##fileformat=VCFv4.1 ##FILTER= ##FILTER= ##FILTER= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4"> ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##GATKCommandLine= 0.75 || QUAL < 50.0 || DP > 360 || SB > -0.1 || MQ0>=4] filterName=[filter] genotypeFilterExpression=[] genotypeFilterName=[] clusterSize=3 clusterWindowSize=10 maskExtension=0 maskName=Mask filterNotInMask=false missingValuesInExpressionsShouldEvaluateAsFailing=false invalidatePreviousFilters=false filter_reads_with_N_cigar=false filter_mismatching_base_and_quals=false filter_bases_not_stored=false",Date="Tue Jan 14 21:35:27 PST 2014",Epoch=1389764127375,Version=2.8-1-g932cd3a> ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/srv/gs1/projects/cherry/giltae/strains/hugeseq/BY4742/chrI.recal.bam] read_buffer_size=null phone_home=STANDARD gatk_key=null read_filter=[] intervals=null excludeIntervals=null interval_set_rule=UNION interval_merging=ALL interval_padding=0 reference_sequence=/srv/gs1/projects/cherry/sacCer3/sacCer3.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=1000 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=0 disable_indel_quals=false emit_original_quals=false preserve_qscores_less_than=6 defaultBaseQualities=-1 validation_strictness=LENIENT remove_program_records=false keep_program_records=false unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false generateShadowBCF=false logging_level=INFO log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT pcr_error_rate=1.0E-4 noSLOD=false annotateNDA=false min_base_quality_score=17 max_deletion_fraction=0.05 cap_max_alternate_alleles_for_indels=false min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false allReadsSP=false ignoreLaneInfo=false reference_sample_calls=(RodBinding name= source=UNBOUND) reference_sample_name=null sample_ploidy=2 min_quality_score=1 max_quality_score=40 site_quality_prior=20 min_power_threshold_for_calling=0.95 min_reference_depth=100 exclude_filtered_reference_sites=false heterozygosity=0.001 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=10.0 alleles=(RodBinding name= source=UNBOUND) max_alternate_alleles=3 dbsnp=(RodBinding name=dbsnp source=/srv/gs1/projects/cherry/giltae/hugeseq_data/snp.d/chrI_SNPs.vcf) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub no_cmdline_in_header=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub bcf=org.broadinstitute.sting.gatk.io.stubs.VariantContextWriterStub debug_file=null metrics_file=null annotation=[DepthOfCoverage, MappingQualityZero] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##reference=file:///srv/gs1/projects/cherry/sacCer3/sacCer3.fa #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BY4742 chrI 12529 . A G 377.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197;DP=77;Dels=0.00;FS=10.447;HaplotypeScore=3.5592;MLEAC=1;MLEAF=0.500;MQ=57.57;MQ0=0;MQRankSum=-0.548;QD=4.90;ReadPosRankSum=-2.774;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:59,18:77:99:407,0,1915 chrI 12594 . A T 229.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DP=136;Dels=0.00;FS=6.535;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=53.74;MQ0=1;MQRankSum=-2.753;QD=1.68;ReadPosRankSum=-3.323;SB=-1.180e+02 GT:AD:DP:GQ:PL 0/1:116,20:136:99:259,0,3415 chrI 12620 . T C 908.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.150;DP=169;Dels=0.00;FS=31.434;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=52.89;MQ0=2;MQRankSum=-0.627;QD=5.37;ReadPosRankSum=-2.447;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:123,46:169:99:938,0,3493 chrI 12690 . A T 1050.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.373;DP=301;Dels=0.00;FS=5.460;HaplotypeScore=3.6605;MLEAC=1;MLEAF=0.500;MQ=51.64;MQ0=7;MQRankSum=-1.890;QD=3.49;ReadPosRankSum=-1.640;SB=-5.600e+02 GT:AD:DP:GQ:PL 0/1:221,80:301:99:1080,0,5773 chrI 12716 . C T 428.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.479;DP=288;Dels=0.00;FS=0.619;HaplotypeScore=17.3135;MLEAC=1;MLEAF=0.500;MQ=51.67;MQ0=6;MQRankSum=0.145;QD=1.49;ReadPosRankSum=-3.916;SB=-1.880e+02 GT:AD:DP:GQ:PL 0/1:245,43:288:99:458,0,6598 chrI 12764 . T C 256.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.552;DP=197;Dels=0.00;FS=0.000;HaplotypeScore=5.9906;MLEAC=1;MLEAF=0.500;MQ=52.80;MQ0=1;MQRankSum=-2.302;QD=1.30;ReadPosRankSum=-2.191;SB=-1.010e+02 GT:AD:DP:GQ:PL 0/1:166,31:197:99:286,0,4742 chrI 25340 . C A 1683 filter AC=2;AF=1.00;AN=2;DP=64;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=36.95;MQ0=8;QD=26.30;SB=-4.950e+02 GT:AD:DP:GQ:PL 1/1:0,64:64:99:1716,144,0 chrI 25488 . G A 897.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=2.114;DP=48;Dels=0.00;FS=0.000;HaplotypeScore=3.8400;MLEAC=2;MLEAF=1.00;MQ=35.40;MQ0=3;MQRankSum=0.767;QD=18.69;ReadPosRankSum=1.863;SB=-1.270e+02 GT:AD:DP:GQ:PL 1/1:7,41:48:29:930,29,0 chrI 25497 . G A 508.46 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.333;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=3.7057;MLEAC=1;MLEAF=0.500;MQ=29.97;MQ0=3;MQRankSum=-0.401;QD=13.38;ReadPosRankSum=0.212;SB=-6.846e+01 GT:AD:DP:GQ:PL 0/1:5,33:38:1:537,0,1 chrI 25506 . C T 584 SnpCluster AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DP=35;Dels=0.00;FS=0.000;HaplotypeScore=1.7900;MLEAC=2;MLEAF=1.00;MQ=24.46;MQ0=3;MQRankSum=1.408;QD=16.69;ReadPosRankSum=1.625;SB=-6.701e+01 GT:AD:DP:GQ:PL 1/1:1,34:35:60:617,60,0 chrI 25509 . G A 257.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.960;DP=34;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=24.06;MQ0=3;MQRankSum=-0.457;QD=7.56;ReadPosRankSum=-0.188;SB=-9.959e-03 GT:AD:DP:GQ:PL 0/1:5,29:34:28:287,0,28 chrI 25512 . T C,G 283.54 SnpCluster AC=1,1;AF=0.500,0.500;AN=2;DP=33;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=23.57;MQ0=3;QD=8.59;SB=-2.543e+00 GT:AD:DP:GQ:PL 1/2:0,5,28:33:28:341,280,274,61,0,28 chrI 25515 . A G 245.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.728;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=23.71;MQ0=3;MQRankSum=-1.582;QD=6.81;ReadPosRankSum=-0.577;SB=-9.959e-03 GT:AD:DP:GQ:PL 0/1:5,31:36:28:275,0,28 chrI 25536 . G A 516 filter AC=2;AF=1.00;AN=2;DP=50;Dels=0.00;FS=0.000;HaplotypeScore=1.7323;MLEAC=2;MLEAF=1.00;MQ=21.43;MQ0=14;QD=10.32;SB=-6.554e-03 GT:AD:DP:GQ:PL 1/1:10,37:50:54:549,54,0 chrI 25542 . A G 517.04 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=21.51;MQ0=18;QD=8.21;SB=6.95 GT:AD:DP:GQ:PL 1/1:11,48:63:54:550,54,0 chrI 25560 . G A 527.79 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586;DP=66;Dels=0.00;FS=27.213;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=21.38;MQ0=17;MQRankSum=1.186;QD=8.00;ReadPosRankSum=2.014;SB=-7.922e-01 GT:AD:DP:GQ:PL 0/1:19,47:66:4:557,0,4 chrI 25584 . A G 625 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335;DP=75;Dels=0.00;FS=64.148;HaplotypeScore=2.6320;MLEAC=2;MLEAF=1.00;MQ=20.79;MQ0=22;MQRankSum=3.445;QD=8.33;ReadPosRankSum=1.366;SB=-6.528e-03 GT:AD:DP:GQ:PL 1/1:22,52:75:60:658,60,0 chrI 25599 . G A 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.655;DP=80;Dels=0.00;FS=4.986;HaplotypeScore=4.8600;MLEAC=1;MLEAF=0.500;MQ=20.39;MQ0=28;MQRankSum=1.754;QD=0.13;ReadPosRankSum=0.148;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,13:80:40:40,0,508 chrI 25611 . G A 485.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253;DP=78;Dels=0.00;FS=28.790;HaplotypeScore=3.6577;MLEAC=1;MLEAF=0.500;MQ=19.73;MQ0=32;MQRankSum=2.298;QD=6.22;ReadPosRankSum=-0.797;SB=-6.736e-03 GT:AD:DP:GQ:PL 0/1:44,34:78:40:515,0,40 chrI 25623 . G A 406.51 filter AC=2;AF=1.00;AN=2;BaseQRankSum=3.109;DP=67;Dels=0.00;FS=32.041;HaplotypeScore=6.2327;MLEAC=2;MLEAF=1.00;MQ=18.28;MQ0=30;MQRankSum=2.397;QD=6.07;ReadPosRankSum=-1.222;SB=2.49 GT:AD:DP:GQ:PL 1/1:41,26:67:12:439,12,0 chrI 26086 . C T 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.219;DP=44;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.04;MQ0=35;MQRankSum=2.219;QD=0.81;ReadPosRankSum=-0.729;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:39,5:44:6:67,6,0 chrI 26090 . T C 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;DP=44;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.04;MQ0=35;MQRankSum=2.219;QD=0.81;ReadPosRankSum=-0.361;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:39,5:44:6:67,6,0 chrI 26091 . G A 35.77 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.652;DP=44;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.04;MQ0=35;MQRankSum=2.219;QD=0.81;ReadPosRankSum=0.000;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:39,5:44:6:67,6,0 chrI 26106 . A G 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.881;DP=38;Dels=0.00;FS=13.222;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=10.81;MQ0=29;MQRankSum=2.219;QD=0.94;ReadPosRankSum=0.361;SB=-1.508e+00 GT:AD:DP:GQ:PL 1/1:33,5:38:6:67,6,0 chrI 26115 . C T 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.000;DP=36;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.86;MQ0=29;MQRankSum=1.754;QD=0.99;ReadPosRankSum=0.550;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:32,4:36:6:67,6,0 chrI 26117 . A C 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.550;DP=36;Dels=0.00;FS=8.451;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.86;MQ0=29;MQRankSum=1.754;QD=0.99;ReadPosRankSum=0.550;SB=-1.258e+00 GT:AD:DP:GQ:PL 1/1:32,4:36:6:67,6,0 chrI 26127 . A G 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.368;DP=36;Dels=0.00;FS=3.680;HaplotypeScore=1.4679;MLEAC=2;MLEAF=1.00;MQ=10.98;MQ0=28;MQRankSum=2.017;QD=0.99;ReadPosRankSum=1.368;SB=1.27 GT:AD:DP:GQ:PL 1/1:32,4:36:6:67,6,0 chrI 26130 . G A 35.77 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.754;DP=35;Dels=0.00;FS=8.451;HaplotypeScore=3.6698;MLEAC=2;MLEAF=1.00;MQ=11.09;MQ0=28;MQRankSum=0.550;QD=1.02;ReadPosRankSum=0.937;SB=1.27 GT:AD:DP:GQ:PL 1/1:31,4:35:6:67,6,0 chrI 26331 . G A 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.626;DP=157;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=9.96;MQ0=98;MQRankSum=1.819;QD=1.03;ReadPosRankSum=-1.128;SB=-4.101e+01 GT:AD:DP:GQ:PL 0/1:124,33:157:99:192,0,457 chrI 26778 . C T 47.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=44;Dels=0.00;FS=6.021;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=7.17;MQ0=40;MQRankSum=0.727;QD=1.07;ReadPosRankSum=-0.727;SB=-2.253e+00 GT:AD:DP:GQ:PL 0/1:41,3:44:10:77,0,10 chrI 26793 . A G 47.22 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DP=51;Dels=0.00;FS=6.021;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=6.66;MQ0=47;MQRankSum=0.727;QD=0.93;ReadPosRankSum=-0.727;SB=-2.253e+00 GT:AD:DP:GQ:PL 0/1:47,3:51:10:77,0,10 chrI 26835 . G A 28.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DP=85;Dels=0.00;FS=7.782;HaplotypeScore=5.9899;MLEAC=1;MLEAF=0.500;MQ=7.52;MQ0=76;MQRankSum=1.422;QD=0.33;ReadPosRankSum=2.054;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:82,3:85:58:58,0,66 chrI 26838 . A G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.876;DP=87;Dels=0.00;FS=21.004;HaplotypeScore=9.9832;MLEAC=1;MLEAF=0.500;MQ=7.43;MQ0=78;MQRankSum=1.652;QD=0.30;ReadPosRankSum=2.219;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:82,5:87:56:56,0,66 chrI 26839 . A G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683;DP=88;Dels=0.00;FS=7.782;HaplotypeScore=9.9832;MLEAC=1;MLEAF=0.500;MQ=7.39;MQ0=79;MQRankSum=1.203;QD=0.30;ReadPosRankSum=1.422;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:85,3:88:56:56,0,66 chrI 26923 . C G 81.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.447;DP=45;Dels=0.00;FS=23.222;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.56;MQ0=35;MQRankSum=2.383;QD=1.80;ReadPosRankSum=-1.133;SB=-2.881e+00 GT:AD:DP:GQ:PL 0/1:39,6:45:44:111,0,44 chrI 26931 . A G 162.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.694;DP=52;Dels=0.00;FS=10.620;HaplotypeScore=6.6252;MLEAC=1;MLEAF=0.500;MQ=16.49;MQ0=33;MQRankSum=0.857;QD=3.12;ReadPosRankSum=0.939;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,10:52:99:192,0,168 chrI 26934 . G A 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157;DP=51;Dels=0.00;FS=2.754;HaplotypeScore=3.8118;MLEAC=1;MLEAF=0.500;MQ=16.65;MQ0=32;MQRankSum=1.157;QD=1.22;ReadPosRankSum=-2.453;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,5:51:92:92,0,269 chrI 26937 . G A 89.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.480;DP=54;Dels=0.00;FS=2.817;HaplotypeScore=10.4370;MLEAC=1;MLEAF=0.500;MQ=17.56;MQ0=32;MQRankSum=2.326;QD=1.65;ReadPosRankSum=-2.256;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,7:54:99:119,0,296 chrI 26940 . A G 118.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001;DP=53;Dels=0.02;FS=2.793;HaplotypeScore=10.4370;MLEAC=1;MLEAF=0.500;MQ=18.17;MQ0=30;MQRankSum=-0.161;QD=2.23;ReadPosRankSum=-1.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,8:52:99:148,0,293 chrI 26949 . G A 260.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.633;DP=59;Dels=0.00;FS=3.163;HaplotypeScore=4.8350;MLEAC=1;MLEAF=0.500;MQ=19.55;MQ0=30;MQRankSum=0.546;QD=4.41;ReadPosRankSum=1.462;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,14:59:99:290,0,248 chrI 26954 . A T 238.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DP=59;Dels=0.00;FS=3.114;HaplotypeScore=5.9899;MLEAC=1;MLEAF=0.500;MQ=20.26;MQ0=28;MQRankSum=0.734;QD=4.03;ReadPosRankSum=1.806;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,14:59:99:268,0,312 chrI 26958 . G T 241.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568;DP=61;Dels=0.00;FS=3.114;HaplotypeScore=4.9916;MLEAC=1;MLEAF=0.500;MQ=20.27;MQ0=29;MQRankSum=0.218;QD=3.95;ReadPosRankSum=1.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,14:61:99:271,0,280 chrI 26961 . A G 263.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;DP=60;Dels=0.00;FS=3.081;HaplotypeScore=7.8300;MLEAC=1;MLEAF=0.500;MQ=21.11;MQ0=26;MQRankSum=1.318;QD=4.38;ReadPosRankSum=1.214;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,15:60:99:293,0,367 chrI 26964 . A T 260.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.544;DP=63;Dels=0.00;FS=3.080;HaplotypeScore=11.5101;MLEAC=1;MLEAF=0.500;MQ=21.56;MQ0=26;MQRankSum=0.271;QD=4.13;ReadPosRankSum=1.512;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,16:63:99:290,0,400 chrI 26970 . G A,T 603.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.974;DP=63;Dels=0.00;FS=17.559;HaplotypeScore=8.5152;MLEAC=1,1;MLEAF=0.500,0.500;MQ=21.86;MQ0=25;MQRankSum=2.544;QD=9.57;ReadPosRankSum=0.271;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:28,19,16:63:99:663,286,290,334,0,350 chrI 26973 . A G 757 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-2.321;DP=62;Dels=0.00;FS=28.470;HaplotypeScore=13.0370;MLEAC=2;MLEAF=1.00;MQ=22.04;MQ0=24;MQRankSum=2.255;QD=12.21;ReadPosRankSum=0.948;SB=-6.525e-03 GT:AD:DP:GQ:PL 1/1:26,36:62:62:790,62,0 chrI 26974 . A G 300.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;DP=63;Dels=0.00;FS=3.123;HaplotypeScore=13.0370;MLEAC=1;MLEAF=0.500;MQ=22.17;MQ0=24;MQRankSum=-0.155;QD=4.76;ReadPosRankSum=-0.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,19:63:99:330,0,339 chrI 26979 . G A 284.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DP=61;Dels=0.00;FS=3.021;HaplotypeScore=10.1986;MLEAC=1;MLEAF=0.500;MQ=22.83;MQ0=21;MQRankSum=0.027;QD=4.66;ReadPosRankSum=0.684;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:44,17:61:99:314,0,423 chrI 26981 . T C 347.17 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.652;DP=60;Dels=0.00;FS=28.921;HaplotypeScore=9.2252;MLEAC=2;MLEAF=1.00;MQ=23.02;MQ0=20;MQRankSum=2.265;QD=5.79;ReadPosRankSum=1.831;SB=-1.765e-01 GT:AD:DP:GQ:PL 1/1:22,38:60:17:380,17,0 chrI 26983 . T G 345.17 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.375;DP=62;Dels=0.00;FS=40.278;HaplotypeScore=10.9586;MLEAC=2;MLEAF=1.00;MQ=22.68;MQ0=21;MQRankSum=2.829;QD=5.57;ReadPosRankSum=2.578;SB=-1.765e-01 GT:AD:DP:GQ:PL 1/1:24,38:62:17:378,17,0 chrI 26991 . C T 245.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809;DP=74;Dels=0.00;FS=2.932;HaplotypeScore=6.3300;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=22;MQRankSum=0.690;QD=3.31;ReadPosRankSum=-0.093;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,21:74:99:275,0,563 chrI 26994 . A G 272.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.734;DP=77;Dels=0.00;FS=2.941;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=23.74;MQ0=23;MQRankSum=0.871;QD=3.53;ReadPosRankSum=-0.132;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:55,22:77:99:302,0,590 chrI 26997 . T C 251.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336;DP=85;Dels=0.00;FS=2.748;HaplotypeScore=1.9966;MLEAC=1;MLEAF=0.500;MQ=23.94;MQ0=24;MQRankSum=-0.819;QD=2.95;ReadPosRankSum=0.894;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,23:85:99:281,0,792 chrI 27027 . A T 1527 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-0.346;DP=88;Dels=0.00;FS=18.129;HaplotypeScore=4.5966;MLEAC=2;MLEAF=1.00;MQ=24.50;MQ0=23;MQRankSum=1.679;QD=17.35;ReadPosRankSum=-1.732;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:24,64:88:99:1560,144,0 chrI 27031 . C T 926.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.529;DP=83;Dels=0.00;FS=6.917;HaplotypeScore=4.5966;MLEAC=1;MLEAF=0.500;MQ=23.99;MQ0=24;MQRankSum=1.045;QD=11.16;ReadPosRankSum=-2.250;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,47:83:99:956,0,139 chrI 27035 . T C 1244 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.257;DP=78;Dels=0.00;FS=17.324;HaplotypeScore=6.4616;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=24;MQRankSum=1.668;QD=15.95;ReadPosRankSum=-1.668;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:25,53:78:99:1277,117,0 chrI 27036 . G A 1245 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.412;DP=78;Dels=0.00;FS=17.324;HaplotypeScore=6.4616;MLEAC=2;MLEAF=1.00;MQ=23.63;MQ0=24;MQRankSum=1.668;QD=15.96;ReadPosRankSum=-1.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:25,53:78:99:1278,117,0 chrI 27044 . C T 1179 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.877;DP=78;Dels=0.00;FS=14.393;HaplotypeScore=4.5966;MLEAC=2;MLEAF=1.00;MQ=23.86;MQ0=23;MQRankSum=2.091;QD=15.12;ReadPosRankSum=-1.281;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:25,53:78:84:1212,84,0 chrI 27060 . A T 851 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.733;DP=68;Dels=0.00;FS=15.798;HaplotypeScore=9.7066;MLEAC=2;MLEAF=1.00;MQ=23.71;MQ0=21;MQRankSum=1.641;QD=12.51;ReadPosRankSum=0.091;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:21,37:68:81:884,81,0 chrI 27063 . G A 640.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.598;DP=66;Dels=0.00;FS=6.118;HaplotypeScore=8.5883;MLEAC=1;MLEAF=0.500;MQ=23.53;MQ0=21;MQRankSum=0.304;QD=9.70;ReadPosRankSum=0.806;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,35:66:99:670,0,107 chrI 27066 . G A 67.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.535;DP=66;Dels=0.00;FS=0.000;HaplotypeScore=9.4549;MLEAC=1;MLEAF=0.500;MQ=23.53;MQ0=21;MQRankSum=-0.096;QD=1.02;ReadPosRankSum=-0.833;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:56,10:66:97:97,0,728 chrI 27069 . G A 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=9.4549;MLEAC=1;MLEAF=0.500;MQ=23.44;MQ0=21;MQRankSum=1.187;QD=1.12;ReadPosRankSum=0.128;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,7:65:99:103,0,761 chrI 27072 . A G 661.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.462;DP=63;Dels=0.00;FS=6.232;HaplotypeScore=7.4600;MLEAC=1;MLEAF=0.500;MQ=23.24;MQ0=21;MQRankSum=0.812;QD=10.49;ReadPosRankSum=0.783;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:31,32:63:99:691,0,166 chrI 27075 . G A 663.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;DP=61;Dels=0.00;FS=6.585;HaplotypeScore=5.5950;MLEAC=1;MLEAF=0.500;MQ=23.33;MQ0=20;MQRankSum=1.559;QD=10.87;ReadPosRankSum=1.024;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:29,32:61:99:693,0,137 chrI 27080 . C T 613.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.345;DP=54;Dels=0.00;FS=5.315;HaplotypeScore=49.3646;MLEAC=1;MLEAF=0.500;MQ=22.71;MQ0=20;MQRankSum=-1.002;QD=11.35;ReadPosRankSum=3.307;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:30,24:54:99:643,0,175 chrI 27081 . G A,T 851.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.102;DP=54;Dels=0.00;FS=9.542;HaplotypeScore=4.8494;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.71;MQ0=20;MQRankSum=1.631;QD=15.76;ReadPosRankSum=1.631;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/2:21,25,8:54:99:911,211,142,700,0,679 chrI 27084 . G A 674.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.701;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=37.9254;MLEAC=1;MLEAF=0.500;MQ=23.35;MQ0=19;MQRankSum=0.062;QD=12.48;ReadPosRankSum=1.959;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:26,28:54:99:704,0,137 chrI 27090 . T C 360.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.095;DP=54;Dels=0.00;FS=9.739;HaplotypeScore=25.9481;MLEAC=1;MLEAF=0.500;MQ=23.14;MQ0=17;MQRankSum=-1.077;QD=6.67;ReadPosRankSum=0.444;SB=-8.701e+01 GT:AD:DP:GQ:PL 0/1:34,19:54:99:390,0,435 chrI 27093 . A T 187.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.752;DP=52;Dels=0.00;FS=8.470;HaplotypeScore=12.9736;MLEAC=1;MLEAF=0.500;MQ=23.23;MQ0=16;MQRankSum=1.606;QD=3.60;ReadPosRankSum=0.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,10:52:99:217,0,504 chrI 27096 . A G 153.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DP=47;Dels=0.00;FS=8.394;HaplotypeScore=3.9916;MLEAC=1;MLEAF=0.500;MQ=22.53;MQ0=16;MQRankSum=0.631;QD=3.26;ReadPosRankSum=0.283;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,10:47:99:183,0,506 chrI 27099 . T C 383.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.745;DP=46;Dels=0.00;FS=14.988;HaplotypeScore=0.9967;MLEAC=1;MLEAF=0.500;MQ=22.78;MQ0=15;MQRankSum=-0.339;QD=8.33;ReadPosRankSum=-0.248;SB=-2.870e+02 GT:AD:DP:GQ:PL 0/1:23,23:46:99:413,0,165 chrI 27105 . A G,T 593.01 SnpCluster;filter AC=1,1;AF=0.500,0.500;AN=2;DP=42;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1,1;MLEAF=0.500,0.500;MQ=22.98;MQ0=13;QD=14.12;SB=-3.540e+02 GT:AD:DP:GQ:PL 1/2:13,24,5:42:65:653,122,65,531,0,519 chrI 27126 . T C 936 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.527;DP=48;Dels=0.00;FS=11.161;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.25;MQ0=7;MQRankSum=-2.028;QD=19.50;ReadPosRankSum=2.228;SB=-4.600e+02 GT:AD:DP:GQ:PL 1/1:10,38:48:35:969,35,0 chrI 27129 . C G 1071 PASS AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.93;MQ0=2;QD=24.91;SB=-5.860e+02 GT:AD:DP:GQ:PL 1/1:2,41:43:99:1104,102,0 chrI 41475 . G T 3976.01 PASS AC=2;AF=1.00;AN=2;DP=122;Dels=0.00;FS=0.000;HaplotypeScore=2.6638;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=32.59;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,122:122:99:3976,322,0 chrI 141030 . T A 2005 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.54;MQ0=2;QD=31.83;SB=-6.501e+01 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2038,184,0 chrI 141135 . A T 2332 PASS AC=2;AF=1.00;AN=2;DP=78;Dels=0.00;FS=0.000;HaplotypeScore=2.5310;MLEAC=2;MLEAF=1.00;MQ=39.72;MQ0=3;QD=29.90;SB=-8.730e+02 GT:AD:DP:GQ:PL 1/1:0,77:78:99:2365,202,0 chrI 152125 . G T 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.746;DP=62;Dels=0.00;FS=61.858;HaplotypeScore=16.3157;MLEAC=1;MLEAF=0.500;MQ=59.25;MQ0=0;MQRankSum=0.048;QD=0.84;ReadPosRankSum=-2.407;SB=1.18 GT:AD:DP:GQ:PL 0/1:47,11:62:82:82,0,449 chrI 163774 . C G 335 filter AC=2;AF=1.00;AN=2;DP=11;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.45;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:11:33:368,33,0 chrI 188708 . A G 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.292;DP=93;Dels=0.00;FS=29.142;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=48.06;MQ0=0;MQRankSum=-2.962;QD=1.09;ReadPosRankSum=2.516;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:81,12:93:99:131,0,2434 chrI 188824 . A G 84.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.543;DP=127;Dels=0.00;FS=46.627;HaplotypeScore=1.5592;MLEAC=1;MLEAF=0.500;MQ=46.24;MQ0=4;MQRankSum=-1.286;QD=0.66;ReadPosRankSum=-1.506;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:106,21:127:99:114,0,3214 chrI 188881 . G C 1975.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575;DP=179;Dels=0.00;FS=11.896;HaplotypeScore=0.9995;MLEAC=1;MLEAF=0.500;MQ=46.79;MQ0=9;MQRankSum=-5.818;QD=11.03;ReadPosRankSum=-0.223;SB=-8.490e+02 GT:AD:DP:GQ:PL 0/1:95,84:179:99:2005,0,2846 chrI 188939 . A G 1971.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DP=160;Dels=0.00;FS=14.706;HaplotypeScore=1.8650;MLEAC=1;MLEAF=0.500;MQ=47.41;MQ0=5;MQRankSum=-5.221;QD=12.32;ReadPosRankSum=0.557;SB=-6.080e+02 GT:AD:DP:GQ:PL 0/1:82,78:160:99:2001,0,2475 chrI 189245 . A G 124.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.092;DP=76;Dels=0.00;FS=14.214;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=50.65;MQ0=0;MQRankSum=-4.911;QD=1.63;ReadPosRankSum=-0.315;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,14:76:99:154,0,2029 chrI 199811 . T G 3799.01 PASS AC=2;AF=1.00;AN=2;DP=105;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.18;SB=-1.194e+03 GT:AD:DP:GQ:PL 1/1:0,105:105:99:3799,301,0 chrI 205050 . C A 29.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=12;Dels=0.00;FS=0.000;HaplotypeScore=0.8321;MLEAC=2;MLEAF=1.00;MQ=13.38;MQ0=5;QD=2.48;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,11:12:6:61,6,0 chrI 205082 . A G 14.18 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327;DP=64;Dels=0.00;FS=16.406;HaplotypeScore=13.4741;MLEAC=1;MLEAF=0.500;MQ=8.94;MQ0=46;MQRankSum=1.115;QD=0.22;ReadPosRankSum=-1.540;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,4:64:44:44,0,84 chrI 205085 . C T 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.087;DP=66;Dels=0.00;FS=20.901;HaplotypeScore=6.8636;MLEAC=1;MLEAF=0.500;MQ=9.07;MQ0=46;MQRankSum=1.047;QD=0.50;ReadPosRankSum=-1.658;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:61,5:66:63:63,0,81 chrI 205091 . A G 33.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DP=72;Dels=0.00;FS=22.082;HaplotypeScore=14.7006;MLEAC=1;MLEAF=0.500;MQ=8.75;MQ0=51;MQRankSum=1.032;QD=0.46;ReadPosRankSum=-0.950;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,5:72:63:63,0,81 chrI 205097 . C T 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.605;DP=77;Dels=0.00;FS=67.160;HaplotypeScore=11.6496;MLEAC=1;MLEAF=0.500;MQ=10.05;MQ0=52;MQRankSum=2.910;QD=0.99;ReadPosRankSum=-0.734;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:64,13:77:37:106,0,37 chrI 205100 . C T 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.521;DP=77;Dels=0.00;FS=63.973;HaplotypeScore=7.7716;MLEAC=1;MLEAF=0.500;MQ=9.98;MQ0=53;MQRankSum=2.781;QD=0.99;ReadPosRankSum=-0.753;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:64,13:77:37:106,0,37 chrI 205101 . G A 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.934;DP=78;Dels=0.00;FS=50.171;HaplotypeScore=7.7716;MLEAC=1;MLEAF=0.500;MQ=9.92;MQ0=54;MQRankSum=2.685;QD=0.69;ReadPosRankSum=-0.491;SB=-2.684e+00 GT:AD:DP:GQ:PL 0/1:66,12:78:59:84,0,59 chrI 205106 . C T 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.894;DP=83;Dels=0.00;FS=73.319;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=10.28;MQ0=55;MQRankSum=2.917;QD=0.92;ReadPosRankSum=-0.659;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:66,17:83:37:106,0,37 chrI 205109 . T C 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.697;DP=86;Dels=0.00;FS=66.012;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=10.82;MQ0=57;MQRankSum=2.390;QD=0.63;ReadPosRankSum=-0.022;SB=-2.974e+00 GT:AD:DP:GQ:PL 0/1:70,16:86:59:84,0,59 chrI 205119 . T G 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629;DP=84;Dels=0.00;FS=73.017;HaplotypeScore=3.9185;MLEAC=1;MLEAF=0.500;MQ=12.02;MQ0=54;MQRankSum=2.042;QD=1.05;ReadPosRankSum=-0.115;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:64,19:84:37:118,0,37 chrI 205121 . G A 107.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958;DP=85;Dels=0.00;FS=74.778;HaplotypeScore=3.9185;MLEAC=1;MLEAF=0.500;MQ=11.95;MQ0=55;MQRankSum=2.090;QD=1.26;ReadPosRankSum=-0.374;SB=-3.018e+00 GT:AD:DP:GQ:PL 0/1:64,21:85:34:137,0,34 chrI 205130 . T C 85.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.457;DP=86;Dels=0.00;FS=66.055;HaplotypeScore=3.8936;MLEAC=1;MLEAF=0.500;MQ=11.99;MQ0=55;MQRankSum=1.672;QD=0.99;ReadPosRankSum=0.227;SB=-3.011e+00 GT:AD:DP:GQ:PL 0/1:66,20:86:56:115,0,56 chrI 205145 . C T 152.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.413;DP=86;Dels=0.00;FS=65.271;HaplotypeScore=3.9185;MLEAC=2;MLEAF=1.00;MQ=11.98;MQ0=54;MQRankSum=2.826;QD=1.77;ReadPosRankSum=0.137;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:61,25:86:24:185,24,0 chrI 205146 . A G 152.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.137;DP=86;Dels=0.00;FS=65.271;HaplotypeScore=3.9185;MLEAC=2;MLEAF=1.00;MQ=11.98;MQ0=54;MQRankSum=2.826;QD=1.77;ReadPosRankSum=0.274;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:61,25:86:24:185,24,0 chrI 205150 . G A 152.03 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=2.275;DP=84;Dels=0.00;FS=58.670;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=12.12;MQ0=53;MQRankSum=2.475;QD=1.81;ReadPosRankSum=-0.375;SB=-4.095e-02 GT:AD:DP:GQ:PL 1/1:59,25:84:24:185,24,0 chrI 205163 . A T 97.13 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.025;DP=67;Dels=0.00;FS=58.670;HaplotypeScore=3.9434;MLEAC=2;MLEAF=1.00;MQ=13.57;MQ0=36;MQRankSum=2.475;QD=1.45;ReadPosRankSum=1.025;SB=-1.420e-01 GT:AD:DP:GQ:PL 1/1:42,25:67:18:130,18,0 chrI 205184 . A G 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440;DP=45;Dels=0.00;FS=7.014;HaplotypeScore=5.4428;MLEAC=1;MLEAF=0.500;MQ=18.47;MQ0=12;MQRankSum=-0.488;QD=1.24;ReadPosRankSum=0.524;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:27,18:45:74:86,0,74 chrI 205187 . T C 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;DP=43;Dels=0.00;FS=3.590;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=18.84;MQ0=11;MQRankSum=-0.627;QD=1.30;ReadPosRankSum=-0.361;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:25,18:43:74:86,0,74 chrI 205190 . G A 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.631;DP=38;Dels=0.00;FS=0.000;HaplotypeScore=4.9452;MLEAC=1;MLEAF=0.500;MQ=18.50;MQ0=10;MQRankSum=-1.218;QD=1.47;ReadPosRankSum=0.850;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:24,14:38:74:86,0,74 chrI 205198 . A C 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DP=30;Dels=0.00;FS=13.802;HaplotypeScore=3.9718;MLEAC=2;MLEAF=1.00;MQ=19.93;MQ0=6;MQRankSum=-1.734;QD=2.58;ReadPosRankSum=1.589;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:7,23:30:12:110,12,0 chrI 205200 . A G 77.51 SnpCluster;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DP=29;Dels=0.00;FS=13.802;HaplotypeScore=3.9718;MLEAC=2;MLEAF=1.00;MQ=20.27;MQ0=5;MQRankSum=-1.734;QD=2.67;ReadPosRankSum=1.589;SB=-5.225e-01 GT:AD:DP:GQ:PL 1/1:6,23:29:12:110,12,0 chrI 205202 . C T 54.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=4.9444;MLEAC=1;MLEAF=0.500;MQ=20.97;MQ0=4;MQRankSum=-0.794;QD=1.86;ReadPosRankSum=1.834;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:18,11:29:74:84,0,74 chrI 205208 . T C 176.03 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=2;MLEAF=1.00;MQ=17.48;MQ0=10;QD=5.50;SB=-4.069e-02 GT:AD:DP:GQ:PL 1/1:10,22:32:24:209,24,0 chrI 205211 . C A 56.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=17.76;MQ0=9;MQRankSum=-0.528;QD=1.81;ReadPosRankSum=1.232;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:19,11:31:56:86,0,56 chrI 205217 . A G 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=5.8404;MLEAC=1;MLEAF=0.500;MQ=16.98;MQ0=10;MQRankSum=0.869;QD=0.94;ReadPosRankSum=-0.794;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:18,10:31:59:59,0,59 chrI 205220 . C T 47.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.380;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.8670;MLEAC=1;MLEAF=0.500;MQ=16.76;MQ0=11;MQRankSum=0.304;QD=1.52;ReadPosRankSum=-1.064;SB=-6.525e-03 GT:AD:DP:GQ:PL 0/1:18,13:31:56:77,0,56 chrI 205223 . T A 29.01 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=4.8670;MLEAC=1;MLEAF=0.500;MQ=16.76;MQ0=11;MQRankSum=-0.367;QD=0.94;ReadPosRankSum=0.694;SB=-6.522e-03 GT:AD:DP:GQ:PL 0/1:20,9:31:59:59,0,59 chrI 205226 . A G 26.02 LowQual;SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.794;DP=32;Dels=0.00;FS=0.000;HaplotypeScore=10.6762;MLEAC=1;MLEAF=0.500;MQ=16.50;MQ0=12;MQRankSum=0.643;QD=0.81;ReadPosRankSum=0.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:22,10:32:56:56,0,77 chrI 205232 . C T 104.46 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=12.5919;MLEAC=1;MLEAF=0.500;MQ=16.82;MQ0=11;MQRankSum=0.091;QD=3.48;ReadPosRankSum=0.822;SB=-4.383e+00 GT:AD:DP:GQ:PL 0/1:12,18:30:1:133,0,1 chrI 205235 . C T 120.14 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=15.4810;MLEAC=1;MLEAF=0.500;MQ=16.28;MQ0=11;QD=4.29;SB=0.850 GT:AD:DP:GQ:PL 1/1:11,16:28:18:153,18,0 chrI 205236 . G A 81.02 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.739;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=15.4810;MLEAC=1;MLEAF=0.500;MQ=16.28;MQ0=11;MQRankSum=2.161;QD=2.89;ReadPosRankSum=1.318;SB=-1.475e-02 GT:AD:DP:GQ:PL 0/1:16,12:28:22:111,0,22 chrI 205241 . C T 84.79 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=2.9202;MLEAC=1;MLEAF=0.500;MQ=15.96;MQ0=12;MQRankSum=1.880;QD=3.03;ReadPosRankSum=0.788;SB=-3.819e-01 GT:AD:DP:GQ:PL 0/1:16,12:28:4:114,0,4 chrI 205244 . T C 84.79 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.758;DP=28;Dels=0.00;FS=0.000;HaplotypeScore=1.9468;MLEAC=1;MLEAF=0.500;MQ=15.96;MQ0=12;MQRankSum=1.395;QD=3.03;ReadPosRankSum=0.788;SB=-3.819e-01 GT:AD:DP:GQ:PL 0/1:16,12:28:4:114,0,4 chrI 205254 . T G 44.97 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.21;MQ0=12;QD=1.96;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:12,8:23:9:77,9,0 chrI 205256 . G A 44.97 filter AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.21;MQ0=12;QD=1.96;SB=-9.474e-01 GT:AD:DP:GQ:PL 1/1:12,11:23:9:77,9,0 chrI 205265 . T C 44.97 filter AC=2;AF=1.00;AN=2;DP=21;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.02;MQ0=12;QD=2.14;SB=-9.134e-01 GT:AD:DP:GQ:PL 1/1:12,9:21:9:77,9,0 chrI 205685 . C T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.681;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=4.8798;MLEAC=1;MLEAF=0.500;MQ=19.37;MQ0=51;MQRankSum=-2.319;QD=0.23;ReadPosRankSum=-1.929;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,9:88:50:50,0,807 chrI 205700 . T C 17.09 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.775;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=3.5235;MLEAC=1;MLEAF=0.500;MQ=18.75;MQ0=50;MQRankSum=1.310;QD=0.20;ReadPosRankSum=0.080;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:73,11:84:47:47,0,705 chrI 205811 . C T 751.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DP=160;Dels=0.00;FS=88.892;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=26.31;MQ0=39;MQRankSum=-4.485;QD=4.69;ReadPosRankSum=-4.113;SB=-5.001e+01 GT:AD:DP:GQ:PL 0/1:99,61:160:99:781,0,1752 chrI 205829 . T C 870.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.435;DP=165;Dels=0.00;FS=72.789;HaplotypeScore=0.9867;MLEAC=1;MLEAF=0.500;MQ=28.04;MQ0=33;MQRankSum=-5.444;QD=5.27;ReadPosRankSum=1.548;SB=-7.201e+01 GT:AD:DP:GQ:PL 0/1:100,65:165:99:900,0,1937 chrI 205835 . C T 895.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.950;DP=154;Dels=0.00;FS=53.982;HaplotypeScore=1.9800;MLEAC=1;MLEAF=0.500;MQ=28.05;MQ0=32;MQRankSum=-5.409;QD=5.81;ReadPosRankSum=3.094;SB=-9.701e+01 GT:AD:DP:GQ:PL 0/1:90,64:154:99:925,0,1668 chrI 205883 . T C 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.846;DP=133;Dels=0.00;FS=56.787;HaplotypeScore=13.6692;MLEAC=1;MLEAF=0.500;MQ=36.68;MQ0=6;MQRankSum=1.251;QD=0.18;ReadPosRankSum=1.951;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:119,14:133:54:54,0,3100 chrI 205886 . T C 821.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.541;DP=137;Dels=0.00;FS=52.775;HaplotypeScore=13.6692;MLEAC=1;MLEAF=0.500;MQ=37.52;MQ0=3;MQRankSum=-6.541;QD=5.99;ReadPosRankSum=-2.215;SB=-5.101e+01 GT:AD:DP:GQ:PL 0/1:89,48:137:99:851,0,2526 chrI 205901 . A G 48.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.947;DP=119;Dels=0.00;FS=47.873;HaplotypeScore=25.3487;MLEAC=1;MLEAF=0.500;MQ=39.83;MQ0=0;MQRankSum=-7.133;QD=0.40;ReadPosRankSum=-4.680;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:94,25:119:78:78,0,2903 chrI 205911 . A G 61.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DP=113;Dels=0.00;FS=46.743;HaplotypeScore=15.5510;MLEAC=1;MLEAF=0.500;MQ=43.26;MQ0=0;MQRankSum=0.248;QD=0.54;ReadPosRankSum=4.231;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,14:113:91:91,0,2877 chrI 205913 . T C 212.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.318;DP=111;Dels=0.00;FS=16.080;HaplotypeScore=8.6899;MLEAC=1;MLEAF=0.500;MQ=43.42;MQ0=0;MQRankSum=-1.761;QD=1.91;ReadPosRankSum=1.991;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,20:111:99:242,0,2668 chrI 205916 . T C 59.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.511;DP=114;Dels=0.00;FS=43.078;HaplotypeScore=7.7234;MLEAC=1;MLEAF=0.500;MQ=43.44;MQ0=0;MQRankSum=0.091;QD=0.52;ReadPosRankSum=3.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:100,14:114:89:89,0,2809 chrI 205919 . A T 62.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.879;DP=109;Dels=0.00;FS=41.468;HaplotypeScore=6.7276;MLEAC=1;MLEAF=0.500;MQ=43.88;MQ0=0;MQRankSum=0.177;QD=0.57;ReadPosRankSum=2.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:95,14:109:92:92,0,2748 chrI 206126 . T C 853 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=29.41;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:84:886,84,0 chrI 206129 . A C 823 SnpCluster AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.49;MQ0=0;QD=28.38;SB=-2.070e+02 GT:AD:DP:GQ:PL 1/1:0,29:29:81:856,81,0 chrI 206132 . G T 655 SnpCluster AC=2;AF=1.00;AN=2;DP=23;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=43.09;MQ0=0;QD=28.48;SB=-1.000e+02 GT:AD:DP:GQ:PL 1/1:0,23:23:66:688,66,0 chrI 206144 . C T 597 PASS AC=2;AF=1.00;AN=2;DP=30;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=38.76;MQ0=0;QD=19.90;SB=-1.250e+02 GT:AD:DP:GQ:PL 1/1:0,30:30:63:630,63,0 chrI 206351 . T C 55.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.382;DP=133;Dels=0.00;FS=42.951;HaplotypeScore=6.2858;MLEAC=1;MLEAF=0.500;MQ=49.99;MQ0=4;MQRankSum=-4.449;QD=0.41;ReadPosRankSum=-3.187;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:110,23:133:85:85,0,2967 chrI 206354 . G T 78.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.708;DP=129;Dels=0.00;FS=38.659;HaplotypeScore=6.2858;MLEAC=1;MLEAF=0.500;MQ=49.82;MQ0=4;MQRankSum=-4.460;QD=0.60;ReadPosRankSum=-3.045;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:105,23:129:99:108,0,2877 chrI 206375 . C T 481.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.906;DP=133;Dels=0.00;FS=8.785;HaplotypeScore=1.7845;MLEAC=1;MLEAF=0.500;MQ=49.65;MQ0=4;MQRankSum=-2.735;QD=3.62;ReadPosRankSum=-0.436;SB=-9.901e+01 GT:AD:DP:GQ:PL 0/1:95,37:133:99:511,0,2543 chrI 206462 . T C 72.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.201;DP=132;Dels=0.00;FS=2.251;HaplotypeScore=1.7719;MLEAC=1;MLEAF=0.500;MQ=48.05;MQ0=17;MQRankSum=-0.729;QD=0.55;ReadPosRankSum=-2.754;SB=-7.601e+01 GT:AD:DP:GQ:PL 0/1:101,31:132:99:102,0,2611 chrI 210818 . A T 3084 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=46.54;MQ0=8;QD=30.24;SB=-8.400e+02 GT:AD:DP:GQ:PL 1/1:0,102:102:99:3117,265,0 chrI 211019 . T C 2635 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.9933;MLEAC=2;MLEAF=1.00;MQ=45.60;MQ0=0;QD=31.37;SB=-1.176e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2668,241,0 chrII 1254 . T C 96.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014;DP=91;Dels=0.00;FS=9.736;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.23;MQ0=48;MQRankSum=1.389;QD=1.06;ReadPosRankSum=-1.295;SB=-1.601e+01 GT:AD:DP:GQ:PL 0/1:83,8:91:99:126,0,465 chrII 1372 . G C 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DP=52;Dels=0.00;FS=17.312;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=20.87;MQ0=2;MQRankSum=1.757;QD=0.31;ReadPosRankSum=0.409;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,5:52:46:46,0,465 chrII 1528 . G A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DP=94;Dels=0.00;FS=1.780;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=17.82;MQ0=47;MQRankSum=0.583;QD=0.15;ReadPosRankSum=1.121;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:85,9:94:44:44,0,866 chrII 2117 . G A 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DP=81;Dels=0.00;FS=0.000;HaplotypeScore=0.7887;MLEAC=2;MLEAF=1.00;MQ=5.58;MQ0=54;MQRankSum=2.739;QD=0.27;ReadPosRankSum=2.045;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:78,3:81:6:53,6,0 chrII 2159 . T C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=-1.337;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=6.06;MQ0=44;MQRankSum=2.748;QD=0.30;ReadPosRankSum=-2.525;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:69,3:72:6:53,6,0 chrII 2164 . G C 21.79 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.046;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.98;MQ0=46;MQRankSum=2.268;QD=0.30;ReadPosRankSum=-1.991;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:70,2:73:6:53,6,0 chrII 2354 . A G 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=17.81;MQ0=62;MQRankSum=-2.142;QD=0.53;ReadPosRankSum=-0.547;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,7:94:80:80,0,686 chrII 5983 . C G 2024 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.16;MQ0=0;QD=33.73;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2057,153,0 chrII 6440 . G C 1603 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.79;MQ0=5;QD=26.72;SB=-8.330e+02 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1636,144,0 chrII 7510 . G A 963 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.70;MQ0=4;QD=21.89;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,44:44:90:996,90,0 chrII 7511 . G A 963 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.03;MQ0=4;QD=22.40;SB=-9.501e+01 GT:AD:DP:GQ:PL 1/1:0,43:43:90:996,90,0 chrII 15101 . T G 2526 PASS AC=2;AF=1.00;AN=2;DP=68;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.15;SB=-1.143e+03 GT:AD:DP:GQ:PL 1/1:0,68:68:99:2559,196,0 chrII 15510 . G T 1702 PASS AC=2;AF=1.00;AN=2;DP=53;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.13;MQ0=0;QD=32.11;SB=-7.630e+02 GT:AD:DP:GQ:PL 1/1:0,53:53:99:1735,138,0 chrII 15518 . A G 2210 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.31;MQ0=0;QD=32.99;SB=-1.162e+03 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2243,175,0 chrII 16380 . C T 3391.01 PASS AC=2;AF=1.00;AN=2;DP=99;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.25;SB=-1.553e+03 GT:AD:DP:GQ:PL 1/1:0,99:99:99:3391,256,0 chrII 16392 . A G 3438.01 PASS AC=2;AF=1.00;AN=2;DP=101;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.04;SB=-1.483e+03 GT:AD:DP:GQ:PL 1/1:0,101:101:99:3438,265,0 chrII 30012 . C T 999 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.98;MQ0=0;QD=15.37;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1032,111,0 chrII 30050 . A G 709 filter AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.59;MQ0=14;QD=9.99;SB=-3.490e+02 GT:AD:DP:GQ:PL 1/1:3,68:71:78:742,78,0 chrII 30210 . T C 92.51 filter AC=2;AF=1.00;AN=2;DP=20;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=13.06;MQ0=10;QD=4.63;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,20:20:12:125,12,0 chrII 30723 . G A 67.97 filter AC=2;AF=1.00;AN=2;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.17;MQ0=24;QD=2.34;SB=-4.657e-01 GT:AD:DP:GQ:PL 1/1:23,6:29:9:100,9,0 chrII 30754 . G A 35.77 filter AC=2;AF=1.00;AN=2;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=9.18;MQ0=24;QD=1.15;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:22,9:31:6:67,6,0 chrII 30848 . C G 268 filter AC=2;AF=1.00;AN=2;DP=37;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.77;MQ0=22;QD=7.24;SB=-1.299e+02 GT:AD:DP:GQ:PL 1/1:19,18:37:33:301,33,0 chrII 35485 . C T 703 filter AC=2;AF=1.00;AN=2;DP=44;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=21.43;MQ0=12;QD=15.98;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,44:44:66:736,66,0 chrII 59755 . T C 2328 PASS AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=1.9312;MLEAC=2;MLEAF=1.00;MQ=59.63;MQ0=0;QD=36.95;SB=-1.160e+03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:2361,178,0 chrII 130387 . C G 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.579;DP=52;Dels=0.00;FS=51.512;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.66;MQ0=0;MQRankSum=-0.931;QD=0.39;ReadPosRankSum=-3.666;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,15:52:50:50,0,1125 chrII 259764 . C T 1466 filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.659;DP=48;Dels=0.00;FS=16.721;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.29;MQ0=1;MQRankSum=1.659;QD=30.54;ReadPosRankSum=-0.111;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,47:48:99:1499,135,0 chrII 263153 . C T 40.76 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=27.61;MQ0=0;QD=8.15;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,5:5:6:72,6,0 chrII 265382 . G T 769 filter AC=2;AF=1.00;AN=2;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.76;SB=-6.520e-03 GT:AD:DP:GQ:PL 1/1:0,25:25:72:802,72,0 chrII 415782 . C T 238.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.218;DP=66;Dels=0.02;FS=177.989;HaplotypeScore=7.9781;MLEAC=1;MLEAF=0.500;MQ=59.36;MQ0=0;MQRankSum=0.062;QD=3.61;ReadPosRankSum=-3.797;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,30:65:99:268,0,790 chrII 474219 . T C 80.51 PASS AC=2;AF=1.00;AN=2;DP=41;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.09;MQ0=0;QD=1.96;SB=-1.895e+02 GT:AD:DP:GQ:PL 1/1:0,41:41:12:113,12,0 chrII 474225 . C A 488 PASS AC=2;AF=1.00;AN=2;DP=51;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=31.56;MQ0=0;QD=9.57;SB=-5.610e+02 GT:AD:DP:GQ:PL 1/1:0,51:51:45:521,45,0 chrII 474544 . A G 3850.01 PASS AC=2;AF=1.00;AN=2;DP=109;Dels=0.00;FS=0.000;HaplotypeScore=1.6385;MLEAC=2;MLEAF=1.00;MQ=53.49;MQ0=0;QD=35.32;SB=-2.018e+03 GT:AD:DP:GQ:PL 1/1:0,109:109:99:3850,307,0 chrII 474920 . T C 3695.01 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=1.7860;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=34.86;SB=-1.345e+03 GT:AD:DP:GQ:PL 1/1:0,106:106:99:3695,286,0 chrII 593778 . G T 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.271;DP=67;Dels=0.00;FS=57.403;HaplotypeScore=1.1567;MLEAC=1;MLEAF=0.500;MQ=57.97;MQ0=0;MQRankSum=-1.335;QD=0.42;ReadPosRankSum=-2.829;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,13:67:58:58,0,1698 chrII 813161 . T G 38.97 filter AC=2;AF=1.00;AN=2;DP=5;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.66;MQ0=2;QD=7.79;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:1,4:5:9:71,9,0 chrIII 274 . A C 35.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.850;DP=29;Dels=0.00;FS=0.000;HaplotypeScore=43.2116;MLEAC=1;MLEAF=0.500;MQ=31.52;MQ0=3;MQRankSum=-0.289;QD=1.21;ReadPosRankSum=1.676;SB=-4.901e+01 GT:AD:DP:GQ:PL 0/1:22,7:29:43:65,0,43 chrIII 42038 . G A 240.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.840;DP=66;Dels=0.02;FS=125.316;HaplotypeScore=21.4274;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=-1.052;QD=3.64;ReadPosRankSum=-6.028;SB=-4.732e-01 GT:AD:DP:GQ:PL 0/1:39,26:65:99:270,0,357 chrIII 44573 . T A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.364;DP=71;Dels=0.00;FS=85.296;HaplotypeScore=7.6514;MLEAC=1;MLEAF=0.500;MQ=57.89;MQ0=0;MQRankSum=0.510;QD=0.37;ReadPosRankSum=-2.981;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:62,9:71:56:56,0,404 chrIII 57071 . C A 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.391;DP=74;Dels=0.00;FS=4.976;HaplotypeScore=5.5478;MLEAC=1;MLEAF=0.500;MQ=59.38;MQ0=0;MQRankSum=0.404;QD=0.38;ReadPosRankSum=-2.178;SB=-1.210e+02 GT:AD:DP:GQ:PL 0/1:42,32:74:58:58,0,470 chrIII 57085 . C A 63.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.991;DP=52;Dels=0.02;FS=69.383;HaplotypeScore=15.3298;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=0;MQRankSum=-0.798;QD=1.21;ReadPosRankSum=-4.523;SB=-6.502e-03 GT:AD:DP:GQ:PL 0/1:41,10:51:93:93,0,106 chrIII 57239 . C A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317;DP=31;Dels=0.00;FS=26.298;HaplotypeScore=2.1562;MLEAC=1;MLEAF=0.500;MQ=58.50;MQ0=0;MQRankSum=0.276;QD=0.84;ReadPosRankSum=-2.603;SB=-6.506e-03 GT:AD:DP:GQ:PL 0/1:21,10:31:56:56,0,188 chrIII 84421 . G A 23.78 LowQual;filter AC=2;AF=1.00;AN=2;BaseQRankSum=1.648;DP=88;Dels=0.00;FS=74.832;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=5.29;MQ0=60;MQRankSum=-0.348;QD=0.27;ReadPosRankSum=-2.205;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:72,16:88:6:55,6,0 chrIII 84780 . A T 706 PASS AC=2;AF=1.00;AN=2;DP=24;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=40.48;MQ0=0;QD=29.42;SB=-1.860e+02 GT:AD:DP:GQ:PL 1/1:0,24:24:60:739,60,0 chrIII 143131 . T C 2107 PASS AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.77;MQ0=0;QD=35.71;SB=-1.115e+03 GT:AD:DP:GQ:PL 1/1:0,59:59:99:2140,168,0 chrIII 148615 . C T 1304 filter AC=2;AF=1.00;AN=2;DP=43;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.33;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,43:43:99:1337,120,0 chrIII 151628 . A T 35.77 filter AC=2;AF=1.00;AN=2;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.21;MQ0=6;QD=2.75;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:6,7:13:6:67,6,0 chrIII 151645 . G A 33.77 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=7;QD=2.41;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:7,7:14:6:65,6,0 chrIII 151646 . T C 33.77 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.66;MQ0=7;QD=2.41;SB=-7.990e-01 GT:AD:DP:GQ:PL 1/1:7,7:14:6:65,6,0 chrIII 151787 . A C 325.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291;DP=86;Dels=0.00;FS=17.530;HaplotypeScore=2.7086;MLEAC=1;MLEAF=0.500;MQ=49.44;MQ0=0;MQRankSum=-5.330;QD=3.78;ReadPosRankSum=0.187;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,19:86:99:355,0,2143 chrIII 151809 . T C 276.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639;DP=90;Dels=0.00;FS=11.961;HaplotypeScore=1.9830;MLEAC=1;MLEAF=0.500;MQ=51.99;MQ0=0;MQRankSum=-6.057;QD=3.07;ReadPosRankSum=-2.870;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:72,18:90:99:306,0,2492 chrIII 151826 . C T 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=4.270;DP=90;Dels=0.00;FS=6.837;HaplotypeScore=1.9985;MLEAC=1;MLEAF=0.500;MQ=53.91;MQ0=0;MQRankSum=-5.119;QD=1.62;ReadPosRankSum=-5.509;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,13:90:99:176,0,2642 chrIII 162361 . T C 3117 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.55;SB=-5.420e+02 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3150,238,0 chrIII 162396 . G C 2136 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.60;MQ0=0;QD=36.83;SB=-9.280e+02 GT:AD:DP:GQ:PL 1/1:0,58:58:99:2169,166,0 chrIII 162640 . T G 2438 PASS AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.39;SB=-8.070e+02 GT:AD:DP:GQ:PL 1/1:0,67:67:99:2471,193,0 chrIII 162694 . G A 2031 PASS AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.38;MQ0=0;QD=33.85;SB=-1.089e+03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:2064,156,0 chrIII 163059 . T C 2523 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.56;SB=-1.109e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2556,193,0 chrIII 199081 . G A 822 filter AC=2;AF=1.00;AN=2;BaseQRankSum=0.083;DP=97;Dels=0.00;FS=3.445;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=18.10;MQ0=55;MQRankSum=-1.403;QD=8.47;ReadPosRankSum=0.908;SB=-4.410e+02 GT:AD:DP:GQ:PL 1/1:29,68:97:46:855,46,0 chrIII 231031 . C T 29.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.103;DP=112;Dels=0.00;FS=211.910;HaplotypeScore=21.4715;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.220;QD=0.26;ReadPosRankSum=-5.255;SB=1.75 GT:AD:DP:GQ:PL 0/1:84,28:112:59:59,0,899 chrIII 277564 . G T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.881;DP=72;Dels=0.00;FS=70.717;HaplotypeScore=6.1391;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=0;MQRankSum=0.683;QD=0.56;ReadPosRankSum=-5.332;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:57,15:72:70:70,0,1668 chrIV 13937 . G A 190.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.155;DP=75;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=12.05;MQ0=52;MQRankSum=1.209;QD=2.53;ReadPosRankSum=-0.899;SB=-2.201e+01 GT:AD:DP:GQ:PL 0/1:33,42:75:94:220,0,94 chrIV 43901 . G A 47.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.978;DP=60;Dels=0.02;FS=146.999;HaplotypeScore=13.0203;MLEAC=1;MLEAF=0.500;MQ=58.28;MQ0=0;MQRankSum=0.423;QD=0.78;ReadPosRankSum=-5.994;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:28,31:59:77:77,0,197 chrIV 169939 . G A 353.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-3.986;DP=59;Dels=0.02;FS=63.005;HaplotypeScore=45.7760;MLEAC=1;MLEAF=0.500;MQ=55.42;MQ0=1;MQRankSum=-0.329;QD=5.98;ReadPosRankSum=-3.471;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:13,45:58:99:383,0,169 chrIV 169943 . G A 148.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.987;DP=29;Dels=0.00;FS=46.932;HaplotypeScore=13.7078;MLEAC=1;MLEAF=0.500;MQ=51.46;MQ0=0;MQRankSum=-1.682;QD=5.10;ReadPosRankSum=-2.084;SB=-2.750e+00 GT:AD:DP:GQ:PL 0/1:10,19:29:99:178,0,270 chrIV 169954 . G A 32.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150;DP=21;Dels=0.00;FS=36.553;HaplotypeScore=6.3760;MLEAC=1;MLEAF=0.500;MQ=51.77;MQ0=0;MQRankSum=-3.223;QD=1.52;ReadPosRankSum=-2.643;SB=0.325 GT:AD:DP:GQ:PL 0/1:13,8:21:62:62,0,391 chrIV 369290 . G A 97.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.909;DP=109;Dels=0.04;FS=280.895;HaplotypeScore=21.7259;MLEAC=1;MLEAF=0.500;MQ=56.34;MQ0=0;MQRankSum=3.136;QD=0.89;ReadPosRankSum=-6.457;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:56,48:105:99:127,0,818 chrIV 369294 . G A 14.18 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.222;DP=111;Dels=0.00;FS=294.061;HaplotypeScore=22.3043;MLEAC=1;MLEAF=0.500;MQ=56.59;MQ0=0;MQRankSum=3.432;QD=0.13;ReadPosRankSum=-5.862;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:65,46:111:44:44,0,1096 chrIV 607060 . G A 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.581;DP=133;Dels=0.01;FS=155.646;HaplotypeScore=17.2952;MLEAC=1;MLEAF=0.500;MQ=58.84;MQ0=0;MQRankSum=-0.929;QD=0.77;ReadPosRankSum=-4.754;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:77,55:132:99:133,0,360 chrIV 655316 . A T 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.212;DP=58;Dels=0.00;FS=88.093;HaplotypeScore=18.5530;MLEAC=1;MLEAF=0.500;MQ=55.47;MQ0=0;MQRankSum=-1.220;QD=2.95;ReadPosRankSum=-0.234;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:34,24:58:99:201,0,981 chrIV 757631 . G C 943 filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=25.24;MQ0=5;QD=23.57;SB=-4.330e+02 GT:AD:DP:GQ:PL 1/1:0,40:40:90:976,90,0 chrIV 758310 . T C 827 filter AC=2;AF=1.00;AN=2;DP=49;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.12;MQ0=9;QD=16.88;SB=-2.880e+02 GT:AD:DP:GQ:PL 1/1:0,49:49:87:860,87,0 chrIV 769328 . G A 1568 PASS AC=2;AF=1.00;AN=2;DP=54;Dels=0.00;FS=0.000;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=29.04;SB=-8.690e+02 GT:AD:DP:GQ:PL 1/1:0,54:54:99:1601,132,0 chrIV 783598 . G A 3039 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.61;SB=-1.561e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3072,226,0 chrIV 864219 . A G 2580 PASS AC=2;AF=1.00;AN=2;DP=69;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.39;SB=-1.185e+03 GT:AD:DP:GQ:PL 1/1:0,69:69:99:2613,199,0 chrIV 928579 . C G 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.379;DP=74;Dels=0.00;FS=140.144;HaplotypeScore=0.9332;MLEAC=1;MLEAF=0.500;MQ=58.68;MQ0=0;MQRankSum=-0.398;QD=1.11;ReadPosRankSum=-5.201;SB=0.015 GT:AD:DP:GQ:PL 0/1:56,18:74:99:112,0,1667 chrIV 987244 . G A 389 filter AC=2;AF=1.00;AN=2;DP=62;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=14.34;MQ0=38;QD=6.27;SB=-6.700e+01 GT:AD:DP:GQ:PL 1/1:26,36:62:39:422,39,0 chrIV 1160352 . C T 41.76 filter AC=2;AF=1.00;AN=2;DP=102;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=4.58;MQ0=100;QD=0.41;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:48,54:102:6:73,6,0 chrIV 1253397 . T C 3058 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.27;MQ0=0;QD=36.84;SB=-1.330e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3091,235,0 chrIV 1361345 . T G 192.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.997;DP=62;Dels=0.00;FS=153.289;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=58.88;MQ0=0;MQRankSum=0.786;QD=3.10;ReadPosRankSum=-3.019;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:36,26:62:99:222,0,1214 chrIV 1402305 . C T 2858 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=1.7128;MLEAC=2;MLEAF=1.00;MQ=59.10;MQ0=0;QD=37.12;SB=-1.310e+03 GT:AD:DP:GQ:PL 1/1:0,76:77:99:2891,217,0 chrIV 1433710 . A T 2341 PASS AC=2;AF=1.00;AN=2;DP=71;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=32.97;SB=-1.152e+03 GT:AD:DP:GQ:PL 1/1:0,71:71:99:2374,184,0 chrIV 1524974 . A G 3453.01 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=2.9874;MLEAC=2;MLEAF=1.00;MQ=53.42;MQ0=0;QD=34.53;SB=-1.865e+03 GT:AD:DP:GQ:PL 1/1:0,100:100:99:3453,274,0 chrIV 1525313 . T G 1981 PASS AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=32.60;MQ0=0;QD=30.48;SB=-1.660e+02 GT:AD:DP:GQ:PL 1/1:0,65:65:99:2014,178,0 chrIV 1525335 . C G 1906 SnpCluster AC=2;AF=1.00;AN=2;DP=67;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.45;MQ0=0;QD=28.45;SB=-3.301e+01 GT:AD:DP:GQ:PL 1/1:0,67:67:99:1939,174,0 chrIV 1525340 . C A 1749 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=27.76;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1782,162,0 chrIV 1525345 . C G 1802 SnpCluster;filter AC=2;AF=1.00;AN=2;DP=65;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.43;MQ0=0;QD=27.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,65:65:99:1835,165,0 chrIV 1525351 . C G 1702 filter AC=2;AF=1.00;AN=2;DP=63;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=28.41;MQ0=0;QD=27.02;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,63:63:99:1735,156,0 chrIV 1525357 . C G 1572 filter AC=2;AF=1.00;AN=2;DP=60;Dels=0.00;FS=0.000;HaplotypeScore=13.5311;MLEAC=2;MLEAF=1.00;MQ=28.38;MQ0=0;QD=26.20;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,60:60:99:1605,144,0 chrIV 1525363 . C G 1304 filter AC=2;AF=1.00;AN=2;DP=52;Dels=0.00;FS=0.000;HaplotypeScore=47.3589;MLEAC=2;MLEAF=1.00;MQ=28.28;MQ0=0;QD=25.08;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,52:52:99:1337,120,0 chrIX 25376 . C T 157.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734;DP=107;Dels=0.00;FS=3.898;HaplotypeScore=2.5750;MLEAC=1;MLEAF=0.500;MQ=52.62;MQ0=0;MQRankSum=-1.052;QD=1.47;ReadPosRankSum=-4.504;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,17:107:99:187,0,3081 chrIX 25418 . T C 1324.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.988;DP=145;Dels=0.00;FS=6.559;HaplotypeScore=4.4589;MLEAC=1;MLEAF=0.500;MQ=54.35;MQ0=0;MQRankSum=1.597;QD=9.13;ReadPosRankSum=1.388;SB=-5.130e+02 GT:AD:DP:GQ:PL 0/1:91,54:145:99:1354,0,2920 chrIX 25586 . T C 309.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DP=129;Dels=0.00;FS=6.989;HaplotypeScore=1.2434;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=5;MQRankSum=-3.941;QD=2.40;ReadPosRankSum=-0.374;SB=-1.000e+02 GT:AD:DP:GQ:PL 0/1:97,32:129:99:339,0,2989 chrIX 76028 . G T 82.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.782;DP=112;Dels=0.00;FS=98.141;HaplotypeScore=9.5106;MLEAC=1;MLEAF=0.500;MQ=59.89;MQ0=0;MQRankSum=0.149;QD=0.73;ReadPosRankSum=-3.052;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,22:112:99:112,0,1040 chrIX 76038 . T G 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.120;DP=85;Dels=0.00;FS=73.019;HaplotypeScore=8.1218;MLEAC=1;MLEAF=0.500;MQ=59.73;MQ0=0;MQRankSum=-0.664;QD=0.12;ReadPosRankSum=-4.013;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,11:85:40:40,0,995 chrIX 241054 . C A 143.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.988;DP=92;Dels=0.01;FS=237.998;HaplotypeScore=7.8968;MLEAC=1;MLEAF=0.500;MQ=63.12;MQ0=0;MQRankSum=2.865;QD=1.55;ReadPosRankSum=-7.490;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:46,45:91:99:173,0,248 chrIX 241059 . G A 12.27 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580;DP=61;Dels=0.02;FS=69.218;HaplotypeScore=4.4444;MLEAC=1;MLEAF=0.500;MQ=61.57;MQ0=0;MQRankSum=1.361;QD=0.20;ReadPosRankSum=-3.676;SB=0.507 GT:AD:DP:GQ:PL 0/1:52,8:60:42:42,0,433 chrIX 285890 . T G 152.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.539;DP=72;Dels=0.00;FS=61.578;HaplotypeScore=4.9406;MLEAC=1;MLEAF=0.500;MQ=58.71;MQ0=0;MQRankSum=-1.338;QD=2.11;ReadPosRankSum=-1.713;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,25:72:99:182,0,1290 chrIX 299898 . T G 673.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.050;DP=75;Dels=0.00;FS=199.463;HaplotypeScore=0.9997;MLEAC=1;MLEAF=0.500;MQ=58.45;MQ0=0;MQRankSum=-1.342;QD=8.97;ReadPosRankSum=-6.994;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:39,36:75:99:703,0,1242 chrIX 318694 . T A 3387.01 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.9999;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=36.82;SB=-9.600e+02 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3387,259,0 chrIX 380951 . C A 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.778;DP=127;Dels=0.02;FS=36.896;HaplotypeScore=3.4779;MLEAC=1;MLEAF=0.500;MQ=59.23;MQ0=0;MQRankSum=0.862;QD=0.32;ReadPosRankSum=-3.252;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:102,23:125:70:70,0,1525 chrIX 432363 . G A 128.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533;DP=129;Dels=0.00;FS=31.815;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=55.28;MQ0=2;MQRankSum=-4.975;QD=0.99;ReadPosRankSum=-4.386;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:114,15:129:99:158,0,4004 chrIX 432374 . C T 262.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DP=123;Dels=0.00;FS=33.468;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=3;MQRankSum=-5.130;QD=2.13;ReadPosRankSum=-3.501;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:104,19:123:99:292,0,3617 chrIX 432859 . G A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.669;DP=89;Dels=0.00;FS=19.337;HaplotypeScore=3.2333;MLEAC=1;MLEAF=0.500;MQ=50.92;MQ0=0;MQRankSum=-3.969;QD=0.27;ReadPosRankSum=-0.149;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,10:89:54:54,0,2598 chrM 20934 . T G 14125.01 filter AC=2;AF=1.00;AN=2;DP=450;Dels=0.00;FS=0.000;HaplotypeScore=4.8192;MLEAC=2;MLEAF=1.00;MQ=59.62;MQ0=0;QD=31.39;SB=-5.694e+03 GT:AD:DP:GQ:PL 1/1:0,450:450:99:14125,1248,0 chrM 33743 . T A 303.01 filter AC=2;AF=1.00;AN=2;DP=9;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.34;MQ0=0;QD=33.67;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,9:9:27:336,27,0 chrM 39517 . G T 6246.01 PASS AC=2;AF=1.00;AN=2;DP=176;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.79;MQ0=0;QD=35.49;SB=-1.511e+03 GT:AD:DP:GQ:PL 1/1:0,176:176:99:6246,506,0 chrM 56539 . T G 75.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.989;DP=25;Dels=0.00;FS=18.921;HaplotypeScore=2.1559;MLEAC=1;MLEAF=0.500;MQ=56.58;MQ0=0;MQRankSum=0.272;QD=3.00;ReadPosRankSum=0.996;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:11,14:25:99:105,0,249 chrM 79562 . A C 18177.01 filter AC=2;AF=1.00;AN=2;DP=554;Dels=0.00;FS=0.000;HaplotypeScore=4.8131;MLEAC=2;MLEAF=1.00;MQ=59.76;MQ0=0;QD=32.81;SB=-7.261e+03 GT:AD:DP:GQ:PL 1/1:0,553:553:99:18177,1609,0 chrM 82507 . T A 2521 PASS AC=2;AF=1.00;AN=2;DP=88;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.58;MQ0=0;QD=28.65;SB=-1.595e+03 GT:AD:DP:GQ:PL 1/1:0,88:88:99:2554,193,0 chrV 48384 . T C 3502.01 PASS AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.02;SB=-1.447e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:99:3502,280,0 chrV 100596 . C A 75.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.904;DP=59;Dels=0.00;FS=127.162;HaplotypeScore=12.2662;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=-0.278;QD=1.27;ReadPosRankSum=-6.038;SB=-2.995e+00 GT:AD:DP:GQ:PL 0/1:31,28:59:49:105,0,49 chrV 100598 . G A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.806;DP=59;Dels=0.00;FS=134.146;HaplotypeScore=12.2662;MLEAC=1;MLEAF=0.500;MQ=58.82;MQ0=0;MQRankSum=0.027;QD=0.22;ReadPosRankSum=-5.716;SB=-3.019e+00 GT:AD:DP:GQ:PL 0/1:32,27:59:30:43,0,30 chrV 154531 . T A 3451.01 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.51;SB=-1.686e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3451,259,0 chrV 243686 . G A 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.554;DP=86;Dels=0.00;FS=199.240;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.03;MQ0=0;MQRankSum=-0.526;QD=0.31;ReadPosRankSum=-6.313;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:60,26:86:57:57,0,551 chrV 352394 . A G 2333 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.683;DP=72;Dels=0.00;FS=4.363;HaplotypeScore=0.7340;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;MQRankSum=-0.903;QD=32.40;ReadPosRankSum=-0.610;SB=-9.960e+02 GT:AD:DP:GQ:PL 1/1:1,71:72:99:2366,196,0 chrV 517529 . T C 3475.01 PASS AC=2;AF=1.00;AN=2;DP=91;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=38.19;SB=-1.382e+03 GT:AD:DP:GQ:PL 1/1:0,91:91:99:3475,262,0 chrV 522998 . C T 42.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.375;DP=80;Dels=0.00;FS=107.898;HaplotypeScore=37.7059;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=1.277;QD=0.53;ReadPosRankSum=-4.457;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,30:80:72:72,0,623 chrVI 12416 . T A 1580.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142;DP=191;Dels=0.00;FS=26.547;HaplotypeScore=5.5668;MLEAC=1;MLEAF=0.500;MQ=43.26;MQ0=9;MQRankSum=-3.263;QD=8.27;ReadPosRankSum=-0.986;SB=-7.190e+02 GT:AD:DP:GQ:PL 0/1:126,65:191:99:1610,0,3854 chrVI 97634 . T A 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.889;DP=119;Dels=0.01;FS=63.335;HaplotypeScore=11.8412;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=0.210;QD=0.43;ReadPosRankSum=-5.626;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,28:118:81:81,0,968 chrVI 177372 . G T 184.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.597;DP=98;Dels=0.00;FS=49.717;HaplotypeScore=18.2559;MLEAC=1;MLEAF=0.500;MQ=58.95;MQ0=0;MQRankSum=1.309;QD=1.88;ReadPosRankSum=-4.928;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,24:98:99:214,0,1967 chrVI 227503 . A T 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.978;DP=73;Dels=0.03;FS=100.789;HaplotypeScore=28.2009;MLEAC=1;MLEAF=0.500;MQ=53.05;MQ0=0;MQRankSum=-1.471;QD=2.22;ReadPosRankSum=-2.481;SB=-6.451e-03 GT:AD:DP:GQ:PL 0/1:33,38:71:99:192,0,267 chrVII 104051 . G T 146.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.399;DP=57;Dels=0.00;FS=102.142;HaplotypeScore=3.9650;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.980;QD=2.56;ReadPosRankSum=-4.811;SB=-5.655e-03 GT:AD:DP:GQ:PL 0/1:40,17:57:99:176,0,1302 chrVII 167640 . G A 70.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.561;DP=63;Dels=0.00;FS=117.850;HaplotypeScore=2.7140;MLEAC=1;MLEAF=0.500;MQ=58.78;MQ0=1;MQRankSum=0.763;QD=1.11;ReadPosRankSum=-4.015;SB=-1.366e-03 GT:AD:DP:GQ:PL 0/1:40,23:63:96:100,0,96 chrVII 267395 . T G 79.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.130;DP=97;Dels=0.00;FS=137.409;HaplotypeScore=4.7120;MLEAC=1;MLEAF=0.500;MQ=58.34;MQ0=0;MQRankSum=-0.854;QD=0.81;ReadPosRankSum=-4.058;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,21:97:99:109,0,2567 chrVII 386978 . C G 65.51 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=0.91;SB=-1.006e+03 GT:AD:DP:GQ:PL 1/1:0,72:72:12:98,12,0 chrVII 386979 . G C 89.26 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=51.30;MQ0=0;QD=1.24;SB=-9.923e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:15:122,15,0 chrVII 400572 . A T 199.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.973;DP=75;Dels=0.01;FS=188.021;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=0.073;QD=2.65;ReadPosRankSum=-6.589;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:44,30:74:99:229,0,135 chrVII 401674 . C A 2614 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.5784;MLEAC=2;MLEAF=1.00;MQ=42.39;MQ0=0;QD=31.12;SB=-1.251e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:2647,226,0 chrVII 401698 . T A 2042 PASS AC=2;AF=1.00;AN=2;DP=72;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=34.04;MQ0=0;QD=28.36;SB=-8.630e+02 GT:AD:DP:GQ:PL 1/1:0,72:72:99:2075,195,0 chrVII 530010 . C A 193.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=2.808;DP=180;Dels=0.00;FS=0.734;HaplotypeScore=104.3381;MLEAC=1;MLEAF=0.500;MQ=41.87;MQ0=0;MQRankSum=-5.970;QD=1.07;ReadPosRankSum=1.184;SB=-2.640e+02 GT:AD:DP:GQ:PL 0/1:148,32:180:99:223,0,3558 chrVII 530016 . A C 464.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.615;DP=186;Dels=0.00;FS=46.258;HaplotypeScore=76.4962;MLEAC=1;MLEAF=0.500;MQ=42.40;MQ0=0;MQRankSum=-0.352;QD=2.49;ReadPosRankSum=-4.948;SB=-2.610e+02 GT:AD:DP:GQ:PL 0/1:131,55:186:99:494,0,3288 chrVII 530022 . C A 180.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.158;DP=182;Dels=0.00;FS=2.323;HaplotypeScore=78.2201;MLEAC=1;MLEAF=0.500;MQ=41.93;MQ0=0;MQRankSum=-4.983;QD=0.99;ReadPosRankSum=2.920;SB=-2.370e+02 GT:AD:DP:GQ:PL 0/1:144,38:182:99:210,0,3448 chrVII 530028 . C A 185.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.347;DP=190;Dels=0.00;FS=4.374;HaplotypeScore=79.7719;MLEAC=1;MLEAF=0.500;MQ=42.50;MQ0=0;MQRankSum=-5.839;QD=0.97;ReadPosRankSum=3.593;SB=-2.250e+02 GT:AD:DP:GQ:PL 0/1:150,39:190:99:215,0,3693 chrVII 530034 . A C 1133.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;DP=184;Dels=0.00;FS=84.304;HaplotypeScore=41.7738;MLEAC=1;MLEAF=0.500;MQ=41.81;MQ0=0;MQRankSum=0.928;QD=6.16;ReadPosRankSum=-1.204;SB=-2.520e+02 GT:AD:DP:GQ:PL 0/1:117,67:184:99:1163,0,2554 chrVII 530071 . A T 66.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DP=151;Dels=0.00;FS=73.919;HaplotypeScore=227.6240;MLEAC=1;MLEAF=0.500;MQ=43.60;MQ0=0;MQRankSum=-7.238;QD=0.44;ReadPosRankSum=-3.679;SB=-2.000e+02 GT:AD:DP:GQ:PL 0/1:94,57:151:96:96,0,2299 chrVII 530076 . T A 584.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DP=145;Dels=0.00;FS=97.645;HaplotypeScore=89.8416;MLEAC=1;MLEAF=0.500;MQ=44.53;MQ0=0;MQRankSum=-5.875;QD=4.03;ReadPosRankSum=-5.100;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,33:145:99:614,0,2210 chrVII 530079 . C A 820.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=3.540;DP=143;Dels=0.00;FS=75.898;HaplotypeScore=57.8832;MLEAC=1;MLEAF=0.500;MQ=45.14;MQ0=0;MQRankSum=-6.750;QD=5.73;ReadPosRankSum=-7.128;SB=-1.940e+02 GT:AD:DP:GQ:PL 0/1:91,52:143:99:850,0,2168 chrVII 530082 . T A 589.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.464;DP=142;Dels=0.00;FS=95.356;HaplotypeScore=39.9329;MLEAC=1;MLEAF=0.500;MQ=45.23;MQ0=0;MQRankSum=-5.699;QD=4.15;ReadPosRankSum=-6.604;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:91,33:142:99:619,0,2323 chrVII 530093 . A C 139.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.243;DP=117;Dels=0.00;FS=35.312;HaplotypeScore=11.9846;MLEAC=1;MLEAF=0.500;MQ=50.05;MQ0=0;MQRankSum=-5.435;QD=1.19;ReadPosRankSum=-5.420;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:99,18:117:99:169,0,2576 chrVII 556013 . G A 199.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.680;DP=100;Dels=0.03;FS=267.071;HaplotypeScore=10.6947;MLEAC=1;MLEAF=0.500;MQ=58.60;MQ0=0;MQRankSum=-1.744;QD=1.99;ReadPosRankSum=-8.083;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:61,36:97:99:229,0,628 chrVII 720983 . T G 3003 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=1.8650;MLEAC=2;MLEAF=1.00;MQ=59.42;MQ0=0;QD=37.54;SB=-1.243e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:3036,235,0 chrVII 807885 . G A 107.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.199;DP=55;Dels=0.02;FS=112.995;HaplotypeScore=8.1383;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=-0.631;QD=1.95;ReadPosRankSum=-1.933;SB=-2.684e+00 GT:AD:DP:GQ:PL 0/1:38,16:54:99:137,0,141 chrVII 848557 . G A 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.256;DP=75;Dels=0.00;FS=83.445;HaplotypeScore=9.3921;MLEAC=1;MLEAF=0.500;MQ=57.74;MQ0=0;MQRankSum=0.083;QD=1.84;ReadPosRankSum=-5.222;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:42,32:75:99:168,0,347 chrVII 919959 . G T 714.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.417;DP=87;Dels=0.00;FS=97.709;HaplotypeScore=31.6895;MLEAC=1;MLEAF=0.500;MQ=50.22;MQ0=0;MQRankSum=-3.637;QD=8.21;ReadPosRankSum=-0.673;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,46:87:99:744,0,949 chrVII 919979 . T A 13.22 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.599;DP=75;Dels=0.00;FS=39.854;HaplotypeScore=44.4320;MLEAC=1;MLEAF=0.500;MQ=48.85;MQ0=0;MQRankSum=-5.427;QD=0.18;ReadPosRankSum=-4.039;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,30:75:43:43,0,1121 chrVII 919983 . C A 322.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.858;DP=75;Dels=0.00;FS=70.671;HaplotypeScore=29.6521;MLEAC=1;MLEAF=0.500;MQ=49.22;MQ0=0;MQRankSum=-4.941;QD=4.29;ReadPosRankSum=-3.351;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,35:75:99:352,0,1059 chrVII 1051846 . C T 187.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.266;DP=84;Dels=0.02;FS=116.253;HaplotypeScore=10.1414;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=1.148;QD=2.23;ReadPosRankSum=-6.288;SB=-2.376e+00 GT:AD:DP:GQ:PL 0/1:42,40:82:99:217,0,314 chrVIII 1744 . A C 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129;DP=69;Dels=0.00;FS=1.328;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=32.59;MQ0=20;MQRankSum=-3.386;QD=0.32;ReadPosRankSum=-0.161;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:53,16:69:52:52,0,1240 chrVIII 1748 . T C 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938;DP=68;Dels=0.00;FS=1.330;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=31.88;MQ0=20;MQRankSum=-3.851;QD=0.41;ReadPosRankSum=-0.417;SB=-3.701e+01 GT:AD:DP:GQ:PL 0/1:51,17:68:58:58,0,1184 chrVIII 1846 . A G 225.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942;DP=74;Dels=0.00;FS=2.156;HaplotypeScore=3.5018;MLEAC=1;MLEAF=0.500;MQ=42.19;MQ0=1;MQRankSum=-2.797;QD=3.04;ReadPosRankSum=-4.150;SB=-1.930e+02 GT:AD:DP:GQ:PL 0/1:50,24:74:99:255,0,1398 chrVIII 5293 . G T 110.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.766;DP=67;Dels=0.00;FS=12.493;HaplotypeScore=1.8110;MLEAC=1;MLEAF=0.500;MQ=46.56;MQ0=1;MQRankSum=-4.015;QD=1.64;ReadPosRankSum=1.172;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:54,13:67:99:140,0,1742 chrVIII 5556 . C T 163.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594;DP=125;Dels=0.00;FS=5.174;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.39;MQ0=4;MQRankSum=-7.431;QD=1.30;ReadPosRankSum=2.015;SB=-8.401e+01 GT:AD:DP:GQ:PL 0/1:87,38:125:99:193,0,2972 chrVIII 159794 . T G 141.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.982;DP=68;Dels=0.00;FS=75.499;HaplotypeScore=3.2300;MLEAC=1;MLEAF=0.500;MQ=58.63;MQ0=0;MQRankSum=-0.817;QD=2.07;ReadPosRankSum=-0.945;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:45,23:68:99:171,0,1324 chrVIII 161791 . G T 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718;DP=49;Dels=0.00;FS=31.667;HaplotypeScore=0.8321;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=-1.716;QD=3.39;ReadPosRankSum=-2.143;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:33,16:49:99:196,0,861 chrVIII 214273 . A T 623.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-11.317;DP=802;Dels=0.02;FS=624.147;HaplotypeScore=55.0090;MLEAC=1;MLEAF=0.500;MQ=36.83;MQ0=35;MQRankSum=1.998;QD=0.78;ReadPosRankSum=-10.827;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:655,128:784:99:653,0,6488 chrVIII 216123 . C T 2332 filter AC=2;AF=1.00;AN=2;DP=297;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=15.47;MQ0=232;QD=7.85;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:219,78:297:99:2365,196,0 chrVIII 236987 . G A 433.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.761;DP=55;Dels=0.00;FS=144.481;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.30;MQ0=0;MQRankSum=0.876;QD=7.87;ReadPosRankSum=-4.558;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:19,36:55:99:463,0,260 chrVIII 236993 . T A 299.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.311;DP=57;Dels=0.00;FS=157.251;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.36;MQ0=0;MQRankSum=0.577;QD=5.25;ReadPosRankSum=-4.660;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:23,34:57:99:329,0,410 chrVIII 317564 . T G 28.01 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.886;DP=80;Dels=0.00;FS=62.099;HaplotypeScore=0.9734;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.174;QD=0.35;ReadPosRankSum=0.960;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,28:80:58:58,0,1410 chrVIII 340348 . G T 69.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194;DP=55;Dels=0.00;FS=48.193;HaplotypeScore=17.2460;MLEAC=1;MLEAF=0.500;MQ=57.00;MQ0=0;MQRankSum=-1.717;QD=1.25;ReadPosRankSum=-1.113;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,13:55:99:99,0,1225 chrVIII 383954 . T G 97.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150;DP=43;Dels=0.00;FS=59.488;HaplotypeScore=2.5644;MLEAC=1;MLEAF=0.500;MQ=58.92;MQ0=0;MQRankSum=-0.618;QD=2.26;ReadPosRankSum=-1.077;SB=-6.347e-03 GT:AD:DP:GQ:PL 0/1:26,17:43:99:127,0,805 chrVIII 387115 . C T 115.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.823;DP=60;Dels=0.00;FS=121.247;HaplotypeScore=27.4070;MLEAC=1;MLEAF=0.500;MQ=58.01;MQ0=0;MQRankSum=-1.171;QD=1.92;ReadPosRankSum=-4.440;SB=0.062 GT:AD:DP:GQ:PL 0/1:37,23:60:99:145,0,219 chrVIII 396971 . G A 138.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.013;DP=65;Dels=0.00;FS=78.730;HaplotypeScore=12.3094;MLEAC=1;MLEAF=0.500;MQ=59.65;MQ0=0;MQRankSum=-0.072;QD=2.12;ReadPosRankSum=-4.588;SB=1.75 GT:AD:DP:GQ:PL 0/1:51,14:65:99:168,0,375 chrVIII 417054 . G A 3073 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=35.32;SB=-1.636e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:3106,244,0 chrVIII 497163 . G C 154.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.142;DP=63;Dels=0.00;FS=43.008;HaplotypeScore=5.3589;MLEAC=1;MLEAF=0.500;MQ=56.23;MQ0=0;MQRankSum=-2.662;QD=2.44;ReadPosRankSum=-0.426;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,17:63:99:184,0,1299 chrVIII 505075 . C G 2780 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.03;MQ0=0;QD=34.75;SB=-1.245e+03 GT:AD:DP:GQ:PL 1/1:0,79:79:99:2813,220,0 chrVIII 524447 . C G 2486 PASS AC=2;AF=1.00;AN=2;DP=70;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.40;MQ0=0;QD=35.51;SB=-1.172e+03 GT:AD:DP:GQ:PL 1/1:0,70:70:99:2519,190,0 chrVIII 557342 . T C 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.354;DP=76;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=11.12;MQ0=65;MQRankSum=0.825;QD=0.14;ReadPosRankSum=-1.532;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:74,2:76:40:40,0,207 chrVIII 562440 . A G 142.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.91;MQ0=18;MQRankSum=0.110;QD=1.18;ReadPosRankSum=0.180;SB=-7.007e+00 GT:AD:DP:GQ:PL 0/1:98,22:120:99:172,0,2111 chrVIII 562443 . A G 171.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018;DP=122;Dels=0.00;FS=1.966;HaplotypeScore=0.9983;MLEAC=1;MLEAF=0.500;MQ=32.91;MQ0=18;MQRankSum=0.816;QD=1.40;ReadPosRankSum=-0.210;SB=-4.001e+01 GT:AD:DP:GQ:PL 0/1:99,23:122:99:201,0,2142 chrVIII 562637 . T G 10.42 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666;DP=10;Dels=0.00;FS=6.532;HaplotypeScore=6.6322;MLEAC=1;MLEAF=0.500;MQ=24.49;MQ0=1;MQRankSum=0.762;QD=1.04;ReadPosRankSum=-0.762;SB=-7.001e+00 GT:AD:DP:GQ:PL 0/1:8,2:10:40:40,0,92 chrX 60697 . G T 140.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.718;DP=75;Dels=0.00;FS=98.971;HaplotypeScore=2.9453;MLEAC=1;MLEAF=0.500;MQ=60.08;MQ0=0;MQRankSum=0.949;QD=1.87;ReadPosRankSum=-5.248;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:48,27:75:99:170,0,586 chrX 97478 . G A 3616.01 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.25;MQ0=0;QD=37.28;SB=-1.383e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3616,271,0 chrX 136931 . G A 134.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.992;DP=104;Dels=0.01;FS=215.061;HaplotypeScore=1.9654;MLEAC=1;MLEAF=0.500;MQ=59.64;MQ0=0;MQRankSum=-0.581;QD=1.29;ReadPosRankSum=-7.490;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:66,37:103:99:164,0,544 chrX 199170 . A C 904 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.628;DP=34;Dels=0.00;FS=5.643;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=30.96;MQ0=1;MQRankSum=-0.788;QD=26.59;ReadPosRankSum=-1.208;SB=-2.120e+02 GT:AD:DP:GQ:PL 1/1:1,33:34:90:937,90,0 chrX 200219 . A G 753 filter AC=2;AF=1.00;AN=2;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=24.05;MQ0=7;QD=20.92;SB=-2.810e+02 GT:AD:DP:GQ:PL 1/1:0,36:36:72:786,72,0 chrX 265891 . G T 109.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.745;DP=105;Dels=0.00;FS=156.685;HaplotypeScore=6.0838;MLEAC=1;MLEAF=0.500;MQ=59.42;MQ0=0;MQRankSum=0.609;QD=1.04;ReadPosRankSum=-4.961;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:87,18:105:99:139,0,641 chrX 265895 . C T 93.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.301;DP=107;Dels=0.00;FS=193.493;HaplotypeScore=6.9504;MLEAC=1;MLEAF=0.500;MQ=59.43;MQ0=0;MQRankSum=0.362;QD=0.87;ReadPosRankSum=-5.815;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:87,20:107:99:123,0,640 chrX 265950 . T G 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.111;DP=116;Dels=0.00;FS=114.413;HaplotypeScore=7.5810;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-1.329;QD=0.75;ReadPosRankSum=-2.127;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:90,26:116:99:117,0,2230 chrX 280786 . C T 68.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322;DP=79;Dels=0.04;FS=18.665;HaplotypeScore=6.4428;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.048;QD=0.86;ReadPosRankSum=-1.451;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:53,23:76:98:98,0,814 chrX 358232 . G T 162.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.212;DP=48;Dels=0.00;FS=86.603;HaplotypeScore=5.3948;MLEAC=1;MLEAF=0.500;MQ=58.73;MQ0=0;MQRankSum=0.109;QD=3.38;ReadPosRankSum=-4.361;SB=-5.149e-03 GT:AD:DP:GQ:PL 0/1:25,23:48:95:192,0,95 chrX 393843 . T A 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.939;DP=71;Dels=0.00;FS=91.856;HaplotypeScore=3.3835;MLEAC=1;MLEAF=0.500;MQ=58.02;MQ0=0;MQRankSum=-0.634;QD=0.34;ReadPosRankSum=-4.122;SB=-6.516e-03 GT:AD:DP:GQ:PL 0/1:51,19:71:54:54,0,450 chrX 424928 . G T 108.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.808;DP=59;Dels=0.00;FS=163.454;HaplotypeScore=2.5559;MLEAC=1;MLEAF=0.500;MQ=59.22;MQ0=0;MQRankSum=-0.336;QD=1.83;ReadPosRankSum=-4.558;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:32,27:59:99:138,0,494 chrX 424930 . A T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300;DP=58;Dels=0.00;FS=156.390;HaplotypeScore=2.5559;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=-0.654;QD=0.41;ReadPosRankSum=-5.985;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:32,26:58:54:54,0,514 chrX 438543 . G T 126.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.426;DP=91;Dels=0.00;FS=126.035;HaplotypeScore=4.5830;MLEAC=1;MLEAF=0.500;MQ=58.98;MQ0=0;MQRankSum=0.781;QD=1.38;ReadPosRankSum=-4.949;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,20:91:99:156,0,2168 chrX 523921 . G A 52.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659;DP=72;Dels=0.00;FS=66.753;HaplotypeScore=0.9987;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.115;QD=0.72;ReadPosRankSum=-4.350;SB=-6.175e-03 GT:AD:DP:GQ:PL 0/1:59,13:72:82:82,0,276 chrX 714763 . T G 504.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-7.550;DP=110;Dels=0.00;FS=179.581;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=48.47;MQ0=0;MQRankSum=-0.733;QD=4.58;ReadPosRankSum=-3.850;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:67,43:110:99:534,0,2226 chrX 715050 . G A 103.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.049;DP=96;Dels=0.00;FS=8.907;HaplotypeScore=0.8667;MLEAC=1;MLEAF=0.500;MQ=45.29;MQ0=0;MQRankSum=-4.647;QD=1.07;ReadPosRankSum=0.953;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:83,13:96:99:133,0,2644 chrX 715054 . G T 188.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.056;DP=94;Dels=0.00;FS=13.605;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=43.41;MQ0=0;MQRankSum=-3.004;QD=2.00;ReadPosRankSum=0.650;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:79,15:94:99:218,0,2317 chrX 715068 . G A 349.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DP=105;Dels=0.00;FS=7.019;HaplotypeScore=2.7341;MLEAC=1;MLEAF=0.500;MQ=40.07;MQ0=0;MQRankSum=-1.201;QD=3.32;ReadPosRankSum=1.831;SB=-3.801e+01 GT:AD:DP:GQ:PL 0/1:83,22:105:99:379,0,2431 chrX 715072 . G T 454.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.560;DP=101;Dels=0.00;FS=8.933;HaplotypeScore=6.6070;MLEAC=1;MLEAF=0.500;MQ=38.28;MQ0=0;MQRankSum=-1.041;QD=4.50;ReadPosRankSum=1.392;SB=-4.401e+01 GT:AD:DP:GQ:PL 0/1:77,24:101:99:484,0,2152 chrX 715081 . T G 508.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DP=104;Dels=0.01;FS=7.111;HaplotypeScore=11.4644;MLEAC=1;MLEAF=0.500;MQ=37.26;MQ0=5;MQRankSum=0.929;QD=4.88;ReadPosRankSum=2.136;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:74,29:103:99:538,0,2044 chrX 715087 . A G 525.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.359;DP=109;Dels=0.01;FS=7.111;HaplotypeScore=9.6969;MLEAC=1;MLEAF=0.500;MQ=36.32;MQ0=10;MQRankSum=0.037;QD=4.82;ReadPosRankSum=1.797;SB=-5.301e+01 GT:AD:DP:GQ:PL 0/1:75,33:108:99:555,0,2050 chrX 715095 . G A 1655.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.644;DP=107;Dels=0.00;FS=3.616;HaplotypeScore=3.8978;MLEAC=1;MLEAF=0.500;MQ=34.53;MQ0=15;MQRankSum=-2.006;QD=15.47;ReadPosRankSum=0.292;SB=-5.300e+02 GT:AD:DP:GQ:PL 0/1:42,65:107:99:1685,0,668 chrX 715099 . G T 1651.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DP=111;Dels=0.00;FS=2.287;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=32.49;MQ0=19;MQRankSum=-1.470;QD=14.87;ReadPosRankSum=1.953;SB=-4.420e+02 GT:AD:DP:GQ:PL 0/1:49,62:111:99:1681,0,708 chrX 715108 . A T 1456.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.916;DP=114;Dels=0.00;FS=3.338;HaplotypeScore=1.9815;MLEAC=1;MLEAF=0.500;MQ=29.72;MQ0=22;MQRankSum=-0.300;QD=12.77;ReadPosRankSum=2.724;SB=-4.270e+02 GT:AD:DP:GQ:PL 0/1:58,56:114:99:1486,0,742 chrX 715114 . G A 1396.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DP=117;Dels=0.00;FS=1.946;HaplotypeScore=2.7155;MLEAC=1;MLEAF=0.500;MQ=28.69;MQ0=23;MQRankSum=0.884;QD=11.93;ReadPosRankSum=3.675;SB=-3.940e+02 GT:AD:DP:GQ:PL 0/1:64,53:117:99:1426,0,724 chrX 715122 . G A 1328.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.572;DP=128;Dels=0.00;FS=4.178;HaplotypeScore=1.7128;MLEAC=1;MLEAF=0.500;MQ=26.20;MQ0=27;MQRankSum=2.213;QD=10.38;ReadPosRankSum=4.413;SB=-3.350e+02 GT:AD:DP:GQ:PL 0/1:78,49:127:99:1358,0,729 chrX 715126 . A T 1300.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.132;DP=120;Dels=0.00;FS=5.950;HaplotypeScore=1.7128;MLEAC=1;MLEAF=0.500;MQ=25.96;MQ0=27;MQRankSum=3.171;QD=10.83;ReadPosRankSum=3.124;SB=-3.190e+02 GT:AD:DP:GQ:PL 0/1:72,47:119:99:1330,0,512 chrX 715129 . C A 1243.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DP=121;Dels=0.00;FS=4.438;HaplotypeScore=1.9772;MLEAC=1;MLEAF=0.500;MQ=25.87;MQ0=27;MQRankSum=3.127;QD=10.27;ReadPosRankSum=1.956;SB=-2.920e+02 GT:AD:DP:GQ:PL 0/1:73,46:120:99:1273,0,522 chrX 715132 . T A 1282.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.184;DP=127;Dels=0.00;FS=5.666;HaplotypeScore=1.9772;MLEAC=1;MLEAF=0.500;MQ=25.01;MQ0=29;MQRankSum=3.461;QD=10.09;ReadPosRankSum=1.007;SB=-3.230e+02 GT:AD:DP:GQ:PL 0/1:78,48:126:99:1312,0,519 chrX 715141 . A G 1151.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.814;DP=133;Dels=0.00;FS=0.799;HaplotypeScore=5.5457;MLEAC=1;MLEAF=0.500;MQ=23.84;MQ0=33;MQRankSum=2.206;QD=8.65;ReadPosRankSum=-3.799;SB=-2.590e+02 GT:AD:DP:GQ:PL 0/1:82,51:133:99:1181,0,553 chrX 738075 . G T 980.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.040;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.8941;MLEAC=1;MLEAF=0.500;MQ=37.67;MQ0=2;MQRankSum=0.617;QD=9.07;ReadPosRankSum=0.016;SB=-2.980e+02 GT:AD:DP:GQ:PL 0/1:61,46:108:99:1010,0,1875 chrX 740238 . T C 463 filter AC=2;AF=1.00;AN=2;DP=26;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=22.78;MQ0=10;QD=17.81;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,26:26:45:496,45,0 chrXI 67798 . G T 50.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.819;DP=59;Dels=0.00;FS=126.072;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.97;MQ0=0;MQRankSum=-0.046;QD=0.85;ReadPosRankSum=-5.477;SB=-3.016e+00 GT:AD:DP:GQ:PL 0/1:46,13:59:80:80,0,312 chrXI 217124 . G A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.085;DP=100;Dels=0.00;FS=118.392;HaplotypeScore=7.7395;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.057;QD=0.23;ReadPosRankSum=-4.947;SB=-6.518e-03 GT:AD:DP:GQ:PL 0/1:82,18:100:53:53,0,641 chrXI 277055 . G T 155.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.046;DP=87;Dels=0.01;FS=108.253;HaplotypeScore=15.9512;MLEAC=1;MLEAF=0.500;MQ=58.19;MQ0=0;MQRankSum=-0.716;QD=1.78;ReadPosRankSum=-1.493;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,27:86:99:185,0,1399 chrXI 277059 . A T 145.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.232;DP=86;Dels=0.00;FS=152.881;HaplotypeScore=15.9512;MLEAC=1;MLEAF=0.500;MQ=58.48;MQ0=0;MQRankSum=0.957;QD=1.69;ReadPosRankSum=-2.094;SB=-2.189e-03 GT:AD:DP:GQ:PL 0/1:57,29:86:99:175,0,1402 chrXI 385128 . G T 138.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-6.398;DP=103;Dels=0.00;FS=285.734;HaplotypeScore=1.5115;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=0.065;QD=1.34;ReadPosRankSum=-8.331;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:63,40:103:99:168,0,365 chrXI 385129 . A T 83.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-8.088;DP=103;Dels=0.00;FS=289.734;HaplotypeScore=1.5115;MLEAC=1;MLEAF=0.500;MQ=59.16;MQ0=0;MQRankSum=-0.307;QD=0.81;ReadPosRankSum=-8.364;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:62,41:103:99:113,0,374 chrXI 385133 . C T 229.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=-7.508;DP=100;Dels=0.00;FS=244.491;HaplotypeScore=1.5115;MLEAC=1;MLEAF=0.500;MQ=59.13;MQ0=0;MQRankSum=1.102;QD=2.29;ReadPosRankSum=-7.580;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:64,36:100:99:259,0,428 chrXI 524066 . A T 154.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.975;DP=116;Dels=0.00;FS=165.916;HaplotypeScore=52.9605;MLEAC=1;MLEAF=0.500;MQ=60.02;MQ0=0;MQRankSum=-1.702;QD=1.33;ReadPosRankSum=-5.757;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:87,29:116:99:184,0,364 chrXI 524076 . C T 116.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.171;DP=130;Dels=0.00;FS=256.640;HaplotypeScore=19.6993;MLEAC=1;MLEAF=0.500;MQ=60.02;MQ0=0;MQRankSum=-2.439;QD=0.89;ReadPosRankSum=-5.533;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:103,27:130:99:146,0,1069 chrXI 638438 . C T 270.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478;DP=112;Dels=0.00;FS=81.841;HaplotypeScore=8.0261;MLEAC=1;MLEAF=0.500;MQ=59.04;MQ0=0;MQRankSum=0.655;QD=2.41;ReadPosRankSum=-6.122;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:78,34:112:99:300,0,1088 chrXI 666768 . T G 21.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490;DP=26;Dels=0.04;FS=5.348;HaplotypeScore=61.0381;MLEAC=1;MLEAF=0.500;MQ=33.07;MQ0=3;MQRankSum=-1.745;QD=0.81;ReadPosRankSum=-0.468;SB=-7.464e-02 GT:AD:DP:GQ:PL 0/1:21,4:25:15:51,0,15 chrXI 666789 . T G 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.528;DP=22;Dels=0.00;FS=4.713;HaplotypeScore=16.5835;MLEAC=1;MLEAF=0.500;MQ=26.14;MQ0=2;MQRankSum=0.289;QD=1.86;ReadPosRankSum=-0.041;SB=-1.301e+01 GT:AD:DP:GQ:PL 0/1:14,8:22:71:71,0,99 chrXI 666812 . T G 75.04 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.466;DP=11;Dels=0.00;FS=7.404;HaplotypeScore=1.9330;MLEAC=1;MLEAF=0.500;MQ=26.62;MQ0=0;MQRankSum=0.825;QD=6.82;ReadPosRankSum=0.143;SB=-8.408e+01 GT:AD:DP:GQ:PL 0/1:5,6:11:18:105,0,18 chrXII 161 . T C 203.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.457;DP=117;Dels=0.00;FS=18.855;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=33.60;MQ0=20;MQRankSum=-3.420;QD=1.74;ReadPosRankSum=-1.055;SB=-6.801e+01 GT:AD:DP:GQ:PL 0/1:95,22:117:99:233,0,2237 chrXII 5741 . T C 186.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=6.565;DP=141;Dels=0.00;FS=0.000;HaplotypeScore=3.5462;MLEAC=1;MLEAF=0.500;MQ=39.44;MQ0=0;MQRankSum=-5.801;QD=1.32;ReadPosRankSum=-2.533;SB=-9.007e+00 GT:AD:DP:GQ:PL 0/1:119,21:141:99:216,0,4064 chrXII 5757 . A T 106.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.170;DP=143;Dels=0.00;FS=8.838;HaplotypeScore=2.9977;MLEAC=1;MLEAF=0.500;MQ=40.00;MQ0=0;MQRankSum=-6.113;QD=0.74;ReadPosRankSum=0.240;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:125,18:143:99:136,0,4205 chrXII 5823 . A G 132.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596;DP=82;Dels=0.00;FS=36.193;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.98;MQ0=0;MQRankSum=-5.872;QD=1.61;ReadPosRankSum=-3.913;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:68,14:82:99:162,0,2168 chrXII 10965 . T C 202.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DP=89;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=15.91;MQ0=66;MQRankSum=-1.921;QD=2.27;ReadPosRankSum=0.220;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:76,13:89:99:232,0,433 chrXII 48880 . G A 373.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.430;DP=94;Dels=0.02;FS=241.149;HaplotypeScore=6.0230;MLEAC=1;MLEAF=0.500;MQ=59.60;MQ0=0;MQRankSum=-0.085;QD=3.97;ReadPosRankSum=-5.137;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:31,61:92:99:403,0,239 chrXII 48888 . G A 135.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.110;DP=79;Dels=0.01;FS=211.377;HaplotypeScore=16.0773;MLEAC=1;MLEAF=0.500;MQ=59.53;MQ0=0;MQRankSum=0.363;QD=1.71;ReadPosRankSum=-7.110;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,43:78:99:165,0,414 chrXII 220717 . G A 433 filter AC=2;AF=1.00;AN=2;DP=14;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=29.00;MQ0=0;QD=30.93;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,14:14:42:466,42,0 chrXII 251213 . T A 16.11 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.869;DP=80;Dels=0.01;FS=114.357;HaplotypeScore=0.9665;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.041;QD=0.20;ReadPosRankSum=-5.049;SB=-3.012e+00 GT:AD:DP:GQ:PL 0/1:63,16:79:46:46,0,630 chrXII 291384 . A G 3230.05 PASS AC=2;AF=1.00;AN=2;DP=97;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=0;QD=33.30;SB=-1.068e+03 GT:AD:DP:GQ:PL 1/1:0,97:97:99:3264,259,0 chrXII 291386 . A G 3368.01 PASS AC=2;AF=1.00;AN=2;DP=95;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.56;MQ0=0;QD=35.45;SB=-1.047e+03 GT:AD:DP:GQ:PL 1/1:0,95:95:99:3368,262,0 chrXII 528749 . T A 3515.01 PASS AC=2;AF=1.00;AN=2;DP=110;Dels=0.00;FS=0.000;HaplotypeScore=2.8586;MLEAC=2;MLEAF=1.00;MQ=59.24;MQ0=0;QD=31.95;SB=-2.101e+03 GT:AD:DP:GQ:PL 1/1:0,110:110:99:3515,280,0 chrXII 543095 . G T 365.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.469;DP=84;Dels=0.00;FS=65.926;HaplotypeScore=5.3501;MLEAC=1;MLEAF=0.500;MQ=58.89;MQ0=0;MQRankSum=-0.174;QD=4.35;ReadPosRankSum=-3.290;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,32:84:99:395,0,1253 chrXII 636568 . C T 170.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.654;DP=95;Dels=0.01;FS=102.110;HaplotypeScore=8.9015;MLEAC=1;MLEAF=0.500;MQ=59.76;MQ0=0;MQRankSum=2.806;QD=1.79;ReadPosRankSum=-3.881;SB=-4.795e-03 GT:AD:DP:GQ:PL 0/1:45,49:94:99:200,0,424 chrXII 636574 . C T 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.116;DP=92;Dels=0.00;FS=106.728;HaplotypeScore=13.4606;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=1.118;QD=1.08;ReadPosRankSum=-4.836;SB=0.101 GT:AD:DP:GQ:PL 0/1:46,46:92:99:129,0,407 chrXII 645252 . G A 15.14 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.257;DP=83;Dels=0.00;FS=126.305;HaplotypeScore=13.9738;MLEAC=1;MLEAF=0.500;MQ=58.53;MQ0=0;MQRankSum=0.627;QD=0.18;ReadPosRankSum=-4.621;SB=-6.517e-03 GT:AD:DP:GQ:PL 0/1:62,21:83:45:45,0,616 chrXII 646385 . G A 50.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256;DP=76;Dels=0.01;FS=25.320;HaplotypeScore=20.4225;MLEAC=1;MLEAF=0.500;MQ=58.59;MQ0=0;MQRankSum=-0.088;QD=0.66;ReadPosRankSum=-2.611;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:38,37:75:80:80,0,599 chrXII 725936 . G A 4071.01 PASS AC=2;AF=1.00;AN=2;DP=106;Dels=0.00;FS=0.000;HaplotypeScore=0.9832;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=38.41;SB=-6.040e+02 GT:AD:DP:GQ:PL 1/1:0,106:106:99:4071,301,0 chrXII 828903 . C T 3157 PASS AC=2;AF=1.00;AN=2;DP=84;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=37.58;SB=-1.570e+03 GT:AD:DP:GQ:PL 1/1:0,84:84:99:3190,238,0 chrXII 944060 . G A 151.13 filter AC=2;AF=1.00;AN=2;DP=59;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.84;MQ0=36;QD=2.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:33,26:59:18:184,18,0 chrXII 944099 . A C 28.77 LowQual;filter AC=2;AF=1.00;AN=2;DP=40;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.93;MQ0=29;QD=0.72;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:29,11:40:6:60,6,0 chrXII 944238 . C A 35.77 filter AC=2;AF=1.00;AN=2;DP=46;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=8.70;MQ0=36;QD=0.78;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:28,18:46:6:67,6,0 chrXII 1025001 . G T 53.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DP=60;Dels=0.02;FS=94.008;HaplotypeScore=23.7973;MLEAC=1;MLEAF=0.500;MQ=59.75;MQ0=0;MQRankSum=-1.955;QD=0.88;ReadPosRankSum=3.456;SB=-2.588e+01 GT:AD:DP:GQ:PL 0/1:29,30:59:83:83,0,118 chrXII 1025005 . A T 101.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-0.077;DP=64;Dels=0.00;FS=111.466;HaplotypeScore=23.7973;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=0.691;QD=1.58;ReadPosRankSum=-0.733;SB=-2.804e+00 GT:AD:DP:GQ:PL 0/1:37,27:64:99:131,0,168 chrXII 1039435 . T A 2665 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.49;MQ0=0;QD=36.51;SB=-1.301e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2698,211,0 chrXIII 26584 . A T 22.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.586;DP=69;Dels=0.00;FS=70.917;HaplotypeScore=15.6163;MLEAC=1;MLEAF=0.500;MQ=58.74;MQ0=0;MQRankSum=-1.699;QD=0.32;ReadPosRankSum=-2.839;SB=0.011 GT:AD:DP:GQ:PL 0/1:58,11:69:52:52,0,927 chrXIII 34473 . T G 3423.01 PASS AC=2;AF=1.00;AN=2;DP=92;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=37.21;SB=-1.053e+03 GT:AD:DP:GQ:PL 1/1:0,92:92:99:3423,265,0 chrXIII 158433 . T A 58.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.622;DP=55;Dels=0.00;FS=130.755;HaplotypeScore=1.7351;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=0.444;QD=1.05;ReadPosRankSum=-3.184;SB=-3.000e+00 GT:AD:DP:GQ:PL 0/1:40,15:55:88:88,0,487 chrXIII 192013 . C T 88.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.602;DP=115;Dels=0.01;FS=176.541;HaplotypeScore=14.9313;MLEAC=1;MLEAF=0.500;MQ=59.40;MQ0=0;MQRankSum=-0.454;QD=0.77;ReadPosRankSum=-6.872;SB=-6.512e-03 GT:AD:DP:GQ:PL 0/1:72,39:114:99:118,0,1071 chrXIII 202197 . T C 321.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.065;DP=107;Dels=0.00;FS=60.699;HaplotypeScore=0.9916;MLEAC=1;MLEAF=0.500;MQ=41.96;MQ0=10;MQRankSum=-4.777;QD=3.00;ReadPosRankSum=-6.146;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:41,66:107:99:351,0,1020 chrXIII 238793 . A T 166.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-8.149;DP=108;Dels=0.02;FS=247.099;HaplotypeScore=104.4971;MLEAC=1;MLEAF=0.500;MQ=55.10;MQ0=0;MQRankSum=-1.246;QD=1.54;ReadPosRankSum=-6.770;SB=-2.042e+00 GT:AD:DP:GQ:PL 0/1:60,46:106:99:196,0,218 chrXIII 238806 . G T 104.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.643;DP=72;Dels=0.00;FS=123.023;HaplotypeScore=11.9082;MLEAC=1;MLEAF=0.500;MQ=56.10;MQ0=0;MQRankSum=-2.334;QD=1.44;ReadPosRankSum=-5.557;SB=-5.431e-03 GT:AD:DP:GQ:PL 0/1:57,14:72:99:134,0,299 chrXIII 325905 . T A 2799 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.52;MQ0=0;QD=36.35;SB=-1.484e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2832,220,0 chrXIII 361550 . G A 56.97 filter AC=2;AF=1.00;AN=2;DP=16;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=11.52;MQ0=12;QD=3.56;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,16:16:9:89,9,0 chrXIII 411474 . G T 87.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430;DP=71;Dels=0.00;FS=66.381;HaplotypeScore=3.2272;MLEAC=1;MLEAF=0.500;MQ=59.74;MQ0=0;MQRankSum=0.849;QD=1.23;ReadPosRankSum=1.066;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:60,11:71:99:117,0,735 chrXIII 448333 . G A 66.51 PASS AC=2;AF=1.00;AN=2;DP=93;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.50;MQ0=0;QD=0.72;SB=-1.685e+03 GT:AD:DP:GQ:PL 1/1:0,93:93:12:99,12,0 chrXIII 448334 . A G 16.85 LowQual;filter AC=2;AF=1.00;AN=2;DP=94;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.26;MQ0=0;QD=0.18;SB=-1.668e+03 GT:AD:DP:GQ:PL 1/1:0,94:94:6:48,6,0 chrXIII 508047 . G T 618.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180;DP=78;Dels=0.00;FS=116.988;HaplotypeScore=43.3123;MLEAC=1;MLEAF=0.500;MQ=54.11;MQ0=0;MQRankSum=-1.410;QD=7.92;ReadPosRankSum=0.600;SB=-5.149e-03 GT:AD:DP:GQ:PL 0/1:43,35:78:99:648,0,1114 chrXIII 508050 . C T 40.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.293;DP=72;Dels=0.00;FS=90.408;HaplotypeScore=43.3123;MLEAC=1;MLEAF=0.500;MQ=53.59;MQ0=0;MQRankSum=-2.477;QD=0.56;ReadPosRankSum=1.390;SB=-6.485e-03 GT:AD:DP:GQ:PL 0/1:45,27:72:70:70,0,1116 chrXIII 508063 . A T 477.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.205;DP=73;Dels=0.01;FS=148.200;HaplotypeScore=18.7700;MLEAC=1;MLEAF=0.500;MQ=53.68;MQ0=0;MQRankSum=-3.503;QD=6.53;ReadPosRankSum=-4.600;SB=-2.684e+00 GT:AD:DP:GQ:PL 0/1:39,33:72:99:507,0,1177 chrXIII 571267 . G A 189.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.357;DP=85;Dels=0.00;FS=82.466;HaplotypeScore=10.5354;MLEAC=1;MLEAF=0.500;MQ=59.07;MQ0=0;MQRankSum=-1.244;QD=2.22;ReadPosRankSum=-5.621;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:49,36:85:99:219,0,255 chrXIII 630505 . A G 3530.01 PASS AC=2;AF=1.00;AN=2;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=2.3113;MLEAC=2;MLEAF=1.00;MQ=59.75;MQ0=0;QD=36.02;SB=-1.896e+03 GT:AD:DP:GQ:PL 1/1:0,98:98:99:3530,268,0 chrXIII 672129 . T C 2545 PASS AC=2;AF=1.00;AN=2;DP=73;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=34.86;SB=-1.034e+03 GT:AD:DP:GQ:PL 1/1:0,73:73:99:2578,196,0 chrXIII 674889 . C T 24.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192;DP=65;Dels=0.00;FS=32.759;HaplotypeScore=15.9603;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-1.170;QD=0.37;ReadPosRankSum=-1.915;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:47,18:65:54:54,0,708 chrXIII 680936 . T C 58.97 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=0.68;SB=-1.193e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:9:91,9,0 chrXIII 680940 . C T 79.51 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;QD=0.91;SB=-1.211e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:12:112,12,0 chrXIII 772695 . C T 136.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.566;DP=67;Dels=0.00;FS=115.084;HaplotypeScore=50.0011;MLEAC=1;MLEAF=0.500;MQ=55.43;MQ0=0;MQRankSum=-1.490;QD=2.03;ReadPosRankSum=-4.013;SB=-5.431e-03 GT:AD:DP:GQ:PL 0/1:43,23:67:99:166,0,793 chrXIII 809198 . A G 2777 PASS AC=2;AF=1.00;AN=2;DP=77;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=58.25;MQ0=0;QD=36.06;SB=-1.539e+03 GT:AD:DP:GQ:PL 1/1:0,77:77:99:2810,214,0 chrXIII 851747 . T A 354.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-7.068;DP=112;Dels=0.00;FS=274.699;HaplotypeScore=86.0733;MLEAC=1;MLEAF=0.500;MQ=58.96;MQ0=0;MQRankSum=-0.514;QD=3.16;ReadPosRankSum=-7.482;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:42,70:112:99:384,0,923 chrXIII 870442 . G T 45.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.245;DP=59;Dels=0.00;FS=34.357;HaplotypeScore=5.8036;MLEAC=1;MLEAF=0.500;MQ=59.61;MQ0=0;MQRankSum=0.455;QD=0.76;ReadPosRankSum=-2.194;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:46,12:59:75:75,0,1181 chrXIII 908185 . A G 1231.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-2.695;DP=150;Dels=0.00;FS=4.828;HaplotypeScore=7.9866;MLEAC=1;MLEAF=0.500;MQ=39.02;MQ0=0;MQRankSum=-6.705;QD=8.21;ReadPosRankSum=-2.225;SB=-2.850e+02 GT:AD:DP:GQ:PL 0/1:78,72:150:99:1261,0,1857 chrXIII 908196 . G C 1217.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DP=154;Dels=0.00;FS=11.225;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.70;MQ0=0;MQRankSum=-6.286;QD=7.90;ReadPosRankSum=-2.921;SB=-1.810e+02 GT:AD:DP:GQ:PL 0/1:79,75:154:99:1247,0,1997 chrXIII 908198 . G T 1238.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=1.063;DP=154;Dels=0.00;FS=14.608;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=40.48;MQ0=0;MQRankSum=-6.579;QD=8.04;ReadPosRankSum=-2.888;SB=-1.140e+02 GT:AD:DP:GQ:PL 0/1:79,75:154:99:1268,0,2010 chrXIII 908203 . G A 1496.01 SnpCluster AC=1;AF=0.500;AN=2;BaseQRankSum=2.606;DP=166;Dels=0.00;FS=5.593;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=41.15;MQ0=0;MQRankSum=-5.431;QD=9.01;ReadPosRankSum=-3.592;SB=-4.410e+02 GT:AD:DP:GQ:PL 0/1:80,86:166:99:1526,0,2007 chrXIII 908218 . C T 1388.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DP=147;Dels=0.00;FS=3.896;HaplotypeScore=2.6132;MLEAC=1;MLEAF=0.500;MQ=43.56;MQ0=1;MQRankSum=-4.186;QD=9.44;ReadPosRankSum=-1.488;SB=-4.760e+02 GT:AD:DP:GQ:PL 0/1:71,76:147:99:1418,0,2001 chrXIII 908275 . G A 252.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;DP=142;Dels=0.00;FS=3.001;HaplotypeScore=6.1143;MLEAC=1;MLEAF=0.500;MQ=48.46;MQ0=0;MQRankSum=-2.046;QD=1.77;ReadPosRankSum=-1.585;SB=-1.410e+02 GT:AD:DP:GQ:PL 0/1:117,25:142:99:282,0,3084 chrXIII 908365 . A G 99.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.474;DP=141;Dels=0.00;FS=30.639;HaplotypeScore=14.3750;MLEAC=1;MLEAF=0.500;MQ=46.97;MQ0=0;MQRankSum=-2.762;QD=0.70;ReadPosRankSum=-0.492;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:115,26:141:99:129,0,2631 chrXIII 908527 . A G 60.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.522;DP=269;Dels=0.00;FS=88.849;HaplotypeScore=35.9090;MLEAC=1;MLEAF=0.500;MQ=48.90;MQ0=0;MQRankSum=-6.501;QD=0.22;ReadPosRankSum=-1.788;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:236,33:269:90:90,0,6466 chrXIII 908563 . A G 166.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.502;DP=219;Dels=0.00;FS=39.122;HaplotypeScore=116.6347;MLEAC=1;MLEAF=0.500;MQ=49.63;MQ0=1;MQRankSum=-6.985;QD=0.76;ReadPosRankSum=5.438;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:180,38:219:99:196,0,4166 chrXIII 908594 . T G 465.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.125;DP=193;Dels=0.00;FS=76.896;HaplotypeScore=53.3194;MLEAC=1;MLEAF=0.500;MQ=50.25;MQ0=1;MQRankSum=-9.370;QD=2.41;ReadPosRankSum=-3.318;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:140,52:193:99:495,0,4590 chrXIII 921441 . A T 27.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.637;DP=36;Dels=0.00;FS=46.932;HaplotypeScore=5.8319;MLEAC=1;MLEAF=0.500;MQ=37.30;MQ0=2;MQRankSum=0.451;QD=0.75;ReadPosRankSum=-1.195;SB=1.45 GT:AD:DP:GQ:PL 0/1:21,14:36:57:57,0,167 chrXIII 924373 . G T 36.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DP=22;Dels=0.00;FS=2.520;HaplotypeScore=31.0331;MLEAC=1;MLEAF=0.500;MQ=28.97;MQ0=1;MQRankSum=0.262;QD=1.64;ReadPosRankSum=-0.436;SB=-3.601e+01 GT:AD:DP:GQ:PL 0/1:16,6:22:66:66,0,160 chrXIV 189585 . C T 2664 PASS AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.16;MQ0=0;QD=33.30;SB=-1.490e+03 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2697,208,0 chrXIV 263146 . G T 20.05 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.143;DP=84;Dels=0.00;FS=53.597;HaplotypeScore=1.9152;MLEAC=1;MLEAF=0.500;MQ=59.00;MQ0=0;MQRankSum=-0.132;QD=0.24;ReadPosRankSum=-3.364;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:71,13:84:50:50,0,2170 chrXIV 300948 . T A 126.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DP=77;Dels=0.00;FS=119.490;HaplotypeScore=6.7126;MLEAC=1;MLEAF=0.500;MQ=59.70;MQ0=0;MQRankSum=-0.621;QD=1.64;ReadPosRankSum=-4.161;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:35,42:77:99:156,0,183 chrXIV 300959 . G A 44.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.781;DP=73;Dels=0.00;FS=173.881;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=-0.260;QD=0.60;ReadPosRankSum=-4.882;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:43,30:73:74:74,0,455 chrXIV 377887 . G T 3689.01 PASS AC=2;AF=1.00;AN=2;DP=114;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.80;MQ0=0;QD=32.36;SB=-1.209e+03 GT:AD:DP:GQ:PL 1/1:0,114:114:99:3689,283,0 chrXIV 392468 . T G 188.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.418;DP=75;Dels=0.03;FS=166.181;HaplotypeScore=4.5029;MLEAC=1;MLEAF=0.500;MQ=59.69;MQ0=0;MQRankSum=0.591;QD=2.51;ReadPosRankSum=-0.111;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:38,35:73:99:218,0,662 chrXIV 415071 . C T 214.01 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=3.567;DP=73;Dels=0.00;FS=16.809;HaplotypeScore=2.5517;MLEAC=2;MLEAF=1.00;MQ=59.57;MQ0=1;MQRankSum=0.990;QD=2.93;ReadPosRankSum=-2.636;SB=-9.320e+02 GT:AD:DP:GQ:PL 1/1:6,67:73:27:247,27,0 chrXIV 415088 . C T 165.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=5.633;DP=70;Dels=0.00;FS=115.651;HaplotypeScore=19.2344;MLEAC=1;MLEAF=0.500;MQ=59.56;MQ0=1;MQRankSum=0.461;QD=2.36;ReadPosRankSum=-4.550;SB=-4.302e+01 GT:AD:DP:GQ:PL 0/1:30,40:70:99:195,0,241 chrXIV 415096 . C T 122.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=4.385;DP=69;Dels=0.00;FS=108.549;HaplotypeScore=19.2450;MLEAC=1;MLEAF=0.500;MQ=59.99;MQ0=0;MQRankSum=1.359;QD=1.77;ReadPosRankSum=-5.183;SB=-4.302e+01 GT:AD:DP:GQ:PL 0/1:33,36:69:99:152,0,197 chrXIV 444667 . G T 83.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930;DP=59;Dels=0.00;FS=76.593;HaplotypeScore=8.8122;MLEAC=1;MLEAF=0.500;MQ=59.37;MQ0=0;MQRankSum=0.629;QD=1.41;ReadPosRankSum=-4.549;SB=-6.514e-03 GT:AD:DP:GQ:PL 0/1:40,19:59:99:113,0,520 chrXIV 444670 . A T 130.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.478;DP=61;Dels=0.00;FS=125.908;HaplotypeScore=12.0074;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-0.509;QD=2.13;ReadPosRankSum=-3.472;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:37,24:61:99:160,0,450 chrXIV 471767 . A G 1927 PASS AC=2;AF=1.00;AN=2;DP=58;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=60.00;MQ0=0;QD=33.22;SB=-1.052e+03 GT:AD:DP:GQ:PL 1/1:0,58:58:99:1960,150,0 chrXIV 520142 . A C 101.51 filter AC=2;AF=1.00;AN=2;DP=8;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=20.75;MQ0=3;QD=12.69;SB=-6.519e-03 GT:AD:DP:GQ:PL 1/1:0,8:8:12:134,12,0 chrXIV 523924 . C T 87.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=1.777;DP=117;Dels=0.00;FS=8.219;HaplotypeScore=1.7753;MLEAC=1;MLEAF=0.500;MQ=44.94;MQ0=2;MQRankSum=-6.190;QD=0.74;ReadPosRankSum=1.414;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,19:117:99:117,0,3340 chrXIV 523932 . T A 73.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.447;DP=117;Dels=0.00;FS=6.365;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=45.59;MQ0=2;MQRankSum=-6.568;QD=0.62;ReadPosRankSum=3.022;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:98,19:117:99:103,0,3465 chrXIV 523934 . A C 76.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=2.060;DP=116;Dels=0.00;FS=6.369;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=45.66;MQ0=2;MQRankSum=-6.563;QD=0.66;ReadPosRankSum=2.904;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:97,19:116:99:106,0,3420 chrXIV 523938 . A G 96.01 SnpCluster;filter AC=1;AF=0.500;AN=2;BaseQRankSum=5.015;DP=111;Dels=0.00;FS=4.529;HaplotypeScore=0.7887;MLEAC=1;MLEAF=0.500;MQ=45.93;MQ0=2;MQRankSum=-6.535;QD=0.86;ReadPosRankSum=2.994;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:92,19:111:99:126,0,3286 chrXIV 523952 . A G 111.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.593;DP=108;Dels=0.00;FS=0.000;HaplotypeScore=0.9469;MLEAC=1;MLEAF=0.500;MQ=44.82;MQ0=2;MQRankSum=-5.794;QD=1.03;ReadPosRankSum=1.911;SB=-1.101e+01 GT:AD:DP:GQ:PL 0/1:89,19:108:99:141,0,3097 chrXIV 667351 . A T 71.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.427;DP=68;Dels=0.00;FS=171.130;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.83;MQ0=0;MQRankSum=-1.129;QD=1.04;ReadPosRankSum=-6.427;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:47,21:68:99:101,0,618 chrXIV 711247 . A T 111.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376;DP=72;Dels=0.04;FS=39.495;HaplotypeScore=20.8014;MLEAC=1;MLEAF=0.500;MQ=58.38;MQ0=0;MQRankSum=-0.227;QD=1.54;ReadPosRankSum=0.133;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:52,17:69:99:141,0,555 chrXIV 772633 . G A 111.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-6.338;DP=73;Dels=0.04;FS=161.620;HaplotypeScore=7.8460;MLEAC=1;MLEAF=0.500;MQ=57.99;MQ0=0;MQRankSum=-1.319;QD=1.52;ReadPosRankSum=-6.096;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:44,26:70:99:141,0,244 chrXIV 772638 . G A 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.247;DP=66;Dels=0.00;FS=110.446;HaplotypeScore=7.8460;MLEAC=1;MLEAF=0.500;MQ=58.07;MQ0=0;MQRankSum=-1.488;QD=0.62;ReadPosRankSum=-5.301;SB=-2.602e+00 GT:AD:DP:GQ:PL 0/1:47,19:66:71:71,0,316 chrXIV 779333 . C A 23.03 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.668;DP=68;Dels=0.01;FS=189.996;HaplotypeScore=1.5449;MLEAC=1;MLEAF=0.500;MQ=59.20;MQ0=0;MQRankSum=0.775;QD=0.34;ReadPosRankSum=-6.349;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:30,37:67:53:53,0,656 chrXV 46 . A C 41.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.938;DP=25;Dels=0.00;FS=0.000;HaplotypeScore=19.7965;MLEAC=1;MLEAF=0.500;MQ=36.92;MQ0=0;MQRankSum=-1.301;QD=1.64;ReadPosRankSum=-0.030;SB=-2.801e+01 GT:AD:DP:GQ:PL 0/1:18,7:25:71:71,0,330 chrXV 28642 . C T 495.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=3.177;DP=75;Dels=0.00;FS=15.653;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=45.99;MQ0=2;MQRankSum=-5.266;QD=6.60;ReadPosRankSum=2.488;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,25:75:99:525,0,1663 chrXV 29144 . A G 469.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245;DP=113;Dels=0.00;FS=80.662;HaplotypeScore=2.0463;MLEAC=1;MLEAF=0.500;MQ=52.67;MQ0=0;MQRankSum=-6.832;QD=4.15;ReadPosRankSum=0.413;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:87,26:113:99:499,0,3058 chrXV 31220 . A G 487.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.114;DP=124;Dels=0.00;FS=34.248;HaplotypeScore=0.5784;MLEAC=1;MLEAF=0.500;MQ=52.91;MQ0=0;MQRankSum=-7.803;QD=3.93;ReadPosRankSum=-6.415;SB=-2.001e+01 GT:AD:DP:GQ:PL 0/1:85,39:124:99:517,0,2606 chrXV 31223 . G T 379.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=1.791;DP=119;Dels=0.00;FS=33.522;HaplotypeScore=0.9578;MLEAC=1;MLEAF=0.500;MQ=52.56;MQ0=0;MQRankSum=-8.026;QD=3.18;ReadPosRankSum=-7.179;SB=-3.101e+01 GT:AD:DP:GQ:PL 0/1:85,34:119:99:409,0,2632 chrXV 50002 . C T 2919 SnpCluster AC=2;AF=1.00;AN=2;DP=80;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=56.08;MQ0=0;QD=36.49;SB=-9.790e+02 GT:AD:DP:GQ:PL 1/1:0,80:80:99:2952,229,0 chrXV 50010 . A T 2697 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=32.89;SB=-1.032e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2730,217,0 chrXV 50012 . C T 2613 SnpCluster AC=2;AF=1.00;AN=2;DP=82;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=55.88;MQ0=0;QD=31.87;SB=-1.045e+03 GT:AD:DP:GQ:PL 1/1:0,82:82:99:2646,217,0 chrXV 60240 . C T 1188 PASS AC=2;AF=1.00;AN=2;DP=96;Dels=0.00;FS=0.000;HaplotypeScore=0.9159;MLEAC=2;MLEAF=1.00;MQ=58.84;MQ0=0;QD=12.37;SB=-4.040e+02 GT:AD:DP:GQ:PL 1/1:0,96:96:93:1221,93,0 chrXV 79297 . C G 2871 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=0.884;DP=98;Dels=0.00;FS=0.000;HaplotypeScore=1.9648;MLEAC=2;MLEAF=1.00;MQ=46.82;MQ0=0;MQRankSum=0.954;QD=29.30;ReadPosRankSum=1.661;SB=-1.541e+03 GT:AD:DP:GQ:PL 1/1:1,97:98:99:2904,238,0 chrXV 79305 . T A 22.79 LowQual;filter AC=2;AF=1.00;AN=2;DP=100;Dels=0.00;FS=0.000;HaplotypeScore=4.9719;MLEAC=2;MLEAF=1.00;MQ=47.47;MQ0=0;QD=0.23;SB=-1.777e+03 GT:AD:DP:GQ:PL 1/1:0,99:100:6:54,6,0 chrXV 118287 . C A 95.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.609;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=13.43;MQ0=50;MQRankSum=1.701;QD=1.14;ReadPosRankSum=-0.609;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:75,8:83:99:125,0,198 chrXV 204593 . C T 11.34 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.576;DP=66;Dels=0.00;FS=138.888;HaplotypeScore=13.4451;MLEAC=1;MLEAF=0.500;MQ=60.00;MQ0=0;MQRankSum=-0.761;QD=0.17;ReadPosRankSum=-4.290;SB=-2.982e+00 GT:AD:DP:GQ:PL 0/1:52,14:66:41:41,0,476 chrXV 216923 . A T 49.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.189;DP=79;Dels=0.03;FS=75.607;HaplotypeScore=43.7771;MLEAC=1;MLEAF=0.500;MQ=51.00;MQ0=0;MQRankSum=-1.982;QD=0.62;ReadPosRankSum=0.419;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:37,33:77:79:79,0,483 chrXV 216933 . C T 92.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.832;DP=59;Dels=0.00;FS=76.206;HaplotypeScore=37.3251;MLEAC=1;MLEAF=0.500;MQ=47.95;MQ0=0;MQRankSum=-4.446;QD=1.56;ReadPosRankSum=1.337;SB=-6.410e-03 GT:AD:DP:GQ:PL 0/1:30,29:59:99:122,0,483 chrXV 216949 . C T 76.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.218;DP=54;Dels=0.02;FS=71.150;HaplotypeScore=32.3587;MLEAC=1;MLEAF=0.500;MQ=48.19;MQ0=0;MQRankSum=-5.014;QD=1.41;ReadPosRankSum=-3.374;SB=-6.451e-03 GT:AD:DP:GQ:PL 0/1:27,26:53:99:106,0,527 chrXV 216952 . G T 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.749;DP=50;Dels=0.00;FS=74.887;HaplotypeScore=17.1838;MLEAC=1;MLEAF=0.500;MQ=48.28;MQ0=0;MQRankSum=-4.778;QD=0.52;ReadPosRankSum=-4.142;SB=-6.498e-03 GT:AD:DP:GQ:PL 0/1:26,24:50:56:56,0,527 chrXV 412141 . G A 2638 PASS AC=2;AF=1.00;AN=2;BaseQRankSum=1.557;DP=79;Dels=0.00;FS=0.000;HaplotypeScore=4.9973;MLEAC=2;MLEAF=1.00;MQ=59.47;MQ0=0;MQRankSum=1.644;QD=33.39;ReadPosRankSum=1.688;SB=-1.489e+03 GT:AD:DP:GQ:PL 1/1:1,78:79:99:2671,202,0 chrXV 430188 . G A 26.02 LowQual;filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.776;DP=101;Dels=0.00;FS=162.694;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=59.19;MQ0=0;MQRankSum=-0.126;QD=0.26;ReadPosRankSum=-3.985;SB=-3.017e+00 GT:AD:DP:GQ:PL 0/1:85,16:101:56:56,0,671 chrXV 837032 . G T 62.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063;DP=78;Dels=0.00;FS=72.791;HaplotypeScore=6.6332;MLEAC=1;MLEAF=0.500;MQ=55.52;MQ0=0;MQRankSum=-0.997;QD=0.79;ReadPosRankSum=-4.244;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:59,19:78:92:92,0,1741 chrXV 909093 . G T 56.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.803;DP=100;Dels=0.00;FS=108.278;HaplotypeScore=30.1299;MLEAC=1;MLEAF=0.500;MQ=59.77;MQ0=0;MQRankSum=2.798;QD=0.56;ReadPosRankSum=-3.653;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:42,55:100:86:86,0,403 chrXV 1000993 . A T 137.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.224;DP=71;Dels=0.00;FS=124.081;HaplotypeScore=2.2990;MLEAC=1;MLEAF=0.500;MQ=59.68;MQ0=0;MQRankSum=1.350;QD=1.93;ReadPosRankSum=-3.238;SB=-3.015e+00 GT:AD:DP:GQ:PL 0/1:54,17:71:99:167,0,727 chrXV 1000999 . A T 51.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-5.381;DP=80;Dels=0.00;FS=115.413;HaplotypeScore=3.8508;MLEAC=1;MLEAF=0.500;MQ=59.71;MQ0=0;MQRankSum=-0.331;QD=0.64;ReadPosRankSum=-3.394;SB=-6.382e-03 GT:AD:DP:GQ:PL 0/1:64,16:80:81:81,0,1129 chrXV 1091289 . T G 117.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-0.696;DP=13;Dels=0.00;FS=0.000;HaplotypeScore=6.7988;MLEAC=1;MLEAF=0.500;MQ=36.45;MQ0=0;MQRankSum=-0.696;QD=9.00;ReadPosRankSum=-1.256;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:8,5:13:99:147,0,268 chrXVI 191944 . C T 3092 PASS AC=2;AF=1.00;AN=2;DP=83;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.72;MQ0=0;QD=37.25;SB=-1.223e+03 GT:AD:DP:GQ:PL 1/1:0,83:83:99:3125,235,0 chrXVI 216772 . G T 43.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-3.406;DP=51;Dels=0.00;FS=37.090;HaplotypeScore=9.4154;MLEAC=1;MLEAF=0.500;MQ=59.09;MQ0=0;MQRankSum=-1.035;QD=0.84;ReadPosRankSum=-1.918;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:39,12:51:73:73,0,974 chrXVI 359501 . G T 170.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.778;DP=62;Dels=0.03;FS=113.864;HaplotypeScore=4.9285;MLEAC=1;MLEAF=0.500;MQ=59.14;MQ0=1;MQRankSum=-0.008;QD=2.74;ReadPosRankSum=-4.778;SB=-2.948e+00 GT:AD:DP:GQ:PL 0/1:43,17:60:99:200,0,775 chrXVI 403300 . G T 402.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-6.904;DP=91;Dels=0.00;FS=150.220;HaplotypeScore=12.3047;MLEAC=1;MLEAF=0.500;MQ=58.23;MQ0=0;MQRankSum=-1.064;QD=4.42;ReadPosRankSum=-3.646;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:58,33:91:99:432,0,1801 chrXVI 415024 . C G 129.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-4.945;DP=55;Dels=0.00;FS=83.046;HaplotypeScore=0.0000;MLEAC=1;MLEAF=0.500;MQ=58.81;MQ0=0;MQRankSum=-0.450;QD=2.35;ReadPosRankSum=-4.762;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:36,19:55:99:159,0,1139 chrXVI 424350 . G T 214.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.904;DP=49;Dels=0.00;FS=105.799;HaplotypeScore=15.1463;MLEAC=1;MLEAF=0.500;MQ=57.61;MQ0=0;MQRankSum=0.368;QD=4.37;ReadPosRankSum=-4.925;SB=-1.558e+00 GT:AD:DP:GQ:PL 0/1:32,17:49:99:244,0,1022 chrXVI 502697 . G A 93.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947;DP=71;Dels=0.01;FS=137.503;HaplotypeScore=3.9219;MLEAC=1;MLEAF=0.500;MQ=59.47;MQ0=0;MQRankSum=0.736;QD=1.31;ReadPosRankSum=-5.056;SB=-2.684e+00 GT:AD:DP:GQ:PL 0/1:49,21:70:99:123,0,413 chrXVI 759400 . T G 4282.01 PASS AC=2;AF=1.00;AN=2;DP=120;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.84;MQ0=0;QD=35.68;SB=-1.727e+03 GT:AD:DP:GQ:PL 1/1:0,120:120:99:4282,325,0 chrXVI 837101 . G T 101.01 filter AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255;DP=74;Dels=0.00;FS=48.173;HaplotypeScore=5.9473;MLEAC=1;MLEAF=0.500;MQ=58.43;MQ0=0;MQRankSum=0.533;QD=1.36;ReadPosRankSum=-2.652;SB=-6.519e-03 GT:AD:DP:GQ:PL 0/1:50,24:74:99:131,0,1042 chrXVI 886471 . A T 277.01 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-5.283;DP=76;Dels=0.01;FS=129.429;HaplotypeScore=8.4888;MLEAC=1;MLEAF=0.500;MQ=59.39;MQ0=0;MQRankSum=-0.110;QD=3.64;ReadPosRankSum=-2.292;SB=-2.989e+00 GT:AD:DP:GQ:PL 0/1:46,29:75:99:307,0,560 chrXVI 890346 . T A 2949 PASS AC=2;AF=1.00;AN=2;DP=87;Dels=0.00;FS=0.000;HaplotypeScore=0.0000;MLEAC=2;MLEAF=1.00;MQ=59.74;MQ0=0;QD=33.90;SB=-1.495e+03 GT:AD:DP:GQ:PL 1/1:0,87:87:99:2982,226,0