#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
Phage_integrase	PF00589.17	gi|297660607|ref|YP_003710318.1|	-	6.3e-33	113.8	0.1	1.5e-32	112.6	0.1	1.6	1	0	0	1	1	1	1	Phage	integrase	family
CPSase_L_D3	PF02787.14	gi|297660607|ref|YP_003710318.1|	-	0.0025	17.5	0.5	0.069	12.9	0.0	3.0	2	1	1	3	3	3	1	Carbamoyl-phosphate	synthetase	large	chain,	oligomerisation	domain
Gp49	PF05973.9	gi|297660608|ref|YP_003710319.1|	-	2.2e-14	53.2	0.1	2.5e-14	53.0	0.1	1.0	1	0	0	1	1	1	1	Phage	derived	protein	Gp49-like	(DUF891)
HTH_26	PF13443.1	gi|297660609|ref|YP_003710320.1|	-	0.00048	20.2	0.1	0.0087	16.2	0.1	2.3	2	1	0	2	2	2	1	Cro/C1-type	HTH	DNA-binding	domain
CENP-B_N	PF04218.8	gi|297660609|ref|YP_003710320.1|	-	0.099	12.0	0.0	0.18	11.2	0.0	1.5	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
DDE_Tnp_IS1	PF03400.8	gi|297660610|ref|YP_003710321.1|	-	2e-07	31.1	0.1	2e-07	31.1	0.1	1.1	1	0	0	1	1	1	1	IS1	transposase
rve_3	PF13683.1	gi|297660610|ref|YP_003710321.1|	-	0.0012	18.3	0.1	0.0016	17.9	0.0	1.3	1	0	0	1	1	1	1	Integrase	core	domain
DDE_Tnp_IS1	PF03400.8	gi|297660611|ref|YP_003710322.1|	-	8.9e-12	45.2	0.1	1.7e-11	44.3	0.1	1.6	1	1	0	1	1	1	1	IS1	transposase
Zn_Tnp_IS1	PF03811.8	gi|297660611|ref|YP_003710322.1|	-	4.1e-05	22.9	3.7	6.3e-05	22.3	2.6	1.3	1	0	0	1	1	1	1	InsA	N-terminal	domain
DDE_Tnp_IS240	PF13610.1	gi|297660611|ref|YP_003710322.1|	-	0.00041	20.3	0.0	0.00094	19.1	0.0	1.6	2	0	0	2	2	2	1	DDE	domain
DUF2387	PF09526.5	gi|297660611|ref|YP_003710322.1|	-	0.062	13.2	0.4	0.14	12.1	0.3	1.5	1	0	0	1	1	1	0	Probable	metal-binding	protein	(DUF2387)
DNA_ligase_ZBD	PF03119.11	gi|297660611|ref|YP_003710322.1|	-	0.2	11.4	2.6	0.19	11.4	0.3	2.0	1	1	1	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
zf-ISL3	PF14690.1	gi|297660611|ref|YP_003710322.1|	-	0.23	11.5	4.5	0.58	10.2	0.3	2.8	3	0	0	3	3	3	0	zinc-finger	of	transposase	IS204/IS1001/IS1096/IS1165
Rad50_zn_hook	PF04423.9	gi|297660611|ref|YP_003710322.1|	-	0.53	9.8	2.7	0.56	9.7	0.2	2.5	2	1	0	2	2	2	0	Rad50	zinc	hook	motif
zf-H2C2_2	PF13465.1	gi|297660611|ref|YP_003710322.1|	-	0.94	9.8	3.6	2.6	8.5	0.1	2.4	2	0	0	2	2	2	0	Zinc-finger	double	domain
RED_N	PF07808.8	gi|297660612|ref|YP_003710323.1|	-	0.08	12.1	1.0	0.087	12.0	0.7	1.0	1	0	0	1	1	1	0	RED-like	protein	N-terminal	region
HTH_3	PF01381.17	gi|297660613|ref|YP_003710324.1|	-	2.5e-15	56.0	0.0	3.5e-15	55.5	0.0	1.2	1	0	0	1	1	1	1	Helix-turn-helix
HTH_31	PF13560.1	gi|297660613|ref|YP_003710324.1|	-	1.1e-08	35.0	0.0	1.4e-08	34.7	0.0	1.0	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_19	PF12844.2	gi|297660613|ref|YP_003710324.1|	-	3.7e-07	30.0	0.0	5.8e-07	29.4	0.0	1.4	1	1	0	1	1	1	1	Helix-turn-helix	domain
HTH_26	PF13443.1	gi|297660613|ref|YP_003710324.1|	-	2e-06	27.8	0.0	2.7e-06	27.4	0.0	1.2	1	0	0	1	1	1	1	Cro/C1-type	HTH	DNA-binding	domain
HTH_25	PF13413.1	gi|297660613|ref|YP_003710324.1|	-	0.043	13.4	0.0	0.056	13.0	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	domain
Ank_2	PF12796.2	gi|297660614|ref|YP_003710325.1|	-	7.3e-23	80.7	1.4	4.3e-12	46.1	0.0	3.6	1	1	2	3	3	3	3	Ankyrin	repeats	(3	copies)
Ank	PF00023.25	gi|297660614|ref|YP_003710325.1|	-	3e-17	61.4	2.2	0.00015	21.4	0.0	6.0	3	2	2	5	5	5	3	Ankyrin	repeat
Ank_3	PF13606.1	gi|297660614|ref|YP_003710325.1|	-	8.7e-17	59.5	2.7	3e-05	23.8	0.0	6.6	5	1	1	6	6	6	3	Ankyrin	repeat
Ank_4	PF13637.1	gi|297660614|ref|YP_003710325.1|	-	1.5e-15	57.2	0.9	0.0051	17.2	0.1	6.1	3	2	4	7	7	7	6	Ankyrin	repeats	(many	copies)
Ank_5	PF13857.1	gi|297660614|ref|YP_003710325.1|	-	1.5e-09	37.8	0.1	0.0073	16.5	0.0	4.5	5	0	0	5	5	5	2	Ankyrin	repeats	(many	copies)
Mer2	PF09074.5	gi|297660615|ref|YP_003710326.1|	-	0.029	14.3	1.3	0.068	13.0	0.9	1.8	1	1	0	1	1	1	0	Mer2
ATP-cone	PF03477.11	gi|297660615|ref|YP_003710326.1|	-	0.06	13.7	0.2	1.4	9.4	0.0	2.5	2	1	0	2	2	2	0	ATP	cone	domain
CENP-F_leu_zip	PF10473.4	gi|297660615|ref|YP_003710326.1|	-	0.06	13.1	1.5	0.11	12.4	1.0	1.5	1	0	0	1	1	1	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
CENP-H	PF05837.7	gi|297660615|ref|YP_003710326.1|	-	0.22	11.6	2.6	0.21	11.7	0.3	2.0	2	2	0	2	2	2	0	Centromere	protein	H	(CENP-H)
DUF1987	PF09345.5	gi|297660615|ref|YP_003710326.1|	-	0.25	11.1	1.9	0.34	10.7	0.3	1.9	2	1	0	2	2	2	0	Domain	of	unknown	function	(DUF1987)
Phage_Gp19	PF09355.5	gi|297660616|ref|YP_003710327.1|	-	0.11	12.3	0.0	0.11	12.2	0.0	1.1	1	0	0	1	1	1	0	Phage	protein	Gp19/Gp15/Gp42
Mu-like_Pro	PF10123.4	gi|297660617|ref|YP_003710328.1|	-	0.095	12.1	0.0	0.11	11.9	0.0	1.1	1	0	0	1	1	1	0	Mu-like	prophage	I	protein
D5_N	PF08706.6	gi|297660619|ref|YP_003710330.1|	-	3.7e-16	59.5	0.2	3.7e-16	59.5	0.1	3.3	3	0	0	3	3	3	1	D5	N	terminal	like
ResIII	PF04851.10	gi|297660620|ref|YP_003710331.1|	-	1.1e-21	77.4	0.0	4.9e-21	75.3	0.0	2.1	2	1	0	2	2	2	1	Type	III	restriction	enzyme,	res	subunit
Helicase_C	PF00271.26	gi|297660620|ref|YP_003710331.1|	-	9.1e-16	57.4	0.0	3.5e-15	55.6	0.0	2.0	1	0	0	1	1	1	1	Helicase	conserved	C-terminal	domain
DEAD	PF00270.24	gi|297660620|ref|YP_003710331.1|	-	5.8e-10	38.9	0.0	1.5e-09	37.6	0.0	1.6	2	0	0	2	2	2	1	DEAD/DEAH	box	helicase
DUF2075	PF09848.4	gi|297660620|ref|YP_003710331.1|	-	0.057	12.3	0.0	0.095	11.6	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
MetW	PF07021.7	gi|297660620|ref|YP_003710331.1|	-	0.07	12.4	0.0	0.22	10.8	0.0	1.8	2	0	0	2	2	2	0	Methionine	biosynthesis	protein	MetW
HTH_36	PF13730.1	gi|297660621|ref|YP_003710332.1|	-	2.6e-06	27.4	0.0	5.1e-06	26.5	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.1	gi|297660621|ref|YP_003710332.1|	-	0.0036	17.4	0.0	0.0071	16.4	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_23	PF13384.1	gi|297660621|ref|YP_003710332.1|	-	0.0042	16.6	0.1	0.011	15.3	0.0	1.7	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.1	gi|297660621|ref|YP_003710332.1|	-	0.0096	15.6	0.0	0.017	14.8	0.0	1.4	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_28	PF13518.1	gi|297660621|ref|YP_003710332.1|	-	0.069	13.1	0.7	0.12	12.3	0.0	1.8	2	0	0	2	2	2	0	Helix-turn-helix	domain
MarR_2	PF12802.2	gi|297660621|ref|YP_003710332.1|	-	0.14	11.8	0.0	0.24	11.0	0.0	1.4	1	0	0	1	1	1	0	MarR	family
HTH_17	PF12728.2	gi|297660622|ref|YP_003710333.1|	-	0.0017	18.5	0.0	0.0024	18.0	0.0	1.3	1	0	0	1	1	1	1	Helix-turn-helix	domain
Phage_integrase	PF00589.17	gi|297660623|ref|YP_003710334.1|	-	1.6e-08	34.4	0.0	3.8e-08	33.2	0.0	1.5	1	0	0	1	1	1	1	Phage	integrase	family
Proteasom_PSMB	PF10508.4	gi|297660623|ref|YP_003710334.1|	-	0.0073	14.6	0.0	0.012	13.9	0.0	1.3	1	0	0	1	1	1	1	Proteasome	non-ATPase	26S	subunit
XRCC4	PF06632.7	gi|297660624|ref|YP_003710335.1|	-	0.19	10.5	1.9	0.23	10.2	1.3	1.1	1	0	0	1	1	1	0	DNA	double-strand	break	repair	and	V(D)J	recombination	protein	XRCC4
CbiA	PF01656.18	gi|297660625|ref|YP_003710336.1|	-	1.6e-20	73.3	0.0	2.4e-20	72.7	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
AAA_31	PF13614.1	gi|297660625|ref|YP_003710336.1|	-	2.5e-08	33.9	0.0	0.00075	19.4	0.0	2.1	2	0	0	2	2	2	2	AAA	domain
VirC1	PF07015.6	gi|297660625|ref|YP_003710336.1|	-	3.5e-06	26.2	0.1	1.7e-05	24.0	0.1	1.8	1	1	0	1	1	1	1	VirC1	protein
MipZ	PF09140.6	gi|297660625|ref|YP_003710336.1|	-	7.7e-06	25.1	0.1	5.4e-05	22.3	0.1	1.9	1	1	0	1	1	1	1	ATPase	MipZ
AAA_24	PF13479.1	gi|297660625|ref|YP_003710336.1|	-	0.00031	20.3	0.0	0.00048	19.7	0.0	1.2	1	0	0	1	1	1	1	AAA	domain
YhjQ	PF06564.7	gi|297660625|ref|YP_003710336.1|	-	0.00072	18.9	0.0	0.35	10.1	0.0	2.9	2	1	0	2	2	2	1	YhjQ	protein
SRP54	PF00448.17	gi|297660625|ref|YP_003710336.1|	-	0.0012	18.3	0.0	0.0017	17.8	0.0	1.3	1	0	0	1	1	1	1	SRP54-type	protein,	GTPase	domain
Fer4_NifH	PF00142.13	gi|297660625|ref|YP_003710336.1|	-	0.0039	16.4	0.0	0.061	12.5	0.0	2.0	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
Lipase_GDSL_3	PF14606.1	gi|297660625|ref|YP_003710336.1|	-	0.052	13.2	0.0	0.076	12.7	0.0	1.2	1	0	0	1	1	1	0	GDSL-like	Lipase/Acylhydrolase	family
ATP_bind_1	PF03029.12	gi|297660625|ref|YP_003710336.1|	-	0.17	11.4	0.0	12	5.2	0.0	2.2	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
DUF479	PF04336.7	gi|297660627|ref|YP_003710338.1|	-	0.0056	16.7	0.4	0.0073	16.3	0.2	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function,	DUF479
PSK_trans_fac	PF07704.6	gi|297660627|ref|YP_003710338.1|	-	0.016	15.8	0.2	0.024	15.2	0.1	1.3	1	1	0	1	1	1	0	Rv0623-like	transcription	factor
CENP-B_N	PF04218.8	gi|297660627|ref|YP_003710338.1|	-	0.039	13.3	0.1	0.055	12.8	0.1	1.3	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
DnaJ	PF00226.26	gi|297660627|ref|YP_003710338.1|	-	0.11	12.2	0.0	0.16	11.6	0.0	1.4	1	0	0	1	1	1	0	DnaJ	domain
PemK	PF02452.12	gi|297660628|ref|YP_003710339.1|	-	1.7e-24	86.1	0.0	1.9e-24	85.9	0.0	1.0	1	0	0	1	1	1	1	PemK-like	protein