dels=0.00;FS=54.269;HaplotypeScore=15.7347;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=-0.366;QD=1.02;ReadPosRankSum=-4.817;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,18:53:84:84,0,255 chrVIII 396971 . G A 68.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.425;DP=31;Dels=0.00;FS=50.219;HaplotypeScore=2.3437;MLEAC=1;MLEAF=0.500;MQ=57.55;MQ0=0;MQRankSum=-0.025;QD=2.19;ReadPosRankSum=-2.325;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:25,6:31:98:98,0,280 chrVIII 414154 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=36.79;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1983,153,0 chrVIII 417054 . G A 1199 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.26;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:96:1232,96,0 chrVIII 561837 . A G 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.67;MQ0=59;MQRankSum=0.736;QD=0.38;ReadPosRankSum=-0.736;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:59,3:62:6:55,6,0 chrVIII 561883 . G C 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.79;MQ0=56;QD=0.35;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:53,6:59:6:52,6,0 chrVIII 562354 . C T 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.79;MQ0=27;MQRankSum=0.365;QD=3.00;ReadPosRankSum=1.036;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,8:37:73:141,0,73 chrVIII 562440 . A G 214.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DP=39;Dels=0.00;FS=5.340;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.33;MQ0=4;MQRankSum=-1.717;QD=5.49;ReadPosRankSum=1.917;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,22:39:99:244,0,420 chrVIII 562443 . A G 214.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.983;DP=38;Dels=0.00;FS=5.340;HaplotypeScore=1.9512;MLEAC=1;MLEAF=0.500;MQ=32.76;MQ0=3;MQRankSum=-2.017;QD=5.63;ReadPosRankSum=1.717;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:17,21:38:99:244,0,420 chrX 91418 . G C 1106 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=29.89;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1139,99,0 chrX 97478 . G A 2007 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.02;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2040,172,0 chrX 134130 . T A 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937;DP=39;Dels=0.00;FS=32.598;HaplotypeScore=9.3394;MLEAC=1;MLEAF=0.500;MQ=56.20;MQ0=0;MQRankSum=-0.338;QD=2.64;ReadPosRankSum=-1.581;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,15:39:99:133,0,151 chrX 136931 . G A 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.806;DP=40;Dels=0.03;FS=66.097;HaplotypeScore=1.9243;MLEAC=1;MLEAF=0.500;MQ=59.52;MQ0=0;MQRankSum=-0.373;QD=1.30;ReadPosRankSum=-4.202;SB=-5.431e-03 GT:AD:DP:GQ:PL 0/1:25,13:39:82:82,0,259 chrX 199170 . A C 319 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.34;MQ0=0;QD=21.27;SB=-1.240e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:36:352,36,0 chrX 200219 . A G 544 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.32;MQ0=3;QD=18.76;SB=-1.830e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:54:577,54,0 chrX 297732 . T G 1539 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.98;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1572,135,0 chrX 358232 . G T 141.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.902;DP=42;Dels=0.00;FS=113.886;HaplotypeScore=1.9454;MLEAC=1;MLEAF=0.500;MQ=55.40;MQ0=0;MQRankSum=0.876;QD=3.36;ReadPosRankSum=-4.980;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:22,19:42:69:171,0,69 chrX 358233 . A T 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.831;DP=41;Dels=0.00;FS=91.692;HaplotypeScore=1.9454;MLEAC=1;MLEAF=0.500;MQ=55.28;MQ0=0;MQRankSum=0.905;QD=0.56;ReadPosRankSum=-4.455;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:22,19:41:53:53,0,89 chrX 422219 . T C 1346 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.64;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1379,120,0 chrX 484997 . A G 1883 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=29.42;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1916,165,0 chrX 485198 . G T 1972 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.87;SB=-1.450e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2005,171,0 chrX 485447 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=30.74;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1693,141,0 chrX 486009 . T C 1971 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.31;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2004,172,0 chrX 486166 . A G 2407 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8255;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=31.26;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2440,214,0 chrX 486193 . C T 2485 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=32.27;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2518,211,0 chrX 486223 . C T 2350 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=34.56;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2383,202,0 chrX 486292 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.05;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=29.95;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1321,111,0 chrX 486407 . A C 1664 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=28.20;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1697,150,0 chrX 486432 . T G 1652 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.8413;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=28.00;SB=-3.650e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1685,144,0 chrX 486501 . T C 2283 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.03;FS=0.000;HaplotypeScore=7.7321;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=30.85;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,71:72:99:2316,202,0 chrX 486703 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=30.77;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1479,126,0 chrX 486724 . A G 1466 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=32.58;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1499,129,0 chrX 487279 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=34.02;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1564,135,0 chrX 487716 . T G 1665 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=24.85;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1698,144,0 chrX 487992 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.38;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1835,159,0 chrX 488113 . A C 2190 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=72;Dels=0.00;FS=3.133;HaplotypeScore=1.5717;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.866;QD=30.42;ReadPosRankSum=1.636;SB=-1.148e+03 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2223,190,0 chrX 488152 . A G 2467 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=30.84;SB=-1.002e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2500,214,0 chrX 488230 . T C 1640 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.54;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1673,144,0 chrX 488782 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.32;SB=-9.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1968,168,0 chrX 489013 . C T 2137 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.39;SB=-1.046e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2170,181,0 chrX 489085 . G A 1799 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.31;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1832,156,0 chrX 489262 . A G 2068 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=31.82;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2101,181,0 chrX 489283 . A G 2133 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=32.32;SB=-1.131e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2166,184,0 chrX 489341 . G A 2337 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=33.87;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2370,202,0 chrX 489978 . C G 1713 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=32.94;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1746,147,0 chrX 489987 . T A 1916 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=34.21;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1949,165,0 chrX 490357 . A T 1636 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=32.08;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1669,141,0 chrX 490924 . T C 2228 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=33.25;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2261,193,0 chrX 491340 . C T 1331 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=27.16;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1364,114,0 chrX 491341 . G A 1346 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=27.47;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1379,117,0 chrX 491395 . C T 1447 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=28.94;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1480,126,0 chrX 491789 . C T 1496 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.83;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1529,126,0 chrX 492295 . A T 1322 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=30.05;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1355,114,0 chrX 492486 . A C 1303 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.57;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1336,117,0 chrX 492678 . T C 1243 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.60;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:1276,111,0 chrX 493119 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.8614;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=32.66;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1470,123,0 chrX 493188 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=33.09;SB=-2.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1853,156,0 chrX 493640 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=31.20;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1718,147,0 chrX 494265 . A G 1274 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.11;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1307,114,0 chrX 494352 . A G 2367 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.99;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2400,211,0 chrX 494568 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=30.26;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1909,159,0 chrX 494603 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.09;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1575,135,0 chrX 494940 . A G 1593 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.86;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1626,141,0 chrX 494949 . C A 1678 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.90;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1711,144,0 chrX 494994 . C G 1882 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.90;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1915,168,0 chrX 495112 . T A 1501 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=30.63;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1534,132,0 chrX 495458 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=30.73;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2000,169,0 chrX 496029 . T C 1332 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1365,117,0 chrX 497086 . T C 822 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=47.70;MQ0=0;QD=23.49;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:75:855,75,0 chrX 497096 . A C 662 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.8932;MLEAC=2;MLEAF=1.00;MQ=46.68;MQ0=0;QD=20.06;SB=-3.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:33:60:695,60,0 chrX 497321 . T C 125.09 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.667;DP=14;Dels=0.00;FS=15.611;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=56.62;MQ0=0;MQRankSum=1.867;QD=8.94;ReadPosRankSum=0.933;SB=0.173 GT:AD:DP:GQ:PL 0/1:5,9:14:14:155,0,14 chrX 497589 . A G 562 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=33.06;SB=-2.060e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:51:595,51,0 chrX 497615 . T C 798 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=30.69;SB=-1.730e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:831,72,0 chrX 497765 . C T 1498 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=31.87;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1531,132,0 chrX 497879 . A G 2228 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=31.38;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2261,199,0 chrX 497985 . G C 1095 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.18;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1128,96,0 chrX 498149 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.19;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1655,147,0 chrX 498362 . C T 1839 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=31.17;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1872,156,0 chrX 498452 . G T 2277 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=32.53;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2310,193,0 chrX 498551 . C T 2276 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=32.99;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2309,196,0 chrX 498791 . G A 1676 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.20;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1709,144,0 chrX 499043 . G A 1975 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.92;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2008,169,0 chrX 499118 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=31.12;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1620,135,0 chrX 499382 . G A 1661 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.90;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1694,141,0 chrX 500159 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.80;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1673,141,0 chrX 500192 . A G 1549 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.79;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1582,138,0 chrX 500362 . G A 1371 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=2.3204;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=30.47;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1404,117,0 chrX 500414 . A G 1709 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=32.25;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1742,147,0 chrX 500582 . T G 1421 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=32.30;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1454,123,0 chrX 500836 . A G 1265 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.91;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1298,111,0 chrX 501153 . C A 1519 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=33.02;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1552,129,0 chrX 501169 . T C 1483 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.290;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;MQRankSum=-0.774;QD=31.55;ReadPosRankSum=0.774;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1516,102,0 chrX 501226 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=33.16;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1525,129,0 chrX 501283 . C T 1718 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.81;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1751,147,0 chrX 501427 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=32.23;SB=-1.175e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2450,208,0 chrX 501448 . A C 2732 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=32.14;SB=-1.304e+03 GT:AD:DP:GQ:PL 1/1:0,84:85:99:2765,238,0 chrX 501565 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=32.06;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1700,141,0 chrX 501706 . T A 1638 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=30.91;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1671,147,0 chrX 501961 . C T 1969 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.95;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2002,166,0 chrX 502139 . G C 2248 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=31.66;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2281,199,0 chrX 502163 . G A 2101 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=33.35;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2134,183,0 chrX 502192 . G A 1536 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.68;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1569,132,0 chrX 502260 . G T 2074 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=32.41;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2107,175,0 chrX 502294 . A G 2227 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=33.24;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2260,196,0 chrX 502465 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.45;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1251,108,0 chrX 502471 . C T 1133 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.05;SB=-2.110e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1166,102,0 chrX 502687 . C T 1636 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.72;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1669,141,0 chrX 502696 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.87;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1659,138,0 chrX 502798 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=32.76;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1966,168,0 chrX 502945 . C T 1384 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=2.9627;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=30.09;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1417,117,0 chrX 503332 . C G 1737 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=32.77;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1770,153,0 chrX 503779 . A G 1642 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=30.98;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1675,141,0 chrX 503880 . G C 1366 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.05;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1399,120,0 chrX 503940 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.84;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1816,153,0 chrX 504074 . G A 1467 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.21;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1500,126,0 chrX 504158 . A G 2099 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2132,187,0 chrX 504644 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=30.96;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1581,138,0 chrX 504709 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.19;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1580,135,0 chrX 505150 . G A 2143 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=31.51;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2176,181,0 chrX 505156 . G A 2147 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=31.12;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2180,181,0 chrX 505297 . A T 1674 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.58;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1707,144,0 chrX 505396 . C T 1737 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=32.17;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1770,147,0 chrX 505473 . G A 1737 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.40;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1770,153,0 chrX 505510 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.29;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1833,153,0 chrX 505537 . G A 1515 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=34.43;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1548,129,0 chrX 505548 . C T 1555 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.34;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1588,132,0 chrX 505598 . A G 1319 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.67;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1352,117,0 chrX 505992 . G A 1898 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=32.72;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1931,162,0 chrX 506238 . A G 1738 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=31.60;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1771,153,0 chrX 506424 . G A 1706 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=33.45;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1739,147,0 chrX 506512 . G C 1222 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=29.10;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1255,108,0 chrX 506526 . G C 1279 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=31.97;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1312,114,0 chrX 506574 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.21;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1901,162,0 chrX 506707 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.55;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1610,135,0 chrX 506903 . T C 1590 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.40;MQ0=0;QD=30.58;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1623,141,0 chrX 506909 . G A 1522 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=32.38;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1555,132,0 chrX 506929 . C T 1494 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=32.48;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1527,129,0 chrX 507303 . G T 943 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=33.68;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:81:976,81,0 chrX 507335 . A G 1302 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=32.55;SB=-4.480e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1335,114,0 chrX 507430 . C A 1489 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=28.09;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1522,126,0 chrX 507730 . A G 1643 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=28.82;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1676,144,0 chrX 507744 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=29.80;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1523,129,0 chrX 507782 . G A 1427 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=29.12;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1460,123,0 chrX 508366 . C G 1179 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=31.86;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1212,105,0 chrX 508514 . T A 2014 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.30;MQ0=0;QD=33.57;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2047,175,0 chrX 508525 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=31.62;SB=-1.135e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2183,187,0 chrX 508529 . A C 2074 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.62;MQ0=0;QD=32.41;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2107,186,0 chrX 508627 . T C 1864 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=32.70;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1897,162,0 chrX 508682 . T C 1822 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=31.96;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1855,156,0 chrX 508859 . C T 1203 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.42;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1236,105,0 chrX 509110 . G A 1849 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=30.82;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1882,162,0 chrX 509235 . C T 1293 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=31.54;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1326,111,0 chrX 509746 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=32.09;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1156,96,0 chrX 510183 . C T 1221 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.52;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1254,108,0 chrX 510201 . A T 1274 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.85;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1307,111,0 chrX 510323 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=31.81;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1751,150,0 chrX 510389 . C T 1154 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=30.37;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1187,99,0 chrX 510440 . C T 1091 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.09;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:93:1124,93,0 chrX 510548 . G A 2177 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=32.49;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2210,187,0 chrX 510695 . C T 2123 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.90;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2156,187,0 chrX 510746 . C T 1502 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=31.96;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1535,129,0 chrX 510812 . G A 1910 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=32.93;SB=-8.930e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1943,162,0 chrX 510871 . G A 1969 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=30.77;SB=-9.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2002,168,0 chrX 510914 . G A 1660 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=31.32;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1693,141,0 chrX 511245 . T C 1749 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.21;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1782,153,0 chrX 511262 . C G 1980 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.46;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2013,174,0 chrX 511432 . C T 2334 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.7477;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=31.12;SB=-1.097e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2367,202,0 chrX 511529 . C T 2673 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=32.20;SB=-1.242e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2706,232,0 chrX 511654 . T C 1804 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.58;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1837,153,0 chrX 511908 . G A 20.80 LowQual;filter AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=0.28;SB=-7.598e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:6:52,6,0 chrX 511909 . A G 13.94 LowQual;filter AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=0.18;SB=-7.858e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:6:45,6,0 chrX 511944 . G T 2345 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=31.69;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2378,196,0 chrX 511949 . C T 2383 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=32.20;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2416,205,0 chrX 513764 . A G 2609 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=31.82;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2642,229,0 chrX 513807 . T C 2840 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=32.27;SB=-1.255e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2873,247,0 chrX 513858 . T C 1669 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=31.49;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1702,144,0 chrX 513874 . A G 1645 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=33.57;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1678,147,0 chrX 514236 . A G 1695 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.98;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1728,153,0 chrX 514320 . A G 878 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.36;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:78:911,78,0 chrX 514422 . T C 1376 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=31.27;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1409,123,0 chrX 514465 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=34.46;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1756,147,0 chrX 514783 . A T 1640 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.54;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1673,138,0 chrX 514837 . T C 1561 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=31.86;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1594,138,0 chrX 514978 . T C 1468 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.23;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1501,129,0 chrX 515263 . C T 1433 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.33;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1466,123,0 chrX 515338 . T C 1617 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.40;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1650,144,0 chrX 515351 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1785,156,0 chrX 515450 . C T 2153 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=32.62;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2186,184,0 chrX 515495 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.87;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2038,172,0 chrX 516190 . C T 1393 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.083;DP=48;Dels=0.00;FS=3.195;HaplotypeScore=2.8140;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;MQRankSum=-1.299;QD=29.02;ReadPosRankSum=1.227;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:95:1426,95,0 chrX 516370 . T G 2398 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=32.85;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2431,211,0 chrX 516436 . G A 1765 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.354;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;MQRankSum=1.417;QD=32.09;ReadPosRankSum=-1.732;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1798,122,0 chrX 516605 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=30.20;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1392,123,0 chrX 516609 . C G 1317 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=31.36;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1350,120,0 chrX 516694 . A G 1622 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=28.96;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1655,141,0 chrX 516695 . A G 1646 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.83;MQ0=0;QD=29.93;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1679,144,0 chrX 516707 . C T 1863 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=32.12;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1896,162,0 chrX 516831 . C T 1152 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.00;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1185,99,0 chrX 516847 . T C 1164 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.26;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1197,102,0 chrX 517094 . A G 1985 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=33.08;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2018,175,0 chrX 517244 . G C 1941 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.31;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1974,169,0 chrX 517494 . T G 1800 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=32.14;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1833,156,0 chrX 517501 . C T 1762 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=33.25;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1795,150,0 chrX 517900 . T C 2014 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;MQRankSum=-0.560;QD=30.98;ReadPosRankSum=0.506;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:2047,178,0 chrX 517926 . G C 1794 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=31.47;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1827,156,0 chrX 518283 . A T 1534 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=28.94;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1567,129,0 chrX 518442 . G C 1769 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=30.50;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1802,159,0 chrX 518451 . C T 1882 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.06;MQ0=0;QD=30.35;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1915,165,0 chrX 518465 . A G 1630 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.65;MQ0=0;QD=29.11;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1663,147,0 chrX 518469 . C T 1607 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=27.24;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1640,144,0 chrX 518494 . G C 899 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.68;MQ0=0;QD=23.05;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:81:932,81,0 chrX 518528 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.90;MQ0=0;QD=25.02;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:90:1059,90,0 chrX 518612 . G A 1951 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=33.07;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1984,171,0 chrX 518647 . G T 1842 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=32.32;SB=-1.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1875,159,0 chrX 518721 . C T 2069 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=32.84;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2102,181,0 chrX 519657 . G A 1524 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=33.13;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1557,132,0 chrX 520853 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=30.72;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1477,126,0 chrX 520988 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=30.85;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1452,126,0 chrX 521093 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=30.23;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2149,181,0 chrX 521350 . G T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883;DP=29;Dels=0.00;FS=51.066;HaplotypeScore=3.6264;MLEAC=1;MLEAF=0.500;MQ=55.90;MQ0=0;MQRankSum=0.226;QD=2.97;ReadPosRankSum=-3.640;SB=1.45 GT:AD:DP:GQ:PL 0/1:17,12:29:99:116,0,463 chrX 521432 . G A 1596 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=31.92;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1629,138,0 chrX 521645 . T G 1949 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.44;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1982,171,0 chrX 522284 . T C 1458 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.91;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1491,126,0 chrX 522481 . C G 2013 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=28.76;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2046,178,0 chrX 522484 . C T 2040 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.04;MQ0=0;QD=30.45;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2073,177,0 chrX 522503 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.81;MQ0=0;QD=31.77;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1272,108,0 chrX 522608 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.02;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1739,153,0 chrX 522848 . T C 1656 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=31.85;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1689,147,0 chrX 523142 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=31.03;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1833,153,0 chrX 523349 . G A 2256 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.67;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2289,193,0 chrX 523373 . C T 1919 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=33.09;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1952,162,0 chrX 523867 . T G 762 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=25.40;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:69:795,69,0 chrX 524113 . T G 1417 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=27.78;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1450,126,0 chrX 524213 . T C 2500 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=2.1554;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=29.76;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2533,220,0 chrX 524254 . A C 2365 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.40;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2398,208,0 chrX 524341 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=33.14;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2187,187,0 chrX 524370 . T C 1627 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=31.29;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1660,144,0 chrX 524384 . T C 1698 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.92;MQ0=0;QD=30.87;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1731,150,0 chrX 524404 . G A 1741 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=30.54;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1774,150,0 chrX 524412 . C T 1745 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.18;MQ0=0;MQRankSum=-0.635;QD=29.08;ReadPosRankSum=1.039;SB=-8.410e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1778,153,0 chrX 524435 . C T 1568 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.93;MQ0=0;QD=29.04;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1601,135,0 chrX 524483 . G T 1245 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=31.12;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:1278,105,0 chrX 524618 . G A 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;MQRankSum=0.781;QD=30.65;ReadPosRankSum=-0.102;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1596,103,0 chrX 524703 . C A 1211 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=28.16;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1244,105,0 chrX 524843 . T G 1730 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=33.27;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1763,153,0 chrX 528639 . A T 2926 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.2426;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2959,253,0 chrX 530248 . A C 1696 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.3660;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=31.41;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1729,147,0 chrX 531239 . A C 1728 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=31.42;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1761,153,0 chrX 531775 . T C 2293 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=32.30;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2326,199,0 chrX 532743 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=31.17;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:968,81,0 chrX 532916 . T A 1659 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.30;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1692,144,0 chrX 532931 . A G 1731 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=32.66;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1764,153,0 chrX 533213 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=30.29;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1578,135,0 chrX 533342 . A G 1300 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=32.50;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1333,114,0 chrX 533833 . T C 1518 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=31.62;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1551,135,0 chrX 534212 . G A 2140 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.01;SB=-1.040e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2173,184,0 chrX 534224 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.74;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1966,168,0 chrX 534296 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3479;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=30.82;SB=-3.040e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2036,178,0 chrX 534564 . T C 1744 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1777,153,0 chrX 534599 . C T 1847 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.20;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1880,156,0 chrX 534756 . A G 1309 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=27.85;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1342,117,0 chrX 535430 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.84;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1593,138,0 chrX 535622 . T C 1798 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=33.30;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1831,156,0 chrX 535682 . G A 2112 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.52;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2145,184,0 chrX 535766 . T C 2178 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=32.03;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2211,190,0 chrX 535873 . C T 1468 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.62;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1501,126,0 chrX 535930 . G C 1797 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=32.67;SB=-9.260e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1830,159,0 chrX 536229 . A G 1719 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=30.16;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1752,153,0 chrX 536262 . C T 2521 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=33.17;SB=-1.337e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2554,217,0 chrX 536283 . T C 2365 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=32.40;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2398,205,0 chrX 536292 . C G 2277 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=32.53;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,69:70:99:2310,199,0 chrX 537428 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=30.91;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1671,141,0 chrX 537677 . G A 1157 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=32.14;SB=-5.200e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1190,102,0 chrX 537860 . C T 1802 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=4.9566;MLEAC=2;MLEAF=1.00;MQ=56.78;MQ0=0;QD=32.18;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1835,156,0 chrX 538035 . C A 2275 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.82;MQ0=0;QD=33.96;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2308,196,0 chrX 538049 . C T 2414 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.65;MQ0=0;QD=34.00;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2447,211,0 chrX 538083 . T A 1578 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=30.94;SB=-1.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1611,141,0 chrX 538523 . T C 989 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=29.97;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:1022,90,0 chrX 538627 . T C 837 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=23.1962;MLEAC=2;MLEAF=1.00;MQ=42.11;MQ0=0;QD=27.00;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:870,78,0 chrX 538651 . C A 40.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.5555;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=1.28;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,31:32:9:73,9,0 chrX 538652 . T C 12.99 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.5555;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=0.41;SB=-4.298e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:6:44,6,0 chrX 538653 . T C 38.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=3.5555;MLEAC=2;MLEAF=1.00;MQ=36.53;MQ0=0;QD=1.22;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:9:71,9,0 chrX 538656 . T C 738 SnpCluster AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=3.5555;MLEAC=2;MLEAF=1.00;MQ=37.46;MQ0=0;QD=22.36;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:72:771,72,0 chrX 538746 . T A 2278 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.9454;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=31.64;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,71:72:99:2311,196,0 chrX 538984 . T G 1790 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.35;MQ0=0;QD=30.86;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1823,159,0 chrX 539053 . A G 1084 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.12;MQ0=0;QD=24.64;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1117,99,0 chrX 539105 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=54.21;MQ0=0;QD=31.00;SB=-1.098e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2079,181,0 chrX 539146 . A G 1953 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.47;MQ0=0;QD=32.02;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,60:61:99:1986,171,0 chrX 539272 . A G 2519 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=32.29;SB=-1.092e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2552,220,0 chrX 539275 . G A 2563 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=32.86;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2596,220,0 chrX 539286 . G A 2123 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=32.66;SB=-1.121e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2156,181,0 chrX 539486 . A T 612 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=81.1867;MLEAC=2;MLEAF=1.00;MQ=32.66;MQ0=0;QD=27.82;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:63:645,63,0 chrX 539524 . T G 575 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.70;MQ0=0;QD=25.00;SB=-1.720e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:608,54,0 chrX 539612 . T A 2336 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=31.15;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2369,202,0 chrX 539626 . A G 2382 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=29.05;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2415,211,0 chrX 539652 . A G 1874 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.17;MQ0=0;QD=34.07;SB=-9.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1907,162,0 chrX 539660 . A T 1740 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.19;MQ0=0;QD=34.80;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1773,150,0 chrX 539780 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=33.36;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1701,144,0 chrX 540015 . C A 1359 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=33.15;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1392,117,0 chrX 540022 . C G 1296 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=32.40;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1329,114,0 chrX 540077 . T C 1421 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=33.05;SB=-4.490e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1454,123,0 chrX 540297 . T A 1419 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.53;MQ0=0;QD=31.53;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1452,123,0 chrX 540433 . A G 1391 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=32.35;SB=-4.760e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1424,123,0 chrX 540591 . T A 1225 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=30.62;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1258,108,0 chrX 540703 . C T 1342 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.98;MQ0=0;QD=31.21;SB=-3.400e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1375,117,0 chrX 540773 . A T 1662 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.974;DP=54;Dels=0.00;FS=2.348;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.30;MQ0=0;MQRankSum=1.470;QD=30.78;ReadPosRankSum=3.022;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:4,50:54:99:1695,144,0 chrX 540782 . A G 1562 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.589;DP=53;Dels=0.00;FS=2.458;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.59;MQ0=0;MQRankSum=1.970;QD=29.47;ReadPosRankSum=2.610;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:4,49:53:99:1595,138,0 chrX 540790 . G C 1542 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.96;MQ0=0;QD=30.84;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,46:50:99:1575,135,0 chrX 540805 . G T 1229 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=29.98;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1262,108,0 chrX 540972 . A T 1279 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.18;MQ0=0;QD=26.65;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1312,111,0 chrX 541000 . C T 1501 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.17;MQ0=0;QD=31.94;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1534,132,0 chrX 541067 . C A 1051 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.99;MQ0=0;QD=24.44;SB=-1.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:96:1084,96,0 chrX 541083 . T C 46.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.936;DP=39;Dels=0.00;FS=2.417;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.56;MQ0=0;MQRankSum=-2.084;QD=1.18;ReadPosRankSum=-4.793;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:27,12:39:76:76,0,754 chrX 541095 . T C 631 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.18;MQ0=0;QD=30.05;SB=-3.201e+01 GT:AD:DP:GQ:PL 1/1:0,21:21:60:664,60,0 chrX 541613 . A T 1207 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.23;MQ0=0;QD=30.17;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1240,108,0 chrX 541712 . A T 1658 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.256;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=8.3311;MLEAC=2;MLEAF=1.00;MQ=52.50;MQ0=0;MQRankSum=1.771;QD=32.51;ReadPosRankSum=1.771;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1691,144,0 chrX 542113 . G A 1102 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=33.39;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1135,96,0 chrX 542131 . C T 1064 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=31.29;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:1097,93,0 chrX 542293 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=31.51;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2207,187,0 chrX 542308 . A G 2244 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=29.53;SB=-1.261e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2277,199,0 chrX 542620 . G A 1813 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=33.57;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1846,156,0 chrX 542637 . G A 1476 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=33.55;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1509,129,0 chrX 542771 . G A 2206 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=32.44;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2239,187,0 chrX 543047 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.15;MQ0=0;QD=29.72;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1311,114,0 chrX 543064 . G A 1301 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=28.91;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1334,111,0 chrX 543075 . A G 1615 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=31.06;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1648,144,0 chrX 543104 . T C 1634 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=30.26;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1667,141,0 chrX 543140 . G A 1827 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=32.62;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1860,156,0 chrX 543250 . T G 1754 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=33.09;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1787,156,0 chrX 543266 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=34.16;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1775,150,0 chrX 543721 . A G 419 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.37;MQ0=0;QD=14.45;SB=-7.613e-03 GT:AD:DP:GQ:PL 1/1:0,29:29:39:452,39,0 chrX 543776 . T C 1024 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.38;SB=-3.030e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:90:1057,90,0 chrX 544103 . T C 2201 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=29.74;SB=-1.031e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2234,193,0 chrX 544322 . C G 1725 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=30.80;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1758,153,0 chrX 544484 . C T 1355 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=32.26;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1388,120,0 chrX 544523 . T C 1217 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=28.98;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1250,108,0 chrX 544624 . G A 1544 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=27.09;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1577,135,0 chrX 545038 . A G 1689 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.71;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1722,150,0 chrX 545053 . G A 1688 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=33.76;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1721,144,0 chrX 545209 . T C 1360 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=30.91;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1393,117,0 chrX 545233 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=29.76;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1372,117,0 chrX 545239 . C A 1390 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.31;MQ0=0;QD=30.89;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1423,123,0 chrX 545249 . A G 1258 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=29.26;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1291,114,0 chrX 545773 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=32.62;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1403,117,0 chrX 545817 . G C 1293 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.54;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1326,117,0 chrX 546078 . T C 1413 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=30.06;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1446,123,0 chrX 546103 . T C 1187 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.60;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1220,102,0 chrX 546305 . T C 1763 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.1780;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=29.88;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1796,153,0 chrX 546527 . T C 1841 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=31.20;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1874,165,0 chrX 546530 . A G 1837 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.673;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=-1.314;QD=31.14;ReadPosRankSum=0.896;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:1,57:59:99:1870,143,0 chrX 546704 . C T 1741 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=33.48;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1774,150,0 chrX 546734 . T C 2190 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.69;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2223,190,0 chrX 546746 . T A 2236 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.37;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2269,190,0 chrX 546803 . T C 1816 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=32.43;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1849,156,0 chrX 546863 . C T 1634 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=31.42;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1667,141,0 chrX 546884 . T C 1181 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=28.80;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1214,105,0 chrX 547067 . C T 2402 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.36;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2435,205,0 chrX 547082 . C G 2261 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.55;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2294,199,0 chrX 547200 . C T 1896 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6175;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=32.14;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1929,162,0 chrX 547229 . C T 1655 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=2.5220;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.04;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1688,141,0 chrX 547598 . C A 1809 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=32.89;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1842,156,0 chrX 547730 . C T 1523 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=30.46;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1556,132,0 chrX 547820 . C A 1370 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.78;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1403,120,0 chrX 548012 . G A 1794 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=32.62;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1827,153,0 chrX 548432 . A G 2654 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.03;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2687,235,0 chrX 548463 . G A 2473 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.83;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2506,211,0 chrX 548571 . T C 1607 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.881;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.395;QD=28.19;ReadPosRankSum=-1.732;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1640,115,0 chrX 548667 . A T 2056 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=34.27;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2089,175,0 chrX 548670 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=33.18;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1924,165,0 chrX 548743 . T C 1702 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.73;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1735,150,0 chrX 549188 . G T 1592 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.62;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1625,135,0 chrX 549542 . T C 1086 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=31.94;SB=-3.100e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1119,96,0 chrX 551502 . T C 1415 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=30.11;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1448,126,0 chrX 552134 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=32.30;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1745,147,0 chrX 552241 . A G 2311 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=8.3747;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=28.89;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2344,205,0 chrX 552529 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.4398;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.08;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1637,141,0 chrX 552584 . A T 1962 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=33.83;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1995,168,0 chrX 553500 . C T 1664 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=32.63;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1697,141,0 chrX 553547 . A G 1832 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=30.03;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1865,159,0 chrX 553578 . A G 2168 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=30.97;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2201,190,0 chrX 553911 . G T 1649 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.98;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1682,144,0 chrX 553912 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.58;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1662,141,0 chrX 554391 . C T 1575 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.17;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1608,135,0 chrX 554464 . T C 1652 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=30.04;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1685,144,0 chrX 554517 . A T 1936 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.74;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1969,165,0 chrX 554957 . C T 2114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.022;DP=78;Dels=0.00;FS=5.304;HaplotypeScore=2.7313;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;MQRankSum=1.599;QD=27.10;ReadPosRankSum=1.066;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,77:78:99:2147,181,0 chrX 554999 . C T 1910 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=32.93;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1943,162,0 chrX 555162 . G A 1295 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.83;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1328,111,0 chrX 555335 . C T 1318 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=29.95;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1351,111,0 chrX 556366 . T C 1862 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.65;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1895,165,0 chrX 557590 . A G 1073 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.81;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1106,96,0 chrX 557799 . G A 1697 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=30.30;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1730,147,0 chrX 558226 . T C 2090 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=32.66;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2123,181,0 chrX 558314 . T C 1461 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=28.65;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1494,129,0 chrX 558922 . C T 1846 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.611;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.6634;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=1.550;QD=31.83;ReadPosRankSum=-0.517;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:1,56:58:99:1879,135,0 chrX 560037 . T C 1636 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.70;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1669,144,0 chrX 560603 . T G 2085 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=30.66;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:2118,181,0 chrX 561055 . A G 1352 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=30.04;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1385,120,0 chrX 561161 . G A 1201 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=30.79;SB=-1.740e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1234,105,0 chrX 561341 . G A 1956 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.60;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1989,166,0 chrX 561439 . C T 1792 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.19;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1825,153,0 chrX 563290 . G A 1954 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.52;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1987,169,0 chrX 564183 . G A 1369 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=31.11;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1402,120,0 chrX 564269 . G A 1718 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=30.14;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1751,147,0 chrX 564290 . T C 1774 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=30.07;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1807,156,0 chrX 564333 . T G 1494 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=28.73;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1527,132,0 chrX 564368 . A C 2040 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=30.91;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2073,178,0 chrX 564566 . G A 1880 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.57;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1913,162,0 chrX 564626 . T C 1404 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=31.20;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1437,126,0 chrX 566519 . T C 1293 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.11;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1326,114,0 chrX 566594 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.09;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1494,126,0 chrX 566600 . G C 1434 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.87;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1467,129,0 chrX 566656 . A G 2018 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.55;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2051,175,0 chrX 567062 . G A 1715 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=32.98;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1748,147,0 chrX 567157 . T C 1489 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.68;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1522,132,0 chrX 567287 . T C 1077 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=30.77;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1110,96,0 chrX 567298 . C T 1124 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=34.06;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1157,96,0 chrX 567462 . A G 2262 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=33.26;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2295,202,0 chrX 567525 . A G 2002 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=33.37;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2035,174,0 chrX 569903 . G A 1807 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.038;DP=60;Dels=0.00;FS=5.534;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.062;QD=30.12;ReadPosRankSum=0.638;SB=-2.480e+02 GT:AD:DP:GQ:PL 1/1:2,58:60:99:1840,118,0 chrX 570422 . T C 1278 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=28.40;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1311,111,0 chrX 570512 . G A 1957 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.33;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1990,169,0 chrX 570648 . C G 1683 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.1709;MLEAC=2;MLEAF=1.00;MQ=60.29;MQ0=0;QD=25.89;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1716,147,0 chrX 570721 . T C 2352 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=60.43;MQ0=0;QD=32.22;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2385,208,0 chrX 570822 . A G 1203 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.95;MQ0=0;QD=27.34;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1236,105,0 chrX 571066 . A G 2398 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=30.35;SB=-1.320e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2431,208,0 chrX 571276 . T C 1752 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.29;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1785,153,0 chrX 571651 . G A 2661 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=31.68;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2694,229,0 chrX 571854 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=31.33;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1725,147,0 chrX 571909 . G A 1857 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=33.16;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1890,159,0 chrX 572041 . C T 2473 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SB=-1.229e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2506,214,0 chrX 572117 . A G 1695 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.60;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1728,150,0 chrX 572450 . G C 1230 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.54;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1263,108,0 chrX 572675 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.25;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1814,156,0 chrX 580265 . G T 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528;DP=61;Dels=0.00;FS=92.181;HaplotypeScore=4.9281;MLEAC=1;MLEAF=0.500;MQ=58.16;MQ0=0;MQRankSum=0.333;QD=0.20;ReadPosRankSum=-2.033;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:49,12:61:42:42,0,846 chrX 639220 . G T 50.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.861;DP=57;Dels=0.00;FS=114.193;HaplotypeScore=6.9047;MLEAC=1;MLEAF=0.500;MQ=57.87;MQ0=1;MQRankSum=1.166;QD=0.88;ReadPosRankSum=-4.631;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:37,18:57:80:80,0,249 chrX 714763 . T G 237.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.465;DP=57;Dels=0.00;FS=89.440;HaplotypeScore=1.1567;MLEAC=1;MLEAF=0.500;MQ=45.04;MQ0=0;MQRankSum=-0.816;QD=4.16;ReadPosRankSum=-2.821;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,24:57:99:267,0,976 chrX 715050 . G A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.194;DP=62;Dels=0.00;FS=9.083;HaplotypeScore=1.9953;MLEAC=1;MLEAF=0.500;MQ=46.18;MQ0=0;MQRankSum=-3.559;QD=0.29;ReadPosRankSum=0.409;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,8:62:48:48,0,1622 chrX 715054 . G T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.596;DP=61;Dels=0.00;FS=11.619;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=45.83;MQ0=0;MQRankSum=-3.752;QD=0.33;ReadPosRankSum=0.681;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,9:61:50:50,0,1512 chrX 715068 . G A 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DP=61;Dels=0.00;FS=12.298;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=44.06;MQ0=0;MQRankSum=-1.895;QD=2.16;ReadPosRankSum=0.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,14:61:99:162,0,1388 chrX 715072 . G T 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.622;DP=60;Dels=0.00;FS=14.560;HaplotypeScore=4.9953;MLEAC=1;MLEAF=0.500;MQ=43.78;MQ0=0;MQRankSum=-1.912;QD=2.13;ReadPosRankSum=0.734;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,15:60:99:158,0,1284 chrX 715081 . T G 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.392;DP=57;Dels=0.00;FS=14.416;HaplotypeScore=3.9963;MLEAC=1;MLEAF=0.500;MQ=41.16;MQ0=1;MQRankSum=-2.372;QD=2.44;ReadPosRankSum=1.670;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,12:57:99:169,0,1102 chrX 715087 . A G 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.815;DP=59;Dels=0.00;FS=14.101;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.49;MQ0=3;MQRankSum=-2.083;QD=2.46;ReadPosRankSum=0.598;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,14:59:99:175,0,1083 chrX 715095 . G A 945.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.281;DP=59;Dels=0.00;FS=13.728;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.52;MQ0=3;MQRankSum=2.387;QD=16.02;ReadPosRankSum=0.718;SB=-5.490e+02 GT:AD:DP:GQ:PL 0/1:16,43:59:99:975,0,213 chrX 715099 . G T 856.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.999;DP=60;Dels=0.00;FS=10.882;HaplotypeScore=0.9992;MLEAC=1;MLEAF=0.500;MQ=38.74;MQ0=4;MQRankSum=3.144;QD=14.27;ReadPosRankSum=0.427;SB=-5.630e+02 GT:AD:DP:GQ:PL 0/1:17,43:60:99:886,0,190 chrX 715108 . A T 782.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DP=65;Dels=0.00;FS=9.651;HaplotypeScore=1.9983;MLEAC=1;MLEAF=0.500;MQ=37.48;MQ0=6;MQRankSum=3.409;QD=12.03;ReadPosRankSum=0.497;SB=-5.430e+02 GT:AD:DP:GQ:PL 0/1:21,43:65:99:812,0,229 chrX 715114 . G A 721.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254;DP=68;Dels=0.00;FS=9.416;HaplotypeScore=32.8939;MLEAC=1;MLEAF=0.500;MQ=39.94;MQ0=7;MQRankSum=3.173;QD=10.60;ReadPosRankSum=0.353;SB=-5.280e+02 GT:AD:DP:GQ:PL 0/1:23,45:68:99:751,0,266 chrX 715122 . G A 667.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.308;DP=76;Dels=0.00;FS=5.921;HaplotypeScore=295.7515;MLEAC=1;MLEAF=0.500;MQ=36.82;MQ0=11;MQRankSum=4.524;QD=8.78;ReadPosRankSum=2.350;SB=-4.860e+02 GT:AD:DP:GQ:PL 0/1:32,44:76:99:697,0,275 chrX 715141 . A G 796.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.084;DP=75;Dels=0.00;FS=5.820;HaplotypeScore=85.8881;MLEAC=1;MLEAF=0.500;MQ=33.54;MQ0=16;MQRankSum=2.533;QD=10.61;ReadPosRankSum=2.792;SB=-3.110e+02 GT:AD:DP:GQ:PL 0/1:42,33:75:45:826,0,45 chrX 740238 . T C 35.77 filter AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.73;MQ0=12;QD=2.10;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:0,17:17:6:67,6,0 chrX 745387 . G A 421.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.436;DP=56;Dels=0.00;FS=6.253;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=38.56;MQ0=6;MQRankSum=-0.465;QD=7.52;ReadPosRankSum=0.287;SB=-8.801e+01 GT:AD:DP:GQ:PL 0/1:35,21:56:99:451,0,689 chrXI 67798 . G T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.363;DP=61;Dels=0.00;FS=126.443;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.85;MQ0=0;MQRankSum=-0.946;QD=0.43;ReadPosRankSum=-5.686;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:46,15:61:56:56,0,257 chrXI 68015 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.42;MQ0=0;QD=36.67;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1243,96,0 chrXI 217124 . G A 77.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.539;DP=63;Dels=0.00;FS=80.630;HaplotypeScore=3.3652;MLEAC=1;MLEAF=0.500;MQ=59.34;MQ0=0;MQRankSum=-0.307;QD=1.22;ReadPosRankSum=-4.721;SB=0.011 GT:AD:DP:GQ:PL 0/1:51,11:63:99:107,0,347 chrXI 277055 . G T 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.441;DP=39;Dels=0.00;FS=37.017;HaplotypeScore=2.7574;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.680;QD=0.36;ReadPosRankSum=-1.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,7:39:44:44,0,668 chrXI 323019 . A T 2252 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=36.32;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2285,172,0 chrXI 385128 . G T 116.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801;DP=58;Dels=0.00;FS=161.771;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=1.141;QD=2.00;ReadPosRankSum=-6.489;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:28,30:58:83:146,0,83 chrXI 385129 . A T 90.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.711;DP=56;Dels=0.00;FS=155.826;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=0.516;QD=1.61;ReadPosRankSum=-6.432;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:28,28:56:90:120,0,90 chrXI 385133 . C T 136.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.170;DP=51;Dels=0.00;FS=124.858;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.63;MQ0=0;MQRankSum=0.865;QD=2.67;ReadPosRankSum=-5.582;SB=-3.010e+00 GT:AD:DP:GQ:PL 0/1:30,21:51:99:166,0,117 chrXI 410627 . C T 2259 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=34.23;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2292,172,0 chrXI 424134 . G T 2526 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=38.86;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2559,196,0 chrXI 427613 . C T 1931 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.86;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1964,153,0 chrXI 524066 . A T 93.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.127;DP=64;Dels=0.02;FS=72.399;HaplotypeScore=26.4772;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-0.998;QD=1.45;ReadPosRankSum=-3.716;SB=0.406 GT:AD:DP:GQ:PL 0/1:48,15:63:99:123,0,226 chrXI 638438 . C T 90.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.489;DP=78;Dels=0.03;FS=42.763;HaplotypeScore=9.4060;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=0.303;QD=1.15;ReadPosRankSum=-5.312;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,23:76:99:120,0,803 chrXI 659549 . C T 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DP=57;Dels=0.00;FS=12.147;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.60;MQ0=9;MQRankSum=-3.917;QD=2.91;ReadPosRankSum=-0.560;SB=-7.101e+01 GT:AD:DP:GQ:PL 0/1:36,21:57:99:196,0,1092 chrXI 659823 . G T 1210.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DP=90;Dels=0.00;FS=0.807;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=35.63;MQ0=1;MQRankSum=-1.650;QD=13.44;ReadPosRankSum=-1.162;SB=-6.510e+02 GT:AD:DP:GQ:PL 0/1:39,51:90:99:1240,0,1011 chrXI 660406 . G A 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.151;DP=55;Dels=0.00;FS=8.090;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=49.25;MQ0=3;MQRankSum=-3.285;QD=1.53;ReadPosRankSum=-2.960;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,13:55:99:114,0,1386 chrXI 661167 . C T 852.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672;DP=80;Dels=0.00;FS=1.343;HaplotypeScore=2.7478;MLEAC=1;MLEAF=0.500;MQ=47.81;MQ0=1;MQRankSum=-3.894;QD=10.65;ReadPosRankSum=3.894;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:49,31:80:99:882,0,1565 chrXI 661199 . A G 857.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.993;DP=78;Dels=0.00;FS=4.583;HaplotypeScore=0.9989;MLEAC=1;MLEAF=0.500;MQ=48.50;MQ0=1;MQRankSum=-5.249;QD=10.99;ReadPosRankSum=-1.468;SB=-8.101e+01 GT:AD:DP:GQ:PL 0/1:47,31:78:99:887,0,1460 chrXI 661229 . A G 474.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174;DP=87;Dels=0.00;FS=20.311;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=51.49;MQ0=0;MQRankSum=-5.886;QD=5.45;ReadPosRankSum=-3.526;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,20:87:99:504,0,2055 chrXI 662659 . A G 248.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.315;DP=57;Dels=0.00;FS=13.901;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=25.27;MQ0=15;MQRankSum=1.144;QD=4.35;ReadPosRankSum=-0.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,18:57:99:278,0,661 chrXI 662743 . T C 813.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=38.29;MQ0=6;MQRankSum=-0.198;QD=9.13;ReadPosRankSum=1.190;SB=-2.440e+02 GT:AD:DP:GQ:PL 0/1:48,41:89:99:843,0,1070 chrXI 662838 . C T 274.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=66;Dels=0.00;FS=5.685;HaplotypeScore=1.8675;MLEAC=1;MLEAF=0.500;MQ=43.34;MQ0=4;MQRankSum=-2.507;QD=4.15;ReadPosRankSum=-0.248;SB=-9.101e+01 GT:AD:DP:GQ:PL 0/1:42,24:66:99:304,0,1284 chrXI 662872 . T C 137.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.751;DP=61;Dels=0.00;FS=2.599;HaplotypeScore=3.6307;MLEAC=1;MLEAF=0.500;MQ=44.82;MQ0=4;MQRankSum=-4.922;QD=2.25;ReadPosRankSum=0.158;SB=-1.060e+02 GT:AD:DP:GQ:PL 0/1:43,18:61:99:167,0,1497 chrXI 662875 . G A 185.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.166;DP=66;Dels=0.00;FS=1.125;HaplotypeScore=4.5973;MLEAC=1;MLEAF=0.500;MQ=43.43;MQ0=3;MQRankSum=-4.682;QD=2.80;ReadPosRankSum=0.039;SB=-1.460e+02 GT:AD:DP:GQ:PL 0/1:47,19:66:99:215,0,1541 chrXI 662887 . A G 152.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=42.83;MQ0=2;MQRankSum=-3.369;QD=2.76;ReadPosRankSum=0.372;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:42,13:55:99:182,0,1327 chrXI 663021 . G A 161.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.242;DP=67;Dels=0.00;FS=3.662;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.91;MQ0=7;MQRankSum=-2.216;QD=2.40;ReadPosRankSum=-0.535;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,17:67:99:191,0,1363 chrXI 663226 . T C 249.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.738;DP=57;Dels=0.00;FS=1.380;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.99;MQ0=7;MQRankSum=-1.986;QD=4.37;ReadPosRankSum=0.655;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:39,18:57:99:279,0,1012 chrXI 663255 . G A 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.241;DP=47;Dels=0.00;FS=1.456;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=34.78;MQ0=7;MQRankSum=-2.935;QD=2.81;ReadPosRankSum=-1.063;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:31,16:47:99:162,0,799 chrXI 663269 . A G 99.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;DP=31;Dels=0.00;FS=3.654;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.56;MQ0=2;MQRankSum=-2.134;QD=3.19;ReadPosRankSum=-1.445;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:21,10:31:99:129,0,591 chrXI 663275 . A G 73.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.252;DP=30;Dels=0.00;FS=3.654;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.21;MQ0=1;MQRankSum=-2.088;QD=2.43;ReadPosRankSum=-0.986;SB=-4.301e+01 GT:AD:DP:GQ:PL 0/1:20,10:30:99:103,0,599 chrXI 663293 . C T 72.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.142;DP=25;Dels=0.00;FS=4.500;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.91;MQ0=0;MQRankSum=-2.463;QD=2.88;ReadPosRankSum=-0.085;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:16,9:25:99:102,0,519 chrXI 663359 . A G 598.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.539;DP=71;Dels=0.00;FS=6.169;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.32;MQ0=2;MQRankSum=-3.696;QD=8.42;ReadPosRankSum=0.675;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:43,28:71:99:628,0,1275 chrXI 663366 . C T 713.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.549;DP=75;Dels=0.00;FS=3.361;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=46.63;MQ0=3;MQRankSum=-3.835;QD=9.51;ReadPosRankSum=0.057;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:43,32:75:99:743,0,1201 chrXI 663380 . C T 730.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.225;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.98;MQ0=3;MQRankSum=-3.777;QD=9.73;ReadPosRankSum=0.884;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:43,32:75:99:760,0,1184 chrXI 663442 . G T 571.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.451;DP=86;Dels=0.00;FS=3.385;HaplotypeScore=2.6175;MLEAC=1;MLEAF=0.500;MQ=48.06;MQ0=4;MQRankSum=-4.006;QD=6.64;ReadPosRankSum=-0.194;SB=-2.910e+02 GT:AD:DP:GQ:PL 0/1:58,27:86:99:601,0,1855 chrXI 663509 . C A 79.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=77;Dels=0.00;FS=2.351;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.93;MQ0=0;MQRankSum=-4.808;QD=1.03;ReadPosRankSum=-2.485;SB=-9.401e+01 GT:AD:DP:GQ:PL 0/1:59,18:77:99:109,0,1956 chrXI 663514 . C T 183.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;DP=73;Dels=0.00;FS=5.505;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.79;MQ0=0;MQRankSum=-4.570;QD=2.51;ReadPosRankSum=-3.581;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:53,20:73:99:213,0,1723 chrXI 663576 . T A 557.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.402;DP=76;Dels=0.00;FS=12.428;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=47.94;MQ0=0;MQRankSum=-3.530;QD=7.33;ReadPosRankSum=4.397;SB=-1.670e+02 GT:AD:DP:GQ:PL 0/1:45,31:76:99:587,0,1493 chrXI 663733 . A G 270.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295;DP=63;Dels=0.00;FS=2.123;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=44.69;MQ0=0;MQRankSum=-3.531;QD=4.29;ReadPosRankSum=2.243;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:39,24:63:99:300,0,1165 chrXI 663749 . T C 273.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.873;DP=67;Dels=0.00;FS=0.969;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.24;MQ0=0;MQRankSum=-3.623;QD=4.07;ReadPosRankSum=1.899;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:42,25:67:99:303,0,1221 chrXI 663759 . T C 253.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=3.7861;MLEAC=1;MLEAF=0.500;MQ=39.82;MQ0=2;MQRankSum=-3.164;QD=3.29;ReadPosRankSum=1.916;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:50,27:77:99:283,0,1481 chrXI 663830 . G A 362.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.130;DP=82;Dels=0.00;FS=19.614;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=29.05;MQ0=11;MQRankSum=0.786;QD=4.41;ReadPosRankSum=2.095;SB=-2.701e+01 GT:AD:DP:GQ:PL 0/1:57,25:82:99:392,0,1590 chrXI 663906 . A G 340.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055;DP=51;Dels=0.00;FS=1.206;HaplotypeScore=2.5149;MLEAC=1;MLEAF=0.500;MQ=27.60;MQ0=6;MQRankSum=0.368;QD=6.67;ReadPosRankSum=0.415;SB=-1.330e+02 GT:AD:DP:GQ:PL 0/1:31,20:51:99:370,0,725 chrXI 664111 . G A 889.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464;DP=67;Dels=0.00;FS=3.365;HaplotypeScore=2.2859;MLEAC=1;MLEAF=0.500;MQ=49.99;MQ0=3;MQRankSum=-2.324;QD=13.27;ReadPosRankSum=-1.693;SB=-3.530e+02 GT:AD:DP:GQ:PL 0/1:33,34:67:99:919,0,920 chrXI 664144 . C T 576.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.676;DP=62;Dels=0.00;FS=15.516;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.74;MQ0=6;MQRankSum=-1.171;QD=9.29;ReadPosRankSum=2.146;SB=-1.710e+02 GT:AD:DP:GQ:PL 0/1:36,26:62:99:606,0,1039 chrXI 664233 . C T 685.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.668;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.72;MQ0=5;MQRankSum=-3.510;QD=8.78;ReadPosRankSum=1.512;SB=-3.170e+02 GT:AD:DP:GQ:PL 0/1:42,36:78:99:715,0,1359 chrXI 664262 . T C 1252.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207;DP=95;Dels=0.00;FS=6.808;HaplotypeScore=4.2674;MLEAC=1;MLEAF=0.500;MQ=44.39;MQ0=2;MQRankSum=-4.069;QD=13.18;ReadPosRankSum=-0.786;SB=-3.740e+02 GT:AD:DP:GQ:PL 0/1:41,53:95:99:1282,0,1274 chrXI 664278 . A G 1330.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364;DP=99;Dels=0.00;FS=6.684;HaplotypeScore=0.7340;MLEAC=1;MLEAF=0.500;MQ=44.96;MQ0=2;MQRankSum=-4.503;QD=13.43;ReadPosRankSum=0.047;SB=-3.540e+02 GT:AD:DP:GQ:PL 0/1:45,54:99:99:1360,0,1522 chrXI 664299 . A G 1446.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.581;DP=116;Dels=0.00;FS=7.123;HaplotypeScore=0.9958;MLEAC=1;MLEAF=0.500;MQ=44.27;MQ0=0;MQRankSum=-3.926;QD=12.47;ReadPosRankSum=0.849;SB=-4.380e+02 GT:AD:DP:GQ:PL 0/1:54,61:116:99:1476,0,1777 chrXI 664310 . A G 1856.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.629;DP=133;Dels=0.00;FS=4.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.12;MQ0=1;MQRankSum=-4.541;QD=13.95;ReadPosRankSum=-0.080;SB=-6.070e+02 GT:AD:DP:GQ:PL 0/1:58,75:133:99:1886,0,1887 chrXI 664483 . A T 646.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.727;DP=61;Dels=0.00;FS=9.496;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=38.31;MQ0=3;MQRankSum=-1.665;QD=10.59;ReadPosRankSum=-0.571;SB=-2.460e+02 GT:AD:DP:GQ:PL 0/1:32,29:61:99:676,0,880 chrXI 664498 . G A 610.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.408;DP=64;Dels=0.00;FS=3.536;HaplotypeScore=0.9998;MLEAC=1;MLEAF=0.500;MQ=40.75;MQ0=0;MQRankSum=-1.899;QD=9.53;ReadPosRankSum=2.381;SB=-2.620e+02 GT:AD:DP:GQ:PL 0/1:39,25:64:99:640,0,1105 chrXI 664553 . T C 435.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.68;MQ0=8;MQRankSum=-0.259;QD=6.69;ReadPosRankSum=-1.413;SB=-1.800e+02 GT:AD:DP:GQ:PL 0/1:40,25:65:99:465,0,849 chrXI 664611 . T A 663.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.466;DP=74;Dels=0.00;FS=2.201;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.03;MQ0=9;MQRankSum=1.667;QD=8.96;ReadPosRankSum=-0.556;SB=-1.980e+02 GT:AD:DP:GQ:PL 0/1:42,32:74:99:693,0,902 chrXI 664667 . C A 652.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.049;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.68;MQ0=4;MQRankSum=-0.592;QD=12.07;ReadPosRankSum=-1.408;SB=-3.220e+02 GT:AD:DP:GQ:PL 0/1:29,25:54:99:682,0,697 chrXI 664835 . A G 457.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.994;DP=63;Dels=0.00;FS=1.008;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=41.07;MQ0=1;MQRankSum=-2.244;QD=7.25;ReadPosRankSum=0.802;SB=-2.710e+02 GT:AD:DP:GQ:PL 0/1:40,23:63:99:487,0,1227 chrXI 664865 . G T 673.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.298;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.98;MQ0=1;MQRankSum=-3.187;QD=8.41;ReadPosRankSum=-2.490;SB=-2.780e+02 GT:AD:DP:GQ:PL 0/1:49,31:80:99:703,0,1394 chrXI 664901 . C G 337.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=36.00;MQ0=9;MQRankSum=-0.586;QD=5.52;ReadPosRankSum=1.575;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:40,21:61:99:367,0,994 chrXI 665097 . T G 1383.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.148;DP=74;Dels=0.00;FS=7.050;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=45.00;MQ0=0;MQRankSum=-3.554;QD=18.69;ReadPosRankSum=1.672;SB=-1.430e+02 GT:AD:DP:GQ:PL 0/1:29,45:74:99:1413,0,889 chrXI 665116 . C T 1062.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DP=60;Dels=0.00;FS=3.605;HaplotypeScore=1.5770;MLEAC=1;MLEAF=0.500;MQ=43.83;MQ0=0;MQRankSum=-1.919;QD=17.70;ReadPosRankSum=1.859;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:25,35:60:99:1092,0,764 chrXI 665125 . C T 1441.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.982;DP=72;Dels=0.00;FS=6.442;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.11;MQ0=0;MQRankSum=-1.656;QD=20.01;ReadPosRankSum=-1.881;SB=-5.501e+01 GT:AD:DP:GQ:PL 0/1:25,47:72:99:1471,0,756 chrXI 665170 . T C 670.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DP=63;Dels=0.00;FS=9.101;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=47.46;MQ0=0;MQRankSum=-2.535;QD=10.64;ReadPosRankSum=3.688;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,27:63:99:700,0,1262 chrXI 665216 . C T 386.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.763;DP=63;Dels=0.00;FS=22.131;HaplotypeScore=0.9832;MLEAC=1;MLEAF=0.500;MQ=49.59;MQ0=0;MQRankSum=-4.006;QD=6.13;ReadPosRankSum=-3.886;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,19:63:99:416,0,1423 chrXI 666770 . T G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=13;Dels=0.00;FS=8.921;HaplotypeScore=14.3984;MLEAC=1;MLEAF=0.500;MQ=31.56;MQ0=0;MQRankSum=0.533;QD=2.15;ReadPosRankSum=0.000;SB=-6.025e+01 GT:AD:DP:GQ:PL 0/1:8,5:13:58:58,0,116 chrXI 666772 . T G 19.06 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.157;DP=13;Dels=0.00;FS=2.688;HaplotypeScore=14.3304;MLEAC=1;MLEAF=0.500;MQ=31.56;MQ0=0;MQRankSum=0.386;QD=1.47;ReadPosRankSum=0.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:9,4:13:49:49,0,120 chrXII 161 . T C 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DP=56;Dels=0.00;FS=3.407;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=36.81;MQ0=7;MQRankSum=-2.208;QD=1.45;ReadPosRankSum=-0.065;SB=-3.901e+01 GT:AD:DP:GQ:PL 0/1:47,9:56:99:111,0,970 chrXII 5741 . T C 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784;DP=86;Dels=0.00;FS=4.623;HaplotypeScore=2.9931;MLEAC=1;MLEAF=0.500;MQ=40.28;MQ0=0;MQRankSum=-3.090;QD=0.60;ReadPosRankSum=0.207;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,11:86:82:82,0,2084 chrXII 5823 . A G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.589;DP=45;Dels=0.00;FS=11.738;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=0;MQRankSum=-3.923;QD=0.62;ReadPosRankSum=-2.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,6:45:58:58,0,981 chrXII 10659 . G T 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.231;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.38;MQ0=48;MQRankSum=-0.358;QD=0.98;ReadPosRankSum=0.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,3:53:42:82,0,42 chrXII 10965 . T C 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=20.62;MQ0=18;MQRankSum=-1.482;QD=3.38;ReadPosRankSum=0.741;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,8:34:99:145,0,245 chrXII 11238 . C A 116.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.650;DP=66;Dels=0.00;FS=3.526;HaplotypeScore=26.3822;MLEAC=1;MLEAF=0.500;MQ=38.90;MQ0=1;MQRankSum=-2.290;QD=1.76;ReadPosRankSum=-3.704;SB=-1.490e+02 GT:AD:DP:GQ:PL 0/1:42,24:66:99:146,0,846 chrXII 48880 . G A 62.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.174;DP=65;Dels=0.00;FS=175.436;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=2.086;QD=0.95;ReadPosRankSum=-3.416;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:36,29:65:92:92,0,410 chrXII 74181 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.59;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1749,159,0 chrXII 86742 . C A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.842;DP=51;Dels=0.00;FS=66.340;HaplotypeScore=19.4362;MLEAC=1;MLEAF=0.500;MQ=59.02;MQ0=0;MQRankSum=-0.454;QD=0.47;ReadPosRankSum=-4.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,17:51:54:54,0,407 chrXII 220717 . G A 453 filter AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,15:15:45:486,45,0 chrXII 235143 . G A 1733 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.40;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1766,162,0 chrXII 291317 . C A 1374 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.23;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1407,129,0 chrXII 397872 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=30.40;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1310,120,0 chrXII 489916 . A T 62.97 filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.99;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:9:95,9,0 chrXII 490443 . A G 379 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.80;MQ0=7;QD=18.95;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,19:20:39:412,39,0 chrXII 528749 . T A 1866 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9734;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.92;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1899,174,0 chrXII 529393 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=30.39;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1826,165,0 chrXII 543095 . G T 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378;DP=46;Dels=0.00;FS=21.133;HaplotypeScore=3.3605;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=-0.265;QD=1.35;ReadPosRankSum=-2.381;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,15:46:92:92,0,487 chrXII 563770 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.19;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1527,141,0 chrXII 564068 . T C 2214 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.92;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2247,214,0 chrXII 564107 . A T 2419 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=27.18;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2452,229,0 chrXII 564929 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.6643;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.84;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1375,132,0 chrXII 565172 . G A 1444 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=27.77;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1477,135,0 chrXII 565184 . T C 1365 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=25.28;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1398,129,0 chrXII 565195 . A G 1427 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=28.54;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1460,135,0 chrXII 565496 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=1.7653;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=29.12;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2246,211,0 chrXII 565505 . C T 2530 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=2.7192;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=31.62;SB=-1.105e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2563,235,0 chrXII 565625 . A G 1612 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.85;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1645,156,0 chrXII 566015 . T C 1175 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.66;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1208,114,0 chrXII 566021 . G A 1066 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.00;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1099,105,0 chrXII 566307 . A G 1342 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.55;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1375,132,0 chrXII 566432 . C T 997 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.16;MQ0=0;QD=26.24;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1030,96,0 chrXII 566515 . G A 2125 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.008;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;MQRankSum=-1.267;QD=31.72;ReadPosRankSum=0.646;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:2158,196,0 chrXII 566615 . T C 2076 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=28.83;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2109,198,0 chrXII 566882 . T C 639 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=24.58;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,25:26:63:672,63,0 chrXII 567365 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=29.43;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1416,132,0 chrXII 576880 . G A 1950 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=30.95;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1983,180,0 chrXII 577073 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.67;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1965,180,0 chrXII 577535 . C T 2049 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=28.86;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2082,189,0 chrXII 577607 . C G 1851 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.6166;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=29.85;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1884,177,0 chrXII 578431 . C T 1949 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=29.98;SB=-1.027e+03 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1982,180,0 chrXII 578796 . C T 1506 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=30.12;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1539,141,0 chrXII 578874 . C T 1348 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=28.08;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1381,126,0 chrXII 578913 . G A 1282 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.5986;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=26.71;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1315,123,0 chrXII 579316 . G A 1401 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.19;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1434,132,0 chrXII 579749 . T G 1355 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.11;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1388,132,0 chrXII 580245 . T C 1676 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.40;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1709,165,0 chrXII 580383 . A G 959 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.64;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:992,93,0 chrXII 580436 . C T 1386 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=28.87;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1419,129,0 chrXII 580655 . G A 1804 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.10;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1837,162,0 chrXII 580741 . C A 2111 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=29.73;SB=-1.012e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2144,199,0 chrXII 580842 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=28.35;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1564,150,0 chrXII 580944 . G A 1772 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.53;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1805,165,0 chrXII 581070 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=29.55;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1333,120,0 chrXII 581223 . C T 2750 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=3.4250;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=29.89;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:2783,259,0 chrXII 581598 . A G 1006 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=27.94;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1039,99,0 chrXII 581793 . T C 2080 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.639;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.468;QD=28.11;ReadPosRankSum=-0.983;SB=-1.118e+03 GT:AD:DP:GQ:PL 1/1:1,73:74:99:2113,182,0 chrXII 581795 . C A 2258 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=30.11;SB=-1.226e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2291,208,0 chrXII 582033 . C T 1094 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.39;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1127,105,0 chrXII 582374 . C T 1773 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=30.05;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1806,162,0 chrXII 582520 . A G 2234 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=29.79;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2267,214,0 chrXII 583188 . C A 1765 SnpCluster AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=27.58;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1798,162,0 chrXII 583193 . A C 1767 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=29.45;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1800,171,0 chrXII 583195 . A C 1739 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=28.98;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1772,171,0 chrXII 583229 . C T 1489 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=28.63;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1522,138,0 chrXII 583697 . T C 1572 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=27.58;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1605,150,0 chrXII 583763 . T G 1778 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.02;FS=0.000;HaplotypeScore=3.6137;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=28.22;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1811,177,0 chrXII 584165 . G A 1609 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=30.94;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1642,150,0 chrXII 584201 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.76;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1701,156,0 chrXII 584340 . G A 1732 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.24;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1765,159,0 chrXII 584675 . G A 2819 PASS AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=29.99;SB=-1.271e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:99:2852,262,0 chrXII 584735 . C A 2155 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=29.93;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2188,199,0 chrXII 585083 . T A 1506 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.69;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1539,144,0 chrXII 585608 . T G 1504 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.3639;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.38;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1537,144,0 chrXII 585709 . A T 1873 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=27.96;SB=-1.015e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1906,174,0 chrXII 585892 . G C 1407 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=3.9910;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=28.14;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1440,135,0 chrXII 586054 . A G 2088 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=24.86;SB=-1.279e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2121,195,0 chrXII 586124 . G A 2317 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.49;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2350,217,0 chrXII 586163 . T C 1929 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=28.37;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1962,183,0 chrXII 586255 . T C 986 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=25.28;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1019,99,0 chrXII 586284 . C T 1005 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.96;MQ0=0;QD=29.56;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1038,96,0 chrXII 586855 . C T 1185 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.296;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.380;QD=28.90;ReadPosRankSum=-0.634;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:85:1218,85,0 chrXII 586954 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=26.87;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:1081,102,0 chrXII 587247 . G A 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;MQRankSum=1.606;QD=28.33;ReadPosRankSum=-1.417;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1591,118,0 chrXII 587297 . G A 1377 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.325;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=4.9792;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;MQRankSum=1.597;QD=27.00;ReadPosRankSum=1.461;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1410,104,0 chrXII 587519 . T C 1728 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.29;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1761,165,0 chrXII 587824 . C T 1648 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.09;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1681,156,0 chrXII 588163 . C T 1995 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=26.60;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2028,186,0 chrXII 588394 . T C 1106 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.36;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1139,108,0 chrXII 588421 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=30.14;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1299,120,0 chrXII 588604 . A G 1574 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.02;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=30.27;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1607,150,0 chrXII 589024 . A G 1199 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=29.97;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1232,117,0 chrXII 589093 . C A 1372 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=26.38;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1405,147,0 chrXII 589169 . C A 1994 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.81;MQ0=0;QD=30.68;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2027,186,0 chrXII 589177 . C A 1591 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.77;MQ0=0;QD=30.60;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1624,147,0 chrXII 589339 . T C 1947 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=29.06;SB=-9.310e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1980,186,0 chrXII 589563 . A G 1554 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.26;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1587,150,0 chrXII 590028 . T C 2400 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=28.92;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2433,226,0 chrXII 590160 . T C 2489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=82;Dels=0.00;FS=8.346;HaplotypeScore=2.7720;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=1.648;QD=30.35;ReadPosRankSum=0.929;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:1,81:82:99:2522,238,0 chrXII 590505 . T G 1885 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=28.56;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1918,180,0 chrXII 591233 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.13;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1745,162,0 chrXII 591438 . A G 1825 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.42;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1858,174,0 chrXII 591465 . A T 1728 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.80;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1761,159,0 chrXII 591568 . G T 1318 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=31.38;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1351,123,0 chrXII 591955 . G T 1639 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=28.26;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1672,150,0 chrXII 591973 . G A 1530 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=30.00;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1563,141,0 chrXII 592135 . T C 1836 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=28.69;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1869,174,0 chrXII 592198 . T G 1590 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=28.39;SB=-8.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1623,150,0 chrXII 592199 . T A 1643 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=30.43;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1676,150,0 chrXII 592315 . A G 1098 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=27.45;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1131,108,0 chrXII 592353 . G A 1416 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=3.8660;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=28.90;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1449,132,0 chrXII 592468 . C A 1146 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=31.83;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1179,108,0 chrXII 592578 . C T 1087 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;QD=28.61;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:1,37:38:99:1120,102,0 chrXII 592686 . C T 1708 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=52.70;MQ0=0;QD=30.50;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1741,159,0 chrXII 592760 . T C 922 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.631;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=55.89;MQ0=0;MQRankSum=1.529;QD=26.34;ReadPosRankSum=1.325;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:1,33:35:90:955,90,0 chrXII 592872 . A G 1076 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.00;MQ0=0;QD=28.32;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1109,105,0 chrXII 593087 . C A 1245 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.46;MQ0=0;QD=30.37;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1278,117,0 chrXII 599111 . T G 972 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.49;MQ0=0;QD=23.71;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:93:1005,93,0 chrXII 599206 . A C 1416 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=46.87;MQ0=0;QD=27.23;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1449,135,0 chrXII 599232 . T A 1451 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.97;MQ0=0;QD=29.02;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1484,135,0 chrXII 599333 . G A 1728 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=51.53;MQ0=0;QD=30.86;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1761,159,0 chrXII 599406 . G A 1406 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=5.7990;MLEAC=2;MLEAF=1.00;MQ=50.00;MQ0=0;QD=31.24;SB=-4.180e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1439,132,0 chrXII 599437 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.96;MQ0=0;QD=30.23;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1484,141,0 chrXII 599482 . G T 1650 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=45.9134;MLEAC=2;MLEAF=1.00;MQ=53.09;MQ0=0;QD=29.46;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1683,153,0 chrXII 599529 . A G 1401 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=29.81;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1434,135,0 chrXII 599558 . A C 1330 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.17;MQ0=0;QD=26.60;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1363,132,0 chrXII 599677 . T C 1641 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=29.84;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1674,156,0 chrXII 599691 . A G 1940 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=28.53;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1973,186,0 chrXII 599718 . T C 1810 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=30.17;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1843,171,0 chrXII 599905 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=31.04;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1802,165,0 chrXII 600169 . C T 2009 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=31.39;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2042,186,0 chrXII 600238 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=29.53;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1480,138,0 chrXII 600445 . T G 1823 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.81;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1856,177,0 chrXII 600547 . C T 1851 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=30.85;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1884,174,0 chrXII 600676 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=28.45;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1854,174,0 chrXII 601080 . C T 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.624;DP=65;Dels=0.00;FS=3.590;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;MQRankSum=1.516;QD=28.37;ReadPosRankSum=-0.271;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:2,63:65:99:1877,168,0 chrXII 601307 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=27.31;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1535,147,0 chrXII 601489 . A G 1927 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=28.76;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1960,186,0 chrXII 601624 . G A 1270 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=30.24;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1303,117,0 chrXII 601888 . A G 1560 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=28.89;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1593,150,0 chrXII 601934 . C T 1459 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.06;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1492,138,0 chrXII 602107 . T C 1440 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.20;MQ0=0;QD=30.64;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1473,138,0 chrXII 602186 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=30.22;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1272,120,0 chrXII 602338 . G A 844 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.10;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:81:877,81,0 chrXII 602932 . A G 2200 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=28.57;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2233,208,0 chrXII 603057 . A T 1396 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=28.49;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1429,138,0 chrXII 603075 . G T 1510 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=30.20;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1543,141,0 chrXII 603077 . G A 1456 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=29.71;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1489,138,0 chrXII 603141 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=25.93;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1148,105,0 chrXII 603154 . C A 1310 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.05;MQ0=0;QD=29.77;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1343,123,0 chrXII 603161 . T C 1143 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.69;MQ0=0;QD=30.08;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1176,111,0 chrXII 603180 . C T 1099 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.59;MQ0=0;QD=31.40;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1132,105,0 chrXII 603216 . A T 919 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.78;MQ0=0;QD=30.63;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:90:952,90,0 chrXII 603313 . C G 860 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.89;MQ0=0;QD=26.06;SB=-3.050e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:893,87,0 chrXII 603319 . A G 1135 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=29.10;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1168,114,0 chrXII 603325 . C T 1413 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.10;MQ0=0;QD=30.06;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1446,132,0 chrXII 603566 . A G 731 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=25.21;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:72:764,72,0 chrXII 603584 . T A 877 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=25.79;SB=-3.900e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:910,84,0 chrXII 603646 . T A 1048 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=28.32;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1081,99,0 chrXII 603667 . T C 898 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=29.93;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:87:931,87,0 chrXII 603907 . C A 1596 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=30.11;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1629,150,0 chrXII 604223 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=30.05;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1926,171,0 chrXII 604799 . G C 1290 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=29.32;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1323,126,0 chrXII 604825 . A G 845 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=27.26;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:878,81,0 chrXII 604997 . G A 1210 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=29.51;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1243,114,0 chrXII 607128 . G A 1963 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.67;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1996,180,0 chrXII 607134 . T C 1803 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.05;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1836,168,0 chrXII 607531 . C T 1953 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=29.59;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1986,183,0 chrXII 607637 . G A 1088 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=31.09;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1121,105,0 chrXII 607680 . A G 843 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.81;MQ0=0;QD=25.55;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:876,84,0 chrXII 607707 . A G 804 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.07;MQ0=0;QD=25.94;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:837,78,0 chrXII 607722 . C T 810 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=25.31;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:843,78,0 chrXII 607737 . A G 838 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=24.65;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:871,84,0 chrXII 607779 . T C 685 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.42;MQ0=0;QD=23.62;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:69:718,69,0 chrXII 607790 . T C 782 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;QD=23.70;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:78:815,78,0 chrXII 607791 . T C 733 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.26;MQ0=0;MQRankSum=-0.053;QD=22.21;ReadPosRankSum=0.893;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:1,32:33:75:766,75,0 chrXII 607814 . A G 767 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.91;MQ0=0;QD=24.74;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:800,75,0 chrXII 607922 . C T 64.51 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=0.83;SB=-4.985e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:12:97,12,0 chrXII 607923 . T C 87.26 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=1.12;SB=-4.773e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:15:120,15,0 chrXII 607998 . T G 2304 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=29.54;SB=-1.157e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2337,225,0 chrXII 608022 . A G 2623 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=29.81;SB=-1.373e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2656,247,0 chrXII 608102 . G A 2274 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=30.32;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,74:75:99:2307,214,0 chrXII 608136 . G A 1862 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.7719;MLEAC=2;MLEAF=1.00;MQ=57.10;MQ0=0;QD=28.65;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1895,174,0 chrXII 608472 . C T 2785 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.65;SB=-1.369e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2818,259,0 chrXII 608666 . C T 1300 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=30.95;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1333,123,0 chrXII 608673 . C T 1232 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=29.33;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1265,117,0 chrXII 608685 . T C 1297 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.80;MQ0=0;QD=30.16;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1330,123,0 chrXII 608709 . A G 1142 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=28.55;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1175,111,0 chrXII 608724 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.48;MQ0=0;QD=28.50;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1629,150,0 chrXII 608748 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=30.96;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1798,165,0 chrXII 608955 . T C 2541 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.92;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2574,247,0 chrXII 609039 . T C 2565 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.54;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2598,244,0 chrXII 609087 . G A 2511 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=30.25;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2544,235,0 chrXII 609126 . C T 2435 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.31;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2468,226,0 chrXII 609177 . A C 2583 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=27.19;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:2616,247,0 chrXII 609194 . T G 2299 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=25.83;SB=-1.272e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2332,223,0 chrXII 609213 . A G 2418 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=28.12;SB=-1.278e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2451,235,0 chrXII 609380 . G A 2608 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.05;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2641,244,0 chrXII 609555 . A G 2000 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=57.01;MQ0=0;QD=28.17;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2033,189,0 chrXII 609559 . A G 1900 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=27.54;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:1933,183,0 chrXII 609572 . A G 1842 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.2611;MLEAC=2;MLEAF=1.00;MQ=56.67;MQ0=0;QD=28.78;SB=-9.820e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1875,177,0 chrXII 609662 . C G 1968 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=29.82;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2001,186,0 chrXII 609899 . T C 1951 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=28.69;SB=-1.023e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1984,186,0 chrXII 610061 . T C 1713 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.63;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1746,165,0 chrXII 610109 . G A 1576 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.17;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1609,147,0 chrXII 610430 . A G 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.815;DP=69;Dels=0.00;FS=3.411;HaplotypeScore=4.8987;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;MQRankSum=-0.509;QD=25.59;ReadPosRankSum=-0.968;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:1,68:69:99:1799,145,0 chrXII 610544 . C T 1554 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=26.34;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1587,144,0 chrXII 610547 . A G 1671 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=27.85;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1704,156,0 chrXII 610619 . G A 1292 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.92;MQ0=0;QD=28.09;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1325,120,0 chrXII 610640 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=29.23;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1699,159,0 chrXII 610829 . C T 1996 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=28.93;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2029,186,0 chrXII 610920 . T C 1824 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=29.90;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1857,177,0 chrXII 610934 . T C 1508 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=29.00;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1541,150,0 chrXII 611018 . T C 1326 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.970;DP=51;Dels=0.00;FS=4.202;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;MQRankSum=-1.317;QD=26.00;ReadPosRankSum=-0.901;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1359,103,0 chrXII 611030 . C G 1558 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DP=61;Dels=0.00;FS=4.559;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;MQRankSum=0.982;QD=25.54;ReadPosRankSum=-0.577;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1591,125,0 chrXII 611045 . A G 1437 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.114;DP=56;Dels=0.00;FS=4.472;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;MQRankSum=0.186;QD=25.66;ReadPosRankSum=0.742;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1470,115,0 chrXII 611078 . G A 1391 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.28;MQ0=0;QD=24.40;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1424,132,0 chrXII 611179 . T C 1610 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=26.39;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1643,159,0 chrXII 611201 . C T 1574 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=28.62;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1607,147,0 chrXII 611203 . T C 1629 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=28.58;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1662,156,0 chrXII 611769 . C T 1954 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=27.52;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1987,183,0 chrXII 611779 . A G 1565 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;MQRankSum=-0.213;QD=27.46;ReadPosRankSum=0.699;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1598,153,0 chrXII 611812 . T A 1656 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=27.60;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1689,156,0 chrXII 611893 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.31;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1788,165,0 chrXII 611994 . A G 1422 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.88;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1455,141,0 chrXII 616887 . G A 1341 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.93;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1374,126,0 chrXII 617208 . G T 1823 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=28.05;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1856,171,0 chrXII 617372 . A T 1609 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=27.27;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1642,153,0 chrXII 617379 . C G 1608 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=26.80;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1641,153,0 chrXII 617706 . A G 2129 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=31.31;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2162,204,0 chrXII 617865 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=31.54;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2241,208,0 chrXII 618108 . G A 1933 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=30.68;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1966,177,0 chrXII 618279 . T C 1923 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=30.05;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1956,183,0 chrXII 619023 . T C 996 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=39;Dels=0.00;FS=5.911;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=0.133;QD=25.54;ReadPosRankSum=1.288;SB=-2.140e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:99:1029,99,0 chrXII 619242 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=29.23;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1816,168,0 chrXII 619341 . T C 1598 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.63;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1631,153,0 chrXII 619476 . T C 1968 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.94;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2001,189,0 chrXII 619650 . A G 2270 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2303,211,0 chrXII 619731 . T C 2221 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.61;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2254,211,0 chrXII 619752 . G A 1890 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.53;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1923,177,0 chrXII 619971 . T G 2198 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.55;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2231,213,0 chrXII 620740 . T C 1407 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.06;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1440,135,0 chrXII 621336 . G A 1221 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.42;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1254,114,0 chrXII 621513 . T A 1306 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=30.37;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1339,120,0 chrXII 621546 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6229;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=29.05;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1805,162,0 chrXII 621672 . G T 1848 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.7219;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=28.87;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1881,171,0 chrXII 621897 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=29.04;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1601,144,0 chrXII 622068 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.50;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1558,144,0 chrXII 622344 . C T 1845 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.76;SB=-9.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1878,171,0 chrXII 622500 . C T 1132 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.33;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1165,105,0 chrXII 622806 . T C 1998 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=29.38;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2031,192,0 chrXII 622969 . A G 1865 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=29.60;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1898,177,0 chrXII 622999 . A G 1537 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=29.56;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1570,147,0 chrXII 623059 . A G 1328 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=28.87;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1361,129,0 chrXII 623491 . A G 1393 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.79;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1426,135,0 chrXII 623494 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=27.53;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1437,132,0 chrXII 623830 . C G 2334 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=27.46;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2367,223,0 chrXII 624955 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.79;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1530,144,0 chrXII 625037 . T C 1065 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.76;MQ0=0;QD=27.31;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1098,105,0 chrXII 625055 . A G 748 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=35;Dels=0.00;FS=3.680;HaplotypeScore=26.7645;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;MQRankSum=1.040;QD=21.37;ReadPosRankSum=1.535;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:75:781,75,0 chrXII 625450 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=28.59;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1205,117,0 chrXII 625558 . T G 1283 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.84;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1316,126,0 chrXII 626422 . T A 912 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.95;MQ0=0;QD=27.64;SB=-1.500e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:945,87,0 chrXII 627007 . T C 746 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.69;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:779,72,0 chrXII 627201 . G C 1738 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=28.49;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1771,165,0 chrXII 627274 . T A 1853 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.89;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1886,171,0 chrXII 627361 . C T 1668 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=29.26;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1701,156,0 chrXII 627370 . G A 1656 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=29.57;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1689,156,0 chrXII 627543 . T C 969 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.28;SB=-4.090e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:93:1002,93,0 chrXII 628215 . G T 1567 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.02;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1600,147,0 chrXII 628271 . T C 1344 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=28.60;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1377,129,0 chrXII 628274 . G C 1402 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=29.83;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1435,135,0 chrXII 628349 . G T 1813 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=30.22;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1846,168,0 chrXII 628361 . A T 1892 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.67;MQ0=0;QD=29.56;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1925,177,0 chrXII 628365 . C A 1952 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=30.50;SB=-7.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1985,180,0 chrXII 628424 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=30.05;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1235,114,0 chrXII 629441 . C T 1112 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=30.05;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1145,105,0 chrXII 629690 . T C 1849 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.41;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1882,177,0 chrXII 629914 . A G 1310 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.9722;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=28.48;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1343,126,0 chrXII 629974 . A G 2020 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.01;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=29.28;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2053,192,0 chrXII 630048 . G A 1674 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.264;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.497;QD=28.37;ReadPosRankSum=-1.028;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1707,129,0 chrXII 630314 . A G 1798 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.00;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1831,171,0 chrXII 630328 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.20;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1785,174,0 chrXII 630870 . C T 1480 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=29.02;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1513,138,0 chrXII 630901 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=29.22;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1465,135,0 chrXII 630917 . T C 1300 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=27.66;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1333,126,0 chrXII 630958 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=28.16;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1469,141,0 chrXII 631177 . G A 2208 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=31.10;SB=-1.074e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2241,205,0 chrXII 631423 . A C 1271 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.26;SB=-5.710e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1304,123,0 chrXII 632067 . T C 911 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.040;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=1.634;QD=26.03;ReadPosRankSum=0.545;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:87:944,87,0 chrXII 632381 . A C 1244 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=30.34;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1277,117,0 chrXII 632671 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;QD=30.31;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1700,153,0 chrXII 632910 . T C 1198 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=27.23;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1231,114,0 chrXII 632986 . A G 1487 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.16;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1520,144,0 chrXII 633127 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=29.27;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1321,123,0 chrXII 633130 . G A 1282 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.8533;MLEAC=2;MLEAF=1.00;MQ=52.77;MQ0=0;QD=29.14;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1315,120,0 chrXII 633149 . C T 1305 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.94;MQ0=0;QD=29.00;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1338,123,0 chrXII 633163 . G A 1047 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.23;MQ0=0;QD=29.08;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1080,99,0 chrXII 633190 . T C 890 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.28;MQ0=0;QD=25.43;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:923,87,0 chrXII 633199 . G A 819 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.79;MQ0=0;QD=25.59;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:78:852,78,0 chrXII 633207 . T C 788 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.32;MQ0=0;QD=25.42;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:821,78,0 chrXII 633302 . T C 1443 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=27.75;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1476,138,0 chrXII 633316 . G A 1722 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=28.23;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1755,162,0 chrXII 633347 . G T 1761 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=3.300;HaplotypeScore=1.5661;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=1.453;QD=28.40;ReadPosRankSum=1.453;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1794,165,0 chrXII 633355 . T C 1612 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=27.32;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1645,153,0 chrXII 633477 . A G 1480 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.02;FS=0.000;HaplotypeScore=8.3326;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=25.96;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1513,144,0 chrXII 633782 . C T 1096 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.94;MQ0=0;QD=26.10;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1129,105,0 chrXII 634127 . T C 1653 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=27.55;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1686,156,0 chrXII 634189 . G C 1337 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=29.71;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1370,129,0 chrXII 634219 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.44;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1448,132,0 chrXII 634488 . G A 2152 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=30.31;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2185,204,0 chrXII 634506 . A C 2042 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=29.59;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2075,192,0 chrXII 634577 . G A 1988 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=28.00;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2021,186,0 chrXII 634698 . T C 1706 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=31.02;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1739,162,0 chrXII 634813 . A C 1246 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=28.98;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1279,120,0 chrXII 634860 . C T 1611 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.98;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1644,150,0 chrXII 634941 . A G 1750 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=30.17;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1783,165,0 chrXII 634949 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.8055;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=28.91;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1912,177,0 chrXII 635025 . A G 1665 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=28.22;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1698,156,0 chrXII 635234 . G C 1602 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.6448;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=0.793;QD=26.70;ReadPosRankSum=-1.674;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:1,58:60:99:1635,129,0 chrXII 635382 . C T 1976 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=29.06;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2009,183,0 chrXII 635391 . T C 1848 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.630;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7834;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-0.459;QD=27.18;ReadPosRankSum=-0.459;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1881,152,0 chrXII 635617 . G T 1543 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=31.49;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1576,141,0 chrXII 635886 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.42;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1254,117,0 chrXII 636132 . A G 2354 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=26.16;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2387,226,0 chrXII 636165 . T A 2229 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=30.53;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2262,208,0 chrXII 636269 . G A 1752 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=27.81;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1785,162,0 chrXII 636684 . A T 1532 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=30.04;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1565,144,0 chrXII 636690 . T A 1511 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=26.98;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1544,144,0 chrXII 637193 . C A 1324 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=28.78;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1357,123,0 chrXII 637236 . A T 1510 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=29.04;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1543,141,0 chrXII 637467 . T C 1434 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=30.51;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1467,135,0 chrXII 637773 . G C 1448 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=28.96;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1481,138,0 chrXII 638087 . C T 1710 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=28.03;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1743,162,0 chrXII 638411 . G A 1797 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=28.08;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1830,165,0 chrXII 641406 . A G 1048 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=29.11;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1081,99,0 chrXII 641415 . C T 1222 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=31.33;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1255,114,0 chrXII 641462 . G A 1469 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=29.38;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1502,141,0 chrXII 641481 . A C 1592 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=30.04;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1625,150,0 chrXII 642132 . A G 1420 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.21;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1453,138,0 chrXII 642188 . T A 1983 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=30.98;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2016,186,0 chrXII 642387 . T C 1622 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.46;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1655,153,0 chrXII 642476 . A G 1807 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.63;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1840,174,0 chrXII 642557 . C T 1361 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.59;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1394,129,0 chrXII 642815 . A G 1482 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.50;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1515,150,0 chrXII 643565 . C T 2187 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=4.7874;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=30.37;SB=-1.078e+03 GT:AD:DP:GQ:PL 1/1:0,71:72:99:2220,205,0 chrXII 643838 . G A 1718 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.407;DP=64;Dels=0.00;FS=4.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;MQRankSum=1.678;QD=26.84;ReadPosRankSum=1.245;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:1751,132,0 chrXII 643914 . A G 995 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.6609;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=23.14;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1028,99,0 chrXII 644075 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.19;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1746,162,0 chrXII 644081 . A G 1706 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.52;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1739,162,0 chrXII 644135 . C T 1942 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=28.99;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1975,180,0 chrXII 644551 . A G 2000 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.635;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;MQRankSum=-1.586;QD=28.17;ReadPosRankSum=0.415;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:2033,176,0 chrXII 645198 . T C 1192 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=25.91;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1225,117,0 chrXII 645219 . A G 873 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=11.3823;MLEAC=2;MLEAF=1.00;MQ=56.60;MQ0=0;QD=17.82;SB=-3.730e+02 GT:AD:DP:GQ:PL 1/1:0,41:49:87:906,87,0 chrXII 645338 . G A 2263 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=29.39;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2296,214,0 chrXII 645354 . A G 2150 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.689;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.9894;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;MQRankSum=0.650;QD=26.54;ReadPosRankSum=-1.039;SB=-1.079e+03 GT:AD:DP:GQ:PL 1/1:1,80:81:99:2183,207,0 chrXII 645452 . A G 1356 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=28.25;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1389,129,0 chrXII 646705 . A G 2086 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=28.58;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2119,201,0 chrXII 646822 . G A 2065 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=27.91;SB=-1.163e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2098,193,0 chrXII 646848 . C T 2229 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=30.96;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2262,208,0 chrXII 646906 . A T 1999 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2032,186,0 chrXII 647017 . C T 1157 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=27.55;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1190,111,0 chrXII 647095 . A G 1626 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=29.04;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1659,153,0 chrXII 647371 . T C 1756 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=28.79;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1789,165,0 chrXII 647512 . A G 1669 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.08;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1702,165,0 chrXII 647752 . T C 2003 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=29.90;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2036,192,0 chrXII 647778 . G A 1922 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9705;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.03;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1955,183,0 chrXII 647788 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.9705;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.03;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,62:64:99:1891,183,0 chrXII 647854 . C T 1916 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.94;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1949,180,0 chrXII 647936 . G A 2015 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=29.63;SB=-1.010e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2048,189,0 chrXII 648649 . C T 1705 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=28.90;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1738,159,0 chrXII 648877 . T C 1545 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.09;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1578,147,0 chrXII 648953 . T C 1582 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.4095;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=28.76;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1615,150,0 chrXII 649036 . G A 1684 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=30.62;SB=-6.260e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1717,156,0 chrXII 649061 . G A 1482 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=30.24;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1515,138,0 chrXII 649258 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=29.22;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1991,180,0 chrXII 649837 . A G 1801 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6517;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=28.14;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1834,171,0 chrXII 649865 . G A 1560 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=28.89;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1593,147,0 chrXII 649883 . T C 1417 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.34;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1450,135,0 chrXII 650212 . T C 1496 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.30;MQ0=0;QD=25.79;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1529,147,0 chrXII 650327 . A T 1765 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=28.47;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1798,165,0 chrXII 650767 . C T 1045 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.61;MQ0=0;QD=29.86;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1078,99,0 chrXII 656891 . G A 1318 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.60;MQ0=0;QD=29.29;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1351,123,0 chrXII 656912 . G A 1446 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.70;MQ0=0;QD=28.92;SB=-9.801e+01 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1479,135,0 chrXII 657022 . T C 433.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.075;DP=49;Dels=0.00;FS=72.411;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=35.38;MQ0=0;MQRankSum=5.299;QD=8.84;ReadPosRankSum=5.299;SB=-8.302e+01 GT:AD:DP:GQ:PL 0/1:29,20:49:38:463,0,38 chrXII 657027 . T C 459.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.515;DP=50;Dels=0.00;FS=73.837;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=35.26;MQ0=0;MQRankSum=4.941;QD=9.18;ReadPosRankSum=3.654;SB=-8.102e+01 GT:AD:DP:GQ:PL 0/1:30,20:50:67:489,0,67 chrXII 657041 . G A 827 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=34.56;MQ0=0;QD=14.51;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:78:860,78,0 chrXII 657045 . G A 290.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.982;DP=59;Dels=0.00;FS=97.317;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=35.84;MQ0=0;MQRankSum=-4.346;QD=4.92;ReadPosRankSum=-0.198;SB=-1.068e-03 GT:AD:DP:GQ:PL 0/1:21,38:59:99:320,0,566 chrXII 657049 . G A 1079 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.38;MQ0=0;QD=17.98;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1112,102,0 chrXII 657181 . A C 698.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.047;DP=52;Dels=0.00;FS=54.399;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.58;MQ0=0;MQRankSum=-1.902;QD=13.42;ReadPosRankSum=1.399;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,31:52:99:728,0,521 chrXII 657212 . C T 393.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.529;DP=42;Dels=0.00;FS=29.283;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.89;MQ0=0;MQRankSum=0.470;QD=9.36;ReadPosRankSum=-1.029;SB=-2.260e+02 GT:AD:DP:GQ:PL 0/1:24,18:42:99:423,0,591 chrXII 657303 . A T 1059 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.86;MQ0=0;QD=28.62;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1092,99,0 chrXII 657331 . G A 135.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.603;DP=39;Dels=0.00;FS=21.707;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.77;MQ0=0;MQRankSum=-4.385;QD=3.46;ReadPosRankSum=0.827;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:28,11:39:99:165,0,750 chrXII 657332 . G C 1023 SnpCluster AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.77;MQ0=0;QD=26.23;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1056,99,0 chrXII 657335 . C T 124.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.251;DP=41;Dels=0.00;FS=17.568;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=50.06;MQ0=0;MQRankSum=-3.928;QD=3.02;ReadPosRankSum=1.810;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,11:41:99:154,0,809 chrXII 657344 . G A 127.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.695;DP=40;Dels=0.00;FS=17.685;HaplotypeScore=0.9973;MLEAC=1;MLEAF=0.500;MQ=49.78;MQ0=0;MQRankSum=-4.362;QD=3.18;ReadPosRankSum=1.151;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,11:40:99:157,0,778 chrXII 657370 . C G 108.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957;DP=41;Dels=0.00;FS=10.822;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.03;MQ0=0;MQRankSum=-4.870;QD=2.63;ReadPosRankSum=-3.575;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,11:41:99:138,0,830 chrXII 657492 . C G 1395 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=31.00;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1428,132,0 chrXII 657529 . G A 1928 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.10;SB=-3.000e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1961,177,0 chrXII 658104 . G A 1447 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.46;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1480,135,0 chrXII 658158 . G C 1338 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=28.47;SB=-3.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1371,129,0 chrXII 658599 . G T 1648 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.69;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1681,153,0 chrXII 659350 . C T 1168 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.55;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1201,111,0 chrXII 659470 . A T 1163 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=29.07;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1196,111,0 chrXII 659916 . T C 1270 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=27.61;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1303,120,0 chrXII 659919 . G A 1327 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=30.16;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1360,123,0 chrXII 660046 . T C 1368 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=29.74;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1401,132,0 chrXII 660194 . A G 1659 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.65;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1692,159,0 chrXII 660357 . C T 2043 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=27.99;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2076,192,0 chrXII 660371 . C T 1955 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=28.33;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1988,183,0 chrXII 660472 . G A 1669 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=30.35;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1702,153,0 chrXII 660622 . A T 1429 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=30.40;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1462,132,0 chrXII 660916 . A G 2204 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=30.19;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2237,211,0 chrXII 661444 . G A 2350 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=28.66;SB=-7.030e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2383,225,0 chrXII 661750 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=30.06;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1957,180,0 chrXII 661864 . T C 1696 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=28.75;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1729,165,0 chrXII 661927 . A G 2034 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.91;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2067,192,0 chrXII 662311 . T C 2102 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.9132;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=28.79;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2135,199,0 chrXII 662318 . G T 2164 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7825;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=30.48;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2197,202,0 chrXII 662353 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=29.07;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1661,153,0 chrXII 662494 . C G 1814 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.6297;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.74;SB=-3.480e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1847,177,0 chrXII 662515 . G A 2171 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=31.46;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2204,202,0 chrXII 662627 . T C 1976 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.06;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2009,186,0 chrXII 662864 . A T 1744 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=1.556;QD=29.56;ReadPosRankSum=1.556;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1777,159,0 chrXII 662978 . G A 1227 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.67;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1260,117,0 chrXII 663017 . T C 1174 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=29.35;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1207,111,0 chrXII 663332 . G A 1659 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.16;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1692,156,0 chrXII 663368 . A G 1781 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.19;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1814,171,0 chrXII 663890 . T C 1441 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=26.20;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1474,138,0 chrXII 664139 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.81;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1963,183,0 chrXII 664157 . A G 1849 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.35;SB=-3.830e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1882,174,0 chrXII 664658 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=27.31;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1726,162,0 chrXII 665159 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=28.55;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1603,144,0 chrXII 665216 . G A 1285 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=27.34;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1318,120,0 chrXII 665434 . G A 1486 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.94;MQ0=0;QD=29.14;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1519,138,0 chrXII 665756 . T G 1653 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=28.50;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1686,156,0 chrXII 666395 . T C 1972 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=29.00;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2005,192,0 chrXII 666935 . A G 1347 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.06;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1380,135,0 chrXII 667459 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.47;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1595,150,0 chrXII 667631 . T A 2267 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=29.44;SB=-1.186e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2300,208,0 chrXII 667773 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.55;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1926,177,0 chrXII 667877 . T C 1195 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=29.15;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1228,111,0 chrXII 668207 . G C 1745 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=28.15;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1778,165,0 chrXII 668241 . G A 1765 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=28.93;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1798,162,0 chrXII 668244 . C T 1800 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=29.51;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1833,168,0 chrXII 668550 . G A 1887 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=31.45;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1920,177,0 chrXII 668899 . C T 1454 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.51;SB=-4.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1487,138,0 chrXII 669013 . T C 1924 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.88;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1957,183,0 chrXII 669043 . C T 2068 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=29.54;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2101,193,0 chrXII 669053 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.9301;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=29.58;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2015,183,0 chrXII 669236 . C A 1849 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=30.82;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1882,174,0 chrXII 669290 . T A 2128 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=29.97;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2161,199,0 chrXII 669293 . G C 1980 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=28.70;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2013,192,0 chrXII 669897 . C A 877 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=20.40;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:84:910,84,0 chrXII 669920 . G T 822 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=20.05;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:78:855,78,0 chrXII 669990 . T A 1665 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=30.27;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1698,156,0 chrXII 669994 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=30.40;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1705,156,0 chrXII 670009 . T A 1877 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.11;MQ0=0;QD=30.27;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1910,174,0 chrXII 670061 . C G 1815 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.32;MQ0=0;QD=28.36;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1848,177,0 chrXII 670176 . G A 1570 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.62;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1603,147,0 chrXII 670291 . T A 1476 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.14;MQ0=0;QD=30.12;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1509,138,0 chrXII 670299 . T G 1554 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.25;MQ0=0;QD=29.32;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1587,150,0 chrXII 670304 . G C 12.99 LowQual;filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.37;MQ0=0;QD=0.22;SB=-6.428e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:6:44,6,0 chrXII 670460 . C G 1973 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.89;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2006,186,0 chrXII 670864 . A G 1234 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=22.04;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1267,120,0 chrXII 670933 . G A 1298 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.19;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1331,123,0 chrXII 670999 . C T 1729 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.2215;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=27.89;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1762,162,0 chrXII 671032 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=2.6616;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=26.44;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1461,138,0 chrXII 671167 . A G 940 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.37;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:973,90,0 chrXII 671257 . T C 1442 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.27;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1475,141,0 chrXII 671310 . A G 1404 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=28.08;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1437,135,0 chrXII 671323 . G C 1445 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.33;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1478,144,0 chrXII 671463 . T C 2462 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=28.96;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2495,235,0 chrXII 671465 . G A 2478 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=29.50;SB=-1.035e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2511,229,0 chrXII 671555 . C T 1437 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.11;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1470,132,0 chrXII 671563 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.58;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1357,126,0 chrXII 671669 . G A 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.808;DP=60;Dels=0.00;FS=3.158;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;MQRankSum=0.751;QD=30.27;ReadPosRankSum=-1.444;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1849,142,0 chrXII 671703 . A G 1485 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.267;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.266;QD=28.56;ReadPosRankSum=1.266;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1518,115,0 chrXII 671821 . T C 1403 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.23;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1436,135,0 chrXII 671956 . A C 1896 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=29.17;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1929,180,0 chrXII 672242 . G A 1971 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=30.32;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2004,183,0 chrXII 672265 . A G 2108 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=30.11;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2141,201,0 chrXII 672293 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=27.58;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1798,165,0 chrXII 672317 . T C 1614 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=27.83;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1647,156,0 chrXII 672355 . G C 1993 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=28.47;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2026,192,0 chrXII 672394 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.03;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1775,162,0 chrXII 672505 . G C 2186 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=26.99;SB=-1.252e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2219,207,0 chrXII 672556 . T G 1925 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=30.08;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1958,186,0 chrXII 672637 . T C 1287 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=28.60;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1320,123,0 chrXII 672683 . T G 1156 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=28.20;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1189,114,0 chrXII 672778 . C A 2101 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.049;DP=70;Dels=0.00;FS=5.027;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.049;QD=30.01;ReadPosRankSum=0.643;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:1,69:70:99:2134,165,0 chrXII 673080 . T C 1365 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.25;MQ0=0;QD=28.44;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1398,132,0 chrXII 673090 . T C 1445 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=28.90;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1478,138,0 chrXII 673111 . A G 1688 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.22;MQ0=0;QD=30.14;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1721,162,0 chrXII 673274 . T C 1974 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=50.72;MQ0=0;QD=30.37;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2007,189,0 chrXII 673337 . G A 33.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.269;DP=47;Dels=0.00;FS=10.307;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.85;MQ0=0;MQRankSum=-3.156;QD=0.72;ReadPosRankSum=4.402;SB=-3.938e+02 GT:AD:DP:GQ:PL 1/1:8,39:47:6:65,6,0 chrXII 673346 . A G 1059 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=26.47;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1092,102,0 chrXII 673354 . C G 930 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=25.83;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:963,90,0 chrXII 673355 . T A 956 SnpCluster AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=26.56;SB=-2.840e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:90:989,90,0 chrXII 673369 . G A 962 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=34.8493;MLEAC=2;MLEAF=1.00;MQ=30.14;MQ0=0;MQRankSum=-1.648;QD=23.46;ReadPosRankSum=-0.380;SB=-2.460e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:72:995,72,0 chrXII 673373 . A G 795 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.03;FS=0.000;HaplotypeScore=40.2950;MLEAC=2;MLEAF=1.00;MQ=30.33;MQ0=0;QD=22.71;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:81:828,81,0 chrXII 673436 . T C 1526 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.92;MQ0=0;QD=26.77;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1559,147,0 chrXII 673533 . A G 1790 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=30.34;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1823,171,0 chrXII 673539 . G A 1807 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=30.63;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1840,171,0 chrXII 673886 . G A 1872 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.8962;MLEAC=2;MLEAF=1.00;MQ=55.05;MQ0=0;QD=30.19;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1905,177,0 chrXII 674079 . A C 1024 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=30.9283;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=28.44;SB=-3.060e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1057,102,0 chrXII 674152 . A G 1180 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=28.78;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1213,117,0 chrXII 674199 . A G 1521 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.70;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1554,147,0 chrXII 674615 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.87;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1731,159,0 chrXII 674647 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=30.26;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1909,174,0 chrXII 674699 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.38;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1613,147,0 chrXII 674711 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.73;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1527,144,0 chrXII 674763 . T A 1081 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.37;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1114,105,0 chrXII 674781 . T C 1401 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.94;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1434,135,0 chrXII 674877 . A G 1464 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=27.11;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1497,138,0 chrXII 674975 . C G 1820 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=25.28;SB=-5.040e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:1853,174,0 chrXII 675042 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=30.26;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1879,171,0 chrXII 675110 . C T 1488 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=28.62;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1521,138,0 chrXII 675394 . T A 1878 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=28.89;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1911,177,0 chrXII 675407 . C T 1876 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.4533;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=28.86;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:1909,174,0 chrXII 675924 . T C 864 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.02;MQ0=0;QD=24.69;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:87:897,87,0 chrXII 675925 . A G 882 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=26.73;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:915,87,0 chrXII 675961 . C G 874 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=30.14;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:907,84,0 chrXII 676076 . G C 2105 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=28.45;SB=-4.770e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2138,201,0 chrXII 676609 . G A 1551 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=31.02;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1584,144,0 chrXII 676612 . C G 1466 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=29.92;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1499,141,0 chrXII 676885 . G A 2303 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.372;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=-0.967;QD=29.91;ReadPosRankSum=-0.787;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:1,76:77:99:2336,189,0 chrXII 676925 . G C 1971 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=29.86;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2004,186,0 chrXII 676937 . T C 1772 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.05;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1805,171,0 chrXII 677005 . A G 2235 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=29.41;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,75:76:99:2268,211,0 chrXII 677132 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=31.00;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2017,183,0 chrXII 677164 . A G 1582 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=28.25;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1615,150,0 chrXII 677323 . A G 1186 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=25.23;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1219,114,0 chrXII 677675 . G A 1468 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.23;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1501,138,0 chrXII 677699 . T G 1347 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=26.41;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1380,129,0 chrXII 677814 . T C 1474 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.32;SB=-5.690e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1507,144,0 chrXII 677900 . T C 2054 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=30.21;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2087,195,0 chrXII 677991 . G A 2077 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=30.10;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:2110,195,0 chrXII 678096 . T C 1759 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=28.84;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1792,168,0 chrXII 678194 . C T 1934 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=30.70;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1967,180,0 chrXII 678531 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=31.02;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2049,187,0 chrXII 678619 . C T 1470 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.62;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1503,138,0 chrXII 678645 . T C 1767 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.47;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1800,168,0 chrXII 678751 . T C 2520 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=30.36;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2553,244,0 chrXII 678793 . C G 2121 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=30.30;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:2154,204,0 chrXII 678817 . T A 2051 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=28.10;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2084,192,0 chrXII 679180 . G A 1935 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=31.21;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1968,180,0 chrXII 679276 . C T 1408 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=30.61;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1441,132,0 chrXII 679403 . T C 1071 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=28.95;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1104,102,0 chrXII 679496 . A G 1782 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.20;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1815,171,0 chrXII 679600 . C T 1151 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.29;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1184,108,0 chrXII 679807 . G A 1473 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.06;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1506,135,0 chrXII 680005 . A C 974 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=27.83;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:1007,93,0 chrXII 680159 . C T 1920 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=29.09;SB=-8.910e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1953,177,0 chrXII 680346 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.78;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1373,129,0 chrXII 680364 . C T 1409 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=30.63;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1442,132,0 chrXII 680926 . G A 2287 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.98;MQ0=0;QD=29.70;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2320,214,0 chrXII 680974 . A G 2077 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=28.45;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2110,207,0 chrXII 681097 . T C 1983 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=27.16;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2016,192,0 chrXII 681563 . A G 1759 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.65;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1792,165,0 chrXII 681614 . G A 1506 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=28.96;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1539,141,0 chrXII 681851 . A G 1868 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.69;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1901,177,0 chrXII 682248 . A C 1840 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=28.31;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1873,177,0 chrXII 682830 . G A 1992 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=28.87;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2025,186,0 chrXII 682839 . C A 1756 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=30.28;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1789,165,0 chrXII 682874 . T C 1648 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.09;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1681,159,0 chrXII 683001 . C T 1385 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.85;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1418,129,0 chrXII 683357 . T C 1094 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.79;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1127,108,0 chrXII 683405 . T C 1148 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.33;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1181,114,0 chrXII 683462 . G A 1876 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=29.31;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1909,177,0 chrXII 683798 . C T 1621 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=30.02;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1654,153,0 chrXII 683858 . T C 1326 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.62;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1359,129,0 chrXII 684068 . T G 1604 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=30.26;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1637,153,0 chrXII 684167 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=29.02;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1658,156,0 chrXII 684236 . A G 1248 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.36;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1281,123,0 chrXII 684641 . T C 1112 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=27.12;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1145,108,0 chrXII 684650 . T A 1234 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.67;MQ0=0;QD=26.83;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1267,111,0 chrXII 684653 . T C 1245 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=26.49;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1278,117,0 chrXII 684785 . G A 2393 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=29.18;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2426,223,0 chrXII 685228 . A T 1753 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=28.27;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1786,162,0 chrXII 685721 . A T 1845 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=28.83;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1878,168,0 chrXII 685853 . T C 1216 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=27.64;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1249,117,0 chrXII 686000 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6120;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=31.54;SB=-9.110e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1831,168,0 chrXII 686213 . G A 1605 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=29.18;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1638,150,0 chrXII 686636 . C T 1231 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=25.65;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1264,117,0 chrXII 686785 . G A 2042 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=29.59;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2075,190,0 chrXII 686789 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=30.84;SB=-1.119e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2161,199,0 chrXII 687405 . T C 914 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=26.0957;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=29.48;SB=-1.620e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:947,87,0 chrXII 687587 . G A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.691;DP=59;Dels=0.00;FS=31.396;HaplotypeScore=7.1807;MLEAC=1;MLEAF=0.500;MQ=46.74;MQ0=0;MQRankSum=-1.216;QD=0.44;ReadPosRankSum=-2.306;SB=-6.004e+01 GT:AD:DP:GQ:PL 0/1:48,11:59:56:56,0,254 chrXII 687646 . G A 340 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=21.25;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,16:16:33:373,33,0 chrXII 687662 . T C 360 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=24.00;SB=-1.590e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:36:393,36,0 chrXII 687735 . T A 452 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=30.13;SB=-1.640e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:45:485,45,0 chrXII 687769 . G T 347 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.44;MQ0=0;QD=26.69;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:36:380,36,0 chrXII 687807 . A T 386 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=29.69;SB=-1.919e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:39:419,39,0 chrXII 687816 . G A 391 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=27.93;SB=-2.269e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:424,39,0 chrXII 687963 . C A 34.77 filter AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.04;MQ0=0;QD=1.58;SB=-1.008e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:6:66,6,0 chrXII 687973 . A C 252.01 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.53;MQ0=0;QD=8.40;SB=-2.860e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:27:285,27,0 chrXII 688077 . G A 1199 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.69;MQ0=0;QD=26.07;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1232,114,0 chrXII 688146 . T C 1268 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.13;MQ0=0;QD=29.49;SB=-2.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1301,120,0 chrXII 688227 . C A 839 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.84;MQ0=0;QD=29.96;SB=-9.701e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:81:872,81,0 chrXII 688237 . T G 751 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.56;MQ0=0;QD=27.81;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:72:784,72,0 chrXII 688246 . C A 747 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.25;MQ0=0;QD=28.73;SB=-1.330e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:780,72,0 chrXII 688263 . T A 806 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.20;MQ0=0;QD=27.79;SB=-1.970e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:839,78,0 chrXII 688265 . G A 812 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.28;MQ0=0;QD=28.00;SB=-2.300e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:78:845,78,0 chrXII 688326 . T C 576 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=28.80;SB=-2.590e+02 GT:AD:DP:GQ:PL 1/1:1,19:20:57:609,57,0 chrXII 688347 . C T 786 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=29.11;SB=-2.630e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:75:819,75,0 chrXII 688417 . C T 687 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.91;MQ0=0;QD=27.48;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:66:720,66,0 chrXII 688424 . C G 731 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.17;MQ0=0;QD=21.50;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:72:764,72,0 chrXII 688445 . C G 1265 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=29.42;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1298,120,0 chrXII 688464 . G A 1198 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=31.53;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1231,111,0 chrXII 688522 . C T 1628 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=30.15;SB=-1.960e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1661,153,0 chrXII 688604 . T C 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;MQRankSum=0.650;QD=28.52;ReadPosRankSum=-0.217;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1402,129,0 chrXII 688606 . T A 1360 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.075;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;MQRankSum=0.452;QD=29.57;ReadPosRankSum=-0.151;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1393,126,0 chrXII 688733 . T C 1797 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=29.46;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1830,171,0 chrXII 688772 . T C 1149 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=30.24;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1182,111,0 chrXII 688789 . C T 1321 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=26.96;SB=-1.930e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1354,123,0 chrXII 688902 . G A 988 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.87;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:93:1021,93,0 chrXII 688961 . C T 1046 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.70;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:99:1079,99,0 chrXII 689147 . G A 1842 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=29.24;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1875,171,0 chrXII 689157 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=29.34;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1911,177,0 chrXII 689216 . G T 1615 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=29.91;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1648,150,0 chrXII 689323 . A G 1527 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=27.76;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1560,147,0 chrXII 689355 . T G 1269 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.547;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;MQRankSum=0.742;QD=22.66;ReadPosRankSum=1.609;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1302,147,0 chrXII 689357 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.8947;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=22.80;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1310,147,0 chrXII 689502 . G C 1197 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.54;MQ0=0;QD=29.20;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1230,114,0 chrXII 689510 . G A 1115 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=28.59;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1148,105,0 chrXII 689527 . A G 1009 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=28.83;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1042,99,0 chrXII 689587 . T C 1200 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.00;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1233,114,0 chrXII 689626 . T C 1507 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.91;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1540,147,0 chrXII 689719 . G A 1626 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.27;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1659,150,0 chrXII 689793 . A G 906 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.65;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:939,90,0 chrXII 689916 . C T 1176 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.95;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1209,111,0 chrXII 689941 . T C 1281 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=29.11;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1314,126,0 chrXII 689955 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=28.28;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1334,120,0 chrXII 690085 . T A 1508 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=31.42;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1541,141,0 chrXII 690162 . T C 1490 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=29.22;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1523,147,0 chrXII 690280 . A G 1621 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=29.47;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1654,156,0 chrXII 690475 . C T 1397 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=30.37;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1430,132,0 chrXII 690479 . C T 1401 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.86;MQ0=0;QD=30.46;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1434,129,0 chrXII 690497 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=29.29;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1468,138,0 chrXII 690766 . C T 1587 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=30.52;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1620,147,0 chrXII 690899 . G A 1563 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.90;SB=-4.260e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1596,147,0 chrXII 691332 . A T 1957 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.36;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1990,183,0 chrXII 691542 . T C 2026 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=30.24;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2059,192,0 chrXII 691605 . A G 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=1.675;QD=29.98;ReadPosRankSum=-1.392;SB=-6.430e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1862,174,0 chrXII 691647 . T C 1830 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=30.50;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1863,174,0 chrXII 691716 . C T 1652 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=28.98;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1685,153,0 chrXII 691842 . A G 2100 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=29.58;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2133,199,0 chrXII 691866 . A G 2175 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.21;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2208,208,0 chrXII 692160 . C T 1688 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=30.14;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1721,159,0 chrXII 692181 . T C 1616 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=29.38;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1649,153,0 chrXII 692970 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=28.18;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1273,117,0 chrXII 693006 . A G 1320 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=4.685;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;MQRankSum=1.386;QD=26.40;ReadPosRankSum=0.346;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1353,126,0 chrXII 693579 . A G 1613 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.88;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1646,156,0 chrXII 693756 . G A 1787 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.30;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1820,165,0 chrXII 694010 . G A 593 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.24;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:57:626,57,0 chrXII 694040 . T A 659 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.65;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:692,63,0 chrXII 694104 . T A 1637 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.76;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1670,153,0 chrXII 694194 . T C 1499 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.663;DP=50;Dels=0.00;FS=3.565;HaplotypeScore=4.2658;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;MQRankSum=1.594;QD=29.98;ReadPosRankSum=0.762;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:99:1532,144,0 chrXII 694211 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.40;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1614,147,0 chrXII 694316 . C G 1209 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=28.12;SB=-5.640e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1242,117,0 chrXII 694318 . C T 1117 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=27.24;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1150,105,0 chrXII 694377 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=28.50;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1344,123,0 chrXII 694737 . C T 1960 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=30.15;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1993,183,0 chrXII 694826 . A T 1297 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=28.82;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1330,120,0 chrXII 694841 . T C 1099 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=27.47;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1132,105,0 chrXII 694862 . T C 1043 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.97;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1076,99,0 chrXII 694939 . A G 1118 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=24.84;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1151,108,0 chrXII 694951 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=27.77;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1255,117,0 chrXII 694982 . C T 1349 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=29.33;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1382,126,0 chrXII 694995 . T G 1251 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=29.09;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1284,120,0 chrXII 695163 . A G 1562 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.04;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1595,153,0 chrXII 696350 . A G 1520 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.15;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1553,144,0 chrXII 696449 . G A 2017 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=30.56;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2050,186,0 chrXII 696795 . A G 1749 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.15;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1782,171,0 chrXII 696844 . C T 1455 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.31;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1488,138,0 chrXII 696990 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.76;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1730,162,0 chrXII 697086 . G A 2138 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.89;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2171,199,0 chrXII 698705 . T C 2009 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=26.79;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2042,198,0 chrXII 698944 . G A 1913 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=30.37;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1946,177,0 chrXII 699067 . C T 1973 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.01;SB=-1.082e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2006,183,0 chrXII 699130 . A G 1609 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.80;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1642,153,0 chrXII 699705 . T C 1436 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=58.01;MQ0=0;QD=30.55;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1469,138,0 chrXII 699817 . G C 1253 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.10;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1286,120,0 chrXII 699895 . C T 964 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=29.21;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:997,93,0 chrXII 700764 . C T 1544 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=31.51;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1577,144,0 chrXII 701218 . T C 1479 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=29.00;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1512,144,0 chrXII 701247 . A G 1552 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=30.43;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1585,150,0 chrXII 701265 . A G 1640 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.9087;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=29.82;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1673,156,0 chrXII 701320 . T C 1437 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.74;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1470,138,0 chrXII 701704 . T C 1647 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.89;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1680,159,0 chrXII 701793 . A T 1503 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.90;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1536,141,0 chrXII 702363 . G A 1687 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.24;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1720,156,0 chrXII 702384 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.13;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1635,153,0 chrXII 702585 . C G 1129 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=30.51;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1162,108,0 chrXII 702786 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.2416;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.54;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1835,171,0 chrXII 702788 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.4530;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.51;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1833,168,0 chrXII 702990 . T C 852 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=2.9805;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=21.85;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,36:39:87:885,87,0 chrXII 703275 . T G 1978 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.6562;MLEAC=2;MLEAF=1.00;MQ=58.69;MQ0=0;QD=27.86;SB=-9.650e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2011,195,0 chrXII 703329 . G C 1435 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=28.70;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1468,141,0 chrXII 703527 . C T 1172 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=27.26;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1205,114,0 chrXII 703539 . T A 1168 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=29.20;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1201,111,0 chrXII 703572 . G A 1058 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=27.84;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1091,99,0 chrXII 703659 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=29.81;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1613,150,0 chrXII 704656 . G A 1800 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.51;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1833,171,0 chrXII 704793 . A G 1038 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.32;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1071,102,0 chrXII 704929 . C T 1539 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.50;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1572,144,0 chrXII 705704 . A G 115.13 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=1.92;SB=-9.051e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:18:148,18,0 chrXII 705705 . G A 115.13 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=1.99;SB=-9.161e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:18:148,18,0 chrXII 706112 . T C 1795 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=25.64;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1828,168,0 chrXII 706444 . A G 1545 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.71;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1578,147,0 chrXII 706747 . G A 1668 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=29.79;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1701,156,0 chrXII 706756 . T C 1611 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.03;MQ0=0;QD=29.83;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1644,156,0 chrXII 706780 . A G 1163 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=29.82;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1196,111,0 chrXII 706789 . A G 1085 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=0;QD=31.00;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1118,105,0 chrXII 706807 . G A 1127 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=32.20;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1160,105,0 chrXII 706906 . T C 1397 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=31.04;SB=-6.710e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1430,135,0 chrXII 706966 . C T 1451 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=30.23;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1484,138,0 chrXII 706978 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=27.16;SB=-7.350e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1391,132,0 chrXII 707020 . T C 2010 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=28.71;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2043,189,0 chrXII 707098 . T C 2413 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=29.07;SB=-1.224e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2446,229,0 chrXII 707238 . C T 1487 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.11;MQ0=0;QD=30.35;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1520,141,0 chrXII 707302 . C T 1063 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=25.31;SB=-3.630e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1096,102,0 chrXII 707305 . T C 1018 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.03;MQ0=0;QD=24.24;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1051,99,0 chrXII 707318 . A G 1026 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.01;MQ0=0;QD=27.73;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1059,99,0 chrXII 707644 . A G 1583 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=28.78;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1616,153,0 chrXII 707772 . G C 1549 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=28.69;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1582,147,0 chrXII 708185 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=31.86;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1403,129,0 chrXII 708261 . T C 1649 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.53;MQ0=0;QD=28.93;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1682,159,0 chrXII 708276 . T G 1787 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=29.78;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1820,171,0 chrXII 708383 . A T 1065 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.98;MQ0=0;QD=27.31;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:1098,102,0 chrXII 708425 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=28.79;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2135,193,0 chrXII 708595 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=29.91;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1409,129,0 chrXII 708755 . G T 1067 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.72;MQ0=0;QD=26.67;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1100,102,0 chrXII 708796 . C T 1313 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=27.35;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1346,126,0 chrXII 708814 . A T 1243 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.52;MQ0=0;QD=25.90;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1276,117,0 chrXII 708837 . T G 1266 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.77;MQ0=0;QD=27.52;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1299,120,0 chrXII 708840 . G A 1252 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=27.82;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1285,117,0 chrXII 708942 . A C 1120 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=30.27;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1153,108,0 chrXII 708955 . C T 1020 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=30.91;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1053,96,0 chrXII 709063 . A T 776 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.30;MQ0=0;QD=25.03;SB=-3.190e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:75:809,75,0 chrXII 709099 . T C 1091 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=22.73;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1124,105,0 chrXII 709102 . T A 1126 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.07;MQ0=0;QD=30.43;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1159,105,0 chrXII 709175 . G C 1126 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.181;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;MQRankSum=-1.417;QD=25.59;ReadPosRankSum=-1.102;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:84:1159,84,0 chrXII 709384 . A G 1137 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.564;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.38;MQ0=0;MQRankSum=-1.310;QD=27.73;ReadPosRankSum=0.380;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:89:1170,89,0 chrXII 709879 . G A 1834 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=31.62;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1867,168,0 chrXII 709888 . T C 1684 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=29.03;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1717,159,0 chrXII 710056 . T C 1578 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=28.18;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1611,153,0 chrXII 710068 . C A 1662 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=29.68;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1695,153,0 chrXII 710090 . A G 1570 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=28.55;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1603,153,0 chrXII 710116 . A G 1850 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=30.33;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1883,174,0 chrXII 710157 . A G 1562 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7256;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=30.63;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1595,150,0 chrXII 710161 . A G 1576 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;MQRankSum=0.600;QD=30.31;ReadPosRankSum=1.333;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1609,153,0 chrXII 710167 . G A 1594 SnpCluster AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=31.88;SB=-3.230e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1627,150,0 chrXII 710215 . G A 993 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=29.21;SB=-3.780e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1026,96,0 chrXII 710283 . T G 1658 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.70;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1691,159,0 chrXII 710358 . T G 2003 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=30.35;SB=-9.970e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2036,186,0 chrXII 710493 . A T 2403 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=30.04;SB=-1.221e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2436,223,0 chrXII 710635 . C T 1130 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=28.97;SB=-2.930e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1163,108,0 chrXII 710704 . G A 851 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=26.59;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:884,81,0 chrXII 710709 . G A 933 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.03;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=24.55;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:966,93,0 chrXII 710871 . G A 1949 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=30.45;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1982,180,0 chrXII 710894 . C G 2382 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=29.77;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2415,229,0 chrXII 711045 . T G 1694 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=28.23;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1727,162,0 chrXII 711058 . T C 1065 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.2931;MLEAC=2;MLEAF=1.00;MQ=56.89;MQ0=0;QD=28.03;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1098,105,0 chrXII 711067 . C T 1297 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=30.16;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1330,126,0 chrXII 711312 . C T 896 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=30.90;SB=-4.240e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:929,84,0 chrXII 711337 . A G 756 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=29.08;SB=-3.020e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:75:789,75,0 chrXII 711354 . G T 816 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=31.38;SB=-3.930e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:78:849,78,0 chrXII 711432 . C T 726 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=20.17;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:759,72,0 chrXII 711837 . T G 1348 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.155;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.083;QD=28.08;ReadPosRankSum=1.444;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1381,104,0 chrXII 712040 . C T 1878 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.3990;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=27.22;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1911,174,0 chrXII 712134 . T C 1231 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=25.65;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1264,117,0 chrXII 712302 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=27.41;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1376,129,0 chrXII 712581 . C T 1322 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=27.54;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1355,123,0 chrXII 712942 . T C 1349 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.26;MQ0=0;QD=29.98;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1382,132,0 chrXII 712958 . C T 1218 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.20;MQ0=0;QD=29.00;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1251,117,0 chrXII 712973 . T C 1174 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.17;MQ0=0;QD=27.30;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1207,114,0 chrXII 712990 . A C 906 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.77;MQ0=0;QD=25.89;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:939,93,0 chrXII 713059 . C T 690 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.36;MQ0=0;QD=20.29;SB=-2.950e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:66:723,66,0 chrXII 713068 . T A 679 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.03;MQ0=0;QD=21.22;SB=-2.600e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:66:712,66,0 chrXII 713180 . G T 933 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=27.44;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:966,90,0 chrXII 713420 . C G 1367 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=26.80;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1400,132,0 chrXII 713479 . T C 1408 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=26.57;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1441,135,0 chrXII 713507 . A G 1365 SnpCluster AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=25.75;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1398,132,0 chrXII 713513 . G A 1111 SnpCluster AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=19.49;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1144,108,0 chrXII 713516 . T C 1011 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=41.84;MQ0=0;QD=18.72;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1044,99,0 chrXII 713543 . A C 918 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=41.74;MQ0=0;QD=17.65;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:90:951,90,0 chrXII 713644 . A G 1338 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.62;MQ0=0;QD=27.31;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1371,132,0 chrXII 713693 . G C 1306 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=28.39;SB=-6.670e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1339,126,0 chrXII 713843 . T C 1491 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=28.13;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1524,141,0 chrXII 714002 . G A 1183 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=28.85;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1216,111,0 chrXII 714020 . G A 1234 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=30.85;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1267,114,0 chrXII 714062 . A G 1629 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=28.58;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1662,156,0 chrXII 714134 . A G 1863 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.47;MQ0=0;QD=28.66;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1896,180,0 chrXII 714158 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=27.54;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1575,147,0 chrXII 714185 . G A 1580 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.27;MQ0=0;QD=29.26;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1613,147,0 chrXII 714200 . C T 1609 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=30.36;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1642,153,0 chrXII 714302 . G A 2068 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=29.97;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2101,192,0 chrXII 714320 . G T 1933 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.07;MQ0=0;QD=28.43;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1966,177,0 chrXII 714379 . T C 1906 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=27.23;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1939,180,0 chrXII 714407 . A G 1239 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=23.38;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1272,120,0 chrXII 714439 . G A 1450 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=29.59;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1483,138,0 chrXII 714546 . G A 1325 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=29.44;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1358,123,0 chrXII 714587 . C T 1419 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=28.96;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1452,132,0 chrXII 714641 . G A 1967 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.36;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2000,183,0 chrXII 714966 . G C 1291 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=28.69;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1324,123,0 chrXII 715054 . G A 1359 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=25.64;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1392,126,0 chrXII 715068 . G A 1690 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=28.64;SB=-4.010e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1723,156,0 chrXII 715073 . C A 1751 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=26.94;SB=-3.640e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1784,165,0 chrXII 715235 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.47;SB=-7.800e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1922,177,0 chrXII 715595 . A G 1437 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.94;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1470,138,0 chrXII 715622 . A C 1602 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.23;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1635,156,0 chrXII 715772 . G T 1971 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=29.42;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2004,186,0 chrXII 715867 . C T 1672 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=28.83;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1705,156,0 chrXII 715886 . G A 1709 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=28.02;SB=-9.180e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1742,159,0 chrXII 715955 . C T 1460 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.42;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1493,135,0 chrXII 715982 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.85;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1466,135,0 chrXII 716177 . C T 1315 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.22;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1348,123,0 chrXII 716369 . G A 1265 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.35;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1298,120,0 chrXII 716594 . T C 1210 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.51;SB=-2.720e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1243,117,0 chrXII 716777 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.65;SB=-6.760e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1535,141,0 chrXII 716852 . A C 1577 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=30.33;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1610,153,0 chrXII 717136 . G A 959 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.67;MQ0=1;QD=25.92;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:992,90,0 chrXII 717181 . T C 1163 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.07;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1196,111,0 chrXII 717475 . G A 1132 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.95;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1165,105,0 chrXII 717529 . C T 1170 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.79;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1203,111,0 chrXII 717712 . A G 1050 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.38;SB=-3.770e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1083,102,0 chrXII 717897 . G T 1267 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.90;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1300,120,0 chrXII 717949 . G C 985 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.97;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1018,96,0 chrXII 717952 . T C 994 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.40;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1027,96,0 chrXII 718104 . G A 607 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=15.5389;MLEAC=2;MLEAF=1.00;MQ=56.33;MQ0=0;QD=24.28;SB=-2.370e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:60:640,60,0 chrXII 718154 . A G 521 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.96;MQ0=0;QD=13.71;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:54:554,54,0 chrXII 718211 . G A 829 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.61;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:78:862,78,0 chrXII 718266 . A G 898 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.93;SB=-3.530e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:87:931,87,0 chrXII 718278 . T A 930 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=28.18;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:963,87,0 chrXII 718479 . T C 1017 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=29.06;SB=-4.200e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1050,99,0 chrXII 718515 . A G 1298 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=27.62;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1331,126,0 chrXII 718521 . T C 1288 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=27.40;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1321,120,0 chrXII 718593 . G A 1261 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=26.83;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1294,117,0 chrXII 718821 . T C 1587 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=28.34;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1620,153,0 chrXII 718896 . G A 1422 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.02;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1455,132,0 chrXII 719036 . T C 1525 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.73;SB=-8.270e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1558,147,0 chrXII 719106 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.49;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1710,156,0 chrXII 719400 . G A 1713 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.72;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1746,159,0 chrXII 719436 . T C 1911 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.33;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1944,183,0 chrXII 719509 . T C 1607 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=30.90;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1640,153,0 chrXII 719618 . A G 1679 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.14;MQ0=0;QD=21.53;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1712,162,0 chrXII 719858 . T G 1375 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=28.06;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1408,135,0 chrXII 719910 . C T 1374 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.04;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1407,132,0 chrXII 720011 . T C 2081 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=30.60;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2114,195,0 chrXII 720526 . T A 1573 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=30.84;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1606,144,0 chrXII 720539 . G A 1586 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=29.37;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1619,144,0 chrXII 720586 . C T 1226 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=29.19;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1259,114,0 chrXII 721257 . G A 1125 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.79;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1158,105,0 chrXII 721788 . C T 1764 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.621;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.112;QD=28.00;ReadPosRankSum=-0.615;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1797,165,0 chrXII 721983 . G A 624 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=18.35;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:57:657,57,0 chrXII 721984 . G A 628 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=19.03;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:57:661,57,0 chrXII 722023 . A G 766 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=25.53;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:799,75,0 chrXII 722079 . A T 1509 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.8300;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=25.15;SB=-9.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1542,141,0 chrXII 722344 . C G 2054 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=29.34;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2087,192,0 chrXII 722380 . T C 2157 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=29.96;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2190,205,0 chrXII 722447 . T C 1677 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=29.42;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1710,162,0 chrXII 722471 . T A 2217 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=29.56;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2250,211,0 chrXII 722507 . G A 1498 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=25.39;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1531,147,0 chrXII 722593 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=29.45;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1918,180,0 chrXII 722617 . A G 1952 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=28.29;SB=-9.570e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1985,192,0 chrXII 722657 . G T 2147 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=30.67;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2180,202,0 chrXII 722699 . G A 2116 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=28.21;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2149,195,0 chrXII 722745 . C G 1518 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;QD=27.60;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1551,147,0 chrXII 722850 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=19.16;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1144,108,0 chrXII 723252 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.63;MQ0=0;QD=23.32;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:1059,96,0 chrXII 723283 . G C 1425 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.17;MQ0=0;QD=28.50;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1458,135,0 chrXII 723290 . A G 1378 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.80;MQ0=0;QD=26.50;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1411,132,0 chrXII 723319 . T G 1909 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.34;MQ0=0;QD=27.67;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1942,183,0 chrXII 723329 . A G 1665 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.358;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.96;MQ0=0;MQRankSum=-0.826;QD=25.62;ReadPosRankSum=-0.720;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1698,146,0 chrXII 723330 . A G 1691 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=26.42;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1724,165,0 chrXII 723342 . C T 1631 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.21;MQ0=0;QD=26.74;SB=-9.700e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1664,153,0 chrXII 723355 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.69;MQ0=0;QD=26.33;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1797,171,0 chrXII 723463 . T C 1832 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=26.55;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1865,177,0 chrXII 723618 . T G 1477 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=28.96;SB=-1.920e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1510,144,0 chrXII 723739 . T C 1852 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=26.08;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:1885,177,0 chrXII 723998 . C A 1583 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9979;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=28.78;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1616,147,0 chrXII 724228 . C G 774 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.80;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:78:807,78,0 chrXII 724534 . A G 1010 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.28;MQ0=0;QD=26.58;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1043,99,0 chrXII 724901 . C T 2300 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=30.67;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2333,214,0 chrXII 725538 . C T 1422 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.85;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1455,135,0 chrXII 725542 . A G 1375 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=25.00;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1408,132,0 chrXII 725578 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=24.72;SB=-7.580e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1368,132,0 chrXII 725584 . G C 1359 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=24.71;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1392,132,0 chrXII 725693 . A T 1021 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=30.03;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1054,96,0 chrXII 725936 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=31.41;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1321,120,0 chrXII 726025 . A G 802 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.64;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:81:835,81,0 chrXII 726161 . C G 2207 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=29.43;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,74:75:99:2240,216,0 chrXII 726449 . G A 1435 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.53;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1468,135,0 chrXII 726580 . A G 1387 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.31;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1420,138,0 chrXII 726848 . A G 1601 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=28.59;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1634,156,0 chrXII 727094 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=29.04;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1456,132,0 chrXII 727106 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=27.31;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:52:99:1453,135,0 chrXII 727328 . A G 1382 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.64;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1415,132,0 chrXII 727454 . C T 1194 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.62;SB=-2.260e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1227,114,0 chrXII 727539 . T C 1004 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9916;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=26.42;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1037,96,0 chrXII 727549 . G A 1008 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=29.65;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:1041,93,0 chrXII 728027 . A G 955 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.13;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:988,93,0 chrXII 728082 . G A 1026 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.50;SB=-3.960e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1059,96,0 chrXII 728501 . G A 1504 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=29.49;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1537,144,0 chrXII 729938 . C T 1332 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=30.27;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1365,126,0 chrXII 729962 . T C 1324 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=27.58;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1357,132,0 chrXII 730685 . C T 1126 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=26.81;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1159,105,0 chrXII 730719 . C A 1104 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=26.93;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1137,102,0 chrXII 730778 . G A 1380 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=28.16;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1413,126,0 chrXII 731012 . C T 1774 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=30.07;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1807,165,0 chrXII 731827 . G A 280.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.576;DP=31;Dels=0.00;FS=78.896;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.53;MQ0=1;MQRankSum=-0.083;QD=9.03;ReadPosRankSum=-2.903;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:16,15:31:99:310,0,285 chrXII 733837 . G A 1290.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.377;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=-0.180;QD=11.52;ReadPosRankSum=-2.782;SB=-7.240e+02 GT:AD:DP:GQ:PL 0/1:57,55:112:99:1320,0,1414 chrXII 734157 . A T 3272.01 PASS AC=2;AF=1.00;AN=2;DP=112;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.95;MQ0=0;QD=29.21;SB=-1.501e+03 GT:AD:DP:GQ:PL 1/1:0,112:112:99:3272,301,0 chrXII 734456 . C T 1418.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.049;DP=95;Dels=0.00;FS=25.884;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=58.77;MQ0=0;MQRankSum=0.770;QD=14.93;ReadPosRankSum=0.582;SB=-5.230e+02 GT:AD:DP:GQ:PL 0/1:41,54:95:99:1448,0,1002 chrXII 734603 . G A 478.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=7.218;DP=81;Dels=0.00;FS=56.932;HaplotypeScore=2.9926;MLEAC=1;MLEAF=0.500;MQ=54.46;MQ0=0;MQRankSum=-2.199;QD=5.90;ReadPosRankSum=-4.634;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,27:81:99:508,0,1338 chrXII 734608 . C A 171.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.621;DP=69;Dels=0.00;FS=30.247;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.18;MQ0=0;MQRankSum=-5.517;QD=2.48;ReadPosRankSum=-2.862;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,13:69:99:201,0,1514 chrXII 734612 . T G 72.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.845;DP=65;Dels=0.00;FS=24.338;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=54.97;MQ0=0;MQRankSum=-5.009;QD=1.11;ReadPosRankSum=-3.573;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,10:65:99:102,0,1513 chrXII 736154 . G A 1517 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=27.09;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1550,141,0 chrXII 736352 . A G 1436 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.075;DP=58;Dels=0.00;FS=3.321;HaplotypeScore=5.0515;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=-1.493;QD=24.76;ReadPosRankSum=0.239;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1469,115,0 chrXII 736586 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=27.92;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:2015,183,0 chrXII 736739 . G A 1327 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.424;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;MQRankSum=-1.193;QD=29.49;ReadPosRankSum=1.424;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:98:1360,98,0 chrXII 736757 . G A 1515 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.532;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=1.532;QD=29.13;ReadPosRankSum=0.466;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1548,116,0 chrXII 737570 . G A 2239 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=29.46;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2272,205,0 chrXII 738097 . G C 1642 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.83;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1675,156,0 chrXII 738125 . T C 1536 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.98;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1569,150,0 chrXII 738353 . A G 1018 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=26.79;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1051,99,0 chrXII 738992 . C T 1241 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.40;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1274,117,0 chrXII 739051 . T C 1142 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=27.85;SB=-5.470e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1175,111,0 chrXII 739067 . A G 1195 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=29.15;SB=-4.550e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1228,117,0 chrXII 739184 . C T 1055 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=28.51;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1088,99,0 chrXII 739411 . A G 1741 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.51;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1774,165,0 chrXII 739624 . T C 1761 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;QD=29.85;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1794,168,0 chrXII 739958 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.93;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1394,126,0 chrXII 740250 . C G 1951 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=28.28;SB=-1.080e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1984,183,0 chrXII 740405 . G A 1236 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.039;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;MQRankSum=0.577;QD=27.47;ReadPosRankSum=0.115;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:90:1269,90,0 chrXII 740813 . A G 686 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.58;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:69:719,69,0 chrXII 741116 . C T 1197 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.92;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1230,111,0 chrXII 741197 . T C 1828 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.7008;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=29.02;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1861,177,0 chrXII 741422 . G A 1275 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=27.72;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1308,120,0 chrXII 741983 . G A 1445 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1478,135,0 chrXII 742073 . T G 676 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.386;DP=30;Dels=0.00;FS=5.229;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;MQRankSum=1.502;QD=22.53;ReadPosRankSum=-0.347;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:1,29:30:42:709,42,0 chrXII 742088 . T C 772 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.614;DP=29;Dels=0.00;FS=4.624;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.494;QD=26.62;ReadPosRankSum=0.538;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:1,28:29:52:805,52,0 chrXII 742174 . C T 1944 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=30.37;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1977,180,0 chrXII 742199 . A G 1866 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=28.71;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1899,177,0 chrXII 742202 . T C 1935 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=29.77;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1968,180,0 chrXII 742352 . G A 1991 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=28.86;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2024,180,0 chrXII 742787 . T C 1335 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=29.67;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1368,126,0 chrXII 742979 . A G 1566 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=23.03;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1599,150,0 chrXII 743013 . T A 1845 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=30.25;SB=-9.100e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1878,171,0 chrXII 743135 . A G 1822 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=29.87;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1855,174,0 chrXII 743183 . G A 2132 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=31.35;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2165,202,0 chrXII 743189 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.85;MQ0=0;QD=27.57;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1963,180,0 chrXII 743204 . A G 1814 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.15;MQ0=0;QD=29.26;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1847,180,0 chrXII 743763 . C T 3544.01 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.09;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3544,322,0 chrXII 743917 . A T 915 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=28.59;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:948,87,0 chrXII 744124 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.94;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1451,135,0 chrXII 744207 . G A 2545 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=30.66;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2578,235,0 chrXII 744416 . A G 1713 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.83;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1746,165,0 chrXII 744446 . T C 1721 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.35;SB=-1.124e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1754,165,0 chrXII 744566 . A T 1155 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.08;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1188,108,0 chrXII 744885 . T A 1348 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=30.64;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1381,126,0 chrXII 744923 . C A 1365 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.76;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1398,129,0 chrXII 745421 . C A 1570 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=31.40;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1603,147,0 chrXII 745460 . A G 1125 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=29.61;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1158,108,0 chrXII 745464 . G A 1235 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=31.67;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1268,114,0 chrXII 745552 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.16;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1641,150,0 chrXII 745609 . C G 1384 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=2.7122;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=28.83;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1417,132,0 chrXII 745660 . C G 1975 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=30.38;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2008,186,0 chrXII 745671 . A G 2008 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=30.42;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2041,189,0 chrXII 745706 . C T 2372 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=30.41;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2405,223,0 chrXII 746036 . G A 1334 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=28.38;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1367,123,0 chrXII 746372 . T A 1352 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=28.77;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1385,126,0 chrXII 746382 . A G 1255 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=27.28;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1288,120,0 chrXII 746872 . A G 1886 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=29.47;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1919,186,0 chrXII 747358 . C T 1869 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.12;MQ0=0;QD=29.20;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1902,174,0 chrXII 747374 . T C 1929 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.9874;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=26.07;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:1962,183,0 chrXII 747505 . T C 1636 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.73;MQ0=0;QD=29.75;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1669,159,0 chrXII 747529 . G T 1192 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=30.56;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1225,114,0 chrXII 747808 . G A 2210 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=55.49;MQ0=0;QD=30.69;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2243,205,0 chrXII 747813 . A G 1962 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=62.8162;MLEAC=2;MLEAF=1.00;MQ=54.39;MQ0=0;QD=29.28;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1995,186,0 chrXII 747817 . T C 1879 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=63.8145;MLEAC=2;MLEAF=1.00;MQ=54.01;MQ0=0;QD=28.04;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1912,177,0 chrXII 747877 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=30.60;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1777,162,0 chrXII 747900 . A C 1848 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=53.98;MQ0=0;QD=28.87;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1881,174,0 chrXII 747929 . A G 1748 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=3.0313;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=27.75;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1781,171,0 chrXII 747982 . C T 1728 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.32;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1761,162,0 chrXII 748236 . G A 2039 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=31.37;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2072,190,0 chrXII 748299 . C T 1848 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=31.32;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1881,171,0 chrXII 748362 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=30.16;SB=-9.590e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1873,174,0 chrXII 748416 . A T 1761 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.36;SB=-9.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1794,165,0 chrXII 748497 . T A 2197 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=30.94;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2230,208,0 chrXII 748572 . A G 1820 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=28.89;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1853,177,0 chrXII 748731 . A G 1057 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=28.57;SB=-5.430e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1090,105,0 chrXII 748735 . A T 1116 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=28.62;SB=-5.560e+02 GT:AD:DP:GQ:PL 1/1:0,38:39:99:1149,105,0 chrXII 749136 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.57;MQ0=0;QD=28.88;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2199,205,0 chrXII 749273 . T C 2426 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=29.95;SB=-1.219e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2459,232,0 chrXII 749284 . C G 2446 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=30.20;SB=-1.270e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2479,235,0 chrXII 749546 . T G 1756 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.528;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=5.3440;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;MQRankSum=0.408;QD=25.82;ReadPosRankSum=1.121;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1789,180,0 chrXII 749673 . G C 1746 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.10;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1779,165,0 chrXII 749793 . A G 1643 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=2.3639;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=24.52;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1676,156,0 chrXII 749934 . A G 1870 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.5731;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.68;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1903,180,0 chrXII 750324 . G A 2616 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=30.42;SB=-1.180e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2649,244,0 chrXII 750485 . G A 2102 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.19;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2135,196,0 chrXII 750621 . C T 1783 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;QD=30.22;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1816,165,0 chrXII 750669 . T C 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;MQRankSum=1.669;QD=27.07;ReadPosRankSum=-0.157;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1522,117,0 chrXII 750942 . C T 2074 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=28.81;SB=-1.041e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2107,193,0 chrXII 750944 . C T 2087 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=28.99;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2120,193,0 chrXII 750988 . C T 1502 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.599;QD=28.88;ReadPosRankSum=1.666;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1535,141,0 chrXII 751142 . G A 1775 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;MQRankSum=1.263;QD=30.08;ReadPosRankSum=-0.206;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1808,141,0 chrXII 751398 . C T 1348 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.35;SB=-2.290e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1381,126,0 chrXII 751824 . C T 1191 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=30.54;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1224,111,0 chrXII 751827 . A G 1146 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=30.16;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1179,111,0 chrXII 751890 . G A 1574 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.70;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1607,147,0 chrXII 752103 . C A 1802 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.60;SB=-7.570e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1835,171,0 chrXII 752118 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=29.01;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2064,190,0 chrXII 752258 . C T 1016 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.74;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1049,96,0 chrXII 752259 . C T 1009 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.87;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:96:1042,96,0 chrXII 752593 . T C 1424 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.550;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.577;QD=24.98;ReadPosRankSum=0.091;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1457,115,0 chrXII 753079 . G A 2057 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.18;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,71:73:99:2090,189,0 chrXII 753525 . T C 2063 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=29.06;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:2096,201,0 chrXII 753571 . C T 1719 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.73;SB=-6.510e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1752,162,0 chrXII 754314 . A G 1876 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=24.05;SB=-1.094e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1909,177,0 chrXII 754377 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5628;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=27.57;SB=-8.420e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1494,138,0 chrXII 754389 . G A 1433 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5929;MLEAC=2;MLEAF=1.00;MQ=58.65;MQ0=0;QD=26.05;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1466,135,0 chrXII 754651 . G A 2277 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.36;SB=-1.168e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2310,214,0 chrXII 754945 . T C 1697 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.49;MQ0=0;QD=28.28;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1730,162,0 chrXII 754978 . A G 1453 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.034;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;MQRankSum=1.529;QD=28.49;ReadPosRankSum=1.325;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:1,50:51:99:1486,135,0 chrXII 755191 . A G 2299 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=2.6432;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=26.73;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,85:86:99:2332,220,0 chrXII 755553 . C T 1583 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.472;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.147;QD=28.78;ReadPosRankSum=-0.967;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:2,53:55:99:1616,109,0 chrXII 755890 . C T 1637 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=29.23;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1670,153,0 chrXII 755941 . A G 1740 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.19;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1773,168,0 chrXII 755968 . C T 1837 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=29.16;SB=-8.810e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1870,171,0 chrXII 756137 . C T 1743 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=29.05;SB=-8.750e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1776,165,0 chrXII 756158 . T C 1186 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=26.95;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1219,114,0 chrXII 756553 . T G 1495 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=28.75;SB=-7.660e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1528,144,0 chrXII 756805 . T A 1178 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=29.45;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1211,111,0 chrXII 757068 . T C 1481 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.58;MQ0=0;QD=30.22;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1514,141,0 chrXII 757090 . A G 1049 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=23.84;SB=-4.610e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1082,102,0 chrXII 757131 . A G 854 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=5.2943;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=28.47;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:84:887,84,0 chrXII 757367 . A G 1189 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.95;MQ0=0;QD=27.02;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1222,114,0 chrXII 757389 . G A 23.04 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.189;DP=46;Dels=0.00;FS=9.358;HaplotypeScore=86.8275;MLEAC=1;MLEAF=0.500;MQ=43.27;MQ0=0;MQRankSum=1.535;QD=0.50;ReadPosRankSum=-2.397;SB=-1.739e-02 GT:AD:DP:GQ:PL 0/1:44,2:46:23:53,0,23 chrXII 757393 . A G 14.91 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.327;DP=47;Dels=0.00;FS=5.785;HaplotypeScore=85.9117;MLEAC=2;MLEAF=1.00;MQ=43.01;MQ0=0;MQRankSum=0.718;QD=0.32;ReadPosRankSum=-2.763;SB=1.24 GT:AD:DP:GQ:PL 1/1:44,3:47:6:46,6,0 chrXII 757576 . C A 2314 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=51.4243;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=30.05;SB=-4.820e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2347,220,0 chrXII 757763 . C T 1676 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.39;MQ0=0;QD=30.47;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1709,159,0 chrXII 757817 . C G 1309 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.7586;MLEAC=2;MLEAF=1.00;MQ=56.41;MQ0=0;QD=26.71;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1342,123,0 chrXII 758057 . A G 2092 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=27.17;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2125,201,0 chrXII 758099 . T C 1982 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=27.15;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2015,189,0 chrXII 758246 . A G 1589 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=29.43;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1622,156,0 chrXII 758414 . A C 1683 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=26.30;SB=-8.320e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1716,165,0 chrXII 758417 . T C 1742 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=26.80;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1775,168,0 chrXII 758451 . A C 1454 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=24.23;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1487,141,0 chrXII 758455 . T A 1533 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=26.43;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1566,141,0 chrXII 758492 . C G 1625 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9610;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=27.08;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1658,156,0 chrXII 758524 . C T 1835 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.10;SB=-6.850e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1868,171,0 chrXII 758595 . G A 1926 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=31.57;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1959,177,0 chrXII 758754 . G A 1103 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.9962;MLEAC=2;MLEAF=1.00;MQ=57.52;MQ0=0;QD=30.64;SB=-5.500e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1136,105,0 chrXII 758853 . C T 2253 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=30.04;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2286,208,0 chrXII 758959 . A G 1901 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.72;MQ0=0;QD=27.96;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1934,177,0 chrXII 759015 . A G 1126 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=26.19;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1159,108,0 chrXII 759162 . A G 1034 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=28.72;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,35:36:99:1067,99,0 chrXII 759216 . G A 1296 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=29.45;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1329,123,0 chrXII 759268 . A G 1207 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=30.17;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1240,117,0 chrXII 759438 . A G 1653 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.9958;MLEAC=2;MLEAF=1.00;MQ=51.45;MQ0=0;QD=30.05;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1686,159,0 chrXII 759450 . G T 24.09 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.906;DP=59;Dels=0.00;FS=7.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.17;MQ0=0;MQRankSum=1.194;QD=0.41;ReadPosRankSum=2.115;SB=-7.221e+02 GT:AD:DP:GQ:PL 0/1:2,57:59:15:54,0,15 chrXII 759452 . A G 31.08 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.237;DP=58;Dels=0.00;FS=7.412;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=51.00;MQ0=0;MQRankSum=1.342;QD=0.54;ReadPosRankSum=2.280;SB=-6.851e+02 GT:AD:DP:GQ:PL 0/1:2,56:58:15:61,0,15 chrXII 759458 . A C 1749 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.92;MQ0=0;QD=30.16;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1782,168,0 chrXII 759842 . T C 1626 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.97;MQ0=0;QD=27.56;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1659,156,0 chrXII 759860 . T C 1292 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.76;MQ0=0;QD=28.71;SB=-4.370e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1325,126,0 chrXII 759872 . G A 1044 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=29.00;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1077,105,0 chrXII 759887 . G A 1025 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.8154;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=21.35;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1058,102,0 chrXII 759985 . A G 2121 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=29.87;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2154,204,0 chrXII 760390 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=31.10;SB=-8.860e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1868,171,0 chrXII 760396 . G A 2122 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=30.75;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2155,199,0 chrXII 760502 . C A 1511 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=29.63;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1544,141,0 chrXII 760603 . C T 1671 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.15;MQ0=0;QD=28.32;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1704,156,0 chrXII 760610 . A G 1571 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.43;MQ0=0;QD=27.09;SB=-6.820e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1604,150,0 chrXII 760613 . A G 1574 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=26.68;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1607,150,0 chrXII 760615 . T A 1593 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=39.86;MQ0=0;QD=27.00;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1626,150,0 chrXII 760639 . T C 1555 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.20;MQ0=0;QD=26.81;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1588,150,0 chrXII 760652 . C A 1585 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.53;MQ0=0;QD=28.82;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1618,150,0 chrXII 760719 . A T 1424 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.72;MQ0=0;QD=30.30;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1457,135,0 chrXII 761014 . T A 1357 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.78;MQ0=0;QD=22.62;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1390,129,0 chrXII 761052 . C T 1503 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.522;DP=66;Dels=0.00;FS=3.724;HaplotypeScore=1.9952;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;MQRankSum=1.155;QD=22.77;ReadPosRankSum=1.417;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:1536,138,0 chrXII 761145 . C T 1806 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=31.14;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1839,168,0 chrXII 761210 . G A 1241 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=28.86;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1274,117,0 chrXII 761214 . C T 1274 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=27.70;SB=-4.000e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1307,120,0 chrXII 761335 . T C 1607 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.57;MQ0=0;QD=27.71;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1640,159,0 chrXII 761396 . G A 2105 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=27.70;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2138,198,0 chrXII 761425 . C T 2138 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.5494;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=27.77;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2171,201,0 chrXII 761502 . C G 1665 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=28.71;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1698,159,0 chrXII 761602 . C T 2095 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=29.10;SB=-9.440e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2128,193,0 chrXII 761922 . T A 1999 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.680;DP=66;Dels=0.00;FS=3.282;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=0.210;QD=30.29;ReadPosRankSum=1.470;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:2032,183,0 chrXII 762049 . G A 1774 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=29.08;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1807,168,0 chrXII 762058 . T C 1409 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=26.58;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1442,132,0 chrXII 762220 . T G 1441 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.66;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1474,138,0 chrXII 762443 . C A 2137 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=30.53;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2170,199,0 chrXII 762492 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.95;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1799,168,0 chrXII 762817 . G A 1020 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.00;SB=-3.200e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1053,96,0 chrXII 762938 . T C 1489 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-2.406;DP=56;Dels=0.00;FS=3.067;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=-0.640;QD=26.59;ReadPosRankSum=-0.949;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:2,54:56:90:1522,90,0 chrXII 763151 . A G 2176 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;QD=29.41;SB=-7.310e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2209,205,0 chrXII 763199 . C T 2113 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.878;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=2.4424;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;MQRankSum=0.403;QD=28.55;ReadPosRankSum=-1.590;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:1,72:74:99:2146,173,0 chrXII 763214 . G A 2229 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.031;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.12;MQ0=0;MQRankSum=-1.688;QD=28.22;ReadPosRankSum=-1.294;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:2262,182,0 chrXII 763325 . A G 1317 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=28.63;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1350,126,0 chrXII 763412 . T C 1770 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.05;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1803,168,0 chrXII 763502 . T C 1211 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=41;Dels=0.00;FS=3.118;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;MQRankSum=-0.127;QD=29.54;ReadPosRankSum=0.211;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:99:1244,117,0 chrXII 763666 . C A 1577 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.33;SB=-8.290e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1610,147,0 chrXII 763742 . C T 1698 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.7781;MLEAC=2;MLEAF=1.00;MQ=58.59;MQ0=0;QD=30.32;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1731,159,0 chrXII 764339 . A G 1606 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=25.90;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1639,150,0 chrXII 764389 . G T 2256 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=29.30;SB=-9.770e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2289,205,0 chrXII 764398 . A G 2218 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.88;MQ0=0;QD=28.81;SB=-9.140e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2251,208,0 chrXII 764454 . A G 2273 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.31;SB=-1.117e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2306,214,0 chrXII 764481 . T C 1869 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.679;DP=65;Dels=0.00;FS=3.505;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=1.253;QD=28.75;ReadPosRankSum=-1.359;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:1,64:65:99:1902,180,0 chrXII 764614 . A G 1483 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.90;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1516,141,0 chrXII 764623 . T C 1463 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.48;SB=-2.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1496,144,0 chrXII 764781 . A C 1535 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=30.10;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1568,147,0 chrXII 764796 . T A 1567 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=31.34;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1600,147,0 chrXII 765047 . A G 1752 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.1567;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.03;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1785,168,0 chrXII 765566 . A G 1150 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=27.38;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1183,114,0 chrXII 765605 . G A 1438 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=31.26;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1471,138,0 chrXII 765881 . A C 1380 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=30.00;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1413,132,0 chrXII 765920 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.29;MQ0=0;QD=26.10;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1390,132,0 chrXII 765921 . C T 1375 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.23;MQ0=0;QD=26.96;SB=-7.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1408,129,0 chrXII 765944 . A G 1172 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=2.5239;MLEAC=2;MLEAF=1.00;MQ=55.02;MQ0=0;QD=22.11;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,52:53:99:1205,117,0 chrXII 765971 . A G 928 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.09;MQ0=0;QD=20.62;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:90:961,90,0 chrXII 765989 . G A 1004 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=20.92;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:96:1037,96,0 chrXII 766006 . C T 1109 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.65;MQ0=0;QD=24.64;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1142,105,0 chrXII 766039 . C T 1914 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=28.57;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1947,180,0 chrXII 766116 . A T 1725 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=27.82;SB=-3.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1758,162,0 chrXII 766225 . T G 1844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=63;Dels=0.00;FS=5.206;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;MQRankSum=1.622;QD=29.27;ReadPosRankSum=0.962;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:1,62:63:99:1877,177,0 chrXII 766489 . G A 1288 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=11.2606;MLEAC=2;MLEAF=1.00;MQ=57.27;MQ0=0;QD=25.76;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1321,123,0 chrXII 766775 . C T 2127 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=30.39;SB=-1.081e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2160,199,0 chrXII 767243 . G A 1886 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=29.02;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1919,174,0 chrXII 767244 . G A 1901 SnpCluster AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=29.25;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1934,174,0 chrXII 767252 . T G 1833 SnpCluster AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=23.50;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:1866,171,0 chrXII 767369 . G A 2199 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.9730;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=30.97;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2232,202,0 chrXII 767420 . G A 2150 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=30.71;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2183,204,0 chrXII 768100 . T C 1313 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=30.53;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1346,126,0 chrXII 768577 . A G 1452 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.40;SB=-4.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1485,144,0 chrXII 768623 . A G 1076 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.32;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1109,102,0 chrXII 768800 . T C 1707 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=28.93;SB=-8.450e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1740,162,0 chrXII 768836 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.47;SB=-1.007e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2111,196,0 chrXII 769193 . T C 1814 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=30.23;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1847,171,0 chrXII 769226 . T C 2083 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=30.63;SB=-5.590e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2116,198,0 chrXII 769312 . G A 1293 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=28.73;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1326,123,0 chrXII 769460 . C G 1308 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=27.83;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1341,123,0 chrXII 769888 . A G 1242 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=27.00;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1275,120,0 chrXII 770182 . T C 1435 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.20;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1468,135,0 chrXII 770323 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=29.38;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1590,144,0 chrXII 770364 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=31.36;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1601,147,0 chrXII 770488 . T G 1565 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.21;MQ0=0;QD=29.53;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1598,156,0 chrXII 770630 . G A 1244 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.27;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1277,117,0 chrXII 770790 . A G 1514 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=28.57;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1547,144,0 chrXII 770842 . A T 1703 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=27.92;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1736,162,0 chrXII 770846 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.47;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1801,165,0 chrXII 770890 . T A 1380 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=30.00;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1413,129,0 chrXII 774720 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=26.28;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1925,177,0 chrXII 774798 . C T 1733 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.88;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1766,162,0 chrXII 774849 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=26.00;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1255,117,0 chrXII 775104 . T C 1162 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.79;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1195,111,0 chrXII 775524 . C T 986 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=29.88;SB=-3.320e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:1019,93,0 chrXII 775537 . C T 1022 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=30.06;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:99:1055,99,0 chrXII 784820 . C G 1876 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.80;SB=-9.190e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1909,183,0 chrXII 785227 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=29.15;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1403,129,0 chrXII 785350 . C T 1094 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=27.35;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1127,105,0 chrXII 785911 . T C 951 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=28.82;SB=-4.450e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:984,93,0 chrXII 786201 . G T 1224 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=25.50;SB=-7.140e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1257,117,0 chrXII 786288 . C T 1640 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.37;SB=-5.850e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1673,153,0 chrXII 786375 . C T 617 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.38;MQ0=0;QD=26.83;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:60:650,60,0 chrXII 786421 . A G 991 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.51;MQ0=0;QD=27.53;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1024,99,0 chrXII 786429 . A C 885 SnpCluster AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=26.03;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:918,87,0 chrXII 786436 . A G 859 SnpCluster AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.49;MQ0=0;QD=26.84;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:892,84,0 chrXII 786439 . C T 919 SnpCluster AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.61;MQ0=0;QD=24.18;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:87:952,87,0 chrXII 786447 . A G 1130 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=27.56;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1163,111,0 chrXII 786552 . G A 2045 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.003;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9720;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;MQRankSum=1.504;QD=26.91;ReadPosRankSum=1.276;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:2078,192,0 chrXII 786562 . T C 2036 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=27.89;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2069,195,0 chrXII 786653 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8600;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.24;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1463,135,0 chrXII 786826 . T C 1870 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=2.6377;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=30.16;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1903,177,0 chrXII 786991 . A G 1775 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.31;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1808,177,0 chrXII 787039 . G C 1422 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=28.44;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1455,141,0 chrXII 787060 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=29.27;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1321,123,0 chrXII 787306 . C T 618 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=13.73;SB=-6.150e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:651,84,0 chrXII 787307 . T A 618 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=13.73;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:84:651,84,0 chrXII 787382 . T C 1793 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.39;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1826,171,0 chrXII 787475 . G T 2442 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=31.31;SB=-9.030e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2475,229,0 chrXII 787510 . A C 1928 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.82;MQ0=0;QD=28.78;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1961,189,0 chrXII 787756 . T C 2157 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.01;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2190,205,0 chrXII 788350 . T C 2002 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=27.42;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2035,192,0 chrXII 788475 . A G 1522 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=27.67;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1555,144,0 chrXII 788536 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.74;MQ0=0;QD=27.81;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1535,144,0 chrXII 788548 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.54;MQ0=0;QD=28.87;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1534,141,0 chrXII 788601 . C A 1802 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.31;MQ0=0;QD=29.54;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1835,180,0 chrXII 788615 . A G 1743 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.07;MQ0=0;QD=28.11;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1776,177,0 chrXII 788626 . A G 1538 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.10;MQ0=0;QD=26.52;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1571,159,0 chrXII 788638 . A G 1705 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.45;MQ0=0;QD=27.06;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1738,171,0 chrXII 788663 . A G 1662 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.78;MQ0=0;QD=26.81;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1695,168,0 chrXII 788682 . T C 1189 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.80;MQ0=0;QD=25.30;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1222,117,0 chrXII 788973 . C T 1559 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=29.42;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1592,147,0 chrXII 788987 . G A 1677 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.93;MQ0=0;QD=27.95;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1710,156,0 chrXII 789047 . A G 1334 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.84;MQ0=0;QD=29.64;SB=-4.250e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1367,129,0 chrXII 789096 . C T 1061 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=35.77;MQ0=0;QD=27.21;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1094,105,0 chrXII 789109 . T C 868 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.18;MQ0=0;QD=25.53;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:901,90,0 chrXII 789110 . G A 869 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.01;MQ0=0;QD=26.33;SB=-3.240e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:87:902,87,0 chrXII 789125 . T G 687 SnpCluster AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.50;MQ0=0;QD=26.42;SB=-1.890e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:72:720,72,0 chrXII 789130 . C T 608 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=26.43;SB=-1.300e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:641,63,0 chrXII 789131 . A G 599 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.29;MQ0=0;QD=26.04;SB=-1.280e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:632,63,0 chrXII 789140 . A G 512 SnpCluster AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.54;MQ0=0;QD=25.60;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:54:545,54,0 chrXII 789146 . T G 422 SnpCluster AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.70;MQ0=0;QD=28.13;SB=-9.400e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:45:455,45,0 chrXII 789151 . C T 299 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=24.92;SB=-9.599e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:332,33,0 chrXII 789152 . A G 298 SnpCluster AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.37;MQ0=0;QD=24.83;SB=-9.399e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:33:331,33,0 chrXII 789188 . T G 732 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=53;Dels=0.00;FS=4.455;HaplotypeScore=3.7832;MLEAC=2;MLEAF=1.00;MQ=28.27;MQ0=0;MQRankSum=1.405;QD=13.81;ReadPosRankSum=-0.883;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:75:765,75,0 chrXII 789193 . C T 853 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.472;DP=55;Dels=0.00;FS=4.616;HaplotypeScore=3.7832;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=-0.598;QD=15.51;ReadPosRankSum=-0.913;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:84:886,84,0 chrXII 789194 . A G 828 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.669;DP=55;Dels=0.00;FS=4.616;HaplotypeScore=3.7832;MLEAC=2;MLEAF=1.00;MQ=28.30;MQ0=0;MQRankSum=-0.535;QD=15.05;ReadPosRankSum=-0.913;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:84:861,84,0 chrXII 789209 . T G 1155 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-3.394;DP=74;Dels=0.00;FS=5.384;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;MQRankSum=0.606;QD=15.61;ReadPosRankSum=1.577;SB=-4.120e+02 GT:AD:DP:GQ:PL 1/1:25,49:74:64:1188,64,0 chrXII 789214 . C T 1222 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=5.051;DP=75;Dels=0.00;FS=5.384;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;MQRankSum=-0.949;QD=16.29;ReadPosRankSum=1.017;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:25,49:75:69:1255,69,0 chrXII 789215 . A G 1177 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.770;DP=75;Dels=0.00;FS=3.833;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=29.13;MQ0=0;MQRankSum=-0.938;QD=15.69;ReadPosRankSum=1.130;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:25,50:75:63:1210,63,0 chrXII 789226 . G A 339.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.394;DP=87;Dels=0.00;FS=10.829;HaplotypeScore=0.9979;MLEAC=1;MLEAF=0.500;MQ=29.65;MQ0=0;MQRankSum=-0.064;QD=3.90;ReadPosRankSum=-5.193;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:66,21:87:99:369,0,935 chrXII 789230 . G A 360.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.297;DP=89;Dels=0.00;FS=7.812;HaplotypeScore=1.9962;MLEAC=1;MLEAF=0.500;MQ=30.05;MQ0=0;MQRankSum=0.558;QD=4.05;ReadPosRankSum=-4.841;SB=-1.801e+01 GT:AD:DP:GQ:PL 0/1:66,23:89:99:390,0,919 chrXII 789234 . A G 471.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088;DP=94;Dels=0.00;FS=8.998;HaplotypeScore=2.9935;MLEAC=1;MLEAF=0.500;MQ=29.99;MQ0=0;MQRankSum=-0.459;QD=5.01;ReadPosRankSum=-4.651;SB=-2.401e+01 GT:AD:DP:GQ:PL 0/1:66,28:94:99:501,0,963 chrXII 789247 . A G 705.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897;DP=98;Dels=0.00;FS=12.684;HaplotypeScore=56.4399;MLEAC=1;MLEAF=0.500;MQ=29.95;MQ0=0;MQRankSum=-0.625;QD=7.19;ReadPosRankSum=2.150;SB=-1.720e+02 GT:AD:DP:GQ:PL 0/1:40,58:98:99:735,0,902 chrXII 789259 . A G 737.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.724;DP=96;Dels=0.00;FS=8.453;HaplotypeScore=54.2780;MLEAC=1;MLEAF=0.500;MQ=30.45;MQ0=0;MQRankSum=-0.267;QD=7.68;ReadPosRankSum=4.444;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:55,41:96:99:767,0,737 chrXII 789264 . T C 725.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-5.051;DP=91;Dels=0.00;FS=7.020;HaplotypeScore=50.5514;MLEAC=1;MLEAF=0.500;MQ=30.03;MQ0=0;MQRankSum=-1.039;QD=7.97;ReadPosRankSum=7.272;SB=-1.080e+02 GT:AD:DP:GQ:PL 0/1:49,42:91:99:755,0,636 chrXII 789266 . G A 774.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.493;DP=90;Dels=0.00;FS=6.955;HaplotypeScore=34.7379;MLEAC=1;MLEAF=0.500;MQ=30.04;MQ0=0;MQRankSum=-0.373;QD=8.60;ReadPosRankSum=7.956;SB=-1.160e+02 GT:AD:DP:GQ:PL 0/1:49,41:90:99:804,0,558 chrXII 789268 . G A 726.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=4.116;DP=90;Dels=0.00;FS=6.955;HaplotypeScore=27.5786;MLEAC=1;MLEAF=0.500;MQ=30.04;MQ0=0;MQRankSum=0.324;QD=8.07;ReadPosRankSum=8.134;SB=-1.150e+02 GT:AD:DP:GQ:PL 0/1:49,41:90:99:756,0,556 chrXII 789269 . G A 747.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.836;DP=88;Dels=0.00;FS=3.787;HaplotypeScore=33.7400;MLEAC=1;MLEAF=0.500;MQ=30.17;MQ0=0;MQRankSum=-0.468;QD=8.49;ReadPosRankSum=8.055;SB=-1.170e+02 GT:AD:DP:GQ:PL 0/1:47,41:88:99:777,0,548 chrXII 789272 . G A 422.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.788;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=31.5450;MLEAC=1;MLEAF=0.500;MQ=30.27;MQ0=0;MQRankSum=-0.441;QD=4.80;ReadPosRankSum=-3.123;SB=-7.701e+01 GT:AD:DP:GQ:PL 0/1:67,21:88:99:452,0,850 chrXII 789275 . G A 166.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=5.252;DP=62;Dels=0.00;FS=7.392;HaplotypeScore=14.4700;MLEAC=1;MLEAF=0.500;MQ=32.20;MQ0=0;MQRankSum=-0.732;QD=2.68;ReadPosRankSum=-4.770;SB=-1.360e+02 GT:AD:DP:GQ:PL 0/1:46,16:62:99:196,0,876 chrXII 789280 . A G 84.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110;DP=62;Dels=0.00;FS=3.665;HaplotypeScore=10.5027;MLEAC=1;MLEAF=0.500;MQ=32.20;MQ0=0;MQRankSum=-0.450;QD=1.35;ReadPosRankSum=-4.354;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,10:62:99:114,0,1028 chrXII 789301 . G A 960 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.61;MQ0=0;QD=21.33;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:96:993,96,0 chrXII 789615 . C G 1610 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=28.25;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1643,156,0 chrXII 790301 . T C 1557 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=27.80;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1590,147,0 chrXII 790384 . C G 2004 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=30.36;SB=-1.001e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2037,189,0 chrXII 790397 . G T 2055 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=31.62;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2088,190,0 chrXII 790484 . A G 1458 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=24.71;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1491,138,0 chrXII 790500 . G A 1681 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=28.49;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1714,159,0 chrXII 790516 . T C 1586 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=4.2548;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=27.34;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1619,153,0 chrXII 790747 . C T 1617 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.71;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1650,153,0 chrXII 791005 . C A 1242 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.29;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1275,117,0 chrXII 791117 . C T 1755 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.81;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1788,168,0 chrXII 791350 . C T 1359 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=29.54;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1392,132,0 chrXII 791497 . G T 1247 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=30.41;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1280,117,0 chrXII 791638 . C T 1899 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.13;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1932,177,0 chrXII 792060 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.61;MQ0=0;QD=26.79;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1453,141,0 chrXII 792203 . C T 1017 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=61.28;MQ0=0;QD=28.25;SB=-2.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1050,96,0 chrXII 792265 . G A 891 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=28.74;SB=-2.690e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:924,84,0 chrXII 792277 . C G 1115 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=27.87;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1148,108,0 chrXII 792511 . T C 913 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.29;MQ0=0;QD=28.53;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:946,90,0 chrXII 792740 . T C 1432 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=28.08;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1465,138,0 chrXII 792823 . G T 951 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.25;MQ0=0;QD=29.72;SB=-4.980e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:984,90,0 chrXII 793324 . C T 493 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.51;MQ0=0;QD=27.39;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:48:526,48,0 chrXII 793555 . C T 402 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.38;MQ0=0;QD=28.71;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:39:435,39,0 chrXII 793621 . A T 515 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.10;MQ0=0;QD=27.11;SB=-2.910e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:548,51,0 chrXII 793739 . G A 553 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.92;MQ0=0;QD=30.72;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:54:586,54,0 chrXII 793795 . C T 447 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.61;MQ0=0;QD=26.29;SB=-1.310e+02 GT:AD:DP:GQ:PL 1/1:0,17:17:42:480,42,0 chrXII 793831 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.903;DP=18;Dels=0.00;FS=34.857;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=48.72;MQ0=0;MQRankSum=-2.920;QD=2.33;ReadPosRankSum=-3.027;SB=-2.501e+00 GT:AD:DP:GQ:PL 0/1:14,4:18:72:72,0,369 chrXII 793847 . C T 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.569;DP=23;Dels=0.00;FS=61.310;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.00;MQ0=0;MQRankSum=-2.308;QD=2.52;ReadPosRankSum=-1.939;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:12,11:23:88:88,0,314 chrXII 793915 . T C 646 filter AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=41.92;MQ0=0;QD=12.67;SB=-6.524e-03 GT:AD:DP:GQ:PL 1/1:0,50:51:63:679,63,0 chrXII 794238 . T A 907 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=29.26;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:940,87,0 chrXII 794427 . T A 1320 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.26;MQ0=0;QD=30.70;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1353,123,0 chrXII 794889 . A G 1695 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.82;SB=-6.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1728,159,0 chrXII 795207 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.06;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:87:965,87,0 chrXII 795311 . G C 1571 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=28.56;SB=-4.190e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1604,153,0 chrXII 796132 . T A 1874 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.335;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;MQRankSum=1.229;QD=30.23;ReadPosRankSum=0.503;SB=-5.960e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1907,148,0 chrXII 796621 . A C 1682 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6439;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=27.13;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1715,162,0 chrXII 796778 . G C 1132 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.38;MQ0=0;QD=30.59;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1165,108,0 chrXII 797161 . A G 1585 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=28.30;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1618,153,0 chrXII 797839 . C T 1257 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=26.74;SB=-3.610e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1290,120,0 chrXII 797948 . A G 1827 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=28.11;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1860,174,0 chrXII 798538 . G A 1461 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=29.22;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1494,138,0 chrXII 798683 . A C 1169 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=27.83;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1202,111,0 chrXII 799700 . C T 1940 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1973,180,0 chrXII 799903 . C A 1393 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=30.28;SB=-6.530e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1426,132,0 chrXII 800378 . A G 2159 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.99;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2192,204,0 chrXII 800672 . T G 1170 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.59;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1203,114,0 chrXII 801071 . G A 1314 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.05;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1347,123,0 chrXII 801257 . A G 1769 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.9931;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=27.22;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1802,168,0 chrXII 801402 . G A 1973 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.3471;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;MQRankSum=-0.792;QD=28.19;ReadPosRankSum=0.990;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:1,69:70:99:2006,157,0 chrXII 801478 . T C 1721 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=29.67;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1754,165,0 chrXII 801665 . A G 822 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=21.63;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:78:855,78,0 chrXII 802287 . C T 1181 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.52;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1214,111,0 chrXII 802510 . T A 900 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=4.6560;MLEAC=2;MLEAF=1.00;MQ=60.58;MQ0=0;QD=24.32;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:87:933,87,0 chrXII 802668 . T C 1912 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=28.97;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1945,183,0 chrXII 802767 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.63;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1525,141,0 chrXII 803022 . T C 1352 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.04;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1385,132,0 chrXII 803175 . C T 944 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.51;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:977,90,0 chrXII 803215 . A G 807 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=20.69;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:78:840,78,0 chrXII 803492 . G A 1390 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=25.74;SB=-6.440e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1423,129,0 chrXII 803510 . G T 1383 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=24.26;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1416,129,0 chrXII 803546 . T C 1173 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=50;Dels=0.00;FS=3.188;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;MQRankSum=1.525;QD=23.46;ReadPosRankSum=-0.624;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:86:1206,86,0 chrXII 803722 . G C 777 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=25.90;SB=-3.840e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:810,75,0 chrXII 803754 . T C 955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.644;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.634;QD=27.29;ReadPosRankSum=1.535;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,34:35:93:988,93,0 chrXII 803775 . A C 972 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=26.27;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:1005,96,0 chrXII 803833 . A G 1255 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=2.7341;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.19;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1288,126,0 chrXII 803865 . G A 1368 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.09;SB=-7.110e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1401,129,0 chrXII 803918 . C T 986 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=5.5827;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=24.05;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:96:1019,96,0 chrXII 803961 . T C 1376 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=26.98;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1409,135,0 chrXII 804054 . C G 1777 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=30.64;SB=-8.580e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1810,171,0 chrXII 804204 . A G 1467 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.21;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1500,141,0 chrXII 804368 . T A 1155 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.86;SB=-4.870e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1188,111,0 chrXII 804683 . G A 1291 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.36;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1324,120,0 chrXII 804772 . G A 1264 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=24.78;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1297,117,0 chrXII 804978 . T C 1511 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.05;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1544,144,0 chrXII 805190 . A G 1229 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=27.31;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1262,117,0 chrXII 805414 . G T 2263 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=3.4019;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=30.17;SB=-7.710e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2296,208,0 chrXII 805437 . T G 1909 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=27.27;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1942,186,0 chrXII 805452 . T A 1424 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=24.14;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1457,132,0 chrXII 805710 . G A 1083 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=28.50;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1116,102,0 chrXII 805747 . G A 1523 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=29.86;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1556,144,0 chrXII 805784 . C G 1932 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=28.84;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1965,186,0 chrXII 805799 . T C 1883 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=28.10;SB=-7.010e+02 GT:AD:DP:GQ:PL 1/1:0,66:67:99:1916,177,0 chrXII 805896 . A G 1973 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=29.45;SB=-1.029e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2006,192,0 chrXII 805965 . G A 1909 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.37;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1942,180,0 chrXII 806728 . C G 526 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.87;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:54:559,54,0 chrXII 806928 . G C 2034 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.9164;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=28.65;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2067,198,0 chrXII 806972 . T C 1739 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=28.51;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1772,165,0 chrXII 807151 . C T 1991 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=3.9598;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=31.11;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:2024,183,0 chrXII 807178 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.43;SB=-3.310e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1699,156,0 chrXII 807307 . T G 1273 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=24.96;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1306,123,0 chrXII 807344 . C A 1475 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6671;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=25.88;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1508,138,0 chrXII 807455 . A T 2324 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=30.18;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2357,223,0 chrXII 807496 . A G 1973 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=2.3460;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=28.59;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,68:69:99:2006,189,0 chrXII 807554 . A G 2085 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=30.22;SB=-1.036e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2118,204,0 chrXII 807561 . C T 1951 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=31.98;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1984,183,0 chrXII 807603 . G A 1676 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=31.62;SB=-8.300e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1709,156,0 chrXII 807708 . T C 2346 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=30.47;SB=-8.550e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2379,226,0 chrXII 807737 . C G 1844 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.61;MQ0=0;QD=27.52;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1877,180,0 chrXII 807751 . T C 2124 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=27.95;SB=-1.076e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2157,207,0 chrXII 807795 . C A 2121 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=28.28;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2154,201,0 chrXII 807813 . A T 2342 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.31;MQ0=0;QD=28.22;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:2375,223,0 chrXII 807829 . A G 2144 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.53;MQ0=0;QD=27.14;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2177,207,0 chrXII 807870 . T A 1374 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=25.92;SB=-6.840e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1407,129,0 chrXII 808083 . T A 2122 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.38;MQ0=0;QD=29.47;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2155,199,0 chrXII 808098 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=57.14;MQ0=0;QD=27.47;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2066,192,0 chrXII 808103 . A T 2072 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=27.63;SB=-1.213e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2105,193,0 chrXII 808166 . A G 1850 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=57.31;MQ0=0;QD=26.43;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:1883,174,0 chrXII 808189 . T C 2337 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=29.21;SB=-1.073e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2370,220,0 chrXII 808209 . C T 2423 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=30.29;SB=-1.183e+03 GT:AD:DP:GQ:PL 1/1:0,79:80:99:2456,226,0 chrXII 808279 . T A 2589 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=30.82;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2622,241,0 chrXII 808452 . G A 1739 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.05;SB=-4.560e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1772,162,0 chrXII 808468 . A G 1292 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=28.09;SB=-3.560e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1325,126,0 chrXII 808557 . A G 1228 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.95;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1261,120,0 chrXII 808607 . G T 1619 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=28.91;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1652,150,0 chrXII 808623 . C T 1580 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.30;MQ0=0;QD=28.73;SB=-3.760e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1613,150,0 chrXII 808708 . A G 1837 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=28.26;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1870,180,0 chrXII 808734 . A G 2194 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=26.76;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2227,211,0 chrXII 808761 . G A 2489 PASS AC=2;AF=1.00;AN=2;DP=85;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=29.28;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,85:85:99:2522,229,0 chrXII 808805 . A C 2341 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.90;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2374,223,0 chrXII 808841 . G A 2182 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=30.31;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2215,205,0 chrXII 808892 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.91;MQ0=0;QD=29.00;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1831,165,0 chrXII 808950 . G C 1974 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=29.46;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2007,183,0 chrXII 809005 . A T 1901 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=29.70;SB=-9.500e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1934,180,0 chrXII 809043 . A T 1338 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=27.87;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1371,126,0 chrXII 809080 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=28.43;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1369,129,0 chrXII 809082 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=29.79;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1433,135,0 chrXII 809130 . G A 1613 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.052;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=0.247;QD=28.80;ReadPosRankSum=1.670;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1646,129,0 chrXII 809132 . T C 1563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=56;Dels=0.00;FS=3.332;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.37;MQ0=0;MQRankSum=-0.247;QD=27.91;ReadPosRankSum=1.485;SB=-7.400e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1596,126,0 chrXII 809231 . C T 1566 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=30.71;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1599,147,0 chrXII 809333 . C T 1980 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=27.50;SB=-8.210e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:2013,180,0 chrXII 809343 . T C 1986 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=26.13;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2019,192,0 chrXII 809428 . T C 2071 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.18;MQ0=0;QD=28.76;SB=-6.690e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2104,204,0 chrXII 809434 . T C 2028 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.15;MQ0=0;QD=28.56;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2061,195,0 chrXII 809476 . C T 1967 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=30.26;SB=-2.620e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2000,183,0 chrXII 809477 . A G 1891 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=29.09;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1924,183,0 chrXII 809596 . C A 967 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=29.30;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:1000,93,0 chrXII 809769 . G A 2001 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=29.00;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2034,186,0 chrXII 809989 . G A 1492 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=28.15;SB=-3.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1525,138,0 chrXII 810047 . A G 1193 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=28.40;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1226,114,0 chrXII 810052 . G A 1246 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=29.67;SB=-6.340e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1279,114,0 chrXII 810176 . A G 1273 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.45;MQ0=0;QD=28.29;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1306,123,0 chrXII 810266 . C T 1820 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.30;MQ0=0;QD=29.84;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1853,168,0 chrXII 810333 . G C 2315 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=2.9874;MLEAC=2;MLEAF=1.00;MQ=56.02;MQ0=0;QD=30.06;SB=-8.560e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2348,223,0 chrXII 810423 . T C 1806 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=26.17;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1839,171,0 chrXII 810443 . C T 1530 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=55.58;MQ0=0;QD=28.33;SB=-3.580e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1563,144,0 chrXII 810674 . T C 1219 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=27.09;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1252,120,0 chrXII 810702 . A G 1505 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=28.94;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1538,144,0 chrXII 810737 . A C 1445 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=28.33;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1478,138,0 chrXII 810794 . C T 1756 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=28.32;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1789,165,0 chrXII 810821 . A G 1551 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=27.70;SB=-5.760e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1584,147,0 chrXII 810830 . C T 1595 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.77;MQ0=0;QD=25.32;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1628,150,0 chrXII 810884 . G A 1748 SnpCluster AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.59;MQ0=0;QD=24.28;SB=-1.066e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:1781,165,0 chrXII 810890 . C T 1445 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=32.36;MQ0=0;QD=21.57;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1478,135,0 chrXII 810891 . C T 1444 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=29.75;MQ0=0;QD=22.92;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1477,135,0 chrXII 810905 . T C 1459 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.8136;MLEAC=2;MLEAF=1.00;MQ=30.23;MQ0=0;QD=21.46;SB=-9.390e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1492,141,0 chrXII 810911 . C T 1519 SnpCluster AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=31.38;MQ0=0;QD=20.81;SB=-1.123e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:1552,144,0 chrXII 810914 . C A 1612 SnpCluster AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=1.8410;MLEAC=2;MLEAF=1.00;MQ=34.90;MQ0=0;QD=20.41;SB=-1.246e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1645,153,0 chrXII 810923 . G A 1850 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=1.8273;MLEAC=2;MLEAF=1.00;MQ=38.20;MQ0=0;QD=24.67;SB=-9.780e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:1883,174,0 chrXII 811064 . A G 1807 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=31.16;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1840,174,0 chrXII 811113 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=29.07;SB=-7.420e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1661,153,0 chrXII 811301 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.97;MQ0=0;QD=28.69;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1812,165,0 chrXII 811334 . A G 2003 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.49;MQ0=0;QD=28.61;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2036,192,0 chrXII 811385 . T C 1885 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=1.9399;MLEAC=2;MLEAF=1.00;MQ=55.14;MQ0=0;QD=27.32;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1918,180,0 chrXII 811433 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=28.04;SB=-7.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1912,180,0 chrXII 811471 . A G 489 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=7.89;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:69:522,69,0 chrXII 811472 . G A 489 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.88;MQ0=0;QD=7.89;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:69:522,69,0 chrXII 811502 . C T 1339 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=55.84;MQ0=0;QD=28.49;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1372,126,0 chrXII 811640 . T C 1431 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.86;MQ0=0;QD=28.06;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1464,144,0 chrXII 811649 . T C 1604 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.38;MQ0=0;QD=30.26;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1637,153,0 chrXII 811661 . T C 1625 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.09;MQ0=0;QD=30.09;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1658,156,0 chrXII 811670 . C T 1821 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.60;MQ0=0;QD=29.85;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1854,171,0 chrXII 811673 . C T 1601 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.00;MQ0=0;QD=30.21;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1634,150,0 chrXII 811757 . G A 1509 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=26.95;SB=-7.910e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1542,147,0 chrXII 811802 . A T 1412 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.82;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1445,135,0 chrXII 811886 . T C 1339 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=27.33;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1372,129,0 chrXII 811914 . T C 1723 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=28.72;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1756,159,0 chrXII 812219 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=27.98;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1796,165,0 chrXII 812855 . C T 1924 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=30.54;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1957,177,0 chrXII 812990 . T C 1542 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.65;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1575,147,0 chrXII 813197 . G A 1649 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=30.54;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1682,153,0 chrXII 813236 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=28.86;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1649,150,0 chrXII 813350 . A T 1046 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.06;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1079,99,0 chrXII 813653 . A G 2213 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=29.12;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2246,208,0 chrXII 813776 . T A 1582 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=28.76;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1615,147,0 chrXII 813812 . T C 1188 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.63;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1221,114,0 chrXII 814017 . G T 1057 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.42;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1090,99,0 chrXII 814256 . T C 1374 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=26.94;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1407,138,0 chrXII 814337 . A G 2015 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.55;MQ0=0;QD=30.07;SB=-2.500e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2048,192,0 chrXII 814364 . A T 1547 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=29.75;SB=-4.960e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1580,144,0 chrXII 814367 . G A 1723 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=29.71;SB=-7.120e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1756,162,0 chrXII 814586 . G A 1495 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=29.31;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1528,141,0 chrXII 814658 . G A 1230 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=29.29;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1263,114,0 chrXII 815093 . T C 1428 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=29.14;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1461,138,0 chrXII 815108 . C T 1662 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.11;MQ0=0;QD=30.22;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1695,156,0 chrXII 815117 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.96;MQ0=0;QD=30.81;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1666,153,0 chrXII 815222 . T A 1650 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.18;MQ0=0;QD=29.46;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1683,153,0 chrXII 815324 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=30.25;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1576,147,0 chrXII 815357 . G A 1423 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=30.93;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1456,135,0 chrXII 815365 . C G 1598 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=30.73;SB=-5.620e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1631,153,0 chrXII 815475 . A G 1196 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=24.92;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1229,120,0 chrXII 815477 . A T 1286 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.56;MQ0=0;QD=26.79;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1319,123,0 chrXII 815480 . C A 1286 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.20;MQ0=0;QD=27.96;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1319,123,0 chrXII 815496 . G A 34.97 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=0.79;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:9:67,9,0 chrXII 815497 . A C 60.51 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=1.38;SB=-4.475e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:12:93,12,0 chrXII 815498 . T A 106.13 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.91;MQ0=0;QD=2.41;SB=-4.591e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:18:139,18,0 chrXII 815526 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=48.68;MQ0=0;QD=27.06;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1332,126,0 chrXII 815554 . C T 1395 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=55.74;MQ0=0;QD=29.68;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1428,132,0 chrXII 815763 . C T 1654 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=26.25;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1687,156,0 chrXII 815769 . T G 1753 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=27.83;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1786,168,0 chrXII 815784 . T G 1841 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=29.22;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1874,177,0 chrXII 815890 . G A 1577 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.31;MQ0=0;QD=30.92;SB=-1.260e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1610,153,0 chrXII 815897 . C T 1469 SnpCluster AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=28.9455;MLEAC=2;MLEAF=1.00;MQ=39.98;MQ0=0;QD=28.80;SB=-1.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1502,141,0 chrXII 815901 . T C 1385 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=30.9396;MLEAC=2;MLEAF=1.00;MQ=36.86;MQ0=0;QD=28.85;SB=-2.170e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1418,135,0 chrXII 815907 . T C 340 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=35.78;MQ0=0;QD=7.73;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,12:44:36:373,36,0 chrXII 815940 . C T 991 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=37.91;MQ0=0;QD=26.78;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:96:1024,96,0 chrXII 815987 . G A 932 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.85;MQ0=0;QD=26.63;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:965,90,0 chrXII 815995 . C G 919 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.636;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=47.93;MQ0=0;MQRankSum=0.000;QD=25.53;ReadPosRankSum=-1.733;SB=-4.110e+02 GT:AD:DP:GQ:PL 1/1:1,35:36:90:952,90,0 chrXII 816028 . A G 855 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.81;MQ0=0;QD=25.15;SB=-3.950e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:888,84,0 chrXII 816049 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.75;MQ0=0;QD=27.30;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1289,120,0 chrXII 816058 . C T 1162 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.80;MQ0=0;QD=25.82;SB=-5.410e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1195,111,0 chrXII 816068 . A G 1086 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.42;MQ0=0;QD=25.86;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1119,105,0 chrXII 816162 . T C 1166 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.48;MQ0=0;QD=28.44;SB=-2.870e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1199,117,0 chrXII 816236 . G A 1411 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.81;MQ0=0;QD=27.67;SB=-2.560e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1444,132,0 chrXII 816279 . G A 1120 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=28.00;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1153,105,0 chrXII 816285 . T C 1053 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.33;MQ0=0;QD=26.32;SB=-3.220e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1086,105,0 chrXII 816323 . C G 1339 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=51.58;MQ0=0;QD=28.49;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1372,126,0 chrXII 816399 . C T 2452 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=55.33;MQ0=0;QD=29.90;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2485,232,0 chrXII 816420 . A C 1963 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.46;MQ0=0;QD=29.30;SB=-1.028e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1996,192,0 chrXII 816603 . G A 971 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=28.56;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:1004,90,0 chrXII 816648 . T C 1025 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=28.47;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1058,99,0 chrXII 816720 . C T 946 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=27.03;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:90:979,90,0 chrXII 816918 . A G 1299 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.24;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1332,126,0 chrXII 816966 . C T 1418 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=31.51;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1451,132,0 chrXII 816978 . T A 1468 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=31.91;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1501,138,0 chrXII 817044 . A G 1422 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=30.26;SB=-5.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1455,138,0 chrXII 817116 . A G 1614 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.56;MQ0=0;QD=29.89;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1647,159,0 chrXII 817183 . A G 859 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.44;MQ0=0;QD=26.84;SB=-4.100e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:84:892,84,0 chrXII 817186 . G A 899 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.20;MQ0=0;QD=31.00;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:87:932,87,0 chrXII 817227 . C G 1128 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=29.68;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1161,108,0 chrXII 817279 . A G 1567 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=30.73;SB=-6.650e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1600,150,0 chrXII 817345 . T A 1645 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.35;MQ0=0;QD=29.37;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1678,150,0 chrXII 817376 . T A 1677 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.88;MQ0=0;QD=30.49;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1710,156,0 chrXII 817463 . G A 1256 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.53;MQ0=0;QD=29.21;SB=-6.240e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1289,120,0 chrXII 817525 . G C 1567 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.25;MQ0=0;QD=26.56;SB=-6.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1600,153,0 chrXII 817587 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.16;MQ0=0;QD=30.45;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1708,156,0 chrXII 817684 . G C 724 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=28.96;SB=-3.820e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:72:757,72,0 chrXII 817710 . A C 551 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.13;MQ0=0;QD=29.00;SB=-2.890e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:57:584,57,0 chrXII 817755 . T A 1001 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.43;MQ0=0;QD=30.33;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1034,96,0 chrXII 817814 . A T 873 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.14;MQ0=0;QD=24.25;SB=-1.520e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:84:906,84,0 chrXII 817850 . C G 519 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=14.83;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:66:552,66,0 chrXII 817851 . G A 519 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=35.56;MQ0=0;QD=14.83;SB=-7.701e+01 GT:AD:DP:GQ:PL 1/1:0,35:35:66:552,66,0 chrXII 817863 . G T 658 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.75;MQ0=0;QD=19.94;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,33:33:66:691,66,0 chrXII 817870 . A G 555 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.67;MQ0=0;QD=17.90;SB=-7.501e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:57:588,57,0 chrXII 817876 . G A 567 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=17.72;SB=-7.601e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:57:600,57,0 chrXII 817907 . T C 523 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.23;MQ0=0;QD=19.37;SB=-5.401e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:54:556,54,0 chrXII 817938 . C T 681 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=2.5997;MLEAC=2;MLEAF=1.00;MQ=28.12;MQ0=0;QD=20.64;SB=-1.850e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:66:714,66,0 chrXII 817973 . T C 522 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.47;MQ0=0;QD=19.33;SB=-2.150e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:54:555,54,0 chrXII 817998 . C A 502 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.01;MQ0=0;QD=19.31;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:51:535,51,0 chrXII 818004 . A G 452 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.88;MQ0=0;QD=18.08;SB=-2.510e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:48:485,48,0 chrXII 818018 . T C 199.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=14.22;SB=-1.060e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:232,24,0 chrXII 818019 . G A 202.03 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.56;MQ0=0;QD=14.43;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,14:14:24:235,24,0 chrXII 818041 . C T 566 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.40;MQ0=0;QD=26.95;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:57:599,57,0 chrXII 818046 . C A 628 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.73;MQ0=0;QD=27.30;SB=-2.730e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:63:661,63,0 chrXII 818092 . A G 1053 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.33;MQ0=0;QD=30.09;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1086,102,0 chrXII 818185 . A G 345 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=1;QD=20.29;SB=-8.700e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:36:378,36,0 chrXII 818207 . T A 230.01 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=1;QD=16.43;SB=-8.896e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:27:263,27,0 chrXII 818228 . T C 202.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=2;QD=16.84;SB=-5.991e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:235,24,0 chrXII 818235 . C T 201.03 PASS AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.69;MQ0=2;QD=16.75;SB=-5.991e+01 GT:AD:DP:GQ:PL 1/1:0,12:12:24:234,24,0 chrXII 818285 . C T 493 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=2;QD=17.61;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:51:526,51,0 chrXII 818289 . C T 490 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.66;MQ0=2;QD=17.50;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,28:28:51:523,51,0 chrXII 818366 . C T 536 PASS AC=2;AF=1.00;AN=2;DP=22;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=24.36;SB=-2.790e+02 GT:AD:DP:GQ:PL 1/1:0,22:22:66:569,66,0 chrXII 818390 . A T 409 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.25;MQ0=0;QD=21.53;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:54:442,54,0 chrXII 818542 . T C 137.13 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.19;MQ0=0;QD=9.80;SB=-4.314e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:18:170,18,0 chrXII 818562 . T C 233.01 PASS AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.63;MQ0=0;QD=17.92;SB=-4.302e+01 GT:AD:DP:GQ:PL 1/1:0,13:13:27:266,27,0 chrXII 818576 . A G 297 PASS AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=41.80;MQ0=0;QD=21.21;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,14:14:33:330,33,0 chrXII 818582 . A C 385 PASS AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.38;MQ0=0;QD=24.06;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,16:16:42:418,42,0 chrXII 818588 . C A 438 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.32;MQ0=0;QD=29.20;SB=-4.301e+01 GT:AD:DP:GQ:PL 1/1:0,15:15:45:471,45,0 chrXII 818697 . A C 959 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.20;MQ0=0;QD=29.06;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:992,96,0 chrXII 818717 . A C 656 PASS AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=28.52;SB=-3.510e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:66:689,66,0 chrXII 818735 . C A 509 PASS AC=2;AF=1.00;AN=2;DP=19;Dels=0.00;FS=0.000;HaplotypeScore=12.5646;MLEAC=2;MLEAF=1.00;MQ=39.57;MQ0=0;QD=26.79;SB=-2.660e+02 GT:AD:DP:GQ:PL 1/1:0,19:19:51:542,51,0 chrXII 818791 . A C 667 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=28;Dels=0.00;FS=9.700;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=0;MQRankSum=-1.609;QD=23.82;ReadPosRankSum=-0.619;SB=-5.501e+01 GT:AD:DP:GQ:PL 1/1:1,27:28:39:700,39,0 chrXII 818807 . T C 26.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.743;DP=28;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=0;MQRankSum=-1.733;QD=0.93;ReadPosRankSum=-1.362;SB=-3.003e+01 GT:AD:DP:GQ:PL 0/1:1,27:28:21:56,0,21 chrXII 818808 . C T 26.04 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.609;DP=28;Dels=0.00;FS=11.461;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.99;MQ0=0;MQRankSum=-1.733;QD=0.93;ReadPosRankSum=-1.114;SB=-2.904e+01 GT:AD:DP:GQ:PL 0/1:1,27:28:19:56,0,19 chrXII 818811 . G T 741 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.121;DP=34;Dels=0.00;FS=12.304;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=-1.733;QD=21.79;ReadPosRankSum=-1.019;SB=-2.601e+01 GT:AD:DP:GQ:PL 1/1:1,33:34:47:774,47,0 chrXII 818817 . G A 792 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.634;DP=35;Dels=0.00;FS=10.669;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.71;MQ0=0;MQRankSum=-1.733;QD=22.63;ReadPosRankSum=-0.941;SB=-5.701e+01 GT:AD:DP:GQ:PL 1/1:1,34:35:50:825,50,0 chrXII 818826 . T G 844 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.466;DP=39;Dels=0.00;FS=8.921;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.33;MQ0=0;MQRankSum=-1.555;QD=21.64;ReadPosRankSum=-0.489;SB=-1.100e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:58:877,58,0 chrXII 818837 . C T 928 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.127;DP=41;Dels=0.00;FS=7.677;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.30;MQ0=0;MQRankSum=-1.395;QD=22.63;ReadPosRankSum=0.549;SB=-1.690e+02 GT:AD:DP:GQ:PL 1/1:1,40:41:64:961,64,0 chrXII 818996 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=28.11;SB=-4.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1270,120,0 chrXII 818997 . C A 1266 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.54;MQ0=0;QD=28.77;SB=-4.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1299,120,0 chrXII 819017 . T A 787 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=16.74;SB=-3.210e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:820,108,0 chrXII 819018 . A G 787 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.04;MQ0=0;QD=16.74;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:820,108,0 chrXII 819032 . T G 892 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.13;MQ0=0;QD=20.74;SB=-3.340e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:925,108,0 chrXII 819035 . C T 924 SnpCluster AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.09;MQ0=0;QD=21.00;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:957,111,0 chrXII 819038 . G A 1045 SnpCluster AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.44;MQ0=0;QD=26.12;SB=-2.180e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1078,99,0 chrXII 819079 . T C 959 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.938;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.9962;MLEAC=2;MLEAF=1.00;MQ=41.73;MQ0=0;MQRankSum=-0.817;QD=23.39;ReadPosRankSum=-0.757;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:77:992,77,0 chrXII 819099 . G A 1133 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.98;MQ0=0;QD=26.98;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1166,108,0 chrXII 819282 . T A 1762 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.47;MQ0=0;QD=30.38;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1795,165,0 chrXII 819555 . C T 1004 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=27.89;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:1037,93,0 chrXII 819579 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.6617;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=26.19;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1447,135,0 chrXII 819611 . T G 1405 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=27.02;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1438,135,0 chrXII 819643 . C T 1423 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.80;MQ0=0;QD=27.90;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1456,135,0 chrXII 819681 . A G 1558 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.22;MQ0=0;QD=28.33;SB=-4.800e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1591,150,0 chrXII 819713 . C T 1738 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.85;MQ0=0;QD=32.19;SB=-2.670e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1771,162,0 chrXII 819720 . A G 1674 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=57.02;MQ0=0;QD=29.37;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1707,162,0 chrXII 819742 . A G 1813 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.97;MQ0=0;QD=30.22;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1846,174,0 chrXII 819834 . C G 818 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.74;MQ0=0;QD=26.39;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:81:851,81,0 chrXII 819836 . A G 830 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=25.94;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:863,81,0 chrXII 819851 . A G 1080 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.02;MQ0=0;QD=27.69;SB=-4.740e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1113,105,0 chrXII 820286 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=30.45;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1708,156,0 chrXII 820297 . G A 1693 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=29.19;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1726,159,0 chrXII 820477 . G A 946 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=30.52;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:90:979,90,0 chrXII 820505 . G T 1112 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=29.26;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1145,105,0 chrXII 820615 . G A 1347 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=26.94;SB=-7.920e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1380,123,0 chrXII 820636 . T C 1530 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=26.84;SB=-7.480e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1563,147,0 chrXII 820804 . A G 1560 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.5774;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=26.44;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1593,150,0 chrXII 820873 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=28.83;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1590,147,0 chrXII 820890 . A G 1476 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=26.36;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1509,138,0 chrXII 821080 . T C 902 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=26.53;SB=-5.090e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:935,90,0 chrXII 821128 . A G 1561 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=27.87;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1594,147,0 chrXII 821269 . A G 1430 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.18;MQ0=0;QD=28.04;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1463,135,0 chrXII 821272 . A G 1439 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=28.78;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1472,138,0 chrXII 821362 . A G 1795 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.4558;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.42;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1828,168,0 chrXII 821461 . A G 996 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.29;SB=-2.580e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1029,96,0 chrXII 821542 . C T 1308 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.07;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1341,123,0 chrXII 821896 . A C 1660 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=27.67;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1693,156,0 chrXII 822045 . C T 1892 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=61;Dels=0.00;FS=5.066;HaplotypeScore=1.8100;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=1.619;QD=31.02;ReadPosRankSum=0.880;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1925,177,0 chrXII 822304 . T A 986 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=30.81;SB=-4.270e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:93:1019,93,0 chrXII 822379 . C T 1574 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275;DP=53;Dels=0.00;FS=4.938;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;MQRankSum=-1.209;QD=29.70;ReadPosRankSum=-0.948;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1607,120,0 chrXII 822430 . A G 2091 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.195;DP=71;Dels=0.00;FS=3.461;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;MQRankSum=1.586;QD=29.45;ReadPosRankSum=1.244;SB=-9.680e+02 GT:AD:DP:GQ:PL 1/1:1,70:71:99:2124,173,0 chrXII 822539 . A G 1605 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=28.66;SB=-6.980e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1638,153,0 chrXII 822608 . A T 1368 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=24.87;SB=-7.410e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1401,129,0 chrXII 822648 . C T 1528 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=29.96;SB=-6.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1561,144,0 chrXII 822750 . C T 1152 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.222;DP=39;Dels=0.00;FS=4.771;HaplotypeScore=2.9526;MLEAC=2;MLEAF=1.00;MQ=57.59;MQ0=0;MQRankSum=0.133;QD=29.54;ReadPosRankSum=-0.489;SB=-3.570e+02 GT:AD:DP:GQ:PL 1/1:1,38:39:81:1185,81,0 chrXII 822768 . A C 1195 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=48;Dels=0.00;FS=6.021;HaplotypeScore=1.9632;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;MQRankSum=0.794;QD=24.90;ReadPosRankSum=-1.372;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:90:1228,90,0 chrXII 822798 . G A 1042 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.299;DP=41;Dels=0.00;FS=6.478;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;MQRankSum=0.953;QD=25.41;ReadPosRankSum=0.260;SB=-2.250e+02 GT:AD:DP:GQ:PL 1/1:1,39:41:74:1075,74,0 chrXII 822847 . G A 1238 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.77;MQ0=0;QD=29.48;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1271,117,0 chrXII 822853 . A G 1269 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.45;MQ0=0;QD=27.59;SB=-5.770e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1302,123,0 chrXII 822903 . T A 1030 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=27.84;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1063,99,0 chrXII 823022 . G A 1223 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.11;MQ0=0;QD=26.59;SB=-3.150e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1256,117,0 chrXII 823029 . A G 1087 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.86;MQ0=0;QD=25.28;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1120,105,0 chrXII 823032 . C T 1117 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=26.60;SB=-2.320e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1150,105,0 chrXII 823121 . C G 1667 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=27.33;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1700,159,0 chrXII 823217 . G A 1716 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.70;MQ0=0;QD=30.64;SB=-5.240e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1749,159,0 chrXII 823244 . T C 1805 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.70;MQ0=0;QD=29.59;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1838,171,0 chrXII 823320 . T C 1472 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=30.04;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1505,141,0 chrXII 823325 . T C 1512 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.75;MQ0=0;QD=28.00;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1545,147,0 chrXII 823338 . G A 1425 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.55;MQ0=0;QD=29.08;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1458,132,0 chrXII 823394 . C T 1569 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.493;DP=58;Dels=0.00;FS=5.330;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=45.06;MQ0=0;MQRankSum=-0.896;QD=27.05;ReadPosRankSum=1.553;SB=-4.460e+02 GT:AD:DP:GQ:PL 1/1:1,57:58:99:1602,127,0 chrXII 823434 . G A 933 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=41.66;MQ0=0;QD=25.22;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:90:966,90,0 chrXII 823767 . A G 1340 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=29.78;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1373,132,0 chrXII 824312 . G A 1625 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=29.02;SB=-4.220e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1658,150,0 chrXII 826943 . A G 1938 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=29.82;SB=-9.170e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1971,186,0 chrXII 827781 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.11;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1634,156,0 chrXII 828201 . G A 1015 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.71;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1048,96,0 chrXII 828244 . T C 1182 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=24.62;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1215,114,0 chrXII 828257 . G C 1455 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.21;MQ0=0;QD=28.53;SB=-3.740e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1488,144,0 chrXII 828622 . T G 1857 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=29.95;SB=-3.180e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1890,183,0 chrXII 828903 . C T 1373 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.20;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1406,129,0 chrXII 829269 . C T 1192 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=25.91;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1225,114,0 chrXII 829435 . G A 884 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.15;MQ0=0;QD=26.79;SB=-5.270e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:84:917,84,0 chrXII 829486 . T C 1374 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.38;MQ0=0;QD=28.62;SB=-3.160e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1407,129,0 chrXII 829513 . C T 1266 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.22;MQ0=0;QD=28.77;SB=-3.280e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1299,117,0 chrXII 829620 . C T 1120 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=26.67;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1153,105,0 chrXII 829636 . A G 1143 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=25.98;SB=-2.490e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1176,111,0 chrXII 830392 . C T 1638 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=29.78;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1671,153,0 chrXII 830462 . T C 2037 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=28.29;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:2070,195,0 chrXII 830534 . G A 2049 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=30.13;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2082,192,0 chrXII 830644 . T A 445.06 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.547;DP=56;Dels=0.00;FS=6.193;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.68;MQ0=0;MQRankSum=1.747;QD=7.95;ReadPosRankSum=2.802;SB=-7.981e+02 GT:AD:DP:GQ:PL 1/1:3,53:56:21:478,21,0 chrXII 830721 . G A 1364 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=29.65;SB=-4.540e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1397,132,0 chrXII 830731 . A G 1209 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.21;MQ0=0;QD=25.19;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1242,120,0 chrXII 830741 . T A 1515 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.26;MQ0=0;QD=28.06;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1548,144,0 chrXII 830945 . C T 1908 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.90;MQ0=0;QD=28.48;SB=-7.360e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1941,180,0 chrXII 831007 . T C 1515 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.03;MQ0=0;QD=26.58;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1548,147,0 chrXII 831036 . A T 1588 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=32.41;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1621,147,0 chrXII 831046 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=31.60;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1676,153,0 chrXII 831096 . A G 1914 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=30.38;SB=-3.800e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1947,183,0 chrXII 831136 . G A 1481 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=1.9747;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.48;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1514,141,0 chrXII 831241 . G A 1556 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=31.12;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1589,147,0 chrXII 831618 . G A 1608 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=29.78;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1641,150,0 chrXII 831658 . C T 2054 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=58.09;MQ0=0;QD=28.93;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,70:71:99:2087,192,0 chrXII 831805 . C T 2089 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=29.84;SB=-1.071e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2122,193,0 chrXII 832172 . G A 842 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.74;MQ0=0;QD=29.03;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:81:875,81,0 chrXII 832198 . T C 794 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=30.54;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:78:827,78,0 chrXII 832234 . A T 1309 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.14;MQ0=0;QD=30.44;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1342,123,0 chrXII 832249 . G T 1615 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.98;MQ0=0;QD=30.47;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1648,150,0 chrXII 832255 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.00;MQ0=0;QD=29.94;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1590,150,0 chrXII 832264 . G A 1497 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.71;MQ0=0;QD=30.55;SB=-6.870e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1530,141,0 chrXII 832282 . T C 1480 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=3.181;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.32;MQ0=0;MQRankSum=-1.199;QD=28.46;ReadPosRankSum=1.399;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1513,141,0 chrXII 832312 . G A 1952 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.019;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;MQRankSum=-0.255;QD=28.71;ReadPosRankSum=1.274;SB=-8.500e+02 GT:AD:DP:GQ:PL 1/1:1,67:68:99:1985,158,0 chrXII 832387 . G T 2142 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.492;DP=72;Dels=0.00;FS=3.388;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;MQRankSum=-0.577;QD=29.75;ReadPosRankSum=0.385;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2175,172,0 chrXII 832410 . C T 2129 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=32.26;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2162,199,0 chrXII 832594 . T G 1423 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.17;MQ0=0;QD=27.90;SB=-4.280e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1456,138,0 chrXII 832633 . C T 1155 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=27.50;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1188,108,0 chrXII 833476 . C T 1468 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.58;SB=-5.570e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1501,138,0 chrXII 833500 . T C 1457 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.49;SB=-5.220e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1490,144,0 chrXII 833540 . A T 1920 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.97;SB=-9.620e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1953,180,0 chrXII 833667 . A G 1357 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.56;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1390,129,0 chrXII 834053 . A G 1662 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.22;SB=-4.160e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1695,156,0 chrXII 834108 . A G 1296 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.80;SB=-3.850e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1329,129,0 chrXII 834769 . C T 1415 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.48;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1448,135,0 chrXII 834784 . G A 1397 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=31.04;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1430,132,0 chrXII 835013 . A G 1123 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=26.12;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1156,108,0 chrXII 835197 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=27.35;SB=-5.350e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1373,129,0 chrXII 835400 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.82;SB=-8.830e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1676,150,0 chrXII 835412 . C T 1730 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.32;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1763,159,0 chrXII 835497 . A T 1630 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=29.64;SB=-7.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1663,153,0 chrXII 835509 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=30.55;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1744,162,0 chrXII 835692 . G A 1581 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=61.01;MQ0=0;QD=29.83;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1614,150,0 chrXII 835791 . T C 1071 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=26.77;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1104,102,0 chrXII 836156 . G T 1420 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.21;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1453,132,0 chrXII 836689 . G A 1891 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.02;SB=-5.880e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1924,174,0 chrXII 837088 . T C 966 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.83;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:999,93,0 chrXII 840205 . C T 1542 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1575,144,0 chrXII 840577 . T C 1208 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.09;SB=-3.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1241,117,0 chrXII 840682 . T C 1263 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.26;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1296,120,0 chrXII 842770 . G A 2014 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.98;SB=-9.520e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2047,189,0 chrXII 843400 . T C 1630 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.64;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1663,162,0 chrXII 844293 . T C 1118 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.67;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1151,111,0 chrXII 844641 . T C 1078 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.37;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1111,105,0 chrXII 845025 . G A 1235 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.12;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1268,117,0 chrXII 849651 . T C 1095 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.59;SB=-3.550e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1128,105,0 chrXII 853275 . G C 1650 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.13;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1683,159,0 chrXII 855262 . C T 1391 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.660;QD=28.98;ReadPosRankSum=0.577;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1424,129,0 chrXII 855358 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=28.78;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1472,135,0 chrXII 855449 . C T 1760 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.88;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1793,165,0 chrXII 855577 . G A 1826 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.53;SB=-9.990e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1859,171,0 chrXII 855717 . C A 1112 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=30.05;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1145,108,0 chrXII 856042 . T A 1750 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=30.17;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1783,162,0 chrXII 856280 . T C 59.51 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.49;MQ0=0;QD=1.10;SB=-7.195e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:12:92,12,0 chrXII 856281 . C T 25.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=0.50;SB=-6.568e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:6:57,6,0 chrXII 856621 . T C 833 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.81;MQ0=0;QD=27.77;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:84:866,84,0 chrXII 856867 . A G 1400 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7262;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=25.45;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1433,135,0 chrXII 857000 . T A 718 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.62;SB=-2.270e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:69:751,69,0 chrXII 857019 . C T 935 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=23.37;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:87:968,87,0 chrXII 857473 . T C 1464 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.34;MQ0=0;QD=27.62;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1497,141,0 chrXII 857630 . G C 1564 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=27.93;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1597,150,0 chrXII 857745 . G A 1290 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=32.25;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1323,120,0 chrXII 858199 . T C 1332 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.75;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1365,132,0 chrXII 858427 . C T 1782 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.6342;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=30.20;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1815,168,0 chrXII 858544 . G A 1048 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.87;SB=-2.310e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1081,99,0 chrXII 859205 . G A 1858 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.97;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1891,174,0 chrXII 859351 . G T 1501 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=30.02;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,49:50:99:1534,141,0 chrXII 859459 . G A 1768 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.02;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1801,168,0 chrXII 859619 . A T 1723 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=29.71;SB=-7.190e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1756,159,0 chrXII 859630 . A G 1802 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.80;MQ0=0;QD=31.07;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1835,171,0 chrXII 860640 . C T 1524 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=1;QD=29.88;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1557,144,0 chrXII 860959 . G A 1239 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.81;SB=-4.930e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1272,117,0 chrXII 862078 . A G 1166 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.15;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1199,114,0 chrXII 939763 . G A 1449 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=1.7675;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=27.34;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1482,135,0 chrXII 944147 . C G 167.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.63;MQ0=47;MQRankSum=-0.793;QD=2.65;ReadPosRankSum=-0.453;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,14:63:37:197,0,37 chrXII 944238 . C A 33.77 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=7.43;MQ0=32;QD=0.94;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,12:36:6:65,6,0 chrXII 981001 . G A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;DP=50;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.17;MQ0=42;MQRankSum=1.067;QD=0.48;ReadPosRankSum=-0.572;SB=6.943e-03 GT:AD:DP:GQ:PL 0/1:47,3:50:40:54,0,40 chrXII 981002 . C T 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.589;DP=49;Dels=0.00;FS=3.680;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.25;MQ0=41;MQRankSum=1.067;QD=0.51;ReadPosRankSum=0.572;SB=4.213e-03 GT:AD:DP:GQ:PL 0/1:46,3:49:42:55,0,42 chrXII 981023 . C T 54.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.920;DP=44;Dels=0.00;FS=3.332;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=9.77;MQ0=36;MQRankSum=1.920;QD=1.23;ReadPosRankSum=1.221;SB=0.020 GT:AD:DP:GQ:PL 0/1:38,6:44:37:84,0,37 chrXII 981394 . A G 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410;DP=63;Dels=0.00;FS=30.430;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=22.39;MQ0=29;MQRankSum=1.896;QD=0.68;ReadPosRankSum=0.340;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:55,8:63:73:73,0,685 chrXII 1039435 . T A 1568 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.15;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1601,147,0 chrXIII 5306 . T C 35.77 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.20;MQ0=23;QD=1.43;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:23,2:25:6:67,6,0 chrXIII 24888 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.54;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1668,135,0 chrXIII 26576 . C T 31.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.419;DP=45;Dels=0.00;FS=51.943;HaplotypeScore=25.4466;MLEAC=1;MLEAF=0.500;MQ=57.92;MQ0=0;MQRankSum=-1.291;QD=0.69;ReadPosRankSum=-2.852;SB=-6.502e-03 GT:AD:DP:GQ:PL 0/1:36,9:45:61:61,0,465 chrXIII 34473 . T G 1754 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=32.48;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1787,150,0 chrXIII 70163 . A G 1450 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.36;SB=-7.550e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1483,126,0 chrXIII 70356 . C T 1271 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=62.71;MQ0=0;QD=29.56;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1304,108,0 chrXIII 71137 . A G 2310 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=5.2322;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=31.22;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2343,196,0 chrXIII 71382 . T C 1605 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=53.71;MQ0=0;QD=29.72;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1638,141,0 chrXIII 71390 . A C 1845 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.60;MQ0=0;QD=31.81;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1878,162,0 chrXIII 71397 . T C 1749 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.29;MQ0=0;QD=31.80;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1782,153,0 chrXIII 71867 . A T 1629 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=33.24;SB=-5.480e+02 GT:AD:DP:GQ:PL 1/1:0,48:49:99:1662,138,0 chrXIII 72027 . C T 1431 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=30.45;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1464,120,0 chrXIII 72351 . C A 1910 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=33.51;SB=-7.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1943,159,0 chrXIII 73368 . G A 2935 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.73;MQ0=0;QD=34.13;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2968,244,0 chrXIII 73993 . C T 3036 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.90;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:3069,250,0 chrXIII 74014 . C T 2888 PASS AC=2;AF=1.00;AN=2;DP=86;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.58;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,86:86:99:2921,238,0 chrXIII 74282 . C T 2431 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=33.76;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2464,205,0 chrXIII 74346 . C T 2379 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=33.99;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2412,199,0 chrXIII 74436 . C T 1345 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.80;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,40:41:99:1378,114,0 chrXIII 74599 . C T 2354 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=34.62;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2387,196,0 chrXIII 74632 . C T 1819 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=33.07;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1852,150,0 chrXIII 74704 . A G 2040 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6281;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=33.44;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,58:61:99:2073,166,0 chrXIII 75046 . C A 2609 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=34.33;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2642,217,0 chrXIII 75133 . G A 1734 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.53;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1767,147,0 chrXIII 75251 . G C 1987 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.86;MQ0=0;QD=32.57;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2020,169,0 chrXIII 75304 . T C 2132 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=33.31;SB=-4.720e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2165,184,0 chrXIII 75396 . T C 1724 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.48;SB=-6.410e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1757,147,0 chrXIII 75576 . A G 1765 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.92;SB=-4.440e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1798,150,0 chrXIII 75773 . A T 1718 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=29.62;SB=-6.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:1751,150,0 chrXIII 75781 . T A 2316 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=1.7803;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=33.09;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2349,202,0 chrXIII 76188 . C T 1346 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.30;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1379,114,0 chrXIII 76194 . A C 1366 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=25.77;SB=-6.910e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1399,117,0 chrXIII 76222 . A T 2189 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=33.68;SB=-1.108e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2222,184,0 chrXIII 76243 . A G 2532 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=32.88;SB=-1.095e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2565,217,0 chrXIII 76517 . A G 1808 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=32.87;SB=-5.740e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1841,159,0 chrXIII 76522 . A G 1559 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=28.35;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1592,135,0 chrXIII 76593 . C T 1813 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.26;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1846,156,0 chrXIII 76723 . A G 1910 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.3149;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.38;SB=-1.013e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1943,159,0 chrXIII 76932 . G C 1407 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.59;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1440,123,0 chrXIII 77019 . C G 1558 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.80;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1591,135,0 chrXIII 77482 . C T 1974 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=32.90;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2007,163,0 chrXIII 77737 . G A 1788 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.93;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1821,153,0 chrXIII 77739 . G C 1759 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.41;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1792,156,0 chrXIII 77879 . T G 1658 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.42;MQ0=0;QD=31.28;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1691,141,0 chrXIII 77934 . C T 679 PASS AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=32.33;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,21:21:60:712,60,0 chrXIII 77979 . T G 1042 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=32.56;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:93:1075,93,0 chrXIII 77997 . C T 1367 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=34.17;SB=-2.990e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1400,114,0 chrXIII 78097 . A G 1363 SnpCluster AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=3.3132;MLEAC=2;MLEAF=1.00;MQ=53.52;MQ0=0;QD=30.29;SB=-6.390e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1396,120,0 chrXIII 78101 . T C 1449 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=3.3107;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=30.83;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1482,129,0 chrXIII 78103 . A G 1489 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=53.26;MQ0=0;QD=31.68;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1522,129,0 chrXIII 78125 . C T 1711 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=55.12;MQ0=0;QD=31.69;SB=-8.720e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1744,144,0 chrXIII 78446 . T A 2124 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=33.19;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2157,178,0 chrXIII 78658 . T C 1446 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7621;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=32.86;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1479,123,0 chrXIII 78710 . A C 1792 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.98;MQ0=0;QD=30.90;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1825,153,0 chrXIII 78749 . T A 2127 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=33.76;SB=-3.600e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2160,178,0 chrXIII 78777 . T C 2260 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=32.75;SB=-4.630e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2293,193,0 chrXIII 78836 . A G 2588 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=29.08;SB=-1.084e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2621,220,0 chrXIII 78839 . G A 2623 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=29.81;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2656,220,0 chrXIII 78923 . C T 2417 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=31.80;SB=-1.070e+03 GT:AD:DP:GQ:PL 1/1:0,75:76:99:2450,202,0 chrXIII 79713 . T C 1850 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.91;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1883,156,0 chrXIII 79739 . C T 1670 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=29.82;SB=-9.580e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1703,138,0 chrXIII 79761 . T G 1727 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=3.757;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;MQRankSum=-0.638;QD=30.30;ReadPosRankSum=1.368;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1760,144,0 chrXIII 79783 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=31.81;SB=-7.180e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1719,144,0 chrXIII 79850 . A G 1308 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=29.73;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,43:44:99:1341,111,0 chrXIII 79968 . C T 967 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;QD=32.23;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:81:1000,81,0 chrXIII 80160 . C T 1573 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=28.09;SB=-6.160e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1606,132,0 chrXIII 80220 . G A 1961 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=33.81;SB=-9.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1994,162,0 chrXIII 80292 . T C 1985 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=34.22;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,57:58:99:2018,166,0 chrXIII 80403 . T C 1340 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=35.26;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1373,111,0 chrXIII 80527 . C T 1939 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.25;SB=-9.400e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1972,159,0 chrXIII 80887 . G A 1964 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=33.29;SB=-1.042e+03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1997,162,0 chrXIII 81063 . G A 1683 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4673;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;MQRankSum=0.483;QD=26.71;ReadPosRankSum=-0.426;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:1,60:63:99:1716,147,0 chrXIII 81072 . G A 1599 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.75;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1632,132,0 chrXIII 81111 . C T 2195 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.40;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2228,181,0 chrXIII 81228 . G A 1769 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=32.76;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1802,147,0 chrXIII 81243 . C T 1771 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=32.20;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1804,153,0 chrXIII 81991 . G A 1114 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.76;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:1147,93,0 chrXIII 82027 . A G 1272 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.06;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1305,114,0 chrXIII 82155 . G A 2131 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=34.37;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2164,175,0 chrXIII 82357 . A G 1591 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=33.85;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1624,135,0 chrXIII 83621 . G T 1287 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.9601;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.17;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1320,108,0 chrXIII 83905 . T C 1433 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.85;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1466,120,0 chrXIII 83964 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.63;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1436,117,0 chrXIII 84176 . T C 1418 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=26.75;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1451,123,0 chrXIII 84178 . G A 1451 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=27.90;SB=-6.270e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1484,120,0 chrXIII 84233 . T C 1560 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.97;MQ0=0;QD=34.67;SB=-2.160e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1593,132,0 chrXIII 84712 . C T 1492 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.74;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1525,126,0 chrXIII 84896 . A C 1595 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=34.67;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1628,135,0 chrXIII 85213 . G A 1811 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=34.17;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1844,147,0 chrXIII 85247 . T C 1543 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=32.15;SB=-1.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1576,132,0 chrXIII 85307 . G A 1174 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.61;SB=-5.630e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1207,96,0 chrXIII 85411 . T A 1041 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.53;SB=-3.670e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:1074,90,0 chrXIII 86212 . C T 1028 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:87:1061,87,0 chrXIII 86512 . G A 1338 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=32.63;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1371,111,0 chrXIII 86779 . A G 681 PASS AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.05;SB=-1.080e+02 GT:AD:DP:GQ:PL 1/1:0,20:20:60:714,60,0 chrXIII 86816 . T A 636 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.33;SB=-1.110e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:54:669,54,0 chrXIII 86906 . C T 889 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.14;MQ0=0;QD=32.93;SB=-3.801e+01 GT:AD:DP:GQ:PL 1/1:0,27:27:75:922,75,0 chrXIII 87110 . C T 542 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.88;SB=-3.801e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:575,45,0 chrXIII 87318 . T C 1717 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.08;MQ0=0;QD=33.67;SB=-1.810e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1750,144,0 chrXIII 87357 . A G 1587 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=33.06;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1620,135,0 chrXIII 87360 . T C 1499 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=32.59;SB=-7.301e+01 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1532,129,0 chrXIII 87448 . T C 1183 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.75;MQ0=0;QD=33.80;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1216,99,0 chrXIII 87584 . C T 1070 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.44;SB=-4.670e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:1103,90,0 chrXIII 87741 . G C 2046 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=32.48;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2079,175,0 chrXIII 87907 . C T 1153 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.03;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1186,96,0 chrXIII 88106 . T C 1062 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.95;SB=-4.750e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:93:1095,93,0 chrXIII 88125 . A G 1155 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.87;SB=-5.540e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1188,102,0 chrXIII 88188 . G A 1185 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.03;SB=-4.840e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1218,99,0 chrXIII 88266 . T C 1540 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=31.43;SB=-4.880e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1573,129,0 chrXIII 88377 . T C 2641 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=1.7845;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=32.21;SB=-1.359e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2674,223,0 chrXIII 88443 . T C 1886 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=31.97;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:59:99:1919,162,0 chrXIII 88542 . T C 1830 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.68;SB=-7.540e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1863,156,0 chrXIII 88808 . A T 2208 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.312;DP=66;Dels=0.00;FS=7.056;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;MQRankSum=-1.207;QD=33.45;ReadPosRankSum=-0.787;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:2241,150,0 chrXIII 89001 . C T 1801 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.31;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1834,147,0 chrXIII 89059 . T G 1934 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=30.70;SB=-8.030e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1967,168,0 chrXIII 89321 . T C 2304 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.00;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2337,190,0 chrXIII 89325 . A C 2189 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.72;SB=-1.137e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2222,187,0 chrXIII 89355 . T A 2046 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.48;SB=-1.056e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2079,172,0 chrXIII 89556 . T C 1541 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=32.79;SB=-7.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1574,132,0 chrXIII 89571 . T C 1497 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=34.02;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1530,126,0 chrXIII 89649 . T A 2067 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.03;SB=-9.910e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2100,172,0 chrXIII 89691 . A G 1995 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.00;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2028,168,0 chrXIII 89806 . T C 1608 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=33.50;SB=-6.000e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1641,138,0 chrXIII 89860 . C T 1901 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=34.56;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1934,159,0 chrXIII 89876 . C T 2022 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=34.27;SB=-7.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2055,168,0 chrXIII 90773 . A G 1675 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.37;MQ0=0;QD=32.84;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1708,141,0 chrXIII 90833 . G C 1364 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.79;MQ0=0;QD=30.31;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1397,120,0 chrXIII 90865 . A G 1218 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=1.3670;MLEAC=2;MLEAF=1.00;MQ=56.58;MQ0=0;QD=26.48;SB=-2.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1251,108,0 chrXIII 91086 . A G 1965 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.21;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1998,169,0 chrXIII 91149 . G A 2377 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=34.96;SB=-1.141e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2410,196,0 chrXIII 91448 . A G 1719 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=3.2902;MLEAC=2;MLEAF=1.00;MQ=55.03;MQ0=0;QD=30.16;SB=-7.490e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1752,150,0 chrXIII 91485 . G A 1323 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.181;DP=45;Dels=0.00;FS=3.424;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=54.76;MQ0=0;MQRankSum=0.236;QD=29.40;ReadPosRankSum=0.551;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:87:1356,87,0 chrXIII 91527 . A G 1455 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=29.10;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1488,126,0 chrXIII 91532 . T C 1579 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=53.45;MQ0=0;QD=32.22;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1612,135,0 chrXIII 91587 . G A 1400 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=29.79;SB=-4.970e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1433,120,0 chrXIII 91597 . G A 1337 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.73;MQ0=0;QD=31.83;SB=-4.380e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1370,117,0 chrXIII 91667 . A G 1579 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=31.58;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1612,141,0 chrXIII 91733 . G C 861 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.21;MQ0=0;QD=28.70;SB=-3.120e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:75:894,75,0 chrXIII 91890 . A G 512 PASS AC=2;AF=1.00;AN=2;DP=17;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.39;MQ0=0;QD=30.12;SB=-7.001e+01 GT:AD:DP:GQ:PL 1/1:0,17:17:45:545,45,0 chrXIII 91960 . G C 1221 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.93;MQ0=0;QD=28.40;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1254,114,0 chrXIII 92218 . C T 1368 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=33.37;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1401,117,0 chrXIII 92384 . C T 1073 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.32;MQ0=0;QD=33.53;SB=-4.730e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:93:1106,93,0 chrXIII 92531 . G A 1460 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.29;MQ0=0;QD=35.61;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1493,123,0 chrXIII 93032 . G T 2170 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.38;SB=-5.800e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2203,178,0 chrXIII 93563 . C T 2033 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=35.67;SB=-8.880e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2066,172,0 chrXIII 93961 . A G 1860 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=29.52;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,62:63:99:1893,162,0 chrXIII 93980 . T C 1878 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=33.54;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1911,162,0 chrXIII 94572 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=30.27;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1486,123,0 chrXIII 94695 . C T 1757 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.54;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1790,147,0 chrXIII 94898 . G C 1585 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=2.5338;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.82;SB=-8.340e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1618,138,0 chrXIII 94977 . A G 1451 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.24;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1484,123,0 chrXIII 95182 . G A 2128 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=34.32;SB=-6.380e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2161,175,0 chrXIII 95216 . C T 1928 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=34.43;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1961,159,0 chrXIII 95343 . A C 1791 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.79;SB=-6.960e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1824,153,0 chrXIII 158421 . G A 83.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.040;DP=40;Dels=0.05;FS=72.590;HaplotypeScore=7.8054;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=0.142;QD=2.08;ReadPosRankSum=-2.862;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:28,10:38:99:113,0,169 chrXIII 158433 . T A 73.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.747;DP=43;Dels=0.00;FS=94.171;HaplotypeScore=7.5306;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=1.415;QD=1.70;ReadPosRankSum=-4.191;SB=0.079 GT:AD:DP:GQ:PL 0/1:30,13:43:99:103,0,266 chrXIII 167959 . T C 1449 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.04;MQ0=0;QD=30.19;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1482,123,0 chrXIII 168084 . C T 1633 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.20;MQ0=0;QD=32.66;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1666,138,0 chrXIII 168139 . C T 1137 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=30.73;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1170,99,0 chrXIII 168229 . T C 1149 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=30.24;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1182,96,0 chrXIII 168709 . T C 428 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=44.70;MQ0=0;QD=13.81;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:39:461,39,0 chrXIII 168744 . T C 1071 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=24.91;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:93:1104,93,0 chrXIII 168773 . T C 1883 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=36.21;SB=-3.890e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1916,156,0 chrXIII 168900 . T G 746 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.46;MQ0=0;QD=24.06;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:69:779,69,0 chrXIII 168947 . T G 1255 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=31.37;SB=-5.300e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1288,108,0 chrXIII 169412 . T G 1591 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=34.59;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1624,132,0 chrXIII 169962 . T C 1419 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=32.25;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1452,117,0 chrXIII 170004 . T A 1461 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=31.76;SB=-6.250e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1494,120,0 chrXIII 170099 . T A 2436 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=33.37;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2469,205,0 chrXIII 170932 . T C 1920 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=30.00;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1953,168,0 chrXIII 171523 . A G 1297 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.43;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1330,111,0 chrXIII 171785 . T C 1355 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.26;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1388,111,0 chrXIII 171896 . A C 1464 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=29.88;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1497,126,0 chrXIII 172523 . C A 1002 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=34.55;SB=-2.960e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:1035,84,0 chrXIII 172685 . T C 1048 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=32.75;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:1081,90,0 chrXIII 172925 . C T 1753 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9650;MLEAC=2;MLEAF=1.00;MQ=51.61;MQ0=0;MQRankSum=-0.619;QD=31.30;ReadPosRankSum=-0.742;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1786,150,0 chrXIII 172935 . G A 1819 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.7872;MLEAC=2;MLEAF=1.00;MQ=52.21;MQ0=0;QD=30.32;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1852,156,0 chrXIII 172936 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.7880;MLEAC=2;MLEAF=1.00;MQ=52.07;MQ0=0;QD=30.47;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1831,153,0 chrXIII 173057 . T C 1899 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=2.9962;MLEAC=2;MLEAF=1.00;MQ=58.90;MQ0=0;QD=32.19;SB=-6.330e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1932,165,0 chrXIII 173124 . G A 1111 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=34.72;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:93:1144,93,0 chrXIII 173282 . T C 1858 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.02;FS=0.000;HaplotypeScore=4.9130;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=28.15;SB=-1.003e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1891,156,0 chrXIII 173453 . A G 2464 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=33.30;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2497,214,0 chrXIII 173678 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.62;MQ0=0;QD=33.46;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2074,172,0 chrXIII 173711 . A G 2469 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=33.36;SB=-9.720e+02 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2502,208,0 chrXIII 173888 . T C 1267 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=5.7452;MLEAC=2;MLEAF=1.00;MQ=57.16;MQ0=0;QD=29.47;SB=-4.650e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1300,111,0 chrXIII 174577 . A G 1221 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.13;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1254,102,0 chrXIII 174980 . T A 2274 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.35;MQ0=0;QD=32.03;SB=-1.038e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2307,190,0 chrXIII 174982 . C T 2329 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=34.25;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2362,196,0 chrXIII 175074 . G C 2369 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=34.33;SB=-1.064e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2402,202,0 chrXIII 175545 . T C 1906 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;QD=27.62;SB=-1.122e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:1939,162,0 chrXIII 175777 . A G 2263 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=31.87;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2296,196,0 chrXIII 175936 . C T 82.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.520;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.88;MQ0=0;MQRankSum=0.216;QD=1.71;ReadPosRankSum=-4.811;SB=-6.701e+01 GT:AD:DP:GQ:PL 0/1:38,10:48:99:112,0,660 chrXIII 176006 . C T 1262 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.88;MQ0=0;QD=31.55;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1295,105,0 chrXIII 176077 . T A 1455 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=1.8332;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=33.84;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1488,120,0 chrXIII 176087 . T C 1270 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=30.98;SB=-4.710e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1303,108,0 chrXIII 176141 . C T 1766 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.666;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;MQRankSum=-1.333;QD=33.96;ReadPosRankSum=1.532;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:99:1799,147,0 chrXIII 176260 . C T 1393 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=31.66;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1426,117,0 chrXIII 176730 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.22;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2189,184,0 chrXIII 176890 . C T 1378 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=35.33;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1411,114,0 chrXIII 176942 . A G 1524 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=34.64;SB=-5.320e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1557,126,0 chrXIII 177237 . T C 1663 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=32.61;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1696,141,0 chrXIII 177392 . T C 2078 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.67;MQ0=0;QD=29.69;SB=-1.093e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2111,175,0 chrXIII 177484 . C T 1772 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=31.64;SB=-9.270e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1805,147,0 chrXIII 177745 . G T 2620 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=34.03;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2653,220,0 chrXIII 177928 . C T 1357 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=34.79;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1390,114,0 chrXIII 178128 . A G 1953 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=29.59;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1986,166,0 chrXIII 178207 . G T 2008 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.64;MQ0=0;QD=32.39;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2041,169,0 chrXIII 178920 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=31.33;SB=-5.150e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1255,105,0 chrXIII 179054 . C T 1750 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=33.02;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1783,144,0 chrXIII 179112 . T A 1621 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=33.08;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1654,135,0 chrXIII 180563 . A G 1497 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=33.27;SB=-5.790e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1530,126,0 chrXIII 183318 . G A 1187 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.97;SB=-6.420e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1220,99,0 chrXIII 190481 . C T 2005 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.02;MQ0=0;QD=32.34;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2038,168,0 chrXIII 190550 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.95;MQ0=0;QD=31.89;SB=-8.970e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1723,144,0 chrXIII 191033 . A C 2091 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=29.04;SB=-8.600e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2124,181,0 chrXIII 191318 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=33.03;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:96:1156,96,0 chrXIII 191452 . T C 1455 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.50;MQ0=0;QD=30.96;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1488,126,0 chrXIII 191551 . G A 2260 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.684;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.30;MQ0=0;MQRankSum=-0.722;QD=31.39;ReadPosRankSum=-0.722;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2293,167,0 chrXIII 191569 . T C 2100 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=51.47;MQ0=0;MQRankSum=-0.048;QD=29.17;ReadPosRankSum=-1.732;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2133,152,0 chrXIII 191574 . G A 2099 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.417;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.29;MQ0=0;MQRankSum=-0.105;QD=31.80;ReadPosRankSum=-1.575;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,65:66:99:2132,153,0 chrXIII 191860 . G T 1731 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=34.62;SB=-8.080e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1764,141,0 chrXIII 191932 . A T 1112 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=31.77;SB=-5.080e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1145,96,0 chrXIII 192013 . C T 142.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567;DP=58;Dels=0.00;FS=117.469;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=45.11;MQ0=0;MQRankSum=-0.869;QD=2.45;ReadPosRankSum=-4.882;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:44,14:58:99:172,0,521 chrXIII 192014 . A T 140.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623;DP=58;Dels=0.00;FS=107.357;HaplotypeScore=1.8273;MLEAC=1;MLEAF=0.500;MQ=45.11;MQ0=0;MQRankSum=-1.341;QD=2.41;ReadPosRankSum=-4.422;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:45,13:58:99:170,0,531 chrXIII 192045 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=29.14;SB=-4.060e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1257,102,0 chrXIII 192047 . C T 1224 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.69;MQ0=0;QD=29.14;SB=-4.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:42:99:1257,102,0 chrXIII 192110 . T C 1794 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=32.04;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1827,150,0 chrXIII 192147 . C T 1484 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=27.48;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1517,138,0 chrXIII 192203 . G A 1396 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=57.64;MQ0=0;QD=31.73;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1429,120,0 chrXIII 192208 . A G 1317 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.46;MQ0=0;QD=32.12;SB=-5.530e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1350,114,0 chrXIII 192291 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.14;MQ0=0;QD=33.31;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1965,162,0 chrXIII 192332 . T C 1115 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=30.97;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1148,96,0 chrXIII 192338 . G A 1189 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=33.03;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1222,99,0 chrXIII 192359 . C T 1372 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=32.67;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1405,114,0 chrXIII 192396 . C T 1392 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=33.95;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1425,114,0 chrXIII 192414 . A G 1468 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=32.62;SB=-2.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1501,126,0 chrXIII 192432 . T C 1421 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=29.60;SB=-3.330e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1454,120,0 chrXIII 192436 . T C 1453 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.05;MQ0=0;QD=30.27;SB=-2.650e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1486,120,0 chrXIII 193709 . C A 2365 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=30.71;SB=-1.367e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2398,196,0 chrXIII 193882 . G A 1370 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.25;SB=-6.630e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1403,114,0 chrXIII 194164 . C T 1753 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.78;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1786,144,0 chrXIII 194425 . T G 1375 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=33.54;SB=-5.980e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1408,117,0 chrXIII 194614 . T C 2118 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=30.26;SB=-7.740e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2151,175,0 chrXIII 195045 . C A 1766 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.85;MQ0=0;QD=33.32;SB=-9.040e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1799,144,0 chrXIII 195084 . G A 1829 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.027;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.9125;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;MQRankSum=-1.668;QD=33.25;ReadPosRankSum=-0.449;SB=-9.630e+02 GT:AD:DP:GQ:PL 1/1:1,53:55:99:1862,120,0 chrXIII 195227 . A G 2025 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=34.32;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2058,172,0 chrXIII 195282 . A G 1968 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=30.28;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2001,166,0 chrXIII 195330 . C A 2050 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=35.34;SB=-1.030e+03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2083,172,0 chrXIII 195393 . A G 1556 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=31.12;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1589,135,0 chrXIII 195417 . T C 1322 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.37;MQ0=0;QD=30.74;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1355,111,0 chrXIII 195423 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=30.17;SB=-6.900e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1270,102,0 chrXIII 195693 . T A 1895 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=33.84;SB=-5.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1928,159,0 chrXIII 195714 . A G 2024 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.27;MQ0=0;QD=30.67;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2057,171,0 chrXIII 195860 . A T 1643 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.11;MQ0=0;QD=34.23;SB=-8.250e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1676,138,0 chrXIII 195984 . T A 1309 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.02;FS=0.000;HaplotypeScore=1.9330;MLEAC=2;MLEAF=1.00;MQ=50.20;MQ0=0;QD=29.09;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1342,111,0 chrXIII 196123 . A G 1100 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=28.95;SB=-2.750e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1133,96,0 chrXIII 202190 . C G 334 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.06;MQ0=8;QD=5.39;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:8,54:62:33:367,33,0 chrXIII 202193 . A G 335 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.10;MQ0=8;QD=5.32;SB=-1.087e-02 GT:AD:DP:GQ:PL 1/1:8,55:63:33:368,33,0 chrXIII 202206 . T C 535 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=2;QD=10.29;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:2,50:52:51:568,51,0 chrXIII 202207 . T A 535 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.44;MQ0=2;QD=10.29;SB=-6.588e-03 GT:AD:DP:GQ:PL 1/1:2,50:52:51:568,51,0 chrXIII 202222 . A C 731 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.98;MQ0=0;QD=12.60;SB=-3.401e+01 GT:AD:DP:GQ:PL 1/1:0,58:58:69:764,69,0 chrXIII 202269 . C T 1562 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=22.97;SB=-2.420e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1595,135,0 chrXIII 202482 . A G 1702 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.61;MQ0=0;QD=30.39;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1735,147,0 chrXIII 207364 . A G 1465 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=1.4972;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.17;SB=-7.300e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1498,123,0 chrXIII 207751 . G A 1643 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=35.72;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1676,135,0 chrXIII 207757 . A G 1526 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=34.68;SB=-7.260e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1559,129,0 chrXIII 207880 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.55;SB=-6.370e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1744,147,0 chrXIII 208048 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=30.28;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1668,138,0 chrXIII 208108 . C T 1893 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=33.80;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1926,159,0 chrXIII 208201 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.65;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1837,153,0 chrXIII 208877 . C T 1654 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.674;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.93;MQ0=0;MQRankSum=-0.499;QD=28.03;ReadPosRankSum=1.204;SB=-7.250e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1687,141,0 chrXIII 208989 . T A 1413 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.320;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.44;MQ0=0;MQRankSum=1.485;QD=33.64;ReadPosRankSum=1.650;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:1446,120,0 chrXIII 209014 . G A 1263 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=32.38;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1296,105,0 chrXIII 209027 . T G 1276 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=31.90;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1309,111,0 chrXIII 209233 . C T 1370 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=31.14;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1403,114,0 chrXIII 209449 . C G 2882 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=1.5616;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=32.75;SB=-1.316e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2915,247,0 chrXIII 209680 . G A 1678 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=1.3123;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=31.07;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1711,141,0 chrXIII 209924 . C T 2527 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.62;MQ0=0;QD=33.69;SB=-1.352e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2560,208,0 chrXIII 210513 . G A 1487 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.02;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=31.64;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1520,123,0 chrXIII 210532 . G T 1608 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=31.53;SB=-6.620e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1641,135,0 chrXIII 210609 . G A 1361 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.96;SB=-4.790e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1394,114,0 chrXIII 210688 . G A 1565 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=31.30;SB=-7.730e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1598,132,0 chrXIII 210877 . G C 1431 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.28;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1464,120,0 chrXIII 210889 . A G 1429 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.02;SB=-4.810e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1462,120,0 chrXIII 210922 . T A 1763 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.57;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1796,141,0 chrXIII 211049 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.37;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1635,135,0 chrXIII 211216 . G A 1539 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=33.46;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1572,129,0 chrXIII 211462 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=34.06;SB=-6.290e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1634,135,0 chrXIII 211471 . A T 1573 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=34.20;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1606,132,0 chrXIII 211566 . T C 1719 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=35.08;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1752,147,0 chrXIII 212132 . G A 1303 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.89;MQ0=0;QD=31.02;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1336,108,0 chrXIII 212592 . C G 2150 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=32.09;SB=-6.130e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2183,184,0 chrXIII 212732 . A G 1697 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.27;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1730,144,0 chrXIII 212836 . G A 1855 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.35;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1888,153,0 chrXIII 212859 . T C 1575 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.471;DP=54;Dels=0.00;FS=5.482;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;MQRankSum=0.490;QD=29.17;ReadPosRankSum=0.621;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:1,52:54:99:1608,101,0 chrXIII 213947 . C T 1277 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.20;MQ0=0;QD=32.74;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1310,108,0 chrXIII 213972 . G A 1234 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=33.35;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1267,105,0 chrXIII 214086 . C T 1237 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=22.49;SB=-7.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1270,105,0 chrXIII 214378 . A G 1170 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.50;SB=-4.020e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1203,99,0 chrXIII 215334 . T C 1850 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=32.46;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1883,159,0 chrXIII 215391 . A G 1836 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=31.66;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1869,159,0 chrXIII 215544 . C T 1593 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.98;MQ0=0;QD=32.51;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1626,132,0 chrXIII 215595 . T C 1535 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.66;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1568,129,0 chrXIII 215788 . C A 2088 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=33.68;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2121,175,0 chrXIII 215820 . C A 2268 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=33.35;SB=-8.350e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2301,187,0 chrXIII 215994 . T C 1728 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=32.00;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1761,147,0 chrXIII 216027 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=31.63;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1583,129,0 chrXIII 216100 . A G 1563 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=33.98;SB=-5.970e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1596,132,0 chrXIII 216105 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=34.50;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1620,132,0 chrXIII 216321 . A C 1116 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.16;MQ0=0;QD=29.37;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:96:1149,96,0 chrXIII 216327 . C A 1298 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=30.90;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:1331,111,0 chrXIII 216689 . T C 2238 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=33.91;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2271,193,0 chrXIII 216942 . A T 1516 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.289;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.83;MQ0=0;MQRankSum=1.155;QD=31.58;ReadPosRankSum=1.011;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:95:1549,95,0 chrXIII 217030 . T G 1808 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.11;SB=-7.620e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1841,153,0 chrXIII 217312 . C A 2275 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.00;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:2308,187,0 chrXIII 217381 . A G 1932 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=3.2637;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=32.75;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1965,165,0 chrXIII 217508 . G A 2244 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=33.49;SB=-1.140e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2277,184,0 chrXIII 217557 . A C 1449 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=30.19;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1482,123,0 chrXIII 217558 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=30.62;SB=-7.450e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1472,123,0 chrXIII 217640 . G A 1434 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.68;SB=-5.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1467,129,0 chrXIII 217641 . G A 1432 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.08;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1465,129,0 chrXIII 218060 . C T 1216 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=34.74;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1249,102,0 chrXIII 218127 . A G 1202 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=31.63;SB=-3.790e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1235,102,0 chrXIII 218501 . C T 1449 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=31.50;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,45:46:99:1482,120,0 chrXIII 218597 . T C 1559 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.024;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=0.752;QD=30.57;ReadPosRankSum=-0.073;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:2,49:51:99:1592,104,0 chrXIII 218615 . C T 1556 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.429;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;MQRankSum=-0.177;QD=31.76;ReadPosRankSum=0.935;SB=-7.090e+02 GT:AD:DP:GQ:PL 1/1:2,47:49:99:1589,101,0 chrXIII 218696 . C T 1557 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.94;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1590,132,0 chrXIII 218786 . G A 2137 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=32.88;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2170,178,0 chrXIII 218827 . A T 1681 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.670;DP=56;Dels=0.00;FS=3.168;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;MQRankSum=0.062;QD=30.02;ReadPosRankSum=1.237;SB=-8.780e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1714,144,0 chrXIII 218882 . T C 2016 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=32.52;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2049,172,0 chrXIII 218904 . G A 2497 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.686;DP=76;Dels=0.00;FS=3.565;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;MQRankSum=-0.208;QD=32.86;ReadPosRankSum=0.855;SB=-1.142e+03 GT:AD:DP:GQ:PL 1/1:1,75:76:99:2530,180,0 chrXIII 218963 . C T 2799 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=35.88;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2832,229,0 chrXIII 219146 . T C 1690 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.80;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1723,144,0 chrXIII 219311 . T C 1983 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=33.05;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2016,166,0 chrXIII 219326 . G A 2219 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=34.14;SB=-1.004e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2252,184,0 chrXIII 219608 . T C 1879 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=29.83;SB=-7.440e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1912,162,0 chrXIII 219620 . A G 2056 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=32.12;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:2089,175,0 chrXIII 219807 . A G 1826 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.34;MQ0=0;QD=28.09;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1859,159,0 chrXIII 219863 . T C 1791 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=1.6006;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=28.89;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1824,150,0 chrXIII 220308 . A G 1621 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.17;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1654,138,0 chrXIII 220596 . G A 1803 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=32.20;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1836,147,0 chrXIII 221642 . T C 2074 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.92;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2107,178,0 chrXIII 221882 . G A 1698 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.79;SB=-9.800e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1731,144,0 chrXIII 232814 . G A 1810 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=34.81;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1843,150,0 chrXIII 238793 . A T 123.11 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.719;DP=64;Dels=0.00;FS=180.487;HaplotypeScore=56.4949;MLEAC=1;MLEAF=0.500;MQ=54.31;MQ0=0;MQRankSum=-1.428;QD=1.92;ReadPosRankSum=-6.828;SB=-3.124e+00 GT:AD:DP:GQ:PL 0/1:28,36:64:13:153,0,13 chrXIII 238797 . C T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140;DP=62;Dels=0.00;FS=43.664;HaplotypeScore=61.5573;MLEAC=1;MLEAF=0.500;MQ=54.64;MQ0=0;MQRankSum=-2.292;QD=0.58;ReadPosRankSum=-2.748;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:44,18:62:66:66,0,110 chrXIII 238806 . G T 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.615;DP=39;Dels=0.00;FS=77.619;HaplotypeScore=4.6796;MLEAC=1;MLEAF=0.500;MQ=55.84;MQ0=0;MQRankSum=-1.656;QD=2.54;ReadPosRankSum=-4.455;SB=1.45 GT:AD:DP:GQ:PL 0/1:29,10:39:50:129,0,50 chrXIII 244001 . G C 1369 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.13;SB=-7.370e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1402,120,0 chrXIII 249505 . G A 2624 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=34.08;SB=-1.190e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2657,217,0 chrXIII 325905 . T A 1366 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.32;SB=-6.140e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1399,114,0 chrXIII 344260 . A G 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268;DP=54;Dels=0.00;FS=11.429;HaplotypeScore=2.3117;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=1.969;QD=0.65;ReadPosRankSum=1.522;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,21:54:65:65,0,634 chrXIII 361550 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;DP=3;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.78;MQ0=1;QD=7.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,3:3:6:55,6,0 chrXIII 448333 . G A 35.97 filter AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=0.75;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:9:68,9,0 chrXIII 448334 . A G 35.97 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=0.77;SB=-6.640e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:9:68,9,0 chrXIII 483768 . G A 18.07 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.624;DP=45;Dels=0.00;FS=44.338;HaplotypeScore=8.2161;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-0.888;QD=0.40;ReadPosRankSum=-2.737;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:40,5:45:48:48,0,161 chrXIII 508047 . G T 159.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.113;DP=61;Dels=0.00;FS=82.350;HaplotypeScore=13.5767;MLEAC=1;MLEAF=0.500;MQ=57.06;MQ0=0;MQRankSum=-0.507;QD=2.61;ReadPosRankSum=-1.440;SB=-3.786e-03 GT:AD:DP:GQ:PL 0/1:44,17:61:99:189,0,1083 chrXIII 571267 . G A 91.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.533;DP=62;Dels=0.02;FS=77.929;HaplotypeScore=2.8323;MLEAC=1;MLEAF=0.500;MQ=58.41;MQ0=0;MQRankSum=-1.834;QD=1.47;ReadPosRankSum=-5.060;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,30:61:99:121,0,171 chrXIII 580067 . C G 1870 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.39;SB=-8.510e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1903,162,0 chrXIII 622360 . G T 1940 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=34.04;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1973,162,0 chrXIII 624827 . G A 1781 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.263;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9967;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;MQRankSum=-1.497;QD=30.19;ReadPosRankSum=0.793;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:1,58:59:99:1814,132,0 chrXIII 624829 . G T 1846 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=32.39;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1879,159,0 chrXIII 672129 . T C 1841 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.20;SB=-8.190e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1874,159,0 chrXIII 674889 . C T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663;DP=41;Dels=0.00;FS=21.464;HaplotypeScore=17.5432;MLEAC=1;MLEAF=0.500;MQ=59.44;MQ0=0;MQRankSum=-0.015;QD=1.66;ReadPosRankSum=-2.280;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,11:41:98:98,0,544 chrXIII 680936 . T C 133.06 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=2.33;SB=-8.431e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:21:166,21,0 chrXIII 680940 . C T 136.06 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=2.47;SB=-8.911e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:21:169,21,0 chrXIII 739012 . T C 2212 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.01;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2245,187,0 chrXIII 756842 . G T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982;DP=31;Dels=0.03;FS=33.274;HaplotypeScore=2.9162;MLEAC=1;MLEAF=0.500;MQ=60.35;MQ0=0;MQRankSum=0.349;QD=0.37;ReadPosRankSum=-0.503;SB=0.205 GT:AD:DP:GQ:PL 0/1:22,8:30:41:41,0,212 chrXIII 772695 . C T 83.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.912;DP=32;Dels=0.00;FS=63.947;HaplotypeScore=14.7535;MLEAC=1;MLEAF=0.500;MQ=54.14;MQ0=0;MQRankSum=-0.331;QD=2.59;ReadPosRankSum=-3.017;SB=-3.008e+00 GT:AD:DP:GQ:PL 0/1:20,12:32:99:113,0,273 chrXIII 809198 . A G 1758 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=32.56;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1791,144,0 chrXIII 851747 . T A 63.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.795;DP=42;Dels=0.00;FS=90.268;HaplotypeScore=27.1410;MLEAC=1;MLEAF=0.500;MQ=59.45;MQ0=0;MQRankSum=1.734;QD=1.50;ReadPosRankSum=-4.343;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:21,21:42:93:93,0,420 chrXIII 870442 . G T 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421;DP=56;Dels=0.00;FS=14.756;HaplotypeScore=2.5310;MLEAC=1;MLEAF=0.500;MQ=58.76;MQ0=0;MQRankSum=1.082;QD=0.31;ReadPosRankSum=-3.374;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,8:56:47:47,0,1027 chrXIII 908185 . A G 1012.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087;DP=97;Dels=0.00;FS=5.156;HaplotypeScore=2.4167;MLEAC=1;MLEAF=0.500;MQ=40.85;MQ0=0;MQRankSum=-3.551;QD=10.43;ReadPosRankSum=-1.562;SB=-2.130e+02 GT:AD:DP:GQ:PL 0/1:44,53:97:99:1042,0,823 chrXIII 908196 . G C 1184.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.936;DP=105;Dels=0.00;FS=8.164;HaplotypeScore=3.5433;MLEAC=1;MLEAF=0.500;MQ=42.54;MQ0=0;MQRankSum=-3.238;QD=11.28;ReadPosRankSum=-3.681;SB=-2.070e+02 GT:AD:DP:GQ:PL 0/1:44,61:105:99:1214,0,770 chrXIII 908198 . G T 1166.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.675;DP=106;Dels=0.00;FS=7.980;HaplotypeScore=3.5433;MLEAC=1;MLEAF=0.500;MQ=42.74;MQ0=0;MQRankSum=-3.227;QD=11.00;ReadPosRankSum=-3.596;SB=-1.560e+02 GT:AD:DP:GQ:PL 0/1:46,60:106:99:1196,0,830 chrXIII 908203 . G A 1293.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.802;DP=107;Dels=0.00;FS=6.387;HaplotypeScore=2.8093;MLEAC=1;MLEAF=0.500;MQ=43.78;MQ0=0;MQRankSum=-2.732;QD=12.08;ReadPosRankSum=-3.568;SB=-3.100e+02 GT:AD:DP:GQ:PL 0/1:44,63:107:99:1323,0,854 chrXIII 908218 . C T 1145.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.363;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.9950;MLEAC=1;MLEAF=0.500;MQ=45.47;MQ0=1;MQRankSum=-3.205;QD=11.68;ReadPosRankSum=-2.997;SB=-5.060e+02 GT:AD:DP:GQ:PL 0/1:37,61:98:99:1175,0,822 chrXIII 908365 . A G 50.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.456;DP=105;Dels=0.00;FS=6.697;HaplotypeScore=11.5607;MLEAC=1;MLEAF=0.500;MQ=49.72;MQ0=0;MQRankSum=-2.681;QD=0.48;ReadPosRankSum=-2.436;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:85,20:105:80:80,0,2011 chrXIII 908522 . T G 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.193;DP=145;Dels=0.00;FS=16.468;HaplotypeScore=18.3020;MLEAC=1;MLEAF=0.500;MQ=51.79;MQ0=0;MQRankSum=-4.629;QD=0.68;ReadPosRankSum=-1.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:129,16:145:99:129,0,3258 chrXIII 908527 . A G 237.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.259;DP=167;Dels=0.00;FS=32.004;HaplotypeScore=19.3747;MLEAC=1;MLEAF=0.500;MQ=50.19;MQ0=0;MQRankSum=-5.626;QD=1.42;ReadPosRankSum=0.235;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:144,23:167:99:267,0,3392 chrXIII 908545 . A G 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DP=152;Dels=0.00;FS=22.871;HaplotypeScore=8.7592;MLEAC=1;MLEAF=0.500;MQ=50.49;MQ0=0;MQRankSum=-4.974;QD=0.61;ReadPosRankSum=2.981;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,16:152:99:122,0,3349 chrXIII 908552 . C T 86.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.963;DP=152;Dels=0.00;FS=22.852;HaplotypeScore=55.6785;MLEAC=1;MLEAF=0.500;MQ=50.49;MQ0=0;MQRankSum=-5.112;QD=0.57;ReadPosRankSum=4.464;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:136,16:152:99:116,0,3390 chrXIII 908563 . A G 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.233;DP=143;Dels=0.00;FS=23.029;HaplotypeScore=73.3834;MLEAC=1;MLEAF=0.500;MQ=49.62;MQ0=0;MQRankSum=-4.427;QD=0.68;ReadPosRankSum=2.785;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,24:143:99:127,0,2261 chrXIII 908581 . A G 98.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.322;DP=130;Dels=0.00;FS=22.646;HaplotypeScore=48.9532;MLEAC=1;MLEAF=0.500;MQ=49.93;MQ0=0;MQRankSum=-4.475;QD=0.75;ReadPosRankSum=-0.379;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,16:130:99:128,0,2878 chrXIII 908592 . C T 134.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.420;DP=119;Dels=0.00;FS=17.282;HaplotypeScore=31.9464;MLEAC=1;MLEAF=0.500;MQ=49.51;MQ0=0;MQRankSum=-4.861;QD=1.13;ReadPosRankSum=-2.126;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:96,15:119:99:164,0,2456 chrXIII 908594 . T G 442.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.040;DP=121;Dels=0.00;FS=39.143;HaplotypeScore=31.9464;MLEAC=1;MLEAF=0.500;MQ=49.65;MQ0=0;MQRankSum=-7.362;QD=3.65;ReadPosRankSum=-3.118;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:84,37:121:99:472,0,2380 chrXIII 908611 . G A 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=83;Dels=0.00;FS=2.602;HaplotypeScore=18.6073;MLEAC=1;MLEAF=0.500;MQ=53.91;MQ0=0;MQRankSum=-2.320;QD=0.58;ReadPosRankSum=-3.137;SB=-6.901e+01 GT:AD:DP:GQ:PL 0/1:65,13:83:78:78,0,2001 chrXIII 908617 . G A 109.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.178;DP=71;Dels=0.00;FS=1.136;HaplotypeScore=10.7982;MLEAC=1;MLEAF=0.500;MQ=54.78;MQ0=0;MQRankSum=-4.747;QD=1.54;ReadPosRankSum=-4.863;SB=-7.401e+01 GT:AD:DP:GQ:PL 0/1:57,14:71:99:139,0,1839 chrXIII 924341 . G T 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DP=13;Dels=0.00;FS=10.414;HaplotypeScore=1.8055;MLEAC=1;MLEAF=0.500;MQ=33.84;MQ0=1;MQRankSum=0.600;QD=14.15;ReadPosRankSum=0.929;SB=0.076 GT:AD:DP:GQ:PL 0/1:5,8:13:28:214,0,28 chrXIII 924373 . G T 42.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=1.7882;MLEAC=2;MLEAF=1.00;MQ=22.13;MQ0=1;MQRankSum=1.754;QD=5.37;ReadPosRankSum=1.754;SB=2.03 GT:AD:DP:GQ:PL 1/1:5,3:8:9:75,9,0 chrXIV 6080 . G T 25.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=8.15;MQ0=53;MQRankSum=-1.231;QD=0.43;ReadPosRankSum=0.358;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,3:58:55:55,0,59 chrXIV 91602 . A G 1766 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=36.79;SB=-7.860e+02 GT:AD:DP:GQ:PL 1/1:0,47:48:99:1799,138,0 chrXIV 92170 . A C 1611 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.61;SB=-7.810e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1644,126,0 chrXIV 121619 . C T 1612 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.54;MQ0=0;QD=35.04;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1645,123,0 chrXIV 123935 . G A 2109 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.57;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2142,163,0 chrXIV 126744 . G A 1683 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.59;SB=-7.470e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1716,129,0 chrXIV 128908 . G A 1835 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.98;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1868,144,0 chrXIV 135401 . C T 1619 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.38;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1652,129,0 chrXIV 137285 . A G 1664 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.63;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1697,132,0 chrXIV 139649 . A T 1546 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.95;SB=-5.070e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1579,123,0 chrXIV 210195 . C T 2544 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=35.83;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2577,202,0 chrXIV 300948 . T A 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.127;DP=41;Dels=0.00;FS=49.699;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.21;MQ0=0;MQRankSum=-1.883;QD=2.24;ReadPosRankSum=-1.289;SB=0.079 GT:AD:DP:GQ:PL 0/1:22,19:41:99:122,0,133 chrXIV 377887 . G T 2644 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=34.79;SB=-7.790e+02 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2677,208,0 chrXIV 415071 . C T 288.17 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.244;DP=61;Dels=0.00;FS=3.080;HaplotypeScore=3.0231;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;MQRankSum=-1.050;QD=4.72;ReadPosRankSum=-1.503;SB=-9.532e+02 GT:AD:DP:GQ:PL 1/1:3,58:61:17:321,17,0 chrXIV 415088 . C T 211.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.247;DP=57;Dels=0.00;FS=82.073;HaplotypeScore=7.0647;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=-1.552;QD=3.70;ReadPosRankSum=-5.174;SB=-4.002e+01 GT:AD:DP:GQ:PL 0/1:22,35:57:98:241,0,98 chrXIV 415096 . C T 231.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=3.082;DP=58;Dels=0.00;FS=81.886;HaplotypeScore=8.0312;MLEAC=1;MLEAF=0.500;MQ=57.98;MQ0=0;MQRankSum=-0.155;QD=3.98;ReadPosRankSum=-4.839;SB=-1.202e+01 GT:AD:DP:GQ:PL 0/1:24,34:58:99:261,0,118 chrXIV 416599 . C T 1890 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.59;SB=-1.067e+03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1923,153,0 chrXIV 444667 . G T 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600;DP=44;Dels=0.00;FS=46.795;HaplotypeScore=4.3046;MLEAC=1;MLEAF=0.500;MQ=59.48;MQ0=0;MQRankSum=0.052;QD=0.24;ReadPosRankSum=-3.252;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:32,12:44:40:40,0,529 chrXIV 444670 . A T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.707;DP=46;Dels=0.00;FS=79.671;HaplotypeScore=3.3050;MLEAC=1;MLEAF=0.500;MQ=59.50;MQ0=0;MQRankSum=-1.260;QD=0.25;ReadPosRankSum=-3.987;SB=-6.086e-03 GT:AD:DP:GQ:PL 0/1:31,15:46:41:41,0,545 chrXIV 453868 . G A 1646 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.27;SB=-9.660e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1679,129,0 chrXIV 471767 . A G 1412 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.62;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1445,111,0 chrXIV 500290 . G A 2568 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.67;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,71:72:99:2601,202,0 chrXIV 519198 . G C 1277 filter AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.43;MQ0=5;QD=31.15;SB=-3.110e+02 GT:AD:DP:GQ:PL 1/1:2,39:41:99:1310,99,0 chrXIV 523434 . G A 192.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662;DP=88;Dels=0.00;FS=5.802;HaplotypeScore=2.4413;MLEAC=1;MLEAF=0.500;MQ=24.69;MQ0=13;MQRankSum=0.298;QD=2.18;ReadPosRankSum=0.140;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:69,19:88:99:222,0,675 chrXIV 523441 . G T 209.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.790;DP=89;Dels=0.00;FS=8.226;HaplotypeScore=3.4062;MLEAC=1;MLEAF=0.500;MQ=24.72;MQ0=14;MQRankSum=-0.093;QD=2.35;ReadPosRankSum=0.564;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,18:89:99:239,0,684 chrXIV 523924 . C T 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DP=73;Dels=0.00;FS=7.718;HaplotypeScore=0.9159;MLEAC=1;MLEAF=0.500;MQ=41.85;MQ0=1;MQRankSum=-3.692;QD=2.23;ReadPosRankSum=2.013;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,15:73:99:193,0,1875 chrXIV 523932 . T A 146.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.738;DP=70;Dels=0.00;FS=5.676;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.64;MQ0=1;MQRankSum=-4.305;QD=2.09;ReadPosRankSum=1.977;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,15:70:99:176,0,1910 chrXIV 523934 . A C 154.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.334;DP=68;Dels=0.00;FS=3.614;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.56;MQ0=1;MQRankSum=-4.480;QD=2.26;ReadPosRankSum=1.905;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,15:68:99:184,0,1852 chrXIV 523938 . A G 163.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.250;DP=72;Dels=0.00;FS=3.592;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=44.07;MQ0=1;MQRankSum=-4.242;QD=2.26;ReadPosRankSum=2.204;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,15:72:99:193,0,1973 chrXIV 523952 . A G 204.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.17;MQ0=1;MQRankSum=-4.036;QD=2.87;ReadPosRankSum=1.288;SB=-6.007e+00 GT:AD:DP:GQ:PL 0/1:55,16:71:99:234,0,1832 chrXIV 544744 . G A 1892 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=35.70;SB=-9.750e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1925,147,0 chrXIV 544998 . T C 2163 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.05;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2196,169,0 chrXIV 545184 . A G 2117 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.1534;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=34.70;SB=-7.280e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:2150,169,0 chrXIV 545273 . T C 2030 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.91;SB=-6.560e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2063,160,0 chrXIV 545433 . G C 1775 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=36.22;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1808,141,0 chrXIV 546163 . C T 2116 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.50;MQ0=0;QD=35.86;SB=-8.850e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2149,169,0 chrXIV 546181 . A G 1793 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=36.59;SB=-6.060e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1826,141,0 chrXIV 546186 . C T 1784 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=36.41;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1817,141,0 chrXIV 546338 . A G 2148 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.51;MQ0=0;QD=32.55;SB=-9.880e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2181,172,0 chrXIV 546371 . A G 2036 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=32.32;SB=-9.980e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2069,163,0 chrXIV 546468 . T G 1856 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.39;MQ0=0;QD=34.37;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1889,150,0 chrXIV 546519 . T G 1498 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=1.7046;MLEAC=2;MLEAF=1.00;MQ=57.24;MQ0=0;MQRankSum=1.181;QD=34.05;ReadPosRankSum=0.630;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:1,43:44:89:1531,89,0 chrXIV 546598 . T C 1694 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=35.29;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1727,135,0 chrXIV 546726 . T G 1035 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=40.65;MQ0=0;QD=30.44;SB=-4.580e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:1068,93,0 chrXIV 547464 . T C 1867 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.19;MQ0=0;QD=33.95;SB=-7.060e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1900,153,0 chrXIV 551646 . C T 756 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.08;SB=-3.870e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:789,60,0 chrXIV 552035 . C G 2143 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.72;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2176,166,0 chrXIV 552259 . T C 1261 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.08;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1294,99,0 chrXIV 552403 . G A 2338 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=36.53;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2371,181,0 chrXIV 552429 . G A 2679 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=37.21;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2712,208,0 chrXIV 552569 . A T 1462 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=36.55;SB=-6.280e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:1495,114,0 chrXIV 552682 . G A 2157 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.56;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2190,166,0 chrXIV 552709 . G A 1871 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.69;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1904,144,0 chrXIV 553315 . T C 2414 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=34.49;SB=-8.710e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2447,193,0 chrXIV 553805 . C A 2090 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=37.32;SB=-9.810e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:2123,163,0 chrXIV 553809 . G A 2290 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=36.35;SB=-1.187e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2323,178,0 chrXIV 554217 . T C 1566 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.80;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1599,123,0 chrXIV 711247 . A T 119.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969;DP=43;Dels=0.00;FS=17.685;HaplotypeScore=6.6523;MLEAC=1;MLEAF=0.500;MQ=57.93;MQ0=0;MQRankSum=0.697;QD=2.77;ReadPosRankSum=-0.788;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,14:43:99:149,0,307 chrXIV 744953 . G A 2786 PASS AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.39;MQ0=0;QD=36.66;SB=-1.453e+03 GT:AD:DP:GQ:PL 1/1:0,76:76:99:2819,217,0 chrXIV 779333 . C A 56.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.858;DP=46;Dels=0.00;FS=113.800;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.33;MQ0=0;MQRankSum=-2.972;QD=1.22;ReadPosRankSum=-4.930;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:14,32:46:86:86,0,208 chrXV 28352 . T C 230.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.049;DP=63;Dels=0.00;FS=4.719;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=39.98;MQ0=0;MQRankSum=0.212;QD=3.65;ReadPosRankSum=-0.671;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:50,13:63:99:260,0,1275 chrXV 29144 . A G 57.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115;DP=69;Dels=0.00;FS=22.316;HaplotypeScore=2.8298;MLEAC=1;MLEAF=0.500;MQ=49.09;MQ0=1;MQRankSum=-3.564;QD=0.83;ReadPosRankSum=-0.150;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,12:69:87:87,0,1620 chrXV 31108 . C A 76.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.765;DP=85;Dels=0.00;FS=6.653;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=56.09;MQ0=0;MQRankSum=-4.325;QD=0.89;ReadPosRankSum=-3.897;SB=-1.540e+02 GT:AD:DP:GQ:PL 0/1:64,21:85:99:106,0,1826 chrXV 31111 . A T 23.03 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.809;DP=88;Dels=0.00;FS=9.017;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=56.22;MQ0=0;MQRankSum=-4.267;QD=0.26;ReadPosRankSum=-3.510;SB=-7.801e+01 GT:AD:DP:GQ:PL 0/1:68,20:88:53:53,0,2039 chrXV 31114 . T A 39.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.266;DP=89;Dels=0.00;FS=10.929;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=56.27;MQ0=0;MQRankSum=-4.861;QD=0.44;ReadPosRankSum=-2.855;SB=-1.020e+02 GT:AD:DP:GQ:PL 0/1:69,20:89:69:69,0,1949 chrXV 31220 . A G 286.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288;DP=82;Dels=0.00;FS=5.448;HaplotypeScore=3.8025;MLEAC=1;MLEAF=0.500;MQ=55.64;MQ0=0;MQRankSum=-3.660;QD=3.49;ReadPosRankSum=-4.987;SB=-5.801e+01 GT:AD:DP:GQ:PL 0/1:65,17:82:99:316,0,1703 chrXV 31223 . G T 226.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;DP=78;Dels=0.00;FS=5.721;HaplotypeScore=2.8447;MLEAC=1;MLEAF=0.500;MQ=55.72;MQ0=0;MQRankSum=-4.461;QD=2.90;ReadPosRankSum=-5.377;SB=-5.401e+01 GT:AD:DP:GQ:PL 0/1:62,16:78:99:256,0,1629 chrXV 50002 . C T 1390 SnpCluster AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.64;MQ0=0;QD=33.10;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1423,120,0 chrXV 50010 . A T 1131 SnpCluster AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.98;MQ0=0;QD=26.30;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1164,99,0 chrXV 50012 . C T 1212 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.54;MQ0=0;QD=26.35;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1245,105,0 chrXV 60240 . C T 310 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.02;FS=0.000;HaplotypeScore=5.6817;MLEAC=2;MLEAF=1.00;MQ=58.46;MQ0=0;QD=6.08;SB=-1.150e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:30:343,30,0 chrXV 66022 . A T 1759 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.19;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1792,147,0 chrXV 79297 . C G 1650 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=29.46;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1683,147,0 chrXV 204593 . C T 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.657;DP=54;Dels=0.00;FS=73.451;HaplotypeScore=9.7716;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=0.670;QD=0.24;ReadPosRankSum=-3.374;SB=0.163 GT:AD:DP:GQ:PL 0/1:47,7:54:43:43,0,518 chrXV 216923 . A T 160.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.162;DP=67;Dels=0.00;FS=43.975;HaplotypeScore=38.6471;MLEAC=1;MLEAF=0.500;MQ=48.71;MQ0=0;MQRankSum=-1.106;QD=2.39;ReadPosRankSum=0.261;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,33:67:99:190,0,212 chrXV 216933 . C T 259.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046;DP=55;Dels=0.00;FS=56.463;HaplotypeScore=36.3749;MLEAC=1;MLEAF=0.500;MQ=46.32;MQ0=0;MQRankSum=-3.393;QD=4.71;ReadPosRankSum=1.792;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:24,31:55:99:289,0,270 chrXV 216936 . C T 33.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.955;DP=54;Dels=0.00;FS=45.396;HaplotypeScore=18.6395;MLEAC=1;MLEAF=0.500;MQ=46.03;MQ0=0;MQRankSum=-3.670;QD=0.61;ReadPosRankSum=2.488;SB=1.45 GT:AD:DP:GQ:PL 0/1:27,27:54:63:63,0,358 chrXV 216949 . C T 237.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.373;DP=49;Dels=0.04;FS=76.988;HaplotypeScore=35.3856;MLEAC=1;MLEAF=0.500;MQ=45.60;MQ0=0;MQRankSum=-4.595;QD=4.84;ReadPosRankSum=-1.236;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:19,28:47:99:267,0,330 chrXV 216952 . G T 159.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.924;DP=48;Dels=0.00;FS=65.033;HaplotypeScore=18.3360;MLEAC=1;MLEAF=0.500;MQ=45.26;MQ0=0;MQRankSum=-5.050;QD=3.31;ReadPosRankSum=-3.692;SB=-2.931e+00 GT:AD:DP:GQ:PL 0/1:20,28:48:99:189,0,335 chrXV 216964 . C T 80.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.041;DP=48;Dels=0.00;FS=45.832;HaplotypeScore=29.7824;MLEAC=1;MLEAF=0.500;MQ=47.12;MQ0=0;MQRankSum=-2.935;QD=1.67;ReadPosRankSum=-2.786;SB=-6.433e-03 GT:AD:DP:GQ:PL 0/1:26,22:48:99:110,0,418 chrXV 245067 . C T 2140 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.44;SB=-1.099e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2173,181,0 chrXV 287386 . A G 1227 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.46;SB=-2.380e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1260,111,0 chrXV 288023 . A T 1531 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.02;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1564,129,0 chrXV 288113 . G A 1920 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.52;MQ0=0;QD=30.97;SB=-9.250e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1953,159,0 chrXV 288164 . C T 1251 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.92;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1284,105,0 chrXV 288644 . G A 1284 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.86;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1317,108,0 chrXV 288781 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.13;SB=-8.060e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1660,138,0 chrXV 288813 . A T 1499 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=31.23;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1532,123,0 chrXV 288918 . A G 1714 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.05;SB=-8.540e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1747,153,0 chrXV 289218 . C T 1598 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.33;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1631,135,0 chrXV 289275 . T C 1734 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.11;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1767,153,0 chrXV 289536 . G A 1316 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=29.91;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1349,111,0 chrXV 289707 . G T 1971 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.41;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2004,169,0 chrXV 289728 . T C 1922 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=28.69;SB=-1.072e+03 GT:AD:DP:GQ:PL 1/1:1,66:67:99:1955,168,0 chrXV 289797 . C A 2014 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=30.98;SB=-1.132e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2047,169,0 chrXV 289980 . C T 1432 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=33.30;SB=-5.600e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1465,123,0 chrXV 290026 . C T 1814 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=33.59;SB=-8.680e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1847,153,0 chrXV 290144 . C T 1977 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=34.68;SB=-9.890e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2010,169,0 chrXV 290259 . A G 1595 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=29.00;SB=-6.070e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1628,141,0 chrXV 290268 . G A 1672 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.28;MQ0=0;QD=30.40;SB=-6.520e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1705,141,0 chrXV 290681 . T C 1599 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=30.17;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1632,138,0 chrXV 290723 . T A 1781 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=32.38;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1814,150,0 chrXV 290790 . C T 1828 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.79;MQ0=0;QD=30.98;SB=-9.850e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1861,156,0 chrXV 290808 . A G 2028 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=30.73;SB=-1.017e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2061,181,0 chrXV 290809 . C T 2076 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.22;MQ0=0;QD=31.45;SB=-1.054e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2109,181,0 chrXV 290822 . T G 45.97 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=62;Dels=0.00;FS=3.704;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.41;MQ0=0;MQRankSum=0.653;QD=0.74;ReadPosRankSum=-0.199;SB=-8.590e+02 GT:AD:DP:GQ:PL 1/1:1,61:62:9:78,9,0 chrXV 290826 . C T 45.97 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.26;MQ0=0;QD=0.73;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:9:78,9,0 chrXV 290902 . A T 1662 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.95;MQ0=0;QD=29.68;SB=-8.700e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1695,144,0 chrXV 290908 . C T 1717 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.50;MQ0=0;QD=30.12;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1750,144,0 chrXV 290922 . C G 38.97 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.45;MQ0=0;QD=0.65;SB=-9.460e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:9:71,9,0 chrXV 290923 . T C 38.97 filter AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.51;MQ0=0;QD=0.64;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:9:71,9,0 chrXV 291010 . A G 1668 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=30.89;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1701,147,0 chrXV 291072 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=31.19;SB=-8.890e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1717,147,0 chrXV 291394 . A G 1672 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.12;MQ0=0;QD=34.12;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1705,147,0 chrXV 291397 . G A 1761 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=35.22;SB=-8.220e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1794,150,0 chrXV 291472 . T G 1646 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.75;MQ0=0;QD=31.65;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1679,147,0 chrXV 291517 . G A 1897 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=34.49;SB=-8.040e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1930,159,0 chrXV 291532 . A G 1878 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.61;MQ0=0;QD=31.83;SB=-9.020e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1911,165,0 chrXV 291562 . A G 1709 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.44;MQ0=0;QD=31.07;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1742,153,0 chrXV 291583 . G A 1831 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=32.70;SB=-7.940e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1864,156,0 chrXV 291594 . G A 1750 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.00;MQ0=0;QD=31.82;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1783,147,0 chrXV 291607 . A G 1840 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.672;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.6988;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.213;QD=32.28;ReadPosRankSum=0.517;SB=-8.010e+02 GT:AD:DP:GQ:PL 1/1:1,56:57:99:1873,159,0 chrXV 291799 . C T 1727 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.35;MQ0=0;QD=31.40;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1760,144,0 chrXV 291910 . A G 1609 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=53;Dels=0.00;FS=4.938;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.79;MQ0=0;MQRankSum=-0.490;QD=30.36;ReadPosRankSum=0.425;SB=-4.920e+02 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1642,113,0 chrXV 292264 . G A 1651 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=31.15;SB=-8.990e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1684,144,0 chrXV 292302 . A G 1442 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.178;QD=28.84;ReadPosRankSum=1.247;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:1,49:50:96:1475,96,0 chrXV 292356 . T C 2111 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.974;DP=64;Dels=0.00;FS=4.638;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;MQRankSum=1.299;QD=32.98;ReadPosRankSum=-1.353;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:1,63:64:99:2144,153,0 chrXV 292448 . A C 1537 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.14;SB=-4.230e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1570,135,0 chrXV 292493 . C T 1563 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.98;SB=-5.400e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1596,132,0 chrXV 292642 . C G 1271 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.650;DP=42;Dels=0.00;FS=3.445;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;MQRankSum=1.568;QD=30.26;ReadPosRankSum=-1.485;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:1,41:42:99:1304,114,0 chrXV 292744 . A T 1079 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=31.74;SB=-4.590e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:93:1112,93,0 chrXV 292883 . A G 2009 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=3.3772;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.93;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2042,175,0 chrXV 293132 . A G 1584 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.02;FS=0.000;HaplotypeScore=10.0859;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=25.97;SB=-7.600e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1617,138,0 chrXV 293200 . T C 1201 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.61;SB=-4.940e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1234,105,0 chrXV 294178 . C T 1823 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=31.98;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1856,156,0 chrXV 294330 . G A 2676 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=33.04;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2709,229,0 chrXV 294382 . G A 2523 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=31.15;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2556,223,0 chrXV 294529 . T C 1792 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=32.58;SB=-8.050e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1825,156,0 chrXV 294547 . C T 2117 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=57.19;MQ0=0;QD=34.15;SB=-1.086e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2150,184,0 chrXV 294553 . C T 2044 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=57.09;MQ0=0;QD=34.07;SB=-1.039e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2077,175,0 chrXV 294636 . A G 2078 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=31.97;SB=-1.083e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2111,178,0 chrXV 294723 . T C 1941 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.66;SB=-6.750e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1974,168,0 chrXV 294840 . A G 968 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.33;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,32:33:90:1001,90,0 chrXV 294882 . A G 1066 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.81;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:1099,93,0 chrXV 295275 . A G 2047 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=31.98;SB=-1.103e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2080,178,0 chrXV 295276 . A G 1926 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=30.09;SB=-1.026e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1959,168,0 chrXV 295611 . C T 1343 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.84;SB=-7.500e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1376,114,0 chrXV 299731 . G T 1906 SnpCluster AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.06;MQ0=0;QD=28.03;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:1939,174,0 chrXV 299739 . C T 1431 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.45;MQ0=0;QD=24.25;SB=-8.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1464,132,0 chrXV 299741 . G A 1429 SnpCluster AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.69;MQ0=0;QD=24.64;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1462,132,0 chrXV 299751 . G A 1525 SnpCluster AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.88;MQ0=0;QD=25.85;SB=-9.000e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1558,141,0 chrXV 299757 . A G 1150 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=25.00;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1183,108,0 chrXV 299759 . A T 1131 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=24.59;SB=-5.660e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1164,108,0 chrXV 299762 . G C 887 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=19.28;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:920,108,0 chrXV 299764 . A T 838 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=18.22;SB=-5.680e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:871,108,0 chrXV 299765 . G T 844 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=18.35;SB=-5.650e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:877,108,0 chrXV 299766 . A T 850 SnpCluster AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.58;MQ0=0;QD=18.48;SB=-5.670e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:883,108,0 chrXV 299771 . C G 1145 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=20.82;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1178,108,0 chrXV 299774 . G A 1151 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=20.93;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1184,108,0 chrXV 299775 . C A 1149 SnpCluster AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=20.89;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1182,108,0 chrXV 299778 . A G 1153 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.69;MQ0=0;QD=18.90;SB=-9.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1186,108,0 chrXV 299793 . G C 1574 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.75;MQ0=0;QD=20.44;SB=-1.061e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:1607,147,0 chrXV 299796 . C A 1593 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.76;MQ0=0;QD=20.16;SB=-1.147e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:1626,147,0 chrXV 299808 . C A 1786 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=34.28;MQ0=0;QD=22.05;SB=-1.249e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:1819,165,0 chrXV 299839 . A G 1473 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.92;MQ0=0;QD=22.32;SB=-8.610e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1506,132,0 chrXV 299855 . G A 1490 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.74;MQ0=0;QD=24.43;SB=-8.310e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1523,132,0 chrXV 299876 . C T 1859 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.48;MQ0=0;QD=28.17;SB=-1.111e+03 GT:AD:DP:GQ:PL 1/1:0,66:66:99:1892,168,0 chrXV 299879 . G A 1780 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.21;MQ0=0;QD=30.17;SB=-8.800e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1813,159,0 chrXV 299931 . G A 1404 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.78;MQ0=0;QD=29.87;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1437,120,0 chrXV 299935 . G A 1376 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.54;MQ0=0;QD=30.58;SB=-6.570e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1409,123,0 chrXV 299976 . A G 1663 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.669;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.56;MQ0=0;MQRankSum=0.976;QD=30.24;ReadPosRankSum=0.031;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:1,54:55:99:1696,147,0 chrXV 300004 . G A 1635 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.12;MQ0=0;QD=33.37;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1668,138,0 chrXV 300055 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=56.43;MQ0=0;QD=30.37;SB=-9.480e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2250,196,0 chrXV 300097 . A G 1817 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.47;MQ0=0;QD=31.33;SB=-7.880e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1850,159,0 chrXV 300301 . G T 1661 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.41;MQ0=0;QD=32.57;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1694,141,0 chrXV 300580 . G A 1309 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.15;MQ0=0;QD=32.72;SB=-5.520e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1342,114,0 chrXV 300670 . A G 1148 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.28;MQ0=0;QD=28.70;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1181,99,0 chrXV 300831 . G A 1093 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.32;MQ0=0;QD=29.54;SB=-1.750e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:93:1126,93,0 chrXV 300865 . T C 1097 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.19;MQ0=0;QD=24.93;SB=-1.090e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:96:1130,96,0 chrXV 300887 . C T 735 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=42.50;MQ0=0;QD=22.97;SB=-3.701e+01 GT:AD:DP:GQ:PL 1/1:0,32:32:66:768,66,0 chrXV 300895 . T A 624 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=38.48;MQ0=0;QD=20.13;SB=-3.701e+01 GT:AD:DP:GQ:PL 1/1:0,31:31:57:657,57,0 chrXV 301024 . A G 1020 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.01;MQ0=0;QD=29.14;SB=-1.020e+02 GT:AD:DP:GQ:PL 1/1:0,34:35:90:1053,90,0 chrXV 301075 . T G 705 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.06;MQ0=0;QD=20.74;SB=-1.360e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:90:738,90,0 chrXV 301083 . T C 1097 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.04;MQ0=0;QD=31.34;SB=-2.340e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1130,96,0 chrXV 301153 . G A 874 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.24;MQ0=0;QD=28.19;SB=-4.510e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:78:907,78,0 chrXV 301193 . C G 1249 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.90;MQ0=0;QD=31.22;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1282,111,0 chrXV 301493 . T G 808 PASS AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.91;MQ0=0;QD=28.86;SB=-3.250e+02 GT:AD:DP:GQ:PL 1/1:0,28:28:72:841,72,0 chrXV 301497 . A G 939 PASS AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.53;MQ0=0;QD=30.29;SB=-2.770e+02 GT:AD:DP:GQ:PL 1/1:0,31:31:84:972,84,0 chrXV 301568 . C T 1699 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.04;MQ0=0;QD=32.67;SB=-1.430e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1732,147,0 chrXV 301621 . C G 1994 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.87;MQ0=0;QD=32.16;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2027,180,0 chrXV 301631 . T C 1871 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.35;MQ0=0;QD=32.82;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1904,165,0 chrXV 301638 . T C 1737 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.16;MQ0=0;QD=31.02;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1770,156,0 chrXV 301658 . G A 1841 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.73;MQ0=0;QD=28.77;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1874,159,0 chrXV 301737 . T G 1569 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.17;MQ0=0;QD=31.38;SB=-7.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1602,138,0 chrXV 302184 . T C 1957 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=33.74;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1990,172,0 chrXV 302514 . T C 2021 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.8110;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=31.09;SB=-7.950e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2054,178,0 chrXV 302730 . T C 1213 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=33.69;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1246,105,0 chrXV 302844 . T C 1393 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=32.40;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1426,120,0 chrXV 302883 . C T 1553 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=33.04;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1586,132,0 chrXV 303066 . A T 932 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=29.12;SB=-5.230e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:87:965,87,0 chrXV 303067 . C T 977 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.28;MQ0=0;QD=30.53;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:90:1010,90,0 chrXV 303118 . C T 1014 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.97;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:87:1047,87,0 chrXV 303176 . T G 1090 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.644;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;MQRankSum=1.644;QD=27.25;ReadPosRankSum=1.377;SB=-5.290e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:99:1123,99,0 chrXV 303222 . A G 1307 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=1.8455;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=31.12;SB=-5.830e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1340,114,0 chrXV 303785 . A G 1773 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.76;SB=-7.240e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1806,153,0 chrXV 303924 . C T 1444 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.66;MQ0=0;QD=28.88;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1477,123,0 chrXV 303991 . A T 1395 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=29.06;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1428,117,0 chrXV 304268 . T C 1755 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=29.25;SB=-8.360e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1788,153,0 chrXV 304269 . G A 1793 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=32.02;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1826,153,0 chrXV 304525 . C G 790 PASS AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=27.24;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:72:823,72,0 chrXV 304796 . T C 2492 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.95;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2525,214,0 chrXV 304893 . C T 2162 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=34.87;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2195,181,0 chrXV 304912 . T A 2096 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=33.81;SB=-4.530e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2129,178,0 chrXV 305296 . G A 1790 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.8039;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.83;SB=-1.005e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1823,153,0 chrXV 305375 . T C 2271 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.90;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2304,196,0 chrXV 305531 . G A 1575 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=32.81;SB=-4.300e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1608,138,0 chrXV 305540 . G A 1200 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=30.00;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1233,105,0 chrXV 305753 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.32;MQ0=0;QD=31.93;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2204,193,0 chrXV 306086 . C T 1523 SnpCluster AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=1.7356;MLEAC=2;MLEAF=1.00;MQ=49.74;MQ0=0;QD=31.08;SB=-3.140e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1556,135,0 chrXV 306087 . C T 1552 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=33.02;SB=-3.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1585,135,0 chrXV 306089 . G A 1539 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.25;MQ0=0;QD=32.74;SB=-3.170e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1572,135,0 chrXV 306275 . C T 1635 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=32.06;SB=-7.670e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1668,138,0 chrXV 306427 . C T 2157 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.35;MQ0=0;QD=34.79;SB=-1.050e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2190,187,0 chrXV 307049 . A G 1887 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=59.20;MQ0=0;QD=32.53;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1920,165,0 chrXV 307849 . A T 1620 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=33.06;SB=-3.270e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1653,138,0 chrXV 307994 . A G 935 PASS AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=29.22;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,32:32:81:968,81,0 chrXV 308124 . A G 2198 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=31.86;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2231,190,0 chrXV 308212 . G A 1667 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=34.02;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1700,138,0 chrXV 308387 . C T 1815 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.81;SB=-8.650e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1848,153,0 chrXV 308420 . A C 2181 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=2.1992;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.07;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2214,190,0 chrXV 308513 . C T 2455 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.88;SB=-6.950e+02 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2488,208,0 chrXV 308645 . G A 1711 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=35.65;SB=-7.070e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1744,144,0 chrXV 308792 . G A 1501 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.63;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1534,126,0 chrXV 308876 . T C 1688 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.85;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1721,144,0 chrXV 308969 . G A 1937 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=32.83;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1970,165,0 chrXV 309144 . A G 3028 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=2.4892;MLEAC=2;MLEAF=1.00;MQ=60.57;MQ0=0;QD=32.91;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:1,91:92:99:3061,262,0 chrXV 309237 . A G 1284 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.32;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1317,114,0 chrXV 309247 . A C 1095 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.18;SB=-2.530e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:96:1128,96,0 chrXV 309334 . C T 1129 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.26;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:96:1162,96,0 chrXV 309615 . T C 1522 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=33.09;SB=-6.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1555,132,0 chrXV 309869 . T C 1824 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=32.00;SB=-4.430e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1857,162,0 chrXV 310070 . A G 1911 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.85;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1944,165,0 chrXV 310257 . A G 1821 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.37;SB=-8.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1854,162,0 chrXV 310258 . A G 1828 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=29.02;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1861,162,0 chrXV 310926 . C T 1994 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=33.80;SB=-1.018e+03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2027,171,0 chrXV 311157 . A G 1720 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.27;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1753,153,0 chrXV 311312 . T C 1439 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.98;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1472,126,0 chrXV 311429 . A C 2641 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=31.44;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2674,235,0 chrXV 311450 . G A 2296 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=33.28;SB=-7.210e+02 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2329,196,0 chrXV 311489 . G A 2699 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=32.91;SB=-1.247e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2732,235,0 chrXV 311718 . C T 1320 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=35.68;SB=-1.840e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1353,111,0 chrXV 312220 . A G 1638 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.24;MQ0=0;QD=30.91;SB=-8.000e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1671,141,0 chrXV 312454 . A G 2046 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.48;SB=-9.130e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2079,180,0 chrXV 312534 . T C 2395 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.81;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2428,208,0 chrXV 312575 . C A 2587 PASS AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.55;SB=-1.275e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2620,220,0 chrXV 312919 . A G 2090 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.48;MQ0=0;QD=31.19;SB=-3.860e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2123,181,0 chrXV 313126 . T C 2070 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.36;SB=-8.870e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2103,178,0 chrXV 313429 . T C 1064 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.24;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:1097,93,0 chrXV 313924 . T G 1930 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=30.63;SB=-5.170e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1963,168,0 chrXV 313948 . A G 1722 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=31.31;SB=-4.320e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1755,150,0 chrXV 314041 . A G 1358 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.33;SB=-5.250e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1391,120,0 chrXV 314073 . G T 1512 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.60;SB=-7.170e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1545,129,0 chrXV 314395 . G A 2821 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=32.43;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2854,241,0 chrXV 314514 . G A 1628 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=33.22;SB=-6.680e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1661,135,0 chrXV 315048 . G T 1254 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9993;MLEAC=2;MLEAF=1.00;MQ=55.85;MQ0=0;QD=33.00;SB=-3.290e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1287,108,0 chrXV 315191 . G C 2005 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.87;SB=-9.070e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2038,175,0 chrXV 315691 . A G 1893 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=3.2272;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=27.04;SB=-2.680e+02 GT:AD:DP:GQ:PL 1/1:0,69:70:99:1926,168,0 chrXV 315748 . T C 2698 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.41;MQ0=0;QD=29.65;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2731,238,0 chrXV 315837 . A G 1966 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.99;MQ0=0;QD=31.21;SB=-4.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1999,174,0 chrXV 315972 . G A 1587 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.55;MQ0=0;QD=33.06;SB=-7.040e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1620,135,0 chrXV 316038 . A G 1763 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=27.98;SB=-1.088e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1796,153,0 chrXV 316312 . C A 1887 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=56.23;MQ0=0;QD=32.53;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1920,162,0 chrXV 316327 . A C 1512 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.26;MQ0=0;QD=29.08;SB=-6.200e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1545,135,0 chrXV 316342 . T C 1840 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.28;MQ0=0;QD=32.28;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1873,165,0 chrXV 316353 . T C 1692 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.28;MQ0=0;QD=30.76;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1725,150,0 chrXV 316361 . T A 1630 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.47;MQ0=0;QD=30.19;SB=-5.810e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1663,144,0 chrXV 316412 . C T 1033 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.72;MQ0=0;QD=28.69;SB=-4.360e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1066,96,0 chrXV 316425 . C T 76.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.781;DP=46;Dels=0.00;FS=1.284;HaplotypeScore=56.0575;MLEAC=1;MLEAF=0.500;MQ=35.51;MQ0=0;MQRankSum=-0.098;QD=1.65;ReadPosRankSum=-2.830;SB=-8.901e+01 GT:AD:DP:GQ:PL 0/1:33,13:46:99:106,0,836 chrXV 316591 . A T 2564 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=32.87;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2597,220,0 chrXV 316611 . A G 2694 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=32.07;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2727,235,0 chrXV 316882 . G A 1982 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.78;MQ0=0;QD=34.77;SB=-8.160e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2015,169,0 chrXV 317034 . T A 2074 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.23;MQ0=0;QD=31.42;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:2107,189,0 chrXV 317483 . T C 820 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.30;MQ0=0;QD=24.85;SB=-3.440e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:75:853,75,0 chrXV 317789 . A T 1962 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=33.25;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1995,165,0 chrXV 317798 . C T 2239 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=34.45;SB=-9.050e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2272,190,0 chrXV 317858 . T C 1892 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=30.52;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1925,165,0 chrXV 318077 . T A 2027 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=31.67;SB=-6.220e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2060,172,0 chrXV 318084 . C T 2062 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=31.24;SB=-6.540e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2095,177,0 chrXV 318136 . C T 1281 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=32.02;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1314,111,0 chrXV 318668 . C G 1271 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.33;MQ0=0;QD=30.26;SB=-5.330e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1304,111,0 chrXV 318818 . T C 2156 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=2.3346;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=30.37;SB=-9.490e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2189,190,0 chrXV 319505 . C T 2039 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.4715;MLEAC=2;MLEAF=1.00;MQ=58.36;MQ0=0;QD=32.37;SB=-8.920e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2072,172,0 chrXV 319628 . G A 2226 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.64;MQ0=0;QD=34.78;SB=-1.156e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2259,187,0 chrXV 320015 . C G 1985 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.02;SB=-1.057e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2018,177,0 chrXV 320174 . T G 2062 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=31.24;SB=-9.710e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2095,181,0 chrXV 320437 . G A 826 PASS AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.04;SB=-2.470e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:72:859,72,0 chrXV 320590 . A G 2272 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.736;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;MQRankSum=2.385;QD=29.89;ReadPosRankSum=0.990;SB=-1.167e+03 GT:AD:DP:GQ:PL 1/1:2,74:76:99:2305,167,0 chrXV 320726 . G A 1846 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.56;SB=-8.820e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1879,156,0 chrXV 320825 . C T 1701 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=34.02;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1734,147,0 chrXV 321352 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.50;SB=-8.170e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2049,174,0 chrXV 321368 . A C 1709 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=28.97;SB=-6.920e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1742,150,0 chrXV 321655 . C G 2057 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.6498;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=31.65;SB=-8.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2090,181,0 chrXV 321766 . C T 2348 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=32.16;SB=-9.530e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2381,199,0 chrXV 321972 . T C 1144 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=27.90;SB=-6.660e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1177,102,0 chrXV 322108 . C T 2212 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.52;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2245,187,0 chrXV 322138 . G T 2544 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=34.85;SB=-1.025e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2577,214,0 chrXV 322263 . G A 1815 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=32.41;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1848,153,0 chrXV 322341 . A G 1485 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=30.31;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1518,129,0 chrXV 322691 . G A 1358 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=28.89;SB=-5.050e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1391,117,0 chrXV 322692 . G A 1352 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=27.59;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1385,117,0 chrXV 322741 . C T 1744 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.82;MQ0=0;QD=29.56;SB=-6.170e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1777,147,0 chrXV 322819 . C T 1596 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=29.02;SB=-4.990e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1629,138,0 chrXV 323130 . A G 1769 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.15;MQ0=0;QD=28.53;SB=-6.740e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1802,153,0 chrXV 323284 . C T 1165 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.74;MQ0=0;QD=31.49;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1198,99,0 chrXV 323552 . G A 1915 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.00;MQ0=0;QD=33.60;SB=-5.020e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1948,162,0 chrXV 323813 . C G 1416 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.18;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1449,123,0 chrXV 323974 . A G 1770 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=29.50;SB=-9.350e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1803,153,0 chrXV 324302 . T G 1775 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.55;MQ0=0;QD=30.60;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1808,156,0 chrXV 324679 . T C 1900 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.17;MQ0=0;QD=33.93;SB=-7.230e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1933,165,0 chrXV 325269 . A C 2238 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=31.52;SB=-1.114e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2271,196,0 chrXV 325359 . G A 1932 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.00;MQ0=0;QD=28.84;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1965,171,0 chrXV 325987 . C T 1632 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=32.00;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1665,138,0 chrXV 326267 . T C 1681 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.20;MQ0=0;QD=32.96;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1714,147,0 chrXV 326369 . A G 1557 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=53.32;MQ0=0;QD=30.53;SB=-4.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1590,135,0 chrXV 326393 . A G 1079 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=29.97;SB=-3.470e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1112,96,0 chrXV 326413 . A G 1032 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.57;MQ0=0;QD=29.49;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:93:1065,93,0 chrXV 326418 . T C 919 PASS AC=2;AF=1.00;AN=2;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.67;MQ0=0;QD=27.03;SB=-3.090e+02 GT:AD:DP:GQ:PL 1/1:0,34:34:84:952,84,0 chrXV 326488 . C A 728 PASS AC=2;AF=1.00;AN=2;DP=27;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.69;MQ0=0;QD=26.96;SB=-1.040e+02 GT:AD:DP:GQ:PL 1/1:0,27:27:66:761,66,0 chrXV 326558 . G A 569 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.26;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:54:602,54,0 chrXV 326567 . A C 564 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=16.11;SB=-4.640e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:54:597,54,0 chrXV 326583 . T A 535 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=15.29;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:51:568,51,0 chrXV 326614 . T C 1003 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.39;SB=-4.680e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:93:1036,93,0 chrXV 326653 . T A 1186 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=33.64;MQ0=0;QD=31.21;SB=-6.350e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1219,108,0 chrXV 326670 . C T 1027 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=31.9484;MLEAC=2;MLEAF=1.00;MQ=40.84;MQ0=0;QD=27.03;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1060,105,0 chrXV 326879 . G A 2963 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.62;MQ0=0;QD=32.56;SB=-7.930e+02 GT:AD:DP:GQ:PL 1/1:0,91:91:99:2996,259,0 chrXV 326915 . A G 2166 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.94;MQ0=0;QD=31.85;SB=-5.140e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2199,190,0 chrXV 326918 . C G 1992 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=33.20;SB=-5.160e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2025,172,0 chrXV 327002 . C T 1121 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=31.14;SB=-6.030e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1154,99,0 chrXV 327003 . C T 1123 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.50;MQ0=0;QD=31.19;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:99:1156,99,0 chrXV 327020 . T C 1231 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=52.65;MQ0=0;QD=30.77;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1264,111,0 chrXV 327197 . T C 1494 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=31.79;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1527,132,0 chrXV 327917 . T C 1763 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.23;MQ0=0;MQRankSum=-0.231;QD=29.38;ReadPosRankSum=0.115;SB=-9.410e+02 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1796,153,0 chrXV 328029 . A C 1408 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;QD=32.74;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,42:43:99:1441,126,0 chrXV 328049 . C T 1749 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.60;MQ0=0;QD=34.98;SB=-3.920e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1782,150,0 chrXV 328185 . A G 2241 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=32.96;SB=-9.740e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2274,193,0 chrXV 328373 . C T 1417 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.94;MQ0=0;QD=34.56;SB=-5.260e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1450,123,0 chrXV 328457 . C T 1866 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=57.91;MQ0=0;QD=33.32;SB=-8.260e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1899,156,0 chrXV 328464 . G A 1836 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=58.05;MQ0=0;QD=30.60;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,59:60:99:1869,159,0 chrXV 328714 . T C 1789 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=29.82;SB=-8.280e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1822,159,0 chrXV 328719 . C G 1890 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=48.72;MQ0=0;QD=30.00;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1923,168,0 chrXV 328735 . C T 1682 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.96;MQ0=0;QD=30.58;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1715,147,0 chrXV 328747 . C T 1675 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=54.82;MQ0=0;QD=32.84;SB=-6.940e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1708,147,0 chrXV 328791 . C A 1855 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.66;MQ0=0;QD=33.73;SB=-5.510e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1888,159,0 chrXV 329046 . A T 2419 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=32.25;SB=-1.188e+03 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2452,205,0 chrXV 329561 . C G 1674 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.9989;MLEAC=2;MLEAF=1.00;MQ=58.52;MQ0=0;QD=29.37;SB=-8.460e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1707,147,0 chrXV 330217 . T C 1420 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=30.21;SB=-6.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1453,123,0 chrXV 330566 . A G 1933 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=31.69;SB=-3.430e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1966,168,0 chrXV 331119 . A T 1651 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.02;SB=-7.870e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1684,141,0 chrXV 331262 . T C 1602 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.23;SB=-8.100e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1635,141,0 chrXV 331265 . C T 1592 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.22;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1625,138,0 chrXV 331409 . G A 1939 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.02;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1972,165,0 chrXV 331520 . T A 1355 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.51;SB=-6.120e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1388,114,0 chrXV 331655 . T A 1724 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.35;SB=-5.280e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1757,150,0 chrXV 331767 . A G 1697 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.186;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=2.9641;MLEAC=2;MLEAF=1.00;MQ=58.92;MQ0=0;MQRankSum=-0.742;QD=30.30;ReadPosRankSum=-1.114;SB=-4.700e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:1730,114,0 chrXV 331895 . T C 649 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.589;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.589;QD=27.04;ReadPosRankSum=0.867;SB=-3.880e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:57:682,57,0 chrXV 332034 . G T 1935 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.25;SB=-5.870e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1968,165,0 chrXV 332096 . A T 1450 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.52;SB=-5.360e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1483,126,0 chrXV 332111 . G A 1536 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.35;SB=-4.620e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1569,135,0 chrXV 332285 . A G 1436 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=28.72;SB=-5.370e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1469,123,0 chrXV 332378 . G A 1540 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.48;SB=-4.070e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1573,129,0 chrXV 332899 . T C 1711 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=33.55;SB=-6.600e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1744,147,0 chrXV 332916 . C T 1363 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.13;MQ0=0;QD=33.24;SB=-7.080e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1396,117,0 chrXV 332923 . A G 1222 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=2.7413;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=30.55;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1255,108,0 chrXV 333273 . C T 1889 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=30.97;SB=-9.840e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1922,162,0 chrXV 333311 . A G 2364 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.83;SB=-9.550e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2397,205,0 chrXV 333364 . C G 2310 PASS AC=2;AF=1.00;AN=2;DP=74;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.69;MQ0=0;QD=31.22;SB=-1.189e+03 GT:AD:DP:GQ:PL 1/1:0,74:74:99:2343,199,0 chrXV 333391 . G C 1987 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=2.4875;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=30.11;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:0,66:66:99:2020,175,0 chrXV 333403 . T G 1937 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=31.75;SB=-5.440e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1970,168,0 chrXV 333897 . C T 1445 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,46:47:99:1478,126,0 chrXV 334299 . G A 1424 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.64;SB=-7.900e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1457,123,0 chrXV 334726 . T C 1933 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.22;MQ0=0;QD=32.76;SB=-6.480e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1966,168,0 chrXV 334869 . C G 1083 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.96;MQ0=0;QD=30.08;SB=-6.080e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:96:1116,96,0 chrXV 335001 . A G 2161 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=30.01;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2194,184,0 chrXV 335413 . A G 2058 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.7820;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.67;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2091,181,0 chrXV 336579 . G C 1534 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.96;SB=-6.830e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1567,135,0 chrXV 336629 . C T 1436 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.46;MQ0=0;QD=33.40;SB=-4.390e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1469,120,0 chrXV 336658 . A G 1384 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.45;SB=-3.370e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1417,123,0 chrXV 336821 . T C 2171 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.8888;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=33.40;SB=-6.400e+02 GT:AD:DP:GQ:PL 1/1:0,64:65:99:2204,187,0 chrXV 337296 . A G 1536 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.660;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;MQRankSum=1.660;QD=32.00;ReadPosRankSum=-0.144;SB=-7.780e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1569,105,0 chrXV 337464 . T C 1414 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=29.46;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1447,126,0 chrXV 337465 . G A 1458 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=31.70;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1491,126,0 chrXV 337546 . A G 2113 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=30.19;SB=-6.470e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2146,187,0 chrXV 337635 . C T 2577 PASS AC=2;AF=1.00;AN=2;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.71;MQ0=0;QD=32.62;SB=-1.259e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2610,217,0 chrXV 337723 . C T 1383 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.02;FS=0.000;HaplotypeScore=8.8311;MLEAC=2;MLEAF=1.00;MQ=59.48;MQ0=0;QD=31.43;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1416,117,0 chrXV 337772 . C T 1538 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.43;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1571,129,0 chrXV 338127 . T C 629 PASS AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=24.19;SB=-3.620e+02 GT:AD:DP:GQ:PL 1/1:0,26:26:60:662,60,0 chrXV 338175 . C T 964 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.681;DP=56;Dels=0.00;FS=4.058;HaplotypeScore=1.8311;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-1.052;QD=17.21;ReadPosRankSum=0.495;SB=-6.730e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:58:997,58,0 chrXV 338259 . G A 1627 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.13;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1660,138,0 chrXV 338406 . A G 1079 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-0.866;DP=40;Dels=0.00;FS=3.233;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.260;QD=26.97;ReadPosRankSum=-1.299;SB=-5.940e+02 GT:AD:DP:GQ:PL 1/1:1,39:40:63:1112,63,0 chrXV 338412 . G A 1114 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.077;DP=37;Dels=0.00;FS=3.641;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.328;QD=30.11;ReadPosRankSum=-1.733;SB=-5.110e+02 GT:AD:DP:GQ:PL 1/1:1,36:37:65:1147,65,0 chrXV 339097 . A G 1660 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.74;SB=-6.460e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1693,147,0 chrXV 339178 . T C 1837 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.80;SB=-9.610e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1870,162,0 chrXV 339568 . A G 2055 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=28.15;SB=-9.950e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2088,175,0 chrXV 339637 . G A 1955 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.676;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=3.5256;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;MQRankSum=1.621;QD=31.53;ReadPosRankSum=0.447;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:1,61:62:99:1988,168,0 chrXV 340281 . T C 1548 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.08;MQ0=0;QD=31.59;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1581,138,0 chrXV 340387 . T C 1514 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.13;MQ0=0;QD=30.28;SB=-5.120e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1547,132,0 chrXV 340401 . C A 1778 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=32.33;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1811,153,0 chrXV 340587 . T G 1819 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.04;FS=0.000;HaplotypeScore=2.6166;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;QD=31.91;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1852,159,0 chrXV 340588 . T G 1862 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.843;DP=57;Dels=0.00;FS=2.978;HaplotypeScore=1.6208;MLEAC=2;MLEAF=1.00;MQ=56.68;MQ0=0;MQRankSum=-0.672;QD=32.67;ReadPosRankSum=2.364;SB=-8.370e+02 GT:AD:DP:GQ:PL 1/1:2,55:57:99:1895,162,0 chrXV 340625 . T C 1985 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=3.3560;MLEAC=2;MLEAF=1.00;MQ=56.73;MQ0=0;QD=30.54;SB=-1.033e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2018,174,0 chrXV 340736 . A G 2075 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.02;MQ0=0;QD=30.97;SB=-1.009e+03 GT:AD:DP:GQ:PL 1/1:0,66:67:99:2108,187,0 chrXV 340745 . G T 159.06 SnpCluster AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=43.37;MQ0=0;QD=2.61;SB=-7.771e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:21:192,21,0 chrXV 340746 . C G 116.13 SnpCluster AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.9764;MLEAC=2;MLEAF=1.00;MQ=43.04;MQ0=0;QD=1.94;SB=-7.801e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:18:149,18,0 chrXV 340750 . C T 1870 SnpCluster AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=2.2424;MLEAC=2;MLEAF=1.00;MQ=42.48;MQ0=0;QD=29.68;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1903,168,0 chrXV 340815 . T C 79.51 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.63;MQ0=0;QD=1.89;SB=-3.265e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:12:112,12,0 chrXV 340822 . C G 939 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.59;MQ0=0;QD=21.84;SB=-3.360e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:87:972,87,0 chrXV 340837 . C T 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=0.48;SB=-2.088e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:6:49,6,0 chrXV 340839 . T C 17.84 LowQual;SnpCluster;filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=0.48;SB=-2.068e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:6:49,6,0 chrXV 340842 . A C 875 SnpCluster AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.84;MQ0=0;QD=23.65;SB=-1.990e+02 GT:AD:DP:GQ:PL 1/1:0,36:37:81:908,81,0 chrXV 340856 . T G 890 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=39.78;MQ0=0;QD=22.82;SB=-3.720e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:81:923,81,0 chrXV 340867 . T C 1072 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.69;MQ0=0;QD=26.80;SB=-6.230e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:96:1105,96,0 chrXV 340897 . A G 1263 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=49.44;MQ0=0;QD=25.78;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1296,111,0 chrXV 340969 . G A 1764 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.07;MQ0=0;QD=35.28;SB=-7.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1797,144,0 chrXV 341165 . G A 1692 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.35;MQ0=0;QD=32.54;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1725,150,0 chrXV 341821 . C A 1494 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;QD=31.79;SB=-7.700e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1527,129,0 chrXV 343170 . C A 1618 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=31.73;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1651,138,0 chrXV 343173 . A G 1542 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=32.12;SB=-6.320e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1575,135,0 chrXV 343202 . A G 1306 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=31.85;SB=-5.310e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1339,117,0 chrXV 343216 . C A 70.51 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=1.81;SB=-6.285e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:12:103,12,0 chrXV 343222 . A C 37.97 filter AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.81;MQ0=0;QD=0.97;SB=-5.730e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:9:70,9,0 chrXV 343319 . T C 1829 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.71;MQ0=0;QD=32.09;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1862,156,0 chrXV 343550 . A G 2563 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.690;DP=83;Dels=0.00;FS=3.750;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.24;MQ0=0;MQRankSum=0.355;QD=30.88;ReadPosRankSum=1.064;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:1,82:83:99:2596,223,0 chrXV 343770 . G A 2106 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=1.4942;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=31.91;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:2139,181,0 chrXV 344523 . T C 2093 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.03;MQ0=0;QD=30.78;SB=-1.077e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2126,187,0 chrXV 344777 . T C 2332 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-0.811;DP=79;Dels=0.00;FS=4.663;HaplotypeScore=0.9992;MLEAC=2;MLEAF=1.00;MQ=40.03;MQ0=0;MQRankSum=-1.338;QD=29.52;ReadPosRankSum=-0.460;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:1,78:79:99:2365,180,0 chrXV 344784 . T C 858.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.638;DP=79;Dels=0.00;FS=33.968;HaplotypeScore=1.7878;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=0;MQRankSum=-4.797;QD=10.86;ReadPosRankSum=-2.159;SB=-1.040e+02 GT:AD:DP:GQ:PL 0/1:40,39:79:99:888,0,1076 chrXV 344787 . C T 860.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=6.466;DP=79;Dels=0.00;FS=33.968;HaplotypeScore=1.7878;MLEAC=1;MLEAF=0.500;MQ=40.03;MQ0=0;MQRankSum=-3.618;QD=10.89;ReadPosRankSum=-0.400;SB=-1.190e+02 GT:AD:DP:GQ:PL 0/1:39,39:79:99:890,0,986 chrXV 344813 . T C 2183 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-1.691;DP=84;Dels=0.00;FS=5.626;HaplotypeScore=3.7810;MLEAC=2;MLEAF=1.00;MQ=35.05;MQ0=0;MQRankSum=-1.361;QD=25.99;ReadPosRankSum=-0.289;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:1,83:84:99:2216,171,0 chrXV 344820 . T C 1663.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037;DP=88;Dels=0.00;FS=14.814;HaplotypeScore=5.5564;MLEAC=1;MLEAF=0.500;MQ=34.52;MQ0=0;MQRankSum=1.125;QD=18.90;ReadPosRankSum=3.411;SB=-5.300e+02 GT:AD:DP:GQ:PL 0/1:12,76:88:75:1693,0,75 chrXV 344823 . C T 1707.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.482;DP=87;Dels=0.00;FS=16.224;HaplotypeScore=4.6051;MLEAC=1;MLEAF=0.500;MQ=33.65;MQ0=0;MQRankSum=-1.630;QD=19.62;ReadPosRankSum=1.936;SB=-5.330e+02 GT:AD:DP:GQ:PL 0/1:10,77:87:99:1737,0,100 chrXV 344849 . T C 556 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=29.22;MQ0=0;QD=13.24;SB=-3.970e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:54:589,54,0 chrXV 344856 . T C 189.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DP=40;Dels=0.00;FS=9.193;HaplotypeScore=1.7046;MLEAC=1;MLEAF=0.500;MQ=28.27;MQ0=0;MQRankSum=0.194;QD=4.73;ReadPosRankSum=4.437;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:31,9:40:99:219,0,219 chrXV 344865 . T A 234.03 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.564;DP=42;Dels=0.00;FS=10.529;HaplotypeScore=1.4538;MLEAC=2;MLEAF=1.00;MQ=27.97;MQ0=0;MQRankSum=-0.686;QD=5.57;ReadPosRankSum=2.564;SB=-5.603e+01 GT:AD:DP:GQ:PL 1/1:28,13:42:24:267,24,0 chrXV 344866 . T C 220.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.615;DP=42;Dels=0.00;FS=10.688;HaplotypeScore=1.4538;MLEAC=1;MLEAF=0.500;MQ=27.97;MQ0=0;MQRankSum=0.760;QD=5.24;ReadPosRankSum=1.854;SB=-5.901e+01 GT:AD:DP:GQ:PL 0/1:28,14:42:99:250,0,216 chrXV 344872 . T A 117.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.059;DP=69;Dels=0.00;FS=15.653;HaplotypeScore=0.6651;MLEAC=1;MLEAF=0.500;MQ=28.16;MQ0=1;MQRankSum=1.701;QD=1.70;ReadPosRankSum=4.804;SB=-1.220e+02 GT:AD:DP:GQ:PL 0/1:41,28:69:99:147,0,942 chrXV 344882 . T C 72.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060;DP=86;Dels=0.00;FS=22.953;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=28.15;MQ0=2;MQRankSum=0.204;QD=0.84;ReadPosRankSum=2.102;SB=-8.601e+01 GT:AD:DP:GQ:PL 0/1:58,28:86:99:102,0,1375 chrXV 344884 . G A 63.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.439;DP=89;Dels=0.00;FS=22.415;HaplotypeScore=0.9789;MLEAC=1;MLEAF=0.500;MQ=28.18;MQ0=2;MQRankSum=-0.722;QD=0.71;ReadPosRankSum=1.958;SB=-1.110e+02 GT:AD:DP:GQ:PL 0/1:61,28:89:93:93,0,1439 chrXV 344901 . G A 1681 SnpCluster AC=2;AF=1.00;AN=2;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=2.9043;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=2;QD=22.12;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,73:76:99:1714,156,0 chrXV 344907 . C T 42.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DP=75;Dels=0.00;FS=12.351;HaplotypeScore=2.9043;MLEAC=1;MLEAF=0.500;MQ=28.23;MQ0=1;MQRankSum=0.157;QD=0.56;ReadPosRankSum=-4.101;SB=-6.201e+01 GT:AD:DP:GQ:PL 0/1:57,18:75:72:72,0,1406 chrXV 344910 . A G 48.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.191;DP=74;Dels=0.00;FS=12.511;HaplotypeScore=1.9085;MLEAC=1;MLEAF=0.500;MQ=28.22;MQ0=1;MQRankSum=1.478;QD=0.65;ReadPosRankSum=-4.575;SB=-6.101e+01 GT:AD:DP:GQ:PL 0/1:56,18:74:78:78,0,1343 chrXV 344917 . G A 54.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.817;DP=67;Dels=0.00;FS=15.835;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=28.56;MQ0=0;MQRankSum=-2.399;QD=0.81;ReadPosRankSum=-5.439;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:50,17:67:84:84,0,1287 chrXV 344921 . T C 1385 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=29.9480;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=22.34;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1418,129,0 chrXV 344928 . T C 1126.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.421;DP=53;Dels=0.00;FS=2.826;HaplotypeScore=9.9832;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.155;QD=21.25;ReadPosRankSum=2.574;SB=-4.660e+02 GT:AD:DP:GQ:PL 0/1:13,40:53:99:1156,0,187 chrXV 344937 . T A 1001 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=-2.397;DP=49;Dels=0.00;FS=1.228;HaplotypeScore=3.9933;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;MQRankSum=-0.336;QD=20.43;ReadPosRankSum=2.679;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:15,34:49:38:1034,38,0 chrXV 344938 . T C 935.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-3.590;DP=49;Dels=0.00;FS=1.228;HaplotypeScore=3.9933;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.727;QD=19.08;ReadPosRankSum=2.592;SB=-3.740e+02 GT:AD:DP:GQ:PL 0/1:15,34:49:99:965,0,261 chrXV 344944 . T A 166.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-0.702;DP=51;Dels=0.00;FS=4.893;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.400;QD=3.26;ReadPosRankSum=-1.481;SB=-1.070e+02 GT:AD:DP:GQ:PL 0/1:38,13:51:99:196,0,1060 chrXV 344954 . T C 157.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494;DP=56;Dels=0.00;FS=6.974;HaplotypeScore=1.7866;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=0.019;QD=2.80;ReadPosRankSum=-1.029;SB=-9.501e+01 GT:AD:DP:GQ:PL 0/1:43,13:56:99:187,0,1148 chrXV 344956 . G A 123.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.499;DP=58;Dels=0.00;FS=4.739;HaplotypeScore=1.7866;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.168;QD=2.12;ReadPosRankSum=-1.081;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:45,13:58:99:153,0,1186 chrXV 344973 . G A 668 SnpCluster AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=26.72;SB=-3.680e+02 GT:AD:DP:GQ:PL 1/1:0,25:25:63:701,63,0 chrXV 344979 . C T 19.06 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=21;Dels=0.00;FS=2.318;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.251;QD=0.91;ReadPosRankSum=-1.658;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,3:21:49:49,0,417 chrXV 344982 . A G 25.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180;DP=19;Dels=0.00;FS=2.629;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=29.00;MQ0=0;MQRankSum=-0.168;QD=1.32;ReadPosRankSum=-2.068;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:16,3:19:55:55,0,356 chrXV 344993 . T C 267.01 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.54;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:300,27,0 chrXV 345000 . T C 267.01 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.54;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:300,27,0 chrXV 345003 . C T 268.01 SnpCluster AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.62;SB=-1.340e+02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:301,27,0 chrXV 345029 . T C 368 PASS AC=2;AF=1.00;AN=2;DP=15;Dels=0.00;FS=0.000;HaplotypeScore=9.6651;MLEAC=2;MLEAF=1.00;MQ=28.04;MQ0=0;QD=24.53;SB=-2.009e+02 GT:AD:DP:GQ:PL 1/1:0,15:15:36:401,36,0 chrXV 345052 . T A 293 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.156;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.40;MQ0=0;MQRankSum=1.589;QD=12.21;ReadPosRankSum=-1.734;SB=-1.880e+02 GT:AD:DP:GQ:PL 1/1:1,23:24:30:326,30,0 chrXV 345062 . T C 164.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=1.569;QD=7.82;ReadPosRankSum=-1.073;SB=-1.931e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:18:197,18,0 chrXV 345064 . G A 157.13 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.31;MQ0=0;MQRankSum=1.569;QD=7.48;ReadPosRankSum=-1.073;SB=-1.831e+02 GT:AD:DP:GQ:PL 1/1:1,20:21:18:190,18,0 chrXV 345081 . G A 636 SnpCluster AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.65;MQ0=0;QD=15.51;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:60:669,60,0 chrXV 345087 . C T 769 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.68;MQ0=0;MQRankSum=1.655;QD=17.09;ReadPosRankSum=0.500;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:1,44:45:72:802,72,0 chrXV 345090 . A G 791 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.226;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.48;MQ0=0;MQRankSum=1.657;QD=17.20;ReadPosRankSum=1.205;SB=-4.900e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:75:824,75,0 chrXV 345097 . G A 825 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.49;MQ0=0;MQRankSum=1.659;QD=17.55;ReadPosRankSum=1.585;SB=-5.180e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:78:858,78,0 chrXV 345108 . T C 856 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.55;MQ0=0;QD=17.12;SB=-5.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:81:889,81,0 chrXV 345111 . C T 859 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=33.10;MQ0=0;QD=16.52;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:81:892,81,0 chrXV 345165 . C T 1798 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=48.02;MQ0=0;QD=31.00;SB=-8.430e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1831,159,0 chrXV 345183 . C T 1507 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=53.84;MQ0=0;QD=31.40;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1540,132,0 chrXV 345678 . C T 2273 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=54.10;MQ0=0;QD=31.14;SB=-1.217e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2306,199,0 chrXV 345689 . T C 2166 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=31.39;SB=-1.110e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2199,190,0 chrXV 345964 . T C 1868 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=32.77;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1901,159,0 chrXV 346267 . A G 1639 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=29.80;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1672,147,0 chrXV 346309 . A G 1761 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.66;MQ0=0;QD=25.90;SB=-8.570e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:1794,162,0 chrXV 346376 . G A 2307 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107;DP=72;Dels=0.00;FS=3.522;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=1.684;QD=32.04;ReadPosRankSum=0.577;SB=-1.087e+03 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2340,196,0 chrXV 346416 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.69;SB=-6.490e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1458,129,0 chrXV 346564 . G A 1494 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=32.48;SB=-5.000e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1527,129,0 chrXV 347064 . A G 2872 PASS AC=2;AF=1.00;AN=2;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=32.27;SB=-1.509e+03 GT:AD:DP:GQ:PL 1/1:0,89:89:99:2905,247,0 chrXV 347117 . T A 3056 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.86;SB=-1.228e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:99:3089,253,0 chrXV 347325 . A G 1684 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.61;MQ0=0;QD=28.54;SB=-7.590e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1717,147,0 chrXV 347552 . C G 2962 PASS AC=2;AF=1.00;AN=2;DP=90;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.11;MQ0=0;QD=32.91;SB=-1.331e+03 GT:AD:DP:GQ:PL 1/1:0,90:90:99:2995,262,0 chrXV 347788 . T C 1547 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=27.62;SB=-8.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1580,135,0 chrXV 347793 . A G 1546 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=58.76;MQ0=0;QD=27.61;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,55:56:99:1579,135,0 chrXV 347863 . G T 2005 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.16;MQ0=0;QD=29.93;SB=-1.130e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2038,174,0 chrXV 347921 . A G 1863 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=31.58;SB=-1.024e+03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1896,162,0 chrXV 347922 . C T 1930 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.18;MQ0=0;QD=32.71;SB=-1.049e+03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1963,162,0 chrXV 348030 . A G 1852 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=4.8254;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;MQRankSum=1.675;QD=30.36;ReadPosRankSum=1.619;SB=-9.510e+02 GT:AD:DP:GQ:PL 1/1:1,60:61:99:1885,165,0 chrXV 348098 . T C 2309 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=31.63;SB=-1.170e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2342,199,0 chrXV 348149 . C T 2340 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.43;SB=-1.171e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2373,202,0 chrXV 348182 . A G 1646 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=34.29;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1679,141,0 chrXV 348210 . G A 1629 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=34.66;SB=-7.820e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1662,138,0 chrXV 348325 . G A 1894 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.57;SB=-9.370e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1927,162,0 chrXV 348346 . C T 1816 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.675;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=2.8357;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;MQRankSum=0.693;QD=30.27;ReadPosRankSum=1.386;SB=-1.016e+03 GT:AD:DP:GQ:PL 1/1:1,59:60:99:1849,156,0 chrXV 348389 . A G 2014 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=2.7202;MLEAC=2;MLEAF=1.00;MQ=59.05;MQ0=0;QD=31.47;SB=-9.240e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2047,177,0 chrXV 348459 . T C 1338 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.41;SB=-7.150e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1371,120,0 chrXV 348559 . C T 1240 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.41;MQ0=0;QD=31.79;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1273,105,0 chrXV 348588 . C T 18.82 LowQual;filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.05;FS=0.000;HaplotypeScore=4.5089;MLEAC=2;MLEAF=1.00;MQ=57.87;MQ0=0;QD=0.43;SB=-7.168e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:6:50,6,0 chrXV 348744 . A G 1773 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.05;SB=-3.710e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1806,153,0 chrXV 349164 . T C 1696 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=29.75;SB=-5.060e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1729,150,0 chrXV 349328 . T C 1812 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.95;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1845,159,0 chrXV 351607 . C T 2102 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.34;SB=-9.330e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2135,178,0 chrXV 351721 . A G 1495 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.99;MQ0=0;QD=32.50;SB=-3.500e+02 GT:AD:DP:GQ:PL 1/1:1,45:46:99:1528,132,0 chrXV 351780 . T C 1232 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.33;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1265,108,0 chrXV 351787 . C T 1311 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.43;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1344,111,0 chrXV 351979 . T C 2018 PASS AC=2;AF=1.00;AN=2;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=3.7852;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=30.58;SB=-8.180e+02 GT:AD:DP:GQ:PL 1/1:0,65:66:99:2051,178,0 chrXV 352012 . C T 1779 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9578;MLEAC=2;MLEAF=1.00;MQ=58.88;MQ0=0;QD=32.94;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1812,150,0 chrXV 352075 . T C 1673 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.17;SB=-6.450e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1706,147,0 chrXV 352138 . G A 1209 PASS AC=2;AF=1.00;AN=2;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.82;SB=-3.660e+02 GT:AD:DP:GQ:PL 1/1:0,38:38:99:1242,105,0 chrXV 352379 . C T 1618 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=33.71;SB=-7.050e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1651,138,0 chrXV 352665 . A G 1759 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9332;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=28.84;SB=-9.690e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1792,156,0 chrXV 352775 . A G 1628 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.31;SB=-6.700e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1661,138,0 chrXV 353226 . C G 1764 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.28;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1797,156,0 chrXV 353491 . T C 1802 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.18;SB=-9.640e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1835,156,0 chrXV 353662 . C T 1794 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=32.62;SB=-6.110e+02 GT:AD:DP:GQ:PL 1/1:0,54:55:99:1827,159,0 chrXV 353934 . C T 1605 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=33.44;SB=-6.590e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1638,135,0 chrXV 354230 . C G 1534 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=32.64;SB=-7.830e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1567,132,0 chrXV 354233 . A G 1512 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=31.50;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1545,132,0 chrXV 359260 . A T 2465 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.72;SB=-8.380e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2498,205,0 chrXV 367673 . A G 1425 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.63;MQ0=0;QD=27.94;SB=-7.640e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1458,126,0 chrXV 389237 . T G 2622 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.21;SB=-7.610e+02 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2655,229,0 chrXV 418349 . G A 1429 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.76;SB=-3.990e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1462,123,0 chrXV 479275 . A T 53.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807;DP=77;Dels=0.00;FS=39.873;HaplotypeScore=4.2311;MLEAC=1;MLEAF=0.500;MQ=59.94;MQ0=0;MQRankSum=0.077;QD=0.69;ReadPosRankSum=-1.528;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,31:77:83:83,0,671 chrXV 479283 . A T 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985;DP=53;Dels=0.00;FS=23.932;HaplotypeScore=7.1723;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=1.406;QD=0.29;ReadPosRankSum=-2.710;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,15:53:45:45,0,604 chrXV 514879 . A G 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.515;DP=42;Dels=0.00;FS=61.752;HaplotypeScore=7.7670;MLEAC=1;MLEAF=0.500;MQ=54.85;MQ0=0;MQRankSum=-2.084;QD=2.48;ReadPosRankSum=0.652;SB=4.350e-03 GT:AD:DP:GQ:PL 0/1:25,17:42:99:134,0,689 chrXV 556870 . T G 1300 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=3.9929;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=29.55;SB=-7.430e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1333,114,0 chrXV 557021 . T A 1275 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.83;MQ0=0;QD=34.46;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1308,105,0 chrXV 557194 . T G 2102 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.84;SB=-9.450e+02 GT:AD:DP:GQ:PL 1/1:0,63:64:99:2135,181,0 chrXV 557623 . T C 1771 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=32.20;SB=-7.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1804,156,0 chrXV 557722 . T C 1376 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.40;SB=-4.570e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1409,120,0 chrXV 557758 . A G 1773 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.45;SB=-8.110e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1806,156,0 chrXV 558497 . G A 1480 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.20;SB=-7.990e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1513,126,0 chrXV 559459 . T C 1764 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.47;MQ0=0;QD=32.07;SB=-4.850e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1797,153,0 chrXV 560186 . A G 1335 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=31.05;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1368,117,0 chrXV 560189 . T A 1384 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=32.19;SB=-7.000e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1417,120,0 chrXV 560585 . A G 1492 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=28.69;SB=-8.090e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1525,132,0 chrXV 560610 . A G 1416 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.97;MQ0=0;QD=30.13;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1449,123,0 chrXV 560807 . A G 1369 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.340;DP=54;Dels=0.00;FS=6.451;HaplotypeScore=33.8030;MLEAC=2;MLEAF=1.00;MQ=57.11;MQ0=0;MQRankSum=0.425;QD=25.35;ReadPosRankSum=1.405;SB=-4.701e+01 GT:AD:DP:GQ:PL 1/1:1,52:53:99:1402,120,0 chrXV 560857 . G A 1403 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.6553;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=22.27;SB=-6.310e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1436,126,0 chrXV 561115 . A T 1376 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=33.56;SB=-4.140e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1409,117,0 chrXV 561511 . G A 1640 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.37;SB=-4.660e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1673,144,0 chrXV 562082 . C T 2217 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.7073;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=34.11;SB=-1.091e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2250,187,0 chrXV 562162 . C T 1885 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.6828;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=28.13;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1918,162,0 chrXV 562357 . G A 1362 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.43;SB=-5.450e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1395,114,0 chrXV 562468 . A G 2113 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=4.6482;MLEAC=2;MLEAF=1.00;MQ=59.04;MQ0=0;QD=30.19;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2146,184,0 chrXV 562540 . T G 1764 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.95;SB=-9.900e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1797,153,0 chrXV 562567 . C T 1855 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=33.12;SB=-7.200e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1888,159,0 chrXV 562672 . G C 1293 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.32;SB=-4.340e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1326,114,0 chrXV 562688 . A C 1503 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.98;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1536,132,0 chrXV 562828 . G A 1712 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.92;SB=-8.980e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1745,141,0 chrXV 563008 . G A 1642 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=33.51;SB=-7.330e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1675,138,0 chrXV 563766 . T C 1631 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.12;SB=-4.130e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1664,141,0 chrXV 563862 . A G 1818 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=29.32;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1851,153,0 chrXV 563917 . G A 2524 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.9913;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=32.78;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2557,208,0 chrXV 563945 . A G 1963 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.27;SB=-7.720e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:1996,172,0 chrXV 564207 . T G 1713 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=31.15;SB=-8.900e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1746,150,0 chrXV 564208 . C A 1744 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=31.71;SB=-9.210e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1777,150,0 chrXV 564258 . C T 1958 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.59;MQ0=0;QD=34.96;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1991,163,0 chrXV 564299 . G C 2001 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.35;SB=-8.240e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2034,175,0 chrXV 564451 . A G 1336 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=30.36;SB=-5.210e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1369,117,0 chrXV 564575 . C T 1280 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.00;SB=-2.280e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1313,108,0 chrXV 565820 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=31.29;SB=-8.120e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1535,132,0 chrXV 565891 . T C 1911 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=32.95;SB=-7.520e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1944,168,0 chrXV 566002 . C G 1315 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.72;SB=-6.090e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1348,114,0 chrXV 566126 . T A 1601 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.02;SB=-7.890e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1634,141,0 chrXV 566165 . T C 1778 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.75;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1811,156,0 chrXV 566210 . A G 2129 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.31;SB=-8.490e+02 GT:AD:DP:GQ:PL 1/1:0,67:68:99:2162,187,0 chrXV 566353 . G A 1666 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=55.31;MQ0=0;QD=32.67;SB=-5.390e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1699,141,0 chrXV 566373 . A C 1983 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=1.7319;MLEAC=2;MLEAF=1.00;MQ=55.06;MQ0=0;QD=29.16;SB=-7.650e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2016,174,0 chrXV 566375 . G A 2055 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=1.7319;MLEAC=2;MLEAF=1.00;MQ=55.28;MQ0=0;QD=28.94;SB=-8.840e+02 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2088,177,0 chrXV 566430 . G T 1790 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.56;MQ0=0;QD=28.87;SB=-9.560e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:1823,150,0 chrXV 566502 . A G 1264 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.44;MQ0=0;QD=30.83;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1297,114,0 chrXV 566542 . A C 1450 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.72;SB=-6.210e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1483,126,0 chrXV 566564 . A C 998 PASS AC=2;AF=1.00;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.24;SB=-5.010e+02 GT:AD:DP:GQ:PL 1/1:0,33:33:90:1031,90,0 chrXV 566820 . A T 1625 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=31.86;SB=-8.140e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1658,138,0 chrXV 566900 . C A 1790 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=3.1263;MLEAC=2;MLEAF=1.00;MQ=57.66;MQ0=0;QD=29.83;SB=-6.970e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1823,156,0 chrXV 567085 . T C 1554 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=33.06;SB=-5.890e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1587,132,0 chrXV 567262 . G A 2183 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=55.59;MQ0=0;QD=33.58;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2216,187,0 chrXV 567267 . C T 1993 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=1.8279;MLEAC=2;MLEAF=1.00;MQ=55.13;MQ0=0;QD=33.78;SB=-9.760e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2026,174,0 chrXV 567276 . A G 1989 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=2;MLEAF=1.00;MQ=56.10;MQ0=0;QD=32.61;SB=-9.080e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2022,177,0 chrXV 567367 . C T 1455 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;QD=30.96;SB=-1.770e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1488,123,0 chrXV 568141 . T C 1148 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=31.03;SB=-5.910e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1181,99,0 chrXV 568707 . G A 1260 PASS AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.9665;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=34.05;SB=-2.820e+02 GT:AD:DP:GQ:PL 1/1:0,37:37:99:1293,108,0 chrXV 569058 . T A 1297 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=1.4450;MLEAC=2;MLEAF=1.00;MQ=57.71;MQ0=0;QD=31.63;SB=-1.440e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1330,111,0 chrXV 569259 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.65;SB=-7.530e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1837,156,0 chrXV 569690 . G A 1117 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=32.8613;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=26.60;SB=-5.900e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:96:1150,96,0 chrXV 569770 . C T 1317 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=1.7608;MLEAC=2;MLEAF=1.00;MQ=59.08;MQ0=0;QD=29.27;SB=-3.590e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1350,114,0 chrXV 569787 . A G 1804 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.26;MQ0=0;QD=28.19;SB=-8.960e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1837,159,0 chrXV 569803 . T A 2002 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=58.04;MQ0=0;QD=32.29;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2035,174,0 chrXV 569825 . C T 2041 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.10;MQ0=0;QD=31.89;SB=-1.044e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2074,177,0 chrXV 570373 . A T 975 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.34;MQ0=0;QD=27.86;SB=-6.050e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:81:1008,81,0 chrXV 571079 . T C 1599 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=31.35;SB=-4.500e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1632,144,0 chrXV 571108 . C T 1425 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9958;MLEAC=2;MLEAF=1.00;MQ=58.95;MQ0=0;QD=32.39;SB=-4.910e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1458,120,0 chrXV 571256 . A C 1481 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.51;SB=-7.340e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1514,129,0 chrXV 571300 . G T 1634 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.68;SB=-8.670e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1667,138,0 chrXV 571406 . A G 1311 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.62;SB=-4.860e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1344,114,0 chrXV 571445 . G C 1505 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.72;SB=-5.950e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1538,129,0 chrXV 571487 . G A 1675 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=32.21;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1708,144,0 chrXV 571945 . C T 1301 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.36;SB=-6.890e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1334,111,0 chrXV 572041 . G A 1351 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=47.12;MQ0=0;QD=30.70;SB=-6.300e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1384,120,0 chrXV 572070 . C T 1616 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=47.08;MQ0=0;QD=29.93;SB=-5.750e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1649,147,0 chrXV 572083 . G A 1502 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=45.89;MQ0=0;QD=30.04;SB=-4.420e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1535,135,0 chrXV 572095 . A G 1428 SnpCluster AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.92;MQ0=0;QD=29.75;SB=-4.290e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1461,129,0 chrXV 572098 . G A 1409 SnpCluster AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.51;MQ0=0;QD=29.98;SB=-4.030e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1442,126,0 chrXV 572102 . C T 1637 SnpCluster AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.50;MQ0=0;QD=30.31;SB=-6.790e+02 GT:AD:DP:GQ:PL 1/1:0,53:54:99:1670,144,0 chrXV 572407 . T C 1531 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=57.70;MQ0=0;QD=30.02;SB=-8.230e+02 GT:AD:DP:GQ:PL 1/1:0,50:51:99:1564,138,0 chrXV 572419 . T C 1569 PASS AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.82;MQ0=0;QD=30.17;SB=-7.680e+02 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1602,141,0 chrXV 572941 . A G 1520 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.51;MQ0=0;QD=32.34;SB=-5.840e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1553,135,0 chrXV 573228 . T C 1960 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.11;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1993,168,0 chrXV 573248 . A G 1674 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.37;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:1707,147,0 chrXV 573262 . G A 1762 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=30.38;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1795,153,0 chrXV 573312 . T C 1425 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.92;MQ0=0;QD=31.67;SB=-3.940e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1458,126,0 chrXV 573324 . A T 1372 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=57.82;MQ0=0;QD=31.91;SB=-3.420e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1405,120,0 chrXV 573358 . A G 1502 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.47;MQ0=0;QD=31.96;SB=-4.400e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1535,135,0 chrXV 573377 . A G 1610 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.69;MQ0=0;QD=32.20;SB=-6.550e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1643,144,0 chrXV 573378 . A G 1603 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.76;MQ0=0;QD=31.43;SB=-6.930e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1636,144,0 chrXV 573442 . C T 1515 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.48;MQ0=0;QD=32.93;SB=-6.810e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1548,129,0 chrXV 574266 . A T 2239 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.11;MQ0=0;QD=32.93;SB=-1.133e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2272,190,0 chrXV 574378 . G A 1516 PASS AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.9947;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=34.45;SB=-6.780e+02 GT:AD:DP:GQ:PL 1/1:0,44:44:99:1549,129,0 chrXV 574716 . C T 2174 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.57;MQ0=0;QD=31.51;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2207,187,0 chrXV 574776 . T C 1921 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=52.09;MQ0=0;QD=31.49;SB=-8.390e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1954,168,0 chrXV 574821 . C T 2201 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.10;MQ0=0;QD=32.37;SB=-8.940e+02 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2234,190,0 chrXV 575544 . A G 265.01 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=20.39;SB=-2.272e-02 GT:AD:DP:GQ:PL 1/1:0,13:13:27:298,27,0 chrXV 577242 . C T 725 filter AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.39;MQ0=1;QD=30.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,24:24:69:758,69,0 chrXV 577362 . T C 997 filter AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=26.06;MQ0=16;QD=21.21;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:9,38:47:90:1030,90,0 chrXV 577639 . A G 1157 PASS AC=2;AF=1.00;AN=2;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.79;MQ0=0;QD=33.06;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,35:35:99:1190,102,0 chrXV 577827 . C T 1570 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=50.33;MQ0=0;QD=34.13;SB=-5.490e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1603,132,0 chrXV 577890 . C T 1946 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.03;MQ0=0;QD=30.89;SB=-5.780e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1979,174,0 chrXV 577985 . G T 1839 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=57.54;MQ0=0;QD=34.06;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1872,153,0 chrXV 578634 . T C 2513 PASS AC=2;AF=1.00;AN=2;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.51;SB=-6.860e+02 GT:AD:DP:GQ:PL 1/1:0,75:75:99:2546,223,0 chrXV 578881 . T G 1534 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=26.91;SB=-8.760e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:1567,135,0 chrXV 578986 . T C 1682 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.58;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1715,144,0 chrXV 579079 . A G 2065 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=2.5439;MLEAC=2;MLEAF=1.00;MQ=58.93;MQ0=0;QD=31.77;SB=-9.200e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2098,178,0 chrXV 579277 . G A 2032 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.9867;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.31;SB=-7.560e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2065,172,0 chrXV 580206 . A G 1288 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.45;MQ0=0;QD=30.67;SB=-4.210e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1321,111,0 chrXV 580333 . C G 1478 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.13;SB=-7.320e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1511,129,0 chrXV 580351 . C T 1581 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.94;SB=-7.220e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1614,135,0 chrXV 580924 . G A 1638 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.54;MQ0=0;QD=32.76;SB=-6.580e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1671,138,0 chrXV 580957 . T C 1423 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=29.65;SB=-4.520e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1456,126,0 chrXV 581450 . T C 1297 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.88;SB=-5.580e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1330,114,0 chrXV 581825 . C T 1059 PASS AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.36;MQ0=0;QD=29.42;SB=-5.920e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:93:1092,93,0 chrXV 582005 . C T 1478 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=29.56;SB=-8.470e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1511,123,0 chrXV 583723 . T C 1286 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=29.91;SB=-3.450e+02 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1319,114,0 chrXV 584081 . T C 1992 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.20;SB=-8.150e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2025,175,0 chrXV 584552 . G A 1837 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=30.11;SB=-1.065e+03 GT:AD:DP:GQ:PL 1/1:0,61:61:99:1870,156,0 chrXV 585683 . T C 1109 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=27.72;SB=-6.880e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:99:1142,99,0 chrXV 585698 . T C 1137 PASS AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=28.42;SB=-5.930e+02 GT:AD:DP:GQ:PL 1/1:0,39:40:99:1170,102,0 chrXV 585808 . T C 1430 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=30.43;SB=-5.190e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1463,129,0 chrXV 586304 . T C 1686 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;QD=35.12;SB=-3.460e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1719,144,0 chrXV 586345 . T C 2415 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.70;MQ0=0;QD=30.96;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,78:78:99:2448,211,0 chrXV 586476 . G C 1772 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=1.9321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=31.64;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,56:56:99:1805,153,0 chrXV 586515 . C T 1303 PASS AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.19;MQ0=0;QD=28.33;SB=-5.720e+02 GT:AD:DP:GQ:PL 1/1:0,46:46:99:1336,114,0 chrXV 837032 . G T 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.334;DP=30;Dels=0.00;FS=35.549;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.85;MQ0=0;MQRankSum=-1.751;QD=0.97;ReadPosRankSum=-3.236;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,9:30:59:59,0,561 chrXV 909093 . G T 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214;DP=54;Dels=0.00;FS=43.012;HaplotypeScore=23.4363;MLEAC=1;MLEAF=0.500;MQ=60.49;MQ0=0;MQRankSum=-0.921;QD=1.46;ReadPosRankSum=-1.236;SB=-6.347e-03 GT:AD:DP:GQ:PL 0/1:24,29:54:99:109,0,209 chrXV 988096 . G A 1257 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=25.14;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,46:50:99:1290,114,0 chrXV 1000993 . A T 97.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.375;DP=48;Dels=0.02;FS=90.421;HaplotypeScore=1.5449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.000;QD=2.02;ReadPosRankSum=-2.354;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:37,10:47:99:127,0,334 chrXV 1000999 . A T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.071;DP=53;Dels=0.00;FS=61.819;HaplotypeScore=1.5449;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.520;QD=0.38;ReadPosRankSum=-3.259;SB=-6.302e-03 GT:AD:DP:GQ:PL 0/1:44,9:53:50:50,0,519 chrXV 1075097 . G A 2468 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=54.84;MQ0=0;QD=34.28;SB=-7.270e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2501,208,0 chrXVI 33484 . T G 1953 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=36.85;SB=-1.019e+03 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1986,147,0 chrXVI 35711 . C T 1935 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.94;SB=-8.520e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1968,150,0 chrXVI 35776 . G A 2318 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.43;MQ0=0;QD=35.66;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2351,184,0 chrXVI 36977 . C T 1858 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.55;MQ0=0;QD=36.43;SB=-8.440e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1891,147,0 chrXVI 38391 . G A 1968 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=1.5226;MLEAC=2;MLEAF=1.00;MQ=58.68;MQ0=0;QD=34.53;SB=-9.340e+02 GT:AD:DP:GQ:PL 1/1:0,56:57:99:2001,153,0 chrXVI 39105 . A G 1685 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.9789;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.10;SB=-3.690e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1718,132,0 chrXVI 39420 . C T 1685 PASS AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.53;MQ0=0;QD=34.39;SB=-7.290e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:99:1718,141,0 chrXVI 39840 . T C 482 PASS AC=2;AF=1.00;AN=2;DP=18;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=26.78;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,18:18:39:515,39,0 chrXVI 132592 . C T 1897 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.8667;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.71;SB=-9.120e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1930,150,0 chrXVI 135307 . C T 2154 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.40;MQ0=0;QD=36.51;SB=-1.112e+03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2187,169,0 chrXVI 167015 . C T 3063 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.90;SB=-1.020e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3096,235,0 chrXVI 190282 . C T 2401 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.681;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=1.5253;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.750;QD=35.84;ReadPosRankSum=0.026;SB=-3.750e+02 GT:AD:DP:GQ:PL 1/1:1,66:67:99:2434,187,0 chrXVI 191944 . C T 1742 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.06;SB=-6.180e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1775,135,0 chrXVI 201881 . C T 1550 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.98;SB=-7.760e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1583,123,0 chrXVI 216772 . G T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.592;DP=33;Dels=0.00;FS=44.479;HaplotypeScore=7.0964;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=0.063;QD=0.61;ReadPosRankSum=-3.004;SB=-6.508e-03 GT:AD:DP:GQ:PL 0/1:25,8:33:50:50,0,690 chrXVI 310611 . C T 1726 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=0.400;QD=33.19;ReadPosRankSum=-1.199;SB=-9.540e+02 GT:AD:DP:GQ:PL 1/1:1,51:52:97:1759,97,0 chrXVI 336472 . C T 1424 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.09;MQ0=0;QD=34.73;SB=-5.990e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1457,111,0 chrXVI 338828 . T C 1404 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.657;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=6.6533;MLEAC=2;MLEAF=1.00;MQ=58.51;MQ0=0;MQRankSum=-0.075;QD=29.87;ReadPosRankSum=1.281;SB=-5.340e+02 GT:AD:DP:GQ:PL 1/1:1,45:47:99:1437,117,0 chrXVI 338953 . A G 2143 PASS AC=2;AF=1.00;AN=2;DP=61;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=35.13;SB=-6.610e+02 GT:AD:DP:GQ:PL 1/1:0,61:61:99:2176,172,0 chrXVI 339149 . A T 2126 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.66;SB=-1.014e+03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2159,169,0 chrXVI 339840 . A G 1350 PASS AC=2;AF=1.00;AN=2;DP=39;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.62;SB=-5.820e+02 GT:AD:DP:GQ:PL 1/1:0,39:39:99:1383,105,0 chrXVI 340194 . T C 1601 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.58;SB=-6.720e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1634,126,0 chrXVI 340393 . T C 2211 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.29;MQ0=0;QD=34.02;SB=-8.790e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2244,181,0 chrXVI 341700 . C T 1874 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.65;MQ0=0;QD=35.36;SB=-5.130e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1907,147,0 chrXVI 341808 . T G 2698 PASS AC=2;AF=1.00;AN=2;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.31;SB=-1.288e+03 GT:AD:DP:GQ:PL 1/1:0,81:81:99:2731,211,0 chrXVI 342089 . T A 1701 PASS AC=2;AF=1.00;AN=2;DP=47;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.94;MQ0=0;QD=36.19;SB=-7.160e+02 GT:AD:DP:GQ:PL 1/1:0,47:47:99:1734,129,0 chrXVI 342761 . C T 2050 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.75;SB=-8.770e+02 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2083,160,0 chrXVI 371322 . G A 1475 PASS AC=2;AF=1.00;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.12;SB=-7.100e+02 GT:AD:DP:GQ:PL 1/1:0,42:42:99:1508,117,0 chrXVI 372490 . G T 1869 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.26;SB=-9.470e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1902,144,0 chrXVI 373351 . T C 1800 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.29;SB=-9.380e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:99:1833,144,0 chrXVI 373419 . T G 1504 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.588;DP=48;Dels=0.00;FS=5.051;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.03;MQ0=0;MQRankSum=-1.588;QD=31.33;ReadPosRankSum=1.588;SB=-5.030e+02 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1537,126,0 chrXVI 373422 . T A 1466 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.585;DP=47;Dels=0.00;FS=5.260;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.01;MQ0=0;MQRankSum=-0.037;QD=31.19;ReadPosRankSum=1.659;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:1,46:47:99:1499,126,0 chrXVI 373522 . T C 1928 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=1.7753;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.05;SB=-8.020e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:1961,153,0 chrXVI 373550 . C T 1999 PASS AC=2;AF=1.00;AN=2;DP=55;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=36.35;SB=-9.860e+02 GT:AD:DP:GQ:PL 1/1:0,55:55:99:2032,153,0 chrXVI 373612 . T A 1286 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.87;MQ0=0;QD=31.37;SB=-5.100e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1319,105,0 chrXVI 373946 . G A 2291 PASS AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.95;SB=-7.840e+02 GT:AD:DP:GQ:PL 1/1:0,62:62:99:2324,178,0 chrXVI 374363 . G A 1472 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.90;SB=-6.360e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1505,117,0 chrXVI 374826 . A G 2291 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9973;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.37;SB=-6.020e+02 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2324,181,0 chrXVI 376139 . C T 2406 PASS AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.59;SB=-1.244e+03 GT:AD:DP:GQ:PL 1/1:0,64:64:99:2439,190,0 chrXVI 395113 . G A 3517.01 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.6651;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=38.23;SB=-1.599e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3517,268,0 chrXVI 398278 . C A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.219;DP=53;Dels=0.00;FS=31.510;HaplotypeScore=10.6173;MLEAC=1;MLEAF=0.500;MQ=57.79;MQ0=0;MQRankSum=-0.570;QD=0.43;ReadPosRankSum=-2.147;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,20:53:53:53,0,643 chrXVI 403300 . G T 237.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.916;DP=46;Dels=0.00;FS=63.058;HaplotypeScore=1.7219;MLEAC=1;MLEAF=0.500;MQ=58.99;MQ0=0;MQRankSum=-0.443;QD=5.15;ReadPosRankSum=-2.759;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,22:46:99:267,0,777 chrXVI 415024 . C G 71.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443;DP=29;Dels=0.00;FS=44.969;HaplotypeScore=4.0813;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.492;QD=2.45;ReadPosRankSum=-3.345;SB=-6.511e-03 GT:AD:DP:GQ:PL 0/1:19,10:29:99:101,0,633 chrXVI 415030 . T G 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.703;DP=28;Dels=0.00;FS=28.067;HaplotypeScore=4.6596;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.321;QD=1.50;ReadPosRankSum=-1.895;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:21,7:28:72:72,0,745 chrXVI 424350 . G T 115.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.472;DP=33;Dels=0.00;FS=85.500;HaplotypeScore=6.7471;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=0.468;QD=3.49;ReadPosRankSum=-3.986;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:21,12:33:99:145,0,631 chrXVI 432091 . C T 1426 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.78;SB=-4.350e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:99:1459,114,0 chrXVI 498797 . T G 1763 PASS AC=2;AF=1.00;AN=2;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=36.73;SB=-9.010e+02 GT:AD:DP:GQ:PL 1/1:0,48:48:99:1796,138,0 chrXVI 502697 . G A 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075;DP=43;Dels=0.00;FS=39.489;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.58;MQ0=0;MQRankSum=0.515;QD=1.51;ReadPosRankSum=-3.917;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:29,14:43:95:95,0,100 chrXVI 576067 . T G 65.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105;DP=45;Dels=0.00;FS=21.096;HaplotypeScore=2.3437;MLEAC=1;MLEAF=0.500;MQ=59.49;MQ0=0;MQRankSum=0.945;QD=1.44;ReadPosRankSum=-3.066;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,16:45:95:95,0,618 chrXVI 759400 . T G 2524 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.68;MQ0=0;QD=34.58;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2557,196,0 chrXVI 792722 . C T 1984 PASS AC=2;AF=1.00;AN=2;DP=57;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.81;SB=-6.010e+02 GT:AD:DP:GQ:PL 1/1:0,57:57:99:2017,150,0 chrXVI 837101 . G T 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107;DP=54;Dels=0.00;FS=39.021;HaplotypeScore=8.1666;MLEAC=1;MLEAF=0.500;MQ=57.39;MQ0=0;MQRankSum=-1.541;QD=2.33;ReadPosRankSum=-2.068;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:35,19:54:99:156,0,780 chrXVI 890346 . T A 1805 PASS AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.10;SB=-8.130e+02 GT:AD:DP:GQ:PL 1/1:0,50:50:99:1838,141,0 chrXVI 894892 . C T 2016 PASS AC=2;AF=1.00;AN=2;DP=56;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.33;MQ0=0;QD=36.00;SB=-9.930e+02 GT:AD:DP:GQ:PL 1/1:1,55:56:99:2049,160,0 chrXVI 900838 . C T 1543 PASS AC=2;AF=1.00;AN=2;DP=45;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.29;SB=-7.750e+02 GT:AD:DP:GQ:PL 1/1:0,45:45:99:1576,126,0 chrXVI 906158 . C T 2226 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.10;SB=-9.300e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2259,175,0 chrXVI 908485 . C T 2294 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.9987;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.29;SB=-9.230e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2327,178,0